python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HOXB7-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HOXB7-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB11-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB11-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF335-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig 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FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF34-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF34-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF366-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF366-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF555-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF555-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TRIM28-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HOXC10-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HOXC10-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HOXD13-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HOXD13-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEIS1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEIS1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HOXA7-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HOXA7-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF263-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF263-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF184-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF184-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF214-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF214-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF580-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF580-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF837-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF837-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF770-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF777-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF777-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF692-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF692-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF3-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF3-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.AEBP2-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.AEBP2-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF585B-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF585B-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF433-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF433-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF548-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF548-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF48-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF48-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF146-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF146-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REPIN1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REPIN1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB26-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/HEK293-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB26-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GATAD2B-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NKRF-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NKRF-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBL1XR1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SKIL-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SKIL-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MTA2-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MTA2-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TAF1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TAF1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.WRNIP1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.WRNIP1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZZZ3-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZZZ3-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SP1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SP1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PML-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PML-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFIC-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFIC-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BRCA1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BRCA1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL3-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL3-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCLAF1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCLAF1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.UBTF-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.UBTF-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MTA3-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MTA3-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EED-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EED-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD5-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD5-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF207-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF207-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HCFC1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HCFC1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF274-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF274-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZFP36-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZFP36-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TARDBP-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TARDBP-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXK2-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXK2-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF2-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF2-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB40-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB40-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF622-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF24-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF24-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMARCA5-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMARCA5-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB11-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB11-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.DPF2-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.DPF2-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF592-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFXL1-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFXL1-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF217-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF217-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-peaks-intersection1 2 3 5 100 chromBPNet-bias_chrombpnet.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-peaks-intersection1-chromBPNet-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GATAD2B-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GATAD2B-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NKRF-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.WRNIP1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.WRNIP1-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZZZ3-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PML-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PML-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFXL1-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF217-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1/SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF217-vs-peaks-intersection1-SK-L001-GM12868-ATAC_50K_cells_1x_PBS_wash-1-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A-vs-peaks-intersection1 2 3 5 100 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python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GATAD2B-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GATAD2B-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NKRF-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NKRF-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PRDM15-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PRDM15-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF2-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MLLT1-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBL1XR1-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SKIL-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SKIL-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MTA2-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MTA2-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TAF1-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.WRNIP1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.WRNIP1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZZZ3-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SP1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SP1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PML-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PML-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFIC-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFIC-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BRCA1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BRCA1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL3-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL3-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCLAF1-vs-peaks-intersection1 2 3 5 100 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.UBTF-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MTA3-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MTA3-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EED-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EED-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD5-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD5-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py 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FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HCFC1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HCFC1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-peaks-intersection1 2 3 5 100 /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-ATAC/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2/SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2.2x36mers.hg38-female.unique.dedup.5p.RPM.bigWig FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4-vs-peaks-intersection1-SK-L008-GM12868-ATAC_50K_cells_5uM_Kethoxal_1x_PBS_wash_biotin_pulldown-2-profile -normalize -bed python /oak/stanford/groups/akundaje/marinovg/code/signalAroundCoordinate-BW.py FIMO-files/GM12878-FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF274-vs-peaks-intersection1 2 3 5 100 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