Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-RAD21-ChIA-PET-ENCSR355CTR -d /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-RAD21-ChIA-PET-ENCSR355CTR -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  459,140,632
 Normal Paired: 357,529,938 (77.87%)
 Chimeric Paired: 68,702,220 (14.96%)
 Chimeric Ambiguous: 24,391,450 (5.31%)
 Unmapped: 8,517,024 (1.85%)
 Ligation Motif Present: 80,135 (0.02%)
Alignable (Normal+Chimeric Paired): 426,232,158 (92.83%)
Unique Reads: 200,052,109 (43.57%)
PCR Duplicates: 224,244,523 (48.84%)
Optical Duplicates: 1,935,526 (0.42%)
Library Complexity Estimate: 241,937,302
Intra-fragment Reads: 98,592,778 (21.47% / 49.28%)
Below MAPQ Threshold: 11,709,675 (2.55% / 5.85%)
Hi-C Contacts: 89,749,656 (19.55% / 44.86%)
 Ligation Motif Present: 31,288  (0.01% / 0.02%)
 3' Bias (Long Range): 49% - 51%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,485,815  (0.76% / 1.74%)
Intra-chromosomal: 86,263,841  (18.79% / 43.12%)
Short Range (<20Kb): 70,109,205  (15.27% / 35.05%)
Long Range (>20Kb): 16,154,584  (3.52% / 8.08%)