Index of /kundaje/marinovg/oak/papers/2024_ToL_Hi-C/2023-07-09/01-Dinoflagellata-Kryptoperidinium_triquetrum/juicer-hifiasm.hic.p_ctg-3D_DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]LICENSE2023-09-26 02:59 1.0K 
[TXT]README.md2023-09-26 02:59 8.7K 
[TXT]archive.hifiasm.hic.p_ctg.edits.at.step.1.txt2023-09-27 12:09 61K 
[ ]coverage_wide.at.step.0.wig2023-09-27 04:19 93K 
[ ]coverage_wide.at.step.1.wig2023-09-27 12:09 94K 
[ ]depletion_score_narrow.at.step.0.wig2023-09-27 04:19 1.5M 
[ ]depletion_score_narrow.at.step.1.wig2023-09-27 12:09 1.5M 
[ ]depletion_score_wide.at.step.0.wig2023-09-27 04:13 82K 
[ ]depletion_score_wide.at.step.1.wig2023-09-27 12:04 85K 
[TXT]edits.for.step.1.txt2023-09-27 04:19 79K 
[TXT]edits.for.step.2.txt2023-09-27 12:09 39K 
[TXT]h.edits.txt2023-09-27 20:19 221  
[ ]hifiasm.hic.p_ctg.0.asm2023-09-27 03:02 6.8K 
[ ]hifiasm.hic.p_ctg.0.assembly2023-09-27 03:21 39K 
[ ]hifiasm.hic.p_ctg.0.cprops2023-09-26 03:39 31K 
[ ]hifiasm.hic.p_ctg.0.hic2023-09-27 04:13 279M 
[TXT]hifiasm.hic.p_ctg.0_asm.scaffold_track.txt2023-09-27 03:21 172K 
[TXT]hifiasm.hic.p_ctg.0_asm.superscaf_track.txt2023-09-27 03:21 27K 
[ ]hifiasm.hic.p_ctg.1.asm2023-09-27 11:07 11K 
[ ]hifiasm.hic.p_ctg.1.assembly2023-09-27 11:19 86K 
[ ]hifiasm.hic.p_ctg.1.cprops2023-09-27 04:19 73K 
[ ]hifiasm.hic.p_ctg.1.hic2023-09-27 12:04 281M 
[TXT]hifiasm.hic.p_ctg.1_asm.scaffold_track.txt2023-09-27 11:19 301K 
[TXT]hifiasm.hic.p_ctg.1_asm.superscaf_track.txt2023-09-27 11:19 122K 
[ ]hifiasm.hic.p_ctg.2.asm2023-09-27 17:06 13K 
[ ]hifiasm.hic.p_ctg.2.assembly2023-09-27 17:19 104K 
[ ]hifiasm.hic.p_ctg.2.cprops2023-09-27 12:09 89K 
[ ]hifiasm.hic.p_ctg.2.hic2023-09-27 18:10 282M 
[TXT]hifiasm.hic.p_ctg.2_asm.scaffold_track.txt2023-09-27 17:19 351K 
[TXT]hifiasm.hic.p_ctg.2_asm.superscaf_track.txt2023-09-27 17:19 166K 
[ ]hifiasm.hic.p_ctg.FINAL.assembly2023-09-28 00:08 96K 
[ ]hifiasm.hic.p_ctg.FINAL.fasta2023-09-28 00:08 126M 
[ ]hifiasm.hic.p_ctg.FINAL.hic2023-09-28 01:36 283M 
[TXT]hifiasm.hic.p_ctg.FINAL_asm.scaffold_track.txt2023-09-28 00:48 312K 
[TXT]hifiasm.hic.p_ctg.FINAL_asm.superscaf_track.txt2023-09-28 00:48 147K 
[ ]hifiasm.hic.p_ctg.cprops2023-09-26 03:39 31K 
[TXT]hifiasm.hic.p_ctg.edits.txt2023-09-27 12:09 89K 
[ ]hifiasm.hic.p_ctg.final.asm2023-09-27 22:06 11K 
[ ]hifiasm.hic.p_ctg.final.assembly2023-09-27 23:05 90K 
[ ]hifiasm.hic.p_ctg.final.cprops2023-09-27 22:06 77K 
[ ]hifiasm.hic.p_ctg.final.fasta2023-09-28 00:07 125M 
[ ]hifiasm.hic.p_ctg.final.hic2023-09-27 23:52 284M 
[ ]hifiasm.hic.p_ctg.polished.asm2023-09-27 19:14 13K 
[ ]hifiasm.hic.p_ctg.polished.cprops2023-09-27 18:16 90K 
[ ]hifiasm.hic.p_ctg.polished.depletion_score_narrow.wig2023-09-27 18:16 1.6M 
[ ]hifiasm.hic.p_ctg.polished.depletion_score_wide.wig2023-09-27 18:10 20K 
[TXT]hifiasm.hic.p_ctg.polished.edits_2D.txt2023-09-27 18:16 4.2K 
[ ]hifiasm.hic.p_ctg.polished.hic2023-09-27 20:14 283M 
[ ]hifiasm.hic.p_ctg.polished.mismatch_narrow.bed2023-09-27 18:16 1.3K 
[ ]hifiasm.hic.p_ctg.polished.mismatch_wide.bed2023-09-27 18:10 552  
