Database and Motifs High-scoring Motif Occurences Debugging Information


FIMO - Motif search tool

FIMO version 4.12.0, (Release date: Tue Jun 27 16:22:50 2017 -0700)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble, "FIMO: Scanning for occurrences of a given motif", Bioinformatics, 27(7):1017-1018, 2011. [full text]

DATABASE AND MOTIFS

DATABASE /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bowtie-indexes/chrM.fa
Database contains 1 sequences, 16569 residues

MOTIFS /oak/stanford/groups/akundaje/marinovg/various/2020-12-05-FGFR1-chrM/Control_4_FGFR1_GSM2439179-appMEMECHIP_5.3.01607328249702711587880/combined.meme (DNA)

MOTIF WIDTH BEST POSSIBLE MATCH
1 15 CCCCGCCCCCCCCCC
2 15 AAAATAAAAAAATTA
3 14 CCCCGCCCCCTCCC
4 15 CTGTAATCCCAGCTA
5 14 CGCCCCCTGGTGGC
6 11 ACCGGAAGTGA
7 15 GCCTCAGCCTCCCAA
8 15 CTGTAATCCCAGCTA
9 11 ACTACAAATCC
10 14 GTTGCCATGGCAAC
11 12 CGCCGCCGCCGC
12 12 AGCCAATCAGAG
13 8 CCCAGCCC
14 15 AGGAGTTCGAGACCA
15 11 CAACATGGCGA
16 12 TGCGCATGCGCA
17 15 AAATTAGCCGGGCGT
18 14 GCGTGAGCCACCGC
19 14 GAGGATCGCTTGAG
20 10 GTCACGTGAC
21 9 AGGAAGCGG
22 12 GTCTCGCGAGAC
23 9 CGGCTGCAG
24 15 CAGCACCACGGACAG
25 14 AGGGAGGGAGGGAG
26 7 AACAAAG
27 6 ACAAAG
28 10 ACCCGGAAGC
29 11 CGCCCCCTCCC
30 13 ACACACACACACA
31 9 GTTGCTATG
32 12 AACCCTGTCTCT
33 13 CTCTGTTGCCCAG
34 12 AGAAAGAAAGAA
35 11 GGCCCCGCCCC
36 8 CCCTTCCC
37 15 GTGAGCCGAGATCGC
38 8 AAATACAA
39 8 TGACGTCA
40 10 CAGCAGCTGC
41 10 GCGCATGCGC
42 9 CTGAGTCAC
43 15 TCTCTACAAAAAAAA
44 15 CCTCCTCCTCCTCCT
45 8 ATAAATAA
46 15 CCACTGCACTCCAGC
47 13 GACCTCGTGATCC
48 10 ATGCAAATGA
49 8 CCCGGCTC
50 11 GGCCCCTTTAA
51 13 ATTCTGGGAAATG
52 14 AGGCAGAGGCGAGG
53 8 CAAGGTCA
54 7 CGAGGCC

