MOTIF_INDEX MOTIF_SOURCE MOTIF_ID ALT_ID CONSENSUS WIDTH SITES E-VALUE E-VALUE_SOURCE MOST_SIMILAR_MOTIF_SOURCE MOST_SIMILAR_MOTIF URL 1 MEME TTTTKTWTTTTTWGT MEME-1 TTTTKTWTTTTTWGT 15 973 8.7e-081 MEME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA1125.1 (ZNF384) http://jaspar2018.genereg.net/matrix/MA1125.1 2 MEME CCTGTARTCCCAGCW MEME-2 CCTGTARTCCCAGCW 15 823 2.3e-057 MEME 3 MEME YTYGGGAGGCYGAGG MEME-3 YTYGGGAGGCYGAGG 15 1011 5.5e-041 MEME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0039.3 (KLF4) http://jaspar2018.genereg.net/matrix/MA0039.3 4 STREME 1-GCCCCGCCCCYN STREME-1 GCCCCGCCCCYN 12 5188 8.1e-037 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0079.3 (SP1) http://jaspar2018.genereg.net/matrix/MA0079.3 5 STREME 2-CCTGTARTCCCAGC STREME-2 CCTGTARTCCCAGC 14 847 2.4e-020 STREME 6 STREME 3-ACTACAWYTCCCAG STREME-3 ACTACAWYTCCCAG 14 763 2.4e-020 STREME 7 STREME 4-GCCTCAGCCTCCCRA STREME-4 GCCTCAGCCTCCCRA 15 732 3.5e-017 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0039.3 (KLF4) http://jaspar2018.genereg.net/matrix/MA0039.3 8 STREME 5-CCAGCCTGGCCAACA STREME-5 CCAGCCTGGCCAACA 15 622 8.1e-017 STREME 9 STREME 6-AAATTAGCCGGGCRT STREME-6 AAATTAGCCGGGCRT 15 545 7.3e-016 STREME 10 STREME 7-TAGAGACRGGGTTT STREME-7 TAGAGACRGGGTTT 14 399 2.4e-014 STREME 11 STREME 8-CCCAGCCC STREME-8 CCCAGCCC 8 6755 2.8e-014 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0079.3 (SP1) http://jaspar2018.genereg.net/matrix/MA0079.3 12 STREME 9-CTAAAAATACAA STREME-9 CTAAAAATACAA 12 403 9.9e-014 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0497.1 (MEF2C) http://jaspar2018.genereg.net/matrix/MA0497.1 13 STREME 10-AGGTCAGGAGTTCGA STREME-10 10-AGGTCAGGAGTTCGA 15 458 2.3e-012 STREME db/EUKARYOTE/jolma2013.meme Rarg_DBD_1 http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=Rarg_DBD_1 14 STREME 11-TGCGCATGCGCA STREME-11 11-TGCGCATGCGCA 12 539 7.4e-011 STREME db/EUKARYOTE/jolma2013.meme NRF1_full http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=NRF1_full 15 STREME 12-TGGGAA STREME-12 12-TGGGAA 6 2556 2.3e-010 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA1116.1 (RBPJ) http://jaspar2018.genereg.net/matrix/MA1116.1 16 STREME 13-CCASCAGGGGGCGCY STREME-13 13-CCASCAGGGGGCGCY 15 652 6.4e-010 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0139.1 (CTCF) http://jaspar2018.genereg.net/matrix/MA0139.1 17 STREME 14-CCTGGSAAC STREME-14 14-CCTGGSAAC 9 1177 5.8e-009 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA1116.1 (RBPJ) http://jaspar2018.genereg.net/matrix/MA1116.1 18 STREME 15-GGTGGMTCACG STREME-15 15-GGTGGMTCACG 11 241 5.7e-008 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0477.1 (FOSL1) http://jaspar2018.genereg.net/matrix/MA0477.1 19 STREME 16-AGGAGAATCGCTTGA STREME-16 16-AGGAGAATCGCTTGA 15 365 1.0e-007 STREME 20 STREME 17-GCAACCTCCGCCTCC STREME-17 17-GCAACCTCCGCCTCC 15 317 2.2e-007 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0079.3 (SP1) http://jaspar2018.genereg.net/matrix/MA0079.3 21 STREME 18-AGTGAGCCGAGATCG STREME-18 18-AGTGAGCCGAGATCG 15 216 3.9e-007 STREME 22 STREME 19-RRCCAATSR STREME-19 19-RRCCAATSR 9 1024 6.3e-007 