export PATH=/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.17:$PATH; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.2.13.07/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/09-Zygnema/juicer-Zygnema_circumcarinatum_SAG_698-1b-Hi-C -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/09-Zygnema/juicer-Zygnema_circumcarinatum_SAG_698-1b-Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Chlorophyta/Zygnema_circumcarinatum_SAG_698-1b/Zygnema_circumcarinatum_SAG_698-1b.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Chlorophyta/Zygnema_circumcarinatum_SAG_698-1b/bwa-indexes/Zygnema_circumcarinatum_SAG_698-1b.fa