Random model letter frequencies (--nrdb--):
A 0.275 C 0.225 G 0.225 T 0.275

SECTION I: HIGH-SCORING MOTIF OCCURENCES
Motif ID Alt ID Sequence Name Strand Start End p-value q-value Matched Sequence
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 8491 8505 1.84e-07 0.00596 AAAAATAAAAAATTA
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 10193 10207 3.8e-07 0.00847 CCCCGCCCGCGTCCC
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 306 320 5.22e-07 0.00847 CCCCTCCCCCGCTTC
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 456 469 5.89e-07 0.0161 CCCCTCCCACTCCC
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 13977 13991 8.31e-07 0.027 CCTGCCCCTACTCCT
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 306 319 1.03e-06 0.0161 CCCCTCCCCCGCTT
11 8-YGCMGCCGCCRC-STREME-8 chrM + 9911 9922 1.43e-06 0.0474 CGAAGCCGCCGC
29 26-CGCCCCCTCCC-STREME-26 chrM + 954 964 1.47e-06 0.0479 CACCCCCTCCC
14 11-AGGAGTTCRAGACCA-STREME-11 chrM - 7932 7946 1.89e-06 0.0626 AGGAGTTGAAGATTA
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 3568 3582 1.94e-06 0.021 CCCCTCCCCATACCC
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 3568 3581 2.06e-06 0.0185 CCCCTCCCCATACC
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 14809 14822 2.66e-06 0.0185 CCCCACCCCATCCA
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 16185 16198 2.94e-06 0.0185 CCCCTCCCCATGCT
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 8775 8789 3.36e-06 0.0547 CCTCCTCGGACTCCT
29 26-CGCCCCCTCCC-STREME-26 chrM + 13578 13588 3.96e-06 0.0633 CGCTACCTCCC
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 13053 13066 4.95e-06 0.0259 CCCCACCCCAGTCT
14 11-AGGAGTTCRAGACCA-STREME-11 chrM - 10702 10716 5.01e-06 0.0828 TGGAGATTGAGACTA
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 13053 13067 5.49e-06 0.0446 CCCCACCCCAGTCTC
29 26-CGCCCCCTCCC-STREME-26 chrM + 7858 7868 5.81e-06 0.0633 CGATCCCTCCC
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 11857 11870 5.85e-06 0.0878 GGGGTAAGGCGAGG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 3522 3535 6.05e-06 0.0272 CACCGCCCCGACCT
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 6220 6233 6.77e-06 0.185 TAGGAGAGAGGGAG
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 3321 3335 6.78e-06 0.0649 CCTCCTACTCCTCAT
31 28-GTTGCTAKG-STREME-28 chrM - 15319 15327 7.34e-06 0.24 GTTGCTAGG
21 18-AGGAAGCGG-STREME-18 chrM - 11536 11544 7.67e-06 0.253 AGGAAGGGG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 15537 15550 7.72e-06 0.0304 CCCCTCCCCACATC
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 11230 11244 7.98e-06 0.0649 CCTTCCCCTACTCAT
13 10-CCCAGCCC-STREME-10 chrM + 9243 9250 8.13e-06 0.161 CCCAGCCC
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 12885 12898 8.15e-06 0.0878 ATGCTAAGGCGAGG
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 456 470 8.26e-06 0.0537 CCCCTCCCACTCCCA
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 14855 14868 8.38e-06 0.0878 AGGCAGGCGCCAAG
46 43-CCACTGCACTCCAGC-STREME-43 chrM + 13072 13086 9.19e-06 0.249 CTACTCCACTCAAGC
15 12-CAASATGGYGR-STREME-12 chrM - 1261 1271 9.64e-06 0.319 GAAGATGGCGG
36 33-CCCTTCCC-STREME-33 chrM + 4456 4463 9.9e-06 0.107 CCCTTCCC
36 33-CCCTTCCC-STREME-33 chrM + 11229 11236 9.9e-06 0.107 CCCTTCCC
48 45-ATGCWAATSA-STREME-45 chrM - 10857 10866 1.03e-05 0.341 ATGCTAATAA
37 34-GTGAGCYGAGATCRY-STREME-34 chrM - 14838 14852 1.08e-05 0.278 GTGAGCCGAAGTTTC
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 13639 13652 1.08e-05 0.0878 GTGGGGAAGCGAGG
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 9521 9535 1.13e-05 0.0605 CCTAGCCCCTACCCC
50 47-KGCCCCTTTAA-STREME-47 chrM + 3778 3788 1.16e-05 0.385 GGCTCCTTTAA
40 37-CAGCAGCTGC-STREME-37 chrM + 12989 12998 1.18e-05 0.284 TAGCAGCAGC
30 27-ACACACACACACA-STREME-27 chrM + 513 525 1.2e-05 0.371 GCACACACACACC
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 16185 16199 1.3e-05 0.0605 CCCCTCCCCATGCTT
9 6-ACTACAAHTCC-STREME-6 chrM + 14687 14697 1.36e-05 0.27 ACTACAACCAC