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0502.1 (NFYB) http://jaspar2018.genereg.net/matrix/MA0502.1 23 STREME 20-CGGCGGCGGCGGCGG STREME-20 20-CGGCGGCGGCGGCGG 15 785 1.6e-006 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0516.1 (SP2) http://jaspar2018.genereg.net/matrix/MA0516.1 24 STREME 21-CAAGATGGCGGC STREME-21 21-CAAGATGGCGGC 12 408 2.6e-006 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0095.2 (YY1) http://jaspar2018.genereg.net/matrix/MA0095.2 25 STREME 22-CCGGAAGTGRCG STREME-22 22-CCGGAAGTGRCG 12 406 6.1e-006 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0062.2 (Gabpa) http://jaspar2018.genereg.net/matrix/MA0062.2 26 STREME 23-ACAAAGSC STREME-23 23-ACAAAGSC 8 2076 1.2e-005 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0442.2 (SOX10) http://jaspar2018.genereg.net/matrix/MA0442.2 27 STREME 24-GRTGACGTCAYC STREME-24 24-GRTGACGTCAYC 12 548 1.7e-005 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0018.3 (CREB1) http://jaspar2018.genereg.net/matrix/MA0018.3 28 STREME 25-AGTGCAGTGGCG STREME-25 25-AGTGCAGTGGCG 12 161 1.2e-004 STREME db/MOUSE/uniprobe_mouse.meme UP00031_1 (Zbtb3_primary) http://thebrain.bwh.harvard.edu/uniprobe/details2.php?id=00031 29 STREME 26-CTCGGCCTC STREME-26 26-CTCGGCCTC 9 3512 1.8e-004 STREME 30 STREME 27-CAGCCCCGGG STREME-27 27-CAGCCCCGGG 10 1634 5.1e-004 STREME db/MOUSE/uniprobe_mouse.meme UP00102_1 (Zic1_primary) http://thebrain.bwh.harvard.edu/uniprobe/details2.php?id=00102 31 STREME 28-TCTGCA STREME-28 28-TCTGCA 6 1147 7.9e-004 STREME 32 STREME 29-CACGTGAYCCG STREME-29 29-CACGTGAYCCG 11 220 1.3e-003 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0831.2 (TFE3) http://jaspar2018.genereg.net/matrix/MA0831.2 33 STREME 30-GAGGAGGAGGAGGA STREME-30 30-GAGGAGGAGGAGGA 14 61 1.9e-003 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0528.1 (ZNF263) http://jaspar2018.genereg.net/matrix/MA0528.1 34 STREME 31-CRCGCACACACAC STREME-31 31-CRCGCACACACAC 13 551 2.0e-003 STREME db/EUKARYOTE/jolma2013.meme EGR3_DBD http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=EGR3_DBD 35 STREME 32-TATWWATA STREME-32 32-TATWWATA 8 429 2.3e-003 STREME db/MOUSE/uniprobe_mouse.meme UP00029_1 (Tbp_primary) http://thebrain.bwh.harvard.edu/uniprobe/details2.php?id=00029 36 STREME 33-CCAATAGGAG STREME-33 33-CCAATAGGAG 10 93 3.2e-003 STREME 37 STREME 34-CGCCCGCCACC STREME-34 34-CGCCCGCCACC 11 81 3.2e-003 STREME db/EUKARYOTE/jolma2013.meme ZNF740_full http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=ZNF740_full 38 STREME 35-ACCCGGAAGCG STREME-35 35-ACCCGGAAGCG 11 144 3.7e-003 STREME db/EUKARYOTE/jolma2013.meme ELF1_DBD http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=ELF1_DBD 39 STREME 36-CGGGAA STREME-36 36-CGGGAA 6 2156 4.8e-003 STREME db/EUKARYOTE/jolma2013.meme E2F7_DBD http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=E2F7_DBD 40 STREME 37-GAAACTGAGGCHCAG STREME-37 37-GAAACTGAGGCHCAG 15 135 6.4e-003 STREME 41 STREME 38-CGGAAGCGGAAGCVG STREME-38 38-CGGAAGCGGAAGCVG 15 79 6.4e-003 STREME db/EUKARYOTE/jolma2013.meme ETV6_full_1 http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=ETV6_full_1 42 STREME 39-CTGCAGCYGCTG