MOTIF_INDEX MOTIF_SOURCE MOTIF_ID ALT_ID CONSENSUS WIDTH SITES E-VALUE E-VALUE_SOURCE MOST_SIMILAR_MOTIF_SOURCE MOST_SIMILAR_MOTIF URL 1 MEME AAAAATACAAAAAWW MEME-1 AAAAATACAAAAAWW 15 1383 5.7e-111 MEME db/EUKARYOTE/jolma2013.meme ONECUT3_DBD http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=ONECUT3_DBD 2 MEME WGCTGGGATTACAG MEME-2 WGCTGGGATTACAG 14 949 2.2e-082 MEME 3 STREME 1-CCCCRCCCCYDC STREME-1 CCCCRCCCCYDC 12 12216 6.1e-063 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0079.3 (SP1) http://jaspar2018.genereg.net/matrix/MA0079.3 4 MEME CCYGCCTCMGCCTCC MEME-3 CCYGCCTCMGCCTCC 15 4053 1.7e-048 MEME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0528.1 (ZNF263) http://jaspar2018.genereg.net/matrix/MA0528.1 5 STREME 2-CCTGTAATCCCAGCW STREME-2 CCTGTAATCCCAGCW 15 1424 4.0e-042 STREME 6 STREME 3-GYCTCRRCCTCC STREME-3 GYCTCRRCCTCC 12 1686 3.9e-037 STREME 7 STREME 4-CAGCCTGGSCAACAT STREME-4 CAGCCTGGSCAACAT 15 1104 7.0e-033 STREME 8 STREME 5-CCACCAYGCCCGGC STREME-5 CCACCAYGCCCGGC 14 1106 2.5e-029 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0039.3 (KLF4) http://jaspar2018.genereg.net/matrix/MA0039.3 9 STREME 6-GAGRATCRCTTGA STREME-6 GAGRATCRCTTGA 13 885 5.5e-027 STREME 10 STREME 7-AAAATACAAAAATTA STREME-7 AAAATACAAAAATTA 15 857 9.9e-027 STREME 11 STREME 8-GAGGTTGCAGTGAGC STREME-8 GAGGTTGCAGTGAGC 15 462 7.8e-016 STREME 12 STREME 9-CCASCAGRGGGCGCY STREME-9 CCASCAGRGGGCGCY 15 1037 1.1e-015 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0139.1 (CTCF) http://jaspar2018.genereg.net/matrix/MA0139.1 13 STREME 10-CACTTCCGGYT STREME-10 10-CACTTCCGGYT 11 752 3.8e-013 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0750.2 (ZBTB7A) http://jaspar2018.genereg.net/matrix/MA0750.2 14 STREME 11-RGYGARACYCYGTCT STREME-11 11-RGYGARACYCYGTCT 15 528 6.8e-013 STREME db/MOUSE/uniprobe_mouse.meme UP00195_1 (Six3_1732.2) http://thebrain.bwh.harvard.edu/uniprobe/details2.php?id=00195 15 STREME 12-TGACGTCA STREME-12 12-TGACGTCA 8 957 3.1e-012 STREME db/EUKARYOTE/jolma2013.meme XBP1_DBD_1 http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=XBP1_DBD_1 16 STREME 13-YGCGCATGCGCR STREME-13 13-YGCGCATGCGCR 12 733 6.6e-011 STREME db/EUKARYOTE/jolma2013.meme NRF1_full http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=NRF1_full 17 STREME 14-GCCGCCGCCGCCG STREME-14 14-GCCGCCGCCGCCG 13 920 1.9e-010 STREME db/EUKARYOTE/jolma2013.meme HINFP1_full_1 http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=HINFP1_full_1 18 STREME 15-ACTACAWYTCCCAGV STREME-15 15-ACTACAWYTCCCAGV 15 347 2.2e-010 STREME 19 STREME 16-GGCCCCGCCC STREME-16 16-GGCCCCGCCC 10 2023 4.6e-010 STREME db/MOUSE/uniprobe_mouse.meme UP00093_1 (Klf7_primary) http://thebrain.bwh.harvard.edu/uniprobe/details2.php?id=00093 20 STREME 17-AGTGCAGTGGCGCGA STREME-17 17-AGTGCAGTGGCGCGA 15 343 5.1e-010 STREME db/MOUSE/uniprobe_mouse.meme UP00007_1 (Egr1_primary) http://thebrain.bwh.harvard.edu/uniprobe/details2.php?id=00007 21 STREME 18-RRACAAAG STREME-18 18-RRACAAAG 8 2067 7.5e-010 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0514.1 (Sox3) http://jaspar2018.genereg.net/matrix/MA0514.1 22 STREME 19-CTCGGCYTC STREME-19 19-CTCGGCYTC 9 2886 2.1e-008 STREME 23 STREME 20-ACCTCGTGATCCGC STREME-20 20-ACCTCGTGATCCGC 14 226 9.3e-007 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0526.2 (USF2) http://jaspar2018.genereg.net/matrix/MA0526.2 24 STREME 21-ACCCGGGAGGCG STREME-21 21-ACCCGGGAGGCG 12 429 9.6e-007 STREME 25 STREME 22-AGCCAATCR STREME-22 22-AGCCAATCR 9 1092 2.2e-006 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0060.3 (NFYA) http://jaspar2018.genereg.net/matrix/MA0060.3 26 STREME 23-GCAGCTGC STREME-23 23-GCAGCTGC 8 5425 8.8e-006 STREME db/EUKARYOTE/jolma2013.meme NHLH1_DBD http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=NHLH1_DBD 27 STREME 24-CCCCTCCC STREME-24 24-CCCCTCCC 8 3038 1.4e-005 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0079.3 (SP1) http://jaspar2018.genereg.net/matrix/MA0079.3 28 STREME 25-CAAGATGGCGGC STREME-25 25-CAAGATGGCGGC 12 295 2.0e-005 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0095.2 (YY1) http://jaspar2018.genereg.net/matrix/MA0095.2 29 STREME 26-CAGCACCRYGGACA STREME-26 26-CAGCACCRYGGACA 14 144 3.0e-005 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0138.2 (REST) http://jaspar2018.genereg.net/matrix/MA0138.2 30 STREME 27-CCATGGCAACCRVV STREME-27 27-CCATGGCAACCRVV 14 443 1.5e-004 STREME db/EUKARYOTE/jolma2013.meme Rfx3_DBD http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=Rfx3_DBD 31 db/EUKARYOTE/jolma2013.meme NKX2-8_full VCACTTSAV 9 17183 2.1e-003 CENTRIMO http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=NKX2-8_full 32 db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0673.1 NKX2-8 VCACTTSAV 9 16870 3.5e-003 CENTRIMO http://jaspar2018.genereg.net/matrix/MA0673.1 33 STREME 28-CCCTCCCTCCC STREME-28 28-CCCTCCCTCCC 11 2706 3.3e-002 STREME db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme MA0471.1 (E2F6) http://jaspar2018.genereg.net/matrix/MA0471.1 34 db/EUKARYOTE/jolma2013.meme NKX2-8_DBD VCACTTVAV 9 20429 4.2e-002 CENTRIMO http://floresta.eead.csic.es/footprintdb/index.php?db=HumanTF:1.0&motif=NKX2-8_DBD # MEME-ChIP (Motif Analysis of Large Nucleotide Datasets): Version 5.3.0 released on Wed Nov 25 19:19:29 2020 -0800 # The format of this file is described at http://meme-suite.org/doc/meme-chip-output-format.html # meme-chip -oc . -time 300 -ccut 100 -fdesc description -dna -order 2 -minw 6 -maxw 15 -db db/EUKARYOTE/jolma2013.meme -db db/JASPAR/JASPAR2018_CORE_vertebrates_non-redundant.meme -db db/MOUSE/uniprobe_mouse.meme -meme-mod zoops -meme-nmotifs 3 -meme-searchsize 100000 -streme-pvt 0.05 -centrimo-score 5.0 -centrimo-ethresh 10.0 Patient_3_FGFR1_GSM2439181.1x50mers.hg38-no-haps.unique.MACS2_peaks.100bp.fasta