Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/03-Dinoflagellata-Durinskia_oculata/juicer-hifiasm.hic.p_ctg -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/03-Dinoflagellata-Durinskia_oculata/juicer-hifiasm.hic.p_ctg -p /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/03-Dinoflagellata-Durinskia_oculata/hifiasm.hic.p_ctg.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/03-Dinoflagellata-Durinskia_oculata//hifiasm.hic.p_ctg.fa                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  283,655,565
 Normal Paired: 97,252,702 (34.29%)
 Chimeric Paired: 31,508,401 (11.11%)
 Chimeric Ambiguous: 27,909,437 (9.84%)
 Unmapped: 126,985,025 (44.77%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 128,761,103 (45.39%)
WARN [2023-09-22T07:48:08,469]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 109,904,455 (38.75%)
PCR Duplicates: 18,856,648 (6.65%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 395,558,668
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 55,806,792 (19.67% / 50.78%)
Hi-C Contacts: 54,097,663 (19.07% / 49.22%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 35,779,295  (12.61% / 32.55%)
Intra-chromosomal: 18,318,368  (6.46% / 16.67%)
Short Range (<20Kb): 16,441,010  (5.80% / 14.96%)
Long Range (>20Kb): 1,872,155  (0.66% / 1.70%)