Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-Rad21-ChIA-PET-ENCSR981FNA -d /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-Rad21-ChIA-PET-ENCSR981FNA -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  624,972,508
 Normal Paired: 572,952,812 (91.68%)
 Chimeric Paired: 16,612,641 (2.66%)
 Chimeric Ambiguous: 3,464,207 (0.55%)
 Unmapped: 31,942,848 (5.11%)
 Ligation Motif Present: 93,057 (0.01%)
Alignable (Normal+Chimeric Paired): 589,565,453 (94.33%)
Unique Reads: 280,313,228 (44.85%)
PCR Duplicates: 309,103,642 (49.46%)
Optical Duplicates: 148,583 (0.02%)
Library Complexity Estimate: 340,725,166
Intra-fragment Reads: 112,621,075 (18.02% / 40.18%)
Below MAPQ Threshold: 41,284,466 (6.61% / 14.73%)
Hi-C Contacts: 126,407,687 (20.23% / 45.10%)
 Ligation Motif Present: 35,362  (0.01% / 0.01%)
 3' Bias (Long Range): 49% - 51%
 Pair Type %(L-I-O-R): 25% - 25% - 26% - 25%
Inter-chromosomal: 36,318,806  (5.81% / 12.96%)
Intra-chromosomal: 90,088,881  (14.41% / 32.14%)
Short Range (<20Kb): 80,317,334  (12.85% / 28.65%)
Long Range (>20Kb): 9,765,102  (1.56% / 3.48%)