Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/04-Amoebozoa-Tetramitus_jugosus/juicer-hifiasm.hic.p_ctg -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/04-Amoebozoa-Tetramitus_jugosus/juicer-hifiasm.hic.p_ctg -p /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/04-Amoebozoa-Tetramitus_jugosus/hifiasm.hic.p_ctg.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/04-Amoebozoa-Tetramitus_jugosus/hifiasm.hic.p_ctg.fa                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  301,678,701
 Normal Paired: 148,020,175 (49.07%)
 Chimeric Paired: 90,103,841 (29.87%)
 Chimeric Ambiguous: 52,672,937 (17.46%)
 Unmapped: 10,881,748 (3.61%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 238,124,016 (78.93%)
WARN [2023-09-21T21:40:06,155]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 176,644,878 (58.55%)
PCR Duplicates: 61,479,138 (20.38%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 377,796,024
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 36,190,965 (12.00% / 20.49%)
Hi-C Contacts: 140,453,913 (46.56% / 79.51%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 69,040,457  (22.89% / 39.08%)
Intra-chromosomal: 71,413,456  (23.67% / 40.43%)
Short Range (<20Kb): 37,462,671  (12.42% / 21.21%)
Long Range (>20Kb): 33,932,715  (11.25% / 19.21%)