export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -s none -t 20 -D /oak/stanford/groupsc/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/14-Prymnesium_parvum/juicer-Prymnesium_parvum_UTEX2797 -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/14-Prymnesium_parvum/juicer-Prymnesium_parvum_UTEX2797 -p /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/14-Prymnesium_parvum/SPAdes-3.15.4-Prymnesium_parvum_UTEX2797/scaffolds.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/14-Prymnesium_parvum/SPAdes-3.15.4-Prymnesium_parvum_UTEX2797/bwa-indexes/scaffolds_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/14-Prymnesium_parvum/SPAdes-3.15.4-Prymnesium_parvum_UTEX2797/bwa-indexes/scaffolds.fasta