13 10-CCCAGCCC-STREME-10 chrM + 495 502 1.48e-05 0.161 CCCCGCCC
13 10-CCCAGCCC-STREME-10 chrM + 10193 10200 1.48e-05 0.161 CCCCGCCC
33 30-CTCTGTYGCCCAG-STREME-30 chrM + 6492 6504 1.5e-05 0.497 CTATCTCTCCCAG
46 43-CCACTGCACTCCAGC-STREME-43 chrM + 9512 9526 1.51e-05 0.249 CCACTCCAGCCTAGC
34 31-AGAAAGAAAGAA-STREME-31 chrM + 14654 14665 1.54e-05 0.2 AGAAACAAAGCA
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 14097 14110 1.57e-05 0.185 AGAAAGAGAGGAAG
21 18-AGGAAGCGG-STREME-18 chrM - 7687 7695 1.59e-05 0.263 AGGAAGCAG
9 6-ACTACAAHTCC-STREME-6 chrM + 1524 1534 1.67e-05 0.27 ACTAAAACCCC
40 37-CAGCAGCTGC-STREME-37 chrM + 4627 4636 1.72e-05 0.284 CAGAAGCTGC
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 495 508 1.77e-05 0.0581 CCCCGCCCATCCTA
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 11857 11871 1.78e-05 0.0624 CCTCGCCTTACCCCC
34 31-AGAAAGAAAGAA-STREME-31 chrM + 7449 7460 1.79e-05 0.2 aaaaggaaggaa
7 4-GCCTCRGCCTCCCAA-STREME-4 chrM + 14865 14879 1.81e-05 0.358 GCCTGATCCTCCAAA
34 31-AGAAAGAAAGAA-STREME-31 chrM + 6690 6701 1.84e-05 0.2 GGAAAAAAAGAA
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 13981 13994 1.86e-05 0.0581 CCCCTACTCCTCCT
23 20-CGGCTGCAG-STREME-20 chrM - 98 106 2e-05 0.588 CGGCTCCAG
19 16-GAGRATCRCTTGAR-STREME-16 chrM - 15269 15282 2.03e-05 0.602 AAGAATCGTGTGAG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 7399 7412 2.03e-05 0.0581 CCCCACCCTACCAC
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 10088 10101 2.11e-05 0.185 AGGCTAGGAGGGTG
4 CTGTAATCCCAGCWM-MEME-3 chrM + 2419 2433 2.13e-05 0.462 CTGTCAACCCAACAC
41 38-GCGCATGCGC-STREME-38 chrM + 5971 5980 2.13e-05 0.413 GCGCATGAGC
29 26-CGCCCCCTCCC-STREME-26 chrM + 16182 16192 2.14e-05 0.149 AACCCCCTCCC
1 CCCCGCCCCCSCCCC-MEME-1 chrM - 6568 6582 2.14e-05 0.0624 CTCCTCCTCCGGCGG
47 44-GACCTCGTGATCC-STREME-44 chrM - 7843 7855 2.16e-05 0.374 GACCTCGTCTGTT
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 3580 3594 2.16e-05 0.0624 CCCAACCCCCTGGTC
7 4-GCCTCRGCCTCCCAA-STREME-4 chrM + 5293 5307 2.17e-05 0.358 GCCTCATCATCCCCA
37 34-GTGAGCYGAGATCRY-STREME-34 chrM - 9636 9650 2.24e-05 0.278 GTGAGCTCAGGTGAT
18 15-GCRTGAGCCACYRY-STREME-15 chrM + 887 900 2.25e-05 0.424 GTGCCAGCCACCGC
30 27-ACACACACACACA-STREME-27 chrM + 3203 3215 2.25e-05 0.371 ACCCACACCCACC
47 44-GACCTCGTGATCC-STREME-44 chrM + 15737 15749 2.26e-05 0.374 GACCTCCTCATTC
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 15449 15462 2.27e-05 0.185 AAGGAGAGAAGGAA
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 15677 15691 2.3e-05 0.239 AAACAACAAAGCATA
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 15537 15551 2.37e-05 0.0624 CCCCTCCCCACATCA
29 26-CGCCCCCTCCC-STREME-26 chrM + 303 313 2.4e-05 0.149 CCCCCCCTCCC
14 11-AGGAGTTCRAGACCA-STREME-11 chrM - 5717 5731 2.42e-05 0.267 AGTAGATTGAAGCCA
34 31-AGAAAGAAAGAA-STREME-31 chrM + 357 368 2.43e-05 0.2 AAAAACAAAGAA
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 14809 14823 2.43e-05 0.0624 CCCCACCCCATCCAA
41 38-GCGCATGCGC-STREME-38 chrM - 5971 5980 2.5e-05 0.413 GCTCATGCGC
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 13021 13035 2.5e-05 0.0624 CTCCACCCCTGACTC
24 21-CAGCACCRCGGACAG-STREME-21 chrM + 2111 2125 2.53e-05 0.836 CAGCTCTTTGGACAC
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 3580 3593 2.54e-05 0.0666 CCCAACCCCCTGGT
37 34-GTGAGCYGAGATCRY-STREME-34 chrM - 10429 10443 2.56e-05 0.278 ATGAGTCGAAATCAT
18 15-GCRTGAGCCACYRY-STREME-15 chrM - 7583 7596 2.56e-05 0.424 GCATGTGCCATTAA
32 29-AACCCYRTCTCT-STREME-29 chrM - 7844 7855 2.58e-05 0.43 GACCTCGTCTGT
40 37-CAGCAGCTGC-STREME-37 chrM + 12992 13001 2.63e-05 0.29 CAGCAGCAGG
38 35-AAATACAA-STREME-35 chrM - 14722 14729 2.65e-05 0.875 AAATACAA
15 12-CAASATGGYGR-STREME-12 chrM + 1563 1573 2.83e-05 0.319 TAACATGGTAA
15 12-CAASATGGYGR-STREME-12 chrM + 3232 3242 2.9e-05 0.319 taagatggcag
46 43-CCACTGCACTCCAGC-STREME-43 chrM + 9413 9427 2.93e-05 0.323 CCACCACACACCACC
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 8489 8503 2.93e-05 0.239 ATAAAAATAAAAAAT
