#!/bin/bash
#SBATCH --job-name=zJ12a-1
#SBATCH --output=zJ12a.1.out
#SBATCH --error=zJ12a.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf,wjg
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
#SBATCH -C NO_GPU
export PATH=/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.17:$PATH; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.2.13.07/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/12-Ectocarpus/juicer-GCA_000310025.1_ASM31002v1_genomic-Hi-C -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/12-Ectocarpus/juicer-GCA_000310025.1_ASM31002v1_genomic-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/GCA_000310025.1_ASM31002v1_genomic.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/bwa-indexes/GCA_000310025.1_ASM31002v1_genomic.fa