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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks114.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks114.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks114.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks115.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks115.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks115.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks116.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks116.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks116.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks117.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks117.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks117.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks118.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks118.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks118.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks119.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks119.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks119.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks11.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks11.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks11.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks120.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks120.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks120.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks121.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks121.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks121.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks122.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks122.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks122.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks123.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks123.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks123.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks124.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks124.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks124.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks125.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks125.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks125.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks126.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks126.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks126.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks127.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks127.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks127.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks128.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks128.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks128.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks129.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks129.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks129.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks12.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks12.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks12.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks130.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks130.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks130.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks131.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks131.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks131.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks132.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks132.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks132.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks133.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks133.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks133.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks134.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks134.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks134.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks135.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks135.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks135.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks136.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks136.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks136.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks137.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks137.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks137.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks138.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks138.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks138.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks139.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks139.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks139.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks13.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks13.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks13.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks140.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks140.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks140.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks141.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks141.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks141.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks142.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks142.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks142.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks143.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks143.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks143.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks144.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks144.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks144.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks145.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks145.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks145.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks146.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks146.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks146.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks147.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks147.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks147.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks148.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks148.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks148.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks149.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks149.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks149.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks14.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks14.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks14.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks150.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks150.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks150.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks151.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks151.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks151.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks152.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks152.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks152.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks153.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks153.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks153.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks154.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks154.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks154.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks155.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks155.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks155.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks156.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks156.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks156.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks157.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks157.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks157.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks158.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks158.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks158.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks159.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks159.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks159.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks15.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks15.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks15.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks160.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks160.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks160.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks161.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks161.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks161.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks162.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks162.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks162.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks163.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks163.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks163.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks164.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks164.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks164.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks165.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks165.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks165.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks166.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks166.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks166.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks167.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks167.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks167.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks168.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks168.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks168.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks169.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks169.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks169.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks16.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks16.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks16.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks170.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks170.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks170.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks171.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks171.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks171.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks172.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks172.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks172.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks173.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks173.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks173.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks174.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks174.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks174.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks175.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks175.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks175.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks176.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks176.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks176.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks177.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks177.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks177.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks178.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks178.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks178.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks179.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks179.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks179.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks17.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks17.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks17.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks180.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks180.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks180.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks181.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks181.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks181.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks182.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks182.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks182.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks183.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks183.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks183.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks184.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks184.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks184.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks185.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks185.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks185.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks186.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks186.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks186.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks187.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks187.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks187.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks188.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks188.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks188.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks189.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks189.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks189.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks18.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks18.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks18.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks190.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks190.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks190.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks191.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks191.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks191.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks192.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks192.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks192.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks193.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks193.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks193.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks194.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks194.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks194.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks195.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks195.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks195.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks196.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks196.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks196.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks197.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks197.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks197.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks198.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks198.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks198.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks199.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks199.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks199.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks19.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks19.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks19.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks1.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks1.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks1.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks200.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks200.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks200.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks201.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks201.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks202.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks202.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks203.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks203.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks204.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks204.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks205.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks205.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks206.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks206.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks207.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks207.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks208.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks208.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks209.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks209.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks20.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks20.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks20.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks210.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks210.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks211.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks211.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks212.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks212.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks213.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks213.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks214.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks214.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks215.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks215.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks216.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks216.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks217.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks217.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks218.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks218.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks219.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks219.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks21.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks21.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks21.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks220.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks220.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks221.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks221.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks222.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks222.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks223.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks223.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks224.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks224.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks224.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks225.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks225.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks225.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks226.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks226.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks226.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks227.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks227.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks227.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks228.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks228.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks228.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks22.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks22.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks22.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks23.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks23.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks23.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks24.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks24.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks24.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks25.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks25.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks25.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks26.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks26.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks26.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks27.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks27.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks27.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks28.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks28.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks28.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks29.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks29.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks29.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks2.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks2.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks2.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks30.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks30.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks30.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks31.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks31.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks31.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks32.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks32.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks32.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks33.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks33.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks33.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks34.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks34.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks34.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks35.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks35.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks35.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks36.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks36.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks36.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks37.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks37.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks37.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks38.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks38.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks38.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks39.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks39.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks39.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks3.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks3.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks3.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks40.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks40.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks40.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks41.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks41.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks41.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks42.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks42.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks42.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks43.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks43.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks43.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks44.