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 7031 7045 2.95e-05 0.13 CTTCCACTATGTCCT
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 797 810 3.12e-05 0.0691 CCACACCCCCACGG
13 10-CCCAGCCC-STREME-10 chrM - 6021 6028 3.14e-05 0.195 CCCAGCTC
13 10-CCCAGCCC-STREME-10 chrM + 12557 12564 3.14e-05 0.195 CCCAGCTC
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 7681 7695 3.14e-05 0.13 CCTTATCTGCTTCCT
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 9526 9539 3.17e-05 0.0691 CCCCTACCCCCCAA
45 42-ATAAATAA-STREME-42 chrM - 154 161 3.23e-05 0.972 ATAAATAA
53 50-CAAGGTCA-STREME-50 chrM + 4404 4411 3.26e-05 1 TAAGGTCA
32 29-AACCCYRTCTCT-STREME-29 chrM + 14627 14638 3.27e-05 0.43 AACCCCATTACT
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 8619 8632 3.3e-05 0.0691 CCCCACCTCCAAAT
29 26-CGCCCCCTCCC-STREME-26 chrM + 13120 13130 3.31e-05 0.149 CGCTTCCACCC
31 28-GTTGCTAKG-STREME-28 chrM - 5312 5320 3.34e-05 0.347 GTGGCTATG
21 18-AGGAAGCGG-STREME-18 chrM - 10948 10956 3.36e-05 0.278 AGGAGGGGG
37 34-GTGAGCYGAGATCRY-STREME-34 chrM - 3529 3543 3.38e-05 0.278 GAGAGCTAAGGTCGG
43 40-TCTCTACAAAAAAWA-STREME-40 chrM + 2495 2509 3.45e-05 0.455 TGTTTACCAAAAACA
33 30-CTCTGTYGCCCAG-STREME-30 chrM - 15494 15506 3.52e-05 0.582 CTGGGTCGCCTAG
23 20-CGGCTGCAG-STREME-20 chrM - 6319 6327 3.55e-05 0.588 AGGCTCCAG
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 7399 7413 3.56e-05 0.0825 CCCCACCCTACCACA
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 10968 10981 3.56e-05 0.194 GGGTAGGAGTCAGG
54 51-CGAGGCC-STREME-51 chrM + 15044 15050 3.6e-05 1 CGAGGCC
31 28-GTTGCTAKG-STREME-28 chrM - 792 800 3.61e-05 0.347 GTGGCTAGG
29 26-CGCCCCCTCCC-STREME-26 chrM + 13050 13060 3.63e-05 0.149 AGGCCCCACCC
34 31-AGAAAGAAAGAA-STREME-31 chrM - 14099 14110 3.63e-05 0.239 AGAAAGAGAGGA
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 1483 1496 3.64e-05 0.194 AGGGTGACGGGCGG
29 26-CGCCCCCTCCC-STREME-26 chrM + 10619 10629 3.64e-05 0.149 CACCCACTCCC
30 27-ACACACACACACA-STREME-27 chrM + 14639 14651 3.65e-05 0.401 AAACCCACACTCA
21 18-AGGAAGCGG-STREME-18 chrM - 15025 15033 3.69e-05 0.278 AGGAAGAGG
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 6216 6229 3.78e-05 0.213 AGAGAGGGAGGTAA
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 10193 10206 3.79e-05 0.0708 CCCCGCCCGCGTCC
43 40-TCTCTACAAAAAAWA-STREME-40 chrM + 15067 15081 3.83e-05 0.455 TCTCTACTCAGAAAC
51 48-MTTCTGGGAADTG-STREME-48 chrM - 4235 4247 3.84e-05 1 ATGCTGGAGATTG
4 CTGTAATCCCAGCWM-MEME-3 chrM - 3228 3242 3.85e-05 0.462 CTGCCATCTTAACAA
5 2-CGCCCYCTGSYGGC-STREME-2 chrM + 1262 1275 3.85e-05 0.955 CGCCATCTTCAGCA
32 29-AACCCYRTCTCT-STREME-29 chrM + 8724 8735 3.95e-05 0.43 AACCTGATCTCT
8 5-CTGTAATCCCAGCWM-STREME-5 chrM + 15312 15326 3.97e-05 1 TTGCAGCCCTAGCAA
7 4-GCCTCRGCCTCCCAA-STREME-4 chrM + 4930 4944 4.05e-05 0.445 TCCTCACTCTCTCAA
40 37-CAGCAGCTGC-STREME-37 chrM - 3016 3025 4.15e-05 0.344 TAGCGGCTGC
21 18-AGGAAGCGG-STREME-18 chrM - 14303 14311 4.2e-05 0.278 AGGAAGCTG
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 5890 5904 4.23e-05 0.0915 CCTCACCCCCACTGA
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 305 318 4.23e-05 0.213 AGCGGGGGAGGGGG
36 33-CCCTTCCC-STREME-33 chrM + 306 313 4.24e-05 0.107 CCCCTCCC
36 33-CCCTTCCC-STREME-33 chrM + 307 314 4.24e-05 0.107 CCCTCCCC
36 33-CCCTTCCC-STREME-33 chrM + 456 463 4.24e-05 0.107 CCCCTCCC
36 33-CCCTTCCC-STREME-33 chrM + 957 964 4.24e-05 0.107 CCCCTCCC
36 33-CCCTTCCC-STREME-33 chrM + 958 965 4.24e-05 0.107 CCCTCCCC
36 33-CCCTTCCC-STREME-33 chrM + 3568 3575 4.24e-05 0.107 CCCCTCCC
36 33-CCCTTCCC-STREME-33 chrM + 3569 3576 4.24e-05 0.107 CCCTCCCC
36 33-CCCTTCCC-STREME-33 chrM + 15537 15544 4.24e-05 0.107 CCCCTCCC
36 33-CCCTTCCC-STREME-33 chrM + 15538 15545 4.24e-05 0.107 CCCTCCCC
36 33-CCCTTCCC-STREME-33 chrM + 16185 16192 4.24e-05 0.107 CCCCTCCC
36 33-CCCTTCCC-STREME-33 chrM + 16186 16193 4.24e-05 0.107 CCCTCCCC
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 16446 16459 4.24e-05 0.194 GGCCCGGAGCGAGG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 957 970 4.25e-05 0.0708 CCCCTCCCCAATAA
