export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/15-Skeletonema_tropicum/juicer-Skeletonema_tropicum_CNS00166-ASM3717862v1 -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/15-Skeletonema_tropicum/juicer-Skeletonema_tropicum_CNS00166-ASM3717862v1 -p /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Skeletonema_tropicum_CNS00166-ASM3717862v1/Skeletonema_tropicum_CNS00166-ASM3717862v1.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Skeletonema_tropicum_CNS00166-ASM3717862v1/bwa-indexes/Skeletonema_tropicum_CNS00166-ASM3717862v1_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Diatomes/Skeletonema_tropicum_CNS00166-ASM3717862v1/bwa-indexes/Skeletonema_tropicum_CNS00166-ASM3717862v1.fa