Index of /kundaje/marinovg/oak/papers/2024_ToL_Hi-C/2023-07-09/05-Diatom-Epithemia_sp._CRS-2021b/juicer-hifiasm.hic.p_ctg-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2023-10-02 04:02 1.0K 
[TXT]README.md2023-10-02 04:02 8.7K 
[TXT]archive.hifiasm.hic.p_ctg.edits.at.step.1.txt2023-10-02 15:26 73K 
[ ]coverage_wide.at.step.0.wig2023-10-02 11:36 142K 
[ ]coverage_wide.at.step.1.wig2023-10-02 15:26 141K 
[DIR]data/2023-10-02 04:02 -  
[ ]depletion_score_narrow.at.step.0.wig2023-10-02 11:36 2.5M 
[ ]depletion_score_narrow.at.step.1.wig2023-10-02 15:26 2.5M 
[ ]depletion_score_wide.at.step.0.wig2023-10-02 11:34 134K 
[ ]depletion_score_wide.at.step.1.wig2023-10-02 15:23 132K 
[DIR]edit/2023-10-02 04:02 -  
[TXT]edits.for.step.1.txt2023-10-02 11:36 93K 
[TXT]edits.for.step.2.txt2023-10-02 15:26 68K 
[DIR]finalize/2023-10-02 04:02 -  
[TXT]h.edits.txt2023-10-02 19:57 910  
[ ]hifiasm.hic.p_ctg.0.asm2023-10-02 11:02 11K 
[ ]hifiasm.hic.p_ctg.0.assembly2023-10-02 11:08 61K 
[ ]hifiasm.hic.p_ctg.0.cprops2023-10-02 04:04 49K 
[ ]hifiasm.hic.p_ctg.0.hic2023-10-02 11:33 128M 
[TXT]hifiasm.hic.p_ctg.0_asm.scaffold_track.txt2023-10-02 11:08 276K 
[TXT]hifiasm.hic.p_ctg.0_asm.superscaf_track.txt2023-10-02 11:08 159K 
[ ]hifiasm.hic.p_ctg.1.asm2023-10-02 14:50 16K 
[ ]hifiasm.hic.p_ctg.1.assembly2023-10-02 14:55 116K 
[ ]hifiasm.hic.p_ctg.1.cprops2023-10-02 11:36 97K 
[ ]hifiasm.hic.p_ctg.1.hic2023-10-02 15:23 129M 
[TXT]hifiasm.hic.p_ctg.1_asm.scaffold_track.txt2023-10-02 14:55 432K 
[TXT]hifiasm.hic.p_ctg.1_asm.superscaf_track.txt2023-10-02 14:55 270K 
[ ]hifiasm.hic.p_ctg.2.asm2023-10-02 18:28 20K 
[ ]hifiasm.hic.p_ctg.2.assembly2023-10-02 18:34 156K 
[ ]hifiasm.hic.p_ctg.2.cprops2023-10-02 15:26 132K 
[ ]hifiasm.hic.p_ctg.2.hic2023-10-02 18:59 129M 
[TXT]hifiasm.hic.p_ctg.2_asm.scaffold_track.txt2023-10-02 18:34 552K 
[TXT]hifiasm.hic.p_ctg.2_asm.superscaf_track.txt2023-10-02 18:34 350K 
[ ]hifiasm.hic.p_ctg.FINAL.assembly2023-10-02 21:35 135K 
[ ]hifiasm.hic.p_ctg.FINAL.fasta2023-10-02 21:35 201M 
[ ]hifiasm.hic.p_ctg.FINAL.hic2023-10-02 22:04 130M 
[TXT]hifiasm.hic.p_ctg.FINAL_asm.scaffold_track.txt2023-10-02 21:48 481K 
[TXT]hifiasm.hic.p_ctg.FINAL_asm.superscaf_track.txt2023-10-02 21:48 311K 
[ ]hifiasm.hic.p_ctg.cprops2023-10-02 04:04 49K 
[TXT]hifiasm.hic.p_ctg.edits.txt2023-10-02 15:26 126K 
[ ]hifiasm.hic.p_ctg.final.asm2023-10-02 20:30 17K 
[ ]hifiasm.hic.p_ctg.final.assembly2023-10-02 20:43 131K 
[ ]hifiasm.hic.p_ctg.final.cprops2023-10-02 20:30 111K 
[ ]hifiasm.hic.p_ctg.final.fasta2023-10-02 21:33 201M 
[ ]hifiasm.hic.p_ctg.final.hic2023-10-02 20:59 131M 
[ ]hifiasm.hic.p_ctg.polished.asm2023-10-02 19:29 20K 
[ ]hifiasm.hic.p_ctg.polished.cprops2023-10-02 19:03 135K 
[ ]hifiasm.hic.p_ctg.polished.depletion_score_narrow.wig2023-10-02 19:03 2.6M 
[ ]hifiasm.hic.p_ctg.polished.depletion_score_wide.wig2023-10-02 18:59 33K 
[TXT]hifiasm.hic.p_ctg.polished.edits_2D.txt2023-10-02 19:03 11K 
[ ]hifiasm.hic.p_ctg.polished.hic2023-10-02 19:55 129M 
[ ]hifiasm.hic.p_ctg.polished.mismatch_narrow.bed2023-10-02 19:03 4.5K 
[ ]hifiasm.hic.p_ctg.polished.mismatch_wide.bed2023-10-02 18:59 719  
[TXT]hifiasm.hic.p_ctg.polished.mismatches_2D.txt2023-10-02 19:03 2.9K 
[ ]hifiasm.hic.p_ctg.polished.split.assembly2023-10-02 20:13 160K 