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks44.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks44.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks45.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks45.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks45.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks46.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks46.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks46.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks47.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks47.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks47.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks48.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks48.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks48.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks49.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks49.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks49.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks4.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks4.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks4.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks50.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks50.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks50.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks51.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks51.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks51.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks52.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks52.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks52.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks53.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks53.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks53.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks54.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks54.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks54.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks55.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks55.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks55.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks56.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks56.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks56.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks57.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks57.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks57.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks58.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks58.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks58.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks59.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks59.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks59.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks5.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks5.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks5.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks60.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks60.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks60.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks61.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks61.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks61.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks62.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks62.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks62.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks63.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks63.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks63.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks64.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks64.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks64.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks65.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks65.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks65.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks66.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks66.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks66.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks67.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks67.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks67.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks68.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks68.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks68.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks69.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks69.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks69.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks6.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks6.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks6.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks70.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks70.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks70.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks71.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks71.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks71.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks72.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks72.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks72.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks73.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks73.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks73.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks74.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks74.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks74.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks75.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks75.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks75.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks76.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks76.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks76.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks77.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks77.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks77.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks78.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks78.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks78.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks79.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks79.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks79.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks7.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks7.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks7.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks80.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks80.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks80.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks81.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks81.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks81.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks82.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks82.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks82.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks83.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks83.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks83.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks84.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks84.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks84.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks85.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks85.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks85.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks86.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks86.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks86.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks87.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks87.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks87.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks88.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks88.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks88.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks89.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks89.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks89.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks8.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks8.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks8.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks90.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks90.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks90.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks91.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks91.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks91.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks92.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks92.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks92.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks93.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks93.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks93.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks94.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks94.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks94.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks95.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks95.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks95.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks96.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks96.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks96.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks97.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks97.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks97.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks98.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks98.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks98.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks99.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks99.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks99.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks9.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks9.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks9.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks100.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks100.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks100.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks101.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks101.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks101.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks102.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks102.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks102.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks103.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks103.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks103.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks104.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks104.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks104.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks105.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks105.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks105.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks106.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks106.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks106.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks107.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks107.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks107.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks108.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks108.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks108.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks109.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks109.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks109.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks10.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks10.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks10.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks110.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks110.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks110.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks111.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks111.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks111.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks112.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks112.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks112.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks113.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks113.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks113.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks114.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks114.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks114.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks11.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks11.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks11.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks12.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks12.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks12.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks13.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks13.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks13.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks14.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks14.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks14.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks15.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks15.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks15.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks16.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks16.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks16.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks17.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks17.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks17.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks18.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks18.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks18.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks19.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks19.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks19.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks1.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks1.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks1.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks20.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks20.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks20.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks21.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks21.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks21.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks22.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks22.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks22.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks23.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks23.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks23.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks24.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks24.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks24.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks25.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks25.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks25.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks26.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks26.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks26.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks27.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks27.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks27.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks28.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks28.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks28.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks29.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks29.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks29.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks2.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks2.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks2.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks30.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks30.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks30.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks31.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks31.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks31.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks32.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks32.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks32.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks33.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks33.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks33.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks34.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks34.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks34.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks35.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks35.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks35.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks36.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks36.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks36.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks37.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks37.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks37.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks38.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks38.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks38.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks39.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks39.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks39.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks3.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks3.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks3.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks40.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks40.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks40.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks41.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks41.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks41.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks42.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks42.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks42.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks43.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks43.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks43.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks44.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks44.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks44.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks45.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks45.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks45.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks46.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks46.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks46.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks47.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks47.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks47.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks48.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks48.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks48.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks49.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks49.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks49.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks4.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks4.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks4.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks50.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks50.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks50.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks51.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks51.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks51.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks52.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks52.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks52.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks53.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks53.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks53.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks54.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks54.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks54.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks55.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks55.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks55.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks56.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks56.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks56.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks57.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks57.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks57.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks58.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks58.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks58.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks59.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks59.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks59.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks5.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks5.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks5.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks60.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks60.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks60.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks61.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks61.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks61.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks62.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks62.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks62.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks63.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks63.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks63.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks64.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks64.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks64.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks65.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks65.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks65.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks66.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks66.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks66.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks67.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks67.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks67.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks68.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks68.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks68.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks69.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks69.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks69.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks6.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks6.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks6.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks70.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks70.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks70.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks71.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks71.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks71.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks72.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks72.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks72.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks73.