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 6224 6238 4.32e-05 0.13 CTCTCTCCTACTCCT
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 15331 15345 4.32e-05 0.13 CCACCTCCTATTCTT
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 8444 8458 4.35e-05 0.239 AAAATATTAAACACA
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 15379 15392 4.41e-05 0.0708 CACCTCCCATTCCG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 13647 13660 4.44e-05 0.0708 CCCCACCCTTACTA
31 28-GTTGCTAKG-STREME-28 chrM - 10939 10947 4.5e-05 0.347 GTTGTTAGG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 1236 1249 4.5e-05 0.0708 CACCACCTCTTGCT
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 8498 8512 4.5e-05 0.239 AAAAATTATAACAAA
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 3963 3977 4.53e-05 0.13 CTTCGCCCTATTCTT
12 9-RGCCAATSAGMR-STREME-9 chrM + 5660 5671 4.57e-05 0.537 GACCAATGGGAC
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 494 507 4.62e-05 0.213 AGGATGGGCGGGGG
18 15-GCRTGAGCCACYRY-STREME-15 chrM + 8387 8400 4.65e-05 0.513 GTATGGCCCACCAT
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 495 509 4.69e-05 0.094 CCCCGCCCATCCTAC
43 40-TCTCTACAAAAAAWA-STREME-40 chrM - 9793 9807 4.7e-05 0.455 TGGCTACAAAAAATG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 9243 9256 4.73e-05 0.0708 CCCAGCCCATGACC
13 10-CCCAGCCC-STREME-10 chrM + 5433 5440 4.76e-05 0.195 CCCACCCC
13 10-CCCAGCCC-STREME-10 chrM + 13054 13061 4.76e-05 0.195 CCCACCCC
13 10-CCCAGCCC-STREME-10 chrM + 14810 14817 4.76e-05 0.195 CCCACCCC
12 9-RGCCAATSAGMR-STREME-9 chrM + 15707 15718 4.78e-05 0.537 AGCCAATCACTT
49 46-CCCGGCTC-STREME-46 chrM - 2695 2702 4.81e-05 1 CCCGCCTC
12 9-RGCCAATSAGMR-STREME-9 chrM + 15950 15961 4.88e-05 0.537 GACAAATCAGAG
35 32-GGCCCCGCCCC-STREME-32 chrM + 3525 3535 4.89e-05 1 CGCCCCGACCT
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 16446 16460 4.92e-05 0.094 CCTCGCTCCGGGCCC
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 6219 6232 4.97e-05 0.194 AGGAGAGAGGGAGG
39 36-TGAYRTCA-STREME-36 chrM + 13224 13231 5.04e-05 0.398 TGACATCA
39 36-TGAYRTCA-STREME-36 chrM - 13224 13231 5.04e-05 0.398 TGATGTCA
2 AAAAWAMAAAAAWWA-MEME-2 chrM - 395 409 5.05e-05 0.239 CAAAAGATAAAATTT
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 3259 3273 5.16e-05 0.239 aaaacttaaaacttt
31 28-GTTGCTAKG-STREME-28 chrM - 2962 2970 5.32e-05 0.347 GTTGATATG
40 37-CAGCAGCTGC-STREME-37 chrM + 15117 15126 5.46e-05 0.356 TAGCAACAGC
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 14335 14348 5.53e-05 0.0759 CACCACCCCATCAT
43 40-TCTCTACAAAAAAWA-STREME-40 chrM + 4598 4612 5.53e-05 0.455 TCTAACCAAAAAAAT
25 22-AGGGAGGGAGGGAG-STREME-22 chrM + 1790 1803 5.62e-05 0.213 AGGGAAAGATGAAA
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 13244 13258 5.65e-05 0.13 CCTTCTCCACTTCAA
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 9640 9653 5.66e-05 0.194 ATGGTGAGCTCAGG
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 5730 5744 5.66e-05 0.101 CTTCTCCCGCCGCCG
21 18-AGGAAGCGG-STREME-18 chrM - 15331 15339 5.71e-05 0.293 AGGAGGTGG
5 2-CGCCCYCTGSYGGC-STREME-2 chrM + 9968 9981 5.77e-05 0.955 CTCCATCTATTGAT
3 1-CCCCGCCCCCNCCC-STREME-1 chrM - 6569 6582 5.8e-05 0.0759 CTCCTCCTCCGGCG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 2834 2847 5.8e-05 0.0759 CCCAACCTCCGAGC
9 6-ACTACAAHTCC-STREME-6 chrM + 14732 14742 5.85e-05 0.41 ACTACAAGAAC
19 16-GAGRATCRCTTGAR-STREME-16 chrM - 16008 16021 5.86e-05 0.602 GAGAATAGTTTAAA
45 42-ATAAATAA-STREME-42 chrM + 5033 5040 5.88e-05 0.972 ATGAATAA
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 14413 14427 5.93e-05 0.101 CTCAACCCCTGACCC
37 34-GTGAGCYGAGATCRY-STREME-34 chrM - 5881 5895 5.97e-05 0.393 GTGAGGTAAAATGGC
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 13032 13045 5.97e-05 0.194 TGGCTGAGGGGAGT
4 CTGTAATCCCAGCWM-MEME-3 chrM + 9679 9693 6.01e-05 0.462 AAATAATTCAAGCAC
4 CTGTAATCCCAGCWM-MEME-3 chrM + 12836 12850 6.07e-05 0.462 CAGCCATTCAAGCAA
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 8490 8504 6.12e-05 0.248 TAAAAATAAAAAATT
