Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-POL2-ChIA-PET-ENCSR905HWW -d /oak/stanford/groups/akundaje/marinovg/papers/2024_Hi-KAS/2024-04-21-figures/juicer-GM12878-POL2-ChIA-PET-ENCSR905HWW -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  879,867,506
 Normal Paired: 580,398,374 (65.96%)
 Chimeric Paired: 188,688,445 (21.45%)
 Chimeric Ambiguous: 84,297,180 (9.58%)
 Unmapped: 26,483,507 (3.01%)
 Ligation Motif Present: 151,332 (0.02%)
Alignable (Normal+Chimeric Paired): 769,086,819 (87.41%)
Unique Reads: 133,261,418 (15.15%)
PCR Duplicates: 634,819,479 (72.15%)
Optical Duplicates: 1,005,922 (0.11%)
Library Complexity Estimate: 133,688,931
Intra-fragment Reads: 66,721,940 (7.58% / 50.07%)
Below MAPQ Threshold: 16,575,854 (1.88% / 12.44%)
Hi-C Contacts: 49,963,624 (5.68% / 37.49%)
 Ligation Motif Present: 17,319  (0.00% / 0.01%)
 3' Bias (Long Range): 48% - 52%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 3,878,756  (0.44% / 2.91%)
Intra-chromosomal: 46,084,868  (5.24% / 34.58%)
Short Range (<20Kb): 36,241,174  (4.12% / 27.20%)
Long Range (>20Kb): 9,843,651  (1.12% / 7.39%)