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks73.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks73.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks74.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks74.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks74.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks75.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks75.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks75.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks76.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks76.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks76.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks77.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks77.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks77.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks78.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks78.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks78.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks79.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks79.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks79.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks7.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks7.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks7.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks80.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks80.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks80.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks81.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks81.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks81.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks82.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks82.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks82.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks83.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks83.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks83.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks84.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks84.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks84.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks85.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks85.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks85.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks86.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks86.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks86.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks87.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks87.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks87.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks88.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks88.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks88.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks89.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks89.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks89.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks8.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks8.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks8.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks90.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks90.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/hard_filtered_transcripts.min60aa_standardCode_ORF.chunks90.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks105.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks105.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks105.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks106.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks106.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks106.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks107.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks107.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks107.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks108.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks108.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks108.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks109.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks109.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks109.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks10.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks10.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks10.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks110.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks110.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks110.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks111.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks111.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks111.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks112.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks112.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks112.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks113.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks113.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks113.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks114.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks114.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks114.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks115.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks115.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks115.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks116.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks116.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks116.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks117.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks117.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks117.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks118.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks118.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks118.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks119.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks119.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks119.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks11.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks11.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks11.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks120.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks120.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks120.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks121.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks121.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks121.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks122.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks122.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks122.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks123.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks123.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks123.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks124.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks124.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks124.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks125.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks125.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks125.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks126.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks126.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks126.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks127.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks127.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks127.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks128.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks128.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks128.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks129.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks129.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks129.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks12.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks12.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks12.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks130.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks130.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks130.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks131.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks131.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks131.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks132.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks132.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks132.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks133.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks133.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks133.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks134.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks134.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks134.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks135.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks135.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks135.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks136.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks136.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks136.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks137.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks137.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks137.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks138.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks138.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks138.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks139.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks139.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks139.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks13.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks13.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks13.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks140.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks140.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks140.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks141.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks141.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks141.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks142.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks142.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks142.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks143.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks143.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks143.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks144.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks144.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks144.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks145.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks145.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks145.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks146.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks146.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks146.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks147.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks147.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks147.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks148.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks148.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks148.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks149.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks149.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks149.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks14.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks14.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks14.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks150.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks150.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks150.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks151.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks151.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks151.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks152.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks152.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks152.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks153.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks153.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks153.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks154.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks154.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks154.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks155.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks155.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks155.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks156.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks156.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks156.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks157.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks157.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks157.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks158.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks158.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks158.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks159.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks159.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks159.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks15.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks15.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks15.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks160.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks160.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks160.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks161.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks161.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks161.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks162.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks162.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks162.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks163.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks163.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks163.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks164.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks164.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks164.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks165.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks165.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks165.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks166.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks166.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks166.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks167.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks167.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks167.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks168.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks168.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks168.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks169.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks169.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks169.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks16.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks16.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks16.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks170.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks170.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks170.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks171.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks171.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks171.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks172.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks172.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks172.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks173.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks173.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks173.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks174.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks174.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks174.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks175.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks175.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks175.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks176.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks176.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks176.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks177.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks177.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks177.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks178.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks178.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks178.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks179.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks179.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks179.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks17.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks17.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks17.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks180.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks180.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks180.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks181.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks181.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks181.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks182.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks182.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks182.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks183.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks183.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks183.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks184.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks184.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks184.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks185.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks185.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks185.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks186.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks186.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks186.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks187.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks187.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks187.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks188.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks188.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks188.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks189.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks189.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks189.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks18.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks18.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks18.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks190.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks190.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks190.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks191.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks191.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks191.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks192.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks192.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks192.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks193.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks193.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks193.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks194.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks194.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks194.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks195.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks195.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks195.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks196.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks196.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks196.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks197.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks197.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks197.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks198.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks198.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks198.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks199.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks199.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks199.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks19.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks19.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks19.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks1.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks1.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks1.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks200.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks200.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks200.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks201.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks201.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks201.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks202.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks202.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks202.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks203.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks203.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks203.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks204.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks204.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks204.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks205.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks205.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks205.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks206.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks206.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks206.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks207.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks207.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks207.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks208.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks208.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks208.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks209.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks209.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks209.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks20.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks20.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks20.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks210.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks210.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks211.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks211.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks211.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks212.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks212.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks212.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks213.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks213.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks213.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks214.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks214.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks214.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks215.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks215.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks215.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks216.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks216.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks216.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks217.