9 6-ACTACAAHTCC-STREME-6 chrM + 14582 14592 6.19e-05 0.41 ACTAAACCCCC
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 144 158 6.29e-05 0.13 CCTCATCCTATTATT
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 14097 14111 6.29e-05 0.13 CTTCCTCTCTTTCTT
30 27-ACACACACACACA-STREME-27 chrM + 5674 5686 6.3e-05 0.428 AAACCCACAAACA
7 4-GCCTCRGCCTCCCAA-STREME-4 chrM + 13844 13858 6.33e-05 0.445 ACCTCAACTACCTAA
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 13758 13772 6.34e-05 0.101 CGCATCCCCCTTCCA
19 16-GAGRATCRCTTGAR-STREME-16 chrM - 12842 12855 6.39e-05 0.602 TAGGATTGCTTGAA
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 10917 10930 6.41e-05 0.0806 CCCCAACCTTTTCC
40 37-CAGCAGCTGC-STREME-37 chrM - 6507 6516 6.45e-05 0.356 CAGCAGCTAG
30 27-ACACACACACACA-STREME-27 chrM + 795 807 6.49e-05 0.428 AGCCACACCCCCA
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 15445 15459 6.51e-05 0.13 TCTCTTCCTTCTCTC
53 50-CAAGGTCA-STREME-50 chrM - 7993 8000 6.51e-05 1 CAACGTCA
9 6-ACTACAAHTCC-STREME-6 chrM + 12584 12594 6.53e-05 0.41 ACTACTTCTCC
10 7-GTTGCCATGGCAAC-STREME-7 chrM + 15314 15327 6.6e-05 1 GCAGCCCTAGCAAC
10 7-GTTGCCATGGCAAC-STREME-7 chrM - 15314 15327 6.6e-05 1 GTTGCTAGGGCTGC
24 21-CAGCACCRCGGACAG-STREME-21 chrM - 6502 6516 6.63e-05 0.898 CAGCAGCTAGGACTG
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 14105 14118 6.74e-05 0.213 TGGGAAGAAGAAAG
18 15-GCRTGAGCCACYRY-STREME-15 chrM - 2548 2561 6.76e-05 0.559 ACATGTGTCACTGG
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 15286 15300 6.86e-05 0.13 CTTTCACTTCATCTT
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 11234 11247 6.88e-05 0.0817 CCCCTACTCATCGC
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 9243 9257 6.89e-05 0.101 CCCAGCCCATGACCC
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 15016 15030 6.92e-05 0.13 CTTTATCTGCCTCTT
15 12-CAASATGGYGR-STREME-12 chrM - 4501 4511 6.97e-05 0.577 AAAGATGGTAG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 3527 3540 7.02e-05 0.0817 CCCCGACCTTAGCT
21 18-AGGAAGCGG-STREME-18 chrM + 16034 16042 7.03e-05 0.293 GGGAAGCAG
4 CTGTAATCCCAGCWM-MEME-3 chrM + 8822 8836 7.03e-05 0.462 CTATAAACCTAGCCA
50 47-KGCCCCTTTAA-STREME-47 chrM - 2531 2541 7.07e-05 1 GGTGCCTCTAA
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 16354 16368 7.08e-05 0.13 CCTTCTCGTCCCCAT
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 2488 2502 7.09e-05 0.101 CCCCGCCTGTTTACC
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 5395 5409 7.14e-05 0.255 ACAACGTAAAAATAA
1 CCCCGCCCCCSCCCC-MEME-1 chrM + 1677 1691 7.15e-05 0.101 CCTAGCCCCAAACCC
21 18-AGGAAGCGG-STREME-18 chrM - 9916 9924 7.21e-05 0.293 AGGCGGCGG
39 36-TGAYRTCA-STREME-36 chrM + 3178 3185 7.22e-05 0.398 TGATATCA
39 36-TGAYRTCA-STREME-36 chrM - 3178 3185 7.22e-05 0.398 TGATATCA
39 36-TGAYRTCA-STREME-36 chrM + 6733 6740 7.22e-05 0.398 TGATATCA
39 36-TGAYRTCA-STREME-36 chrM - 6733 6740 7.22e-05 0.398 TGATATCA
17 14-AAATTAGCYRGGCRT-STREME-14 chrM + 11468 11482 7.22e-05 1 AAACTAGGCGGCTAT
7 4-GCCTCRGCCTCCCAA-STREME-4 chrM + 13441 13455 7.22e-05 0.445 ACTTCAACCTCCCTC
19 16-GAGRATCRCTTGAR-STREME-16 chrM + 9632 9645 7.29e-05 0.602 ATCAATCACCTGAG
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 13576 13589 7.29e-05 0.213 AGGGAGGTAGCGAT
35 32-GGCCCCGCCCC-STREME-32 chrM + 13051 13061 7.32e-05 1 GGCCCCACCCC
8 5-CTGTAATCCCAGCWM-STREME-5 chrM + 5980 5994 7.32e-05 1 CTGGAGTCCTAGGCA
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 14373 14386 7.47e-05 0.213 AGCGATGGAGGTAG
13 10-CCCAGCCC-STREME-10 chrM + 3580 3587 7.55e-05 0.247 CCCAACCC
13 10-CCCAGCCC-STREME-10 chrM + 4483 4490 7.55e-05 0.247 CCCAACCC
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 13021 13034 7.58e-05 0.0851 CTCCACCCCTGACT
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 15442 15456 7.6e-05 0.13 ACTTCTCTTCCTTCT
9 6-ACTACAAHTCC-STREME-6 chrM + 8440 8450 7.66e-05 0.41 ACTAAAAATAT
46 43-CCACTGCACTCCAGC-STREME-43 chrM + 12904 12918 7.72e-05 0.488 ATCCTACACTCCAAC
