Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/01-Dinoflagellata-Kryptoperidinium_triquetrum/juicer-hifiasm.hic.p_ctg -d /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/01-Dinoflagellata-Kryptoperidinium_triquetrum/juicer-hifiasm.hic.p_ctg -p /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/01-Dinoflagellata-Kryptoperidinium_triquetrum/hifiasm.hic.p_ctg.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/01-Dinoflagellata-Kryptoperidinium_triquetrum//hifiasm.hic.p_ctg.fa                                                                                                                                                                                                                                                                                       
Sequenced Read Pairs:  850,981,490
 Normal Paired: 381,262,215 (44.80%)
 Chimeric Paired: 255,870,878 (30.07%)
 Chimeric Ambiguous: 172,400,253 (20.26%)
 Unmapped: 41,448,144 (4.87%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 637,133,093 (74.87%)
WARN [2023-09-22T10:08:53,573]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 534,951,821 (62.86%)
PCR Duplicates: 102,181,272 (12.01%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 1,767,765,936
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 377,226,491 (44.33% / 70.52%)
Hi-C Contacts: 157,725,330 (18.53% / 29.48%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 96,138,556  (11.30% / 17.97%)
Intra-chromosomal: 61,586,774  (7.24% / 11.51%)
Short Range (<20Kb): 36,842,789  (4.33% / 6.89%)
Long Range (>20Kb): 24,736,077  (2.91% / 4.62%)