#!/bin/bash
#SBATCH --job-name=zJ10c-1
#SBATCH --output=zJ10c.1.out
#SBATCH --error=zJ10c.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf,wjg
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
#SBATCH -C NO_GPU
export PATH=/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.17:$PATH; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.2.13.07/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/10-Acanthamoeba_castellanii/juicer-Acanthamoeba_castellanii_C3-ASM2102059v1-Hi-C -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/10-Acanthamoeba_castellanii/juicer-Acanthamoeba_castellanii_C3-ASM2102059v1-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Archamoebae/Acanthamoeba_castellanii_C3-ASM2102059v1/Acanthamoeba_castellanii_C3-ASM2102059v1.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Archamoebae/Acanthamoeba_castellanii_C3-ASM2102059v1/bwa-indexes/Acanthamoeba_castellanii_C3-ASM2102059v1.fa