48 45-ATGCWAATSA-STREME-45 chrM - 10477 10486 7.73e-05 1 ATGTAAATGA
28 25-ACCCGGAAGY-STREME-25 chrM + 13710 13719 7.81e-05 1 AGCCGGAAGC
51 48-MTTCTGGGAADTG-STREME-48 chrM - 566 578 7.82e-05 1 ACTGTGGGGGGTG
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM - 14593 14607 7.86e-05 0.13 CCTTCTCCTATTTAT
32 29-AACCCYRTCTCT-STREME-29 chrM - 645 656 7.88e-05 0.598 AAACCTATTTGT
26 23-AACAAAG-STREME-23 chrM + 360 366 7.93e-05 0.869 AACAAAG
26 23-AACAAAG-STREME-23 chrM + 14657 14663 7.93e-05 0.869 AACAAAG
26 23-AACAAAG-STREME-23 chrM + 15681 15687 7.93e-05 0.869 AACAAAG
46 43-CCACTGCACTCCAGC-STREME-43 chrM + 6586 6600 7.93e-05 0.488 CCATTCTATACCAAC
21 18-AGGAAGCGG-STREME-18 chrM - 14983 14991 7.98e-05 0.293 AGGTAGCGG
29 26-CGCCCCCTCCC-STREME-26 chrM + 11225 11235 8.04e-05 0.252 GGCTCCCTTCC
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 7807 7821 8.05e-05 0.13 CCTCATCGCCCTCCC
7 4-GCCTCRGCCTCCCAA-STREME-4 chrM + 14799 14813 8.09e-05 0.445 TCATCGACCTCCCCA
24 21-CAGCACCRCGGACAG-STREME-21 chrM - 8578 8592 8.14e-05 0.898 CAGTACTGCGGCGGG
30 27-ACACACACACACA-STREME-27 chrM + 515 527 8.19e-05 0.44 ACACACACACCGC
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 298 311 8.24e-05 0.0893 CCAAACCCCCCCTC
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 10203 10216 8.29e-05 0.213 ATGGAGAAAGGGAC
29 26-CGCCCCCTCCC-STREME-26 chrM + 4050 4060 8.48e-05 0.252 CGCACTCTCCC
25 22-AGGGAGGGAGGGAG-STREME-22 chrM - 4099 4112 8.48e-05 0.213 AGGGAGGTTAGAAG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 3574 3587 8.62e-05 0.0903 CCCATACCCAACCC
18 15-GCRTGAGCCACYRY-STREME-15 chrM - 3709 3722 8.69e-05 0.575 GTTTGGGCTACTGC
40 37-CAGCAGCTGC-STREME-37 chrM - 6243 6252 8.72e-05 0.412 TAGCAGATGC
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 15433 15447 8.75e-05 0.13 CCTCGGCTTACTTCT
23 20-CGGCTGCAG-STREME-20 chrM - 15312 15320 8.78e-05 0.968 GGGCTGCAA
52 49-AGGCAGAGGCGAGG-STREME-49 chrM - 9521 9534 8.79e-05 0.26 GGGTAGGGGCTAGG
37 34-GTGAGCYGAGATCRY-STREME-34 chrM - 15429 15443 8.83e-05 0.484 GTAAGCCGAGGGCGT
46 43-CCACTGCACTCCAGC-STREME-43 chrM + 5107 5121 8.87e-05 0.488 CTACCGCATTCCTAC
31 28-GTTGCTAKG-STREME-28 chrM - 9060 9068 8.88e-05 0.414 ATTGCTAGG
31 28-GTTGCTAKG-STREME-28 chrM - 15646 15654 8.88e-05 0.414 ATTGCTAGG
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 13980 13994 8.89e-05 0.13 GCCCCTACTCCTCCT
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 14112 14126 8.89e-05 0.13 CTTCCCACTCATCCT
9 6-ACTACAAHTCC-STREME-6 chrM + 3441 3451 8.9e-05 0.41 ACTACAACCCT
16 13-YGCGCATGCGCR-STREME-13 chrM + 2433 2444 8.96e-05 1 CAGGCATGCTCA
16 13-YGCGCATGCGCR-STREME-13 chrM - 2433 2444 8.96e-05 1 TGAGCATGCCTG
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 2229 2243 8.97e-05 0.255 AAAATCCCAAACATA
45 42-ATAAATAA-STREME-42 chrM + 10485 10492 9.11e-05 1 ATAAATAT
29 26-CGCCCCCTCCC-STREME-26 chrM + 2538 2548 9.11e-05 0.252 CACCGCCTGCC
32 29-AACCCYRTCTCT-STREME-29 chrM + 335 346 9.15e-05 0.598 AAACACATCTCT
25 22-AGGGAGGGAGGGAG-STREME-22 chrM + 5747 5760 9.23e-05 0.216 AAAAAAGGCGGGAG
29 26-CGCCCCCTCCC-STREME-26 chrM + 3206 3216 9.27e-05 0.252 CACACCCACCC
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 4605 4619 9.31e-05 0.255 AAAAAAATAAACCCT
11 8-YGCMGCCGCCRC-STREME-8 chrM + 3015 3026 9.33e-05 1 TGCAGCCGCTAT
30 27-ACACACACACACA-STREME-27 chrM + 6800 6812 9.34e-05 0.44 AGACACACGAGCA
2 AAAAWAMAAAAAWWA-MEME-2 chrM + 1801 1815 9.44e-05 0.255 AAAAATTATAACCAA
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 308 322 9.52e-05 0.13 CCTCCCCCGCTTCTG
54 51-CGAGGCC-STREME-51 chrM - 2567 2573 9.53e-05 1 CGCGGCC
44 41-CCTCCTCCTCCTCCT-STREME-41 chrM + 4850 4864 9.59e-05 0.13 CCTGCTTCTTCTCAC
50 47-KGCCCCTTTAA-STREME-47 chrM - 15876 15886 9.62e-05 1 GGCCCATTTGA
21 18-AGGAAGCGG-STREME-18 chrM - 12981 12989 9.63e-05 0.318 AGGAGGAGG
43 40-TCTCTACAAAAAAWA-STREME-40 chrM - 11364 11378 9.77e-05 0.642 TCTTTACTATAAAAG
3 1-CCCCGCCCCCNCCC-STREME-1 chrM + 10949 10962 9.95e-05 0.101 CCCCTCCTAATACT
6 3-RCCGGAAGTGR-STREME-3 chrM - 14094 14104 9.95e-05 1 AGAGGAAGTAA
DEBUGGING INFORMATION