STREME-39 39-CTGCAGCYGCTG 12 1213 6.9e-003 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0521.1 (Tcf12) http://jaspar2018.genereg.net/matrix/MA0521.1 43 STREME 40-MRGTGAC STREME-40 40-MRGTGAC 7 1471 9.1e-003 STREME 44 STREME 41-GGGAGGCGGGA STREME-41 41-GGGAGGCGGGA 11 81 9.5e-003 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0516.1 (SP2) http://jaspar2018.genereg.net/matrix/MA0516.1 45 STREME 42-CGTCATCA STREME-42 42-CGTCATCA 8 65 1.1e-002 STREME db/EUKARYOTE/jolma2013.meme BATF3_DBD http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=BATF3_DBD 46 STREME 43-CACCGTGTTAGCCA STREME-43 43-CACCGTGTTAGCCA 14 34 1.6e-002 STREME 47 STREME 44-ATGACTCA STREME-44 44-ATGACTCA 8 98 1.9e-002 STREME db/EUKARYOTE/jolma2013.meme JDP2_full_1 http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=JDP2_full_1 48 STREME 45-AAAGAAAGAAA STREME-45 45-AAAGAAAGAAA 11 333 2.1e-002 STREME 49 STREME 46-CCAAGGTCACA STREME-46 46-CCAAGGTCACA 11 194 2.6e-002 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0160.1 (NR4A2) http://jaspar2018.genereg.net/matrix/MA0160.1 50 STREME 47-TKAGAAA STREME-47 47-TKAGAAA 7 773 2.7e-002 STREME 51 STREME 48-ATGCAAAT STREME-48 48-ATGCAAAT 8 219 3.0e-002 STREME db/EUKARYOTE/jolma2013.meme Pou2f2_DBD_2 http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=Pou2f2_DBD_2 52 STREME 49-GGCRCRGTGGCTCAC STREME-49 49-GGCRCRGTGGCTCAC 15 84 3.1e-002 STREME 53 STREME 50-GGCTGCCGGGA STREME-50 50-GGCTGCCGGGA 11 86 3.1e-002 STREME 54 STREME 51-GCAYSCYGGGAGYYG STREME-51 51-GCAYSCYGGGAGYYG 15 144 3.3e-002 STREME db/EUKARYOTE/jolma2013.meme TP63_DBD http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=TP63_DBD 55 STREME 52-CTGCAG STREME-52 52-CTGCAG 6 2217 3.3e-002 STREME 56 STREME 53-ACGCATGCGCCCC STREME-53 53-ACGCATGCGCCCC 13 63 3.5e-002 STREME db/EUKARYOTE/jolma2013.meme NRF1_full http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=NRF1_full 57 STREME 54-GCCATGGHGACS STREME-54 54-GCCATGGHGACS 12 185 3.7e-002 STREME db/EUKARYOTE/jolma2013.meme RFX3_DBD_1 http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=RFX3_DBD_1 58 STREME 55-CGCCCCCTCCCC STREME-55 55-CGCCCCCTCCCC 12 908 4.1e-002 STREME db/MOUSE/uniprobe_mouse.meme UP00002_1 (Sp4_primary) http://thebrain.bwh.harvard.edu/uniprobe/details2.php?id=00002 59 STREME 56-CCCCTCCC STREME-56 56-CCCCTCCC 8 1347 4.2e-002 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0079.3 (SP1) http://jaspar2018.genereg.net/matrix/MA0079.3 60 STREME 57-AATACAA STREME-57 57-AATACAA 7 127 4.6e-002 STREME # MEME-ChIP (Motif Analysis of Large Nucleotide Datasets): Version 5.3.0 released on Wed Nov 25 19:19:29 2020 -0800 # The format of this file is described at http://meme-suite.org/doc/meme-chip-output-format.html # meme-chip -oc . -time 300 -ccut 100 -fdesc description -dna -order 2 -minw 6 -maxw 15 -db db/EUKARYOTE/jolma2013.meme -db db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme -db db/MOUSE/uniprobe_mouse.meme -meme-mod zoops -meme-nmotifs 3 -meme-searchsize 100000 -streme-pvt 0.05 -centrimo-score 5.0 -centrimo-ethresh 10.0 Patient_3_NOTCH-GSM2439182.1x50mers.hg38-no-haps.unique.MACS2_peaks.100bp.fasta