#!/bin/bash
#SBATCH --job-name=zJpp2-1
#SBATCH --output=zJpp2.1.out
#SBATCH --error=zJpp2.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
#SBATCH -C NO_GPU
export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -s none -t 20 -D /oak/stanford/groupsc/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/14-Prymnesium_parvum/juicer-Prymnesium_parvum_UTEX2797 -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/14-Prymnesium_parvum/juicer-Prymnesium_parvum_UTEX2797 -p /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/14-Prymnesium_parvum/SPAdes-3.15.4-Prymnesium_parvum_UTEX2797/scaffolds.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/14-Prymnesium_parvum/SPAdes-3.15.4-Prymnesium_parvum_UTEX2797/bwa-indexes/scaffolds_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/14-Prymnesium_parvum/SPAdes-3.15.4-Prymnesium_parvum_UTEX2797/bwa-indexes/scaffolds.fasta