[TXT]hifiasm.hic.p_ctg.polished.mismatches_2D.txt2023-09-27 18:16 2.6K 
[ ]hifiasm.hic.p_ctg.polished.split.assembly2023-09-27 21:10 106K 
[ ]hifiasm.hic.p_ctg.polished.split.depletion_score_narrow.wig2023-09-27 20:19 1.6M 
[ ]hifiasm.hic.p_ctg.polished.split.depletion_score_wide.wig2023-09-27 20:14 20K 
[TXT]hifiasm.hic.p_ctg.polished.split.edits_2D.txt2023-09-27 20:19 261  
[ ]hifiasm.hic.p_ctg.polished.split.mismatch_narrow.bed2023-09-27 20:19 1.3K 
[ ]hifiasm.hic.p_ctg.polished.split.mismatch_wide.bed2023-09-27 20:14 629  
[TXT]hifiasm.hic.p_ctg.polished.split.mismatches_2D.txt2023-09-27 20:19 1.4K 
[TXT]hifiasm.hic.p_ctg.polished.split.suspicious_2D.txt2023-09-27 20:19 1.6K 
[TXT]hifiasm.hic.p_ctg.polished.suspect_2D.txt2023-09-27 18:16 6.8K 
[TXT]hifiasm.hic.p_ctg.polished_asm.scaffold_track.txt2023-09-27 19:25 356K 
[TXT]hifiasm.hic.p_ctg.polished_asm.superscaf_track.txt2023-09-27 19:25 171K 
[ ]hifiasm.hic.p_ctg.rawchrom.asm2023-09-27 22:06 11K 
[ ]hifiasm.hic.p_ctg.rawchrom.assembly2023-09-27 23:05 90K 
[ ]hifiasm.hic.p_ctg.rawchrom.cprops2023-09-27 22:06 77K 
[ ]hifiasm.hic.p_ctg.rawchrom.fasta2023-09-28 00:07 125M 
[ ]hifiasm.hic.p_ctg.rawchrom.hic2023-09-27 23:52 284M 
[TXT]hifiasm.hic.p_ctg.rawchrom_asm.scaffold_track.txt2023-09-27 23:05 312K 
[TXT]hifiasm.hic.p_ctg.rawchrom_asm.superscaf_track.txt2023-09-27 23:05 147K 
[ ]hifiasm.hic.p_ctg.resolved.asm2023-09-27 17:06 13K 
[ ]hifiasm.hic.p_ctg.resolved.cprops2023-09-27 12:09 89K 
[ ]hifiasm.hic.p_ctg.resolved.hic2023-09-27 18:10 282M 
[ ]hifiasm.hic.p_ctg.resolved.polish.assembly2023-09-27 19:25 106K 
[TXT]hifiasm.hic.p_ctg.resolved_asm.scaffold_track.txt2023-09-27 17:19 351K 
[TXT]hifiasm.hic.p_ctg.resolved_asm.superscaf_track.txt2023-09-27 17:19 166K 
[ ]hifiasm.hic.p_ctg.split.asm2023-09-27 20:57 13K 
[ ]hifiasm.hic.p_ctg.split.assembly2023-09-27 22:06 106K 
[ ]hifiasm.hic.p_ctg.split.cprops2023-09-27 20:19 90K 
[ ]hifiasm.hic.p_ctg.split.hic2023-09-27 22:06 283M 
[TXT]hifiasm.hic.p_ctg.split_asm.scaffold_track.txt2023-09-27 21:10 356K 
[TXT]hifiasm.hic.p_ctg.split_asm.superscaf_track.txt2023-09-27 21:10 172K 
[ ]mismatch_narrow.at.step.0.bed2023-09-27 04:19 5.2K 
[ ]mismatch_narrow.at.step.1.bed2023-09-27 12:09 7.7K 
[ ]mismatch_wide.at.step.0.bed2023-09-27 04:13 2.3K 
[ ]mismatch_wide.at.step.1.bed2023-09-27 12:04 4.4K 
[TXT]mismatches.at.step.0.txt2023-09-27 04:19 5.8K 
[TXT]mismatches.at.step.1.txt2023-09-27 12:09 6.0K 
[ ]repeats_wide.at.step.0.bed2023-09-27 04:19 9.1K 
[ ]repeats_wide.at.step.1.bed2023-09-27 12:09 6.0K 
[TXT]run-asm-pipeline-post-review.sh2023-09-26 02:59 11K 
[TXT]run-asm-pipeline.sh2023-09-26 02:59 44K 
[ ]suspect.at.step.0.bed2023-09-27 04:19 13K 
[ ]suspect.at.step.1.bed2023-09-27 12:09 11K 
[TXT]suspect_2D.at.step.0.txt2023-09-27 04:19 85K 
[TXT]suspect_2D.at.step.1.txt2023-09-27 12:09 45K 
[ ]z2023-09-26 03:00 371  
[ ]z3D-01.1.err2023-09-28 00:37 65K 
[ ]z3D-01.1.out2023-09-28 01:36 29K 
[ ]z3D-01.1.sbatch2023-09-26 03:00 584  
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