Rscript ~/code/spp/spp_package/run_spp.R -c=Fur_with_DPD_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Fur_with_DPD_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Fur_with_DPD_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Fur_with_DPD_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Fur_with_Fe_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Fur_with_Fe_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=Fur_with_Fe_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=Fur_with_Fe_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_with_DPD_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_with_DPD_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_with_DPD_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_with_DPD_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_with_DPD_and_rifampicin_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_with_DPD_and_rifampicin_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_with_DPD_and_rifampicin_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_with_DPD_and_rifampicin_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_with_Fe_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_with_Fe_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_with_Fe_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_with_Fe_2.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_with_Fe_and_rifampicin_1.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_with_Fe_and_rifampicin_1.1x36mers.QC
Rscript ~/code/spp/spp_package/run_spp.R -c=RpoB_with_Fe_and_rifampicin_2.1x36mers.unique.bam -p=20 -savp -rf -s=-0:2:400 -out=RpoB_with_Fe_and_rifampicin_2.1x36mers.QC