./run-asm-pipeline.sh -r 20 --sort-output --build-gapped-map /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/01-Dinoflagellata-Kryptoperidinium_triquetrum/hifiasm.hic.p_ctg.fa /oak/stanford/groups/akundaje/marinovg/papers/2024_ToL_Hi-C/2023-07-09/01-Dinoflagellata-Kryptoperidinium_triquetrum/juicer-hifiasm.hic.p_ctg/aligned/merged_nodups.txt &