#!/bin/bash
#SBATCH --job-name=zJ09b-1
#SBATCH --output=zJ09b.1.out
#SBATCH --error=zJ09b.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf,wjg
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
#SBATCH -C NO_GPU
export PATH=/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.17:$PATH; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.2.13.07/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/09-Zygnema/juicer-Zygnema_circumcarinatum_SAG_698-1b-Hi-C -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/09-Zygnema/juicer-Zygnema_circumcarinatum_SAG_698-1b-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Chlorophyta/Zygnema_circumcarinatum_SAG_698-1b/Zygnema_circumcarinatum_SAG_698-1b.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Chlorophyta/Zygnema_circumcarinatum_SAG_698-1b/bwa-indexes/Zygnema_circumcarinatum_SAG_698-1b.fa