[ ]hifiasm.hic.p_ctg.polished.split.depletion_score_narrow.wig2023-10-02 19:57 2.6M 
[ ]hifiasm.hic.p_ctg.polished.split.depletion_score_wide.wig2023-10-02 19:55 33K 
[TXT]hifiasm.hic.p_ctg.polished.split.edits_2D.txt2023-10-02 19:57 1.0K 
[ ]hifiasm.hic.p_ctg.polished.split.mismatch_narrow.bed2023-10-02 19:57 4.6K 
[ ]hifiasm.hic.p_ctg.polished.split.mismatch_wide.bed2023-10-02 19:55 718  
[TXT]hifiasm.hic.p_ctg.polished.split.mismatches_2D.txt2023-10-02 19:57 4.8K 
[TXT]hifiasm.hic.p_ctg.polished.split.suspicious_2D.txt2023-10-02 19:57 5.7K 
[TXT]hifiasm.hic.p_ctg.polished.suspect_2D.txt2023-10-02 19:03 14K 
[TXT]hifiasm.hic.p_ctg.polished_asm.scaffold_track.txt2023-10-02 19:34 565K 
[TXT]hifiasm.hic.p_ctg.polished_asm.superscaf_track.txt2023-10-02 19:34 364K 
[ ]hifiasm.hic.p_ctg.rawchrom.asm2023-10-02 20:30 17K 
[ ]hifiasm.hic.p_ctg.rawchrom.assembly2023-10-02 20:43 131K 
[ ]hifiasm.hic.p_ctg.rawchrom.cprops2023-10-02 20:30 111K 
[ ]hifiasm.hic.p_ctg.rawchrom.fasta2023-10-02 21:33 201M 
[ ]hifiasm.hic.p_ctg.rawchrom.hic2023-10-02 20:59 131M 
[TXT]hifiasm.hic.p_ctg.rawchrom_asm.scaffold_track.txt2023-10-02 20:43 481K 
[TXT]hifiasm.hic.p_ctg.rawchrom_asm.superscaf_track.txt2023-10-02 20:43 311K 
[ ]hifiasm.hic.p_ctg.resolved.asm2023-10-02 18:28 20K 
[ ]hifiasm.hic.p_ctg.resolved.cprops2023-10-02 15:26 132K 
[ ]hifiasm.hic.p_ctg.resolved.hic2023-10-02 18:59 129M 
[ ]hifiasm.hic.p_ctg.resolved.polish.assembly2023-10-02 19:34 160K 
[TXT]hifiasm.hic.p_ctg.resolved_asm.scaffold_track.txt2023-10-02 18:34 552K 
[TXT]hifiasm.hic.p_ctg.resolved_asm.superscaf_track.txt2023-10-02 18:34 350K 
[ ]hifiasm.hic.p_ctg.split.asm2023-10-02 20:10 20K 
[ ]hifiasm.hic.p_ctg.split.assembly2023-10-02 20:30 160K 
[ ]hifiasm.hic.p_ctg.split.cprops2023-10-02 19:57 135K 
[ ]hifiasm.hic.p_ctg.split.hic2023-10-02 20:30 129M 
[TXT]hifiasm.hic.p_ctg.split_asm.scaffold_track.txt2023-10-02 20:13 565K 
[TXT]hifiasm.hic.p_ctg.split_asm.superscaf_track.txt2023-10-02 20:13 367K 
[DIR]lift/2023-10-02 04:02 -  
[DIR]merge/2023-10-02 04:02 -  
[ ]mismatch_narrow.at.step.0.bed2023-10-02 11:36 13K 
[ ]mismatch_narrow.at.step.1.bed2023-10-02 15:26 15K 
[ ]mismatch_wide.at.step.0.bed2023-10-02 11:34 4.2K 
[ ]mismatch_wide.at.step.1.bed2023-10-02 15:23 5.9K 
[TXT]mismatches.at.step.0.txt2023-10-02 11:36 7.4K 
[TXT]mismatches.at.step.1.txt2023-10-02 15:26 15K 
[DIR]polish/2023-10-02 04:02 -  
[ ]repeats_wide.at.step.0.bed2023-10-02 11:36 4.0K 
[ ]repeats_wide.at.step.1.bed2023-10-02 15:26 2.8K 
[TXT]run-asm-pipeline-post-review.sh2023-10-02 04:02 11K 
[TXT]run-asm-pipeline.sh2023-10-02 04:02 44K 
[DIR]scaffold/2023-10-02 04:02 -  
[DIR]seal/2023-10-02 04:02 -  
[DIR]split/2023-10-02 04:02 -  
[DIR]split_chrom_aware/2023-10-02 04:02 -  
[DIR]supp/2023-10-02 04:02 -  
[ ]suspect.at.step.0.bed2023-10-02 11:36 16K 
[ ]suspect.at.step.1.bed2023-10-02 15:26 16K 
[TXT]suspect_2D.at.step.0.txt2023-10-02 11:36 100K 
[TXT]suspect_2D.at.step.1.txt2023-10-02 15:26 83K 
[DIR]utils/2023-10-02 04:02 -  
[DIR]visualize/2023-10-02 04:02 -  
[ ]z2023-10-02 04:02 347  
[ ]z3D-05.1.err2023-10-02 21:45 23K 
[ ]z3D-05.1.out2023-10-02 22:04 31K 
[ ]z3D-05.1.sbatch2023-10-02 04:03 560  
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