export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load java; module load system; module load parallel/20180122; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2021-01-13-GM18278-hg19-reprocessing/juicer-L1971-L1972-L1973-L11974-GM12878_HiKAS_10M-hg19 -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/ssDNA/2021-01-13-GM18278-hg19-reprocessing/juicer-L1971-L1972-L1973-L11974-GM12878_HiKAS_10M-hg19 -p /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-male.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg19/bwa-indexes/hg19-male_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg19/bwa-indexes/hg19-male.fa &