Command line: 

/oak/stanford/groups/akundaje/marinovg/programs/meme_4.12.0/meme/bin/fimo --oc FIMO-Control_4_FGFR1_GSM2439179-MEMECHIP /oak/stanford/groups/akundaje/marinovg/various/2020-12-05-FGFR1-chrM/Control_4_FGFR1_GSM2439179-appMEMECHIP_5.3.01607328249702711587880/combined.meme /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bowtie-indexes/chrM.fa

Settings: 


  

    output_directory = FIMO-Control_4_FGFR1_GSM2439179-MEMECHIP
    MEME file name = /oak/stanford/groups/akundaje/marinovg/various/2020-12-05-FGFR1-chrM/Control_4_FGFR1_GSM2439179-appMEMECHIP_5.3.01607328249702711587880/combined.meme
    sequence file name = /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bowtie-indexes/chrM.fa
  
  

    background file name = --nrdb--
    alphabet = DNA
    max stored scores = 100000
  
  

    allow clobber = true
    compute q-values = true
    parse genomic coord. = false
  

  

    text only = false
    scan both strands = true
    max strand = false
  

  

    threshold type = p-value
    output theshold = 0.0001
    pseudocount = 0.1
  

  

    alpha = 1
    verbosity = 2

This information can be useful in the event you wish to report a problem with the FIMO software.

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