Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/02-Dinoflagellata-Noctiluca_scintillans/juicer-hifiasm.hic.p_ctg -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/02-Dinoflagellata-Noctiluca_scintillans/juicer-hifiasm.hic.p_ctg -p /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/02-Dinoflagellata-Noctiluca_scintillans/hifiasm.hic.p_ctg.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/02-Dinoflagellata-Noctiluca_scintillans//hifiasm.hic.p_ctg.fa                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  1,703,729,311
 Normal Paired: 1,011,414,596 (59.36%)
 Chimeric Paired: 436,381,029 (25.61%)
 Chimeric Ambiguous: 194,361,752 (11.41%)
 Unmapped: 61,571,934 (3.61%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 1,447,795,625 (84.98%)
WARN [2023-09-23T13:21:31,632]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 260,240,365 (15.27%)
PCR Duplicates: 1,187,555,260 (69.70%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 261,264,700
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 61,234,186 (3.59% / 23.53%)
Hi-C Contacts: 199,006,179 (11.68% / 76.47%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 25,858,357  (1.52% / 9.94%)
Intra-chromosomal: 173,147,822  (10.16% / 66.53%)
Short Range (<20Kb): 58,932,732  (3.46% / 22.65%)
Long Range (>20Kb): 114,183,391  (6.70% / 43.88%)