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks217.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks217.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks218.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks218.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks218.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks219.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks219.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks219.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks21.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks21.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks21.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks220.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks220.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks220.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks221.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks221.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks221.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks222.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks222.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks222.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks223.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks223.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks223.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks224.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks224.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks224.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks225.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks225.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks225.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks226.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks226.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks226.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks227.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks227.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks227.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks228.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks228.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks228.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks22.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks22.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks22.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks23.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks23.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks23.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks24.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks24.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks24.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks25.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks25.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks25.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks26.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks26.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks26.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks27.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks27.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks27.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks28.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks28.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks28.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks29.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks29.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks29.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks2.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks2.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks2.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks30.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks30.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks30.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks31.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks31.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks31.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks32.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks32.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks32.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks33.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks33.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks33.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks34.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks34.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks34.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks35.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks35.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks35.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks36.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks36.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks36.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks37.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks37.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks37.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks38.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks38.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks38.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks39.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks39.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks39.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks3.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks3.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks3.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks40.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks40.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks40.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks41.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks41.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks41.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks42.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks42.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks42.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks43.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks43.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks43.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks44.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks44.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks44.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks45.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks45.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks45.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks46.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks46.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks46.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks47.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks47.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks47.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks48.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks48.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks48.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks49.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks49.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks49.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks4.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks4.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks4.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks50.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks50.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks50.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks51.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks51.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks51.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks52.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks52.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks52.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks53.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks53.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks53.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks54.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks54.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks54.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks55.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks55.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks55.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks56.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks56.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks56.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks57.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks57.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks57.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks58.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks58.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks58.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks59.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks59.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks59.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks5.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks5.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks5.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks60.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks60.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks60.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks61.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks61.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks61.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks62.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks62.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks62.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks63.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks63.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks63.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks64.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks64.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks64.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks65.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks65.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks65.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks66.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks66.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks66.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks67.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks67.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks67.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks68.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks68.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks68.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks69.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks69.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks69.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks6.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks6.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks6.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks70.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks70.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks70.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks71.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks71.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks71.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks72.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks72.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks72.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks73.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks73.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks73.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks74.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks74.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks74.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks75.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks75.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks75.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks76.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks76.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks76.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks77.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks77.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks77.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks78.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks78.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks78.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks79.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks79.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks79.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks7.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks7.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks7.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks80.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks80.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks80.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks81.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks81.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks81.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks82.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks82.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks82.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks83.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks83.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks83.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks84.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks84.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks84.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks85.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks85.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks85.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks86.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks86.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks86.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks87.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks87.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks87.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks88.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks88.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks88.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks89.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks89.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks89.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks8.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks8.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks8.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks90.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks90.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks90.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks91.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks91.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks91.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks92.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks92.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks92.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks93.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks93.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks93.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks94.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks94.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks94.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks95.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks95.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks95.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks96.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks96.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks96.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks97.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks97.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks97.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks98.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks98.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks98.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks99.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks99.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks99.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks9.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks9.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.6frame.chunks9.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks100.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks100.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks100.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks101.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks101.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks101.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks102.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks102.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks102.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks103.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks103.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks103.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks104.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks104.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks104.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks105.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks105.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks105.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks106.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks106.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks106.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks107.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks107.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks107.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks108.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks108.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks108.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks109.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks109.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks109.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks10.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks10.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks10.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks110.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks110.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks110.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks111.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks111.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks111.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks112.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks112.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks112.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks113.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks113.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks113.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks114.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks114.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks114.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks11.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks11.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks11.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks12.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks12.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks12.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks13.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks13.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks13.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks14.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks14.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks14.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks15.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks15.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks15.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks16.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks16.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks16.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks17.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks17.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks17.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks18.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks18.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks18.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks19.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks19.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks19.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks1.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks1.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks1.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks20.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks20.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks20.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks21.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks21.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks21.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks22.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks22.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks22.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks23.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks23.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks23.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks24.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks24.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks24.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks25.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks25.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks25.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks26.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks26.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks26.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks27.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks27.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks27.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks28.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks28.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks28.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks29.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks29.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks29.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks2.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks2.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks2.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks30.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks30.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks30.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks31.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks31.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks31.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks32.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks32.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks32.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks33.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks33.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks33.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks34.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks34.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks34.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks35.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks35.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks35.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks36.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks36.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks36.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks37.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks37.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks37.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks38.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks38.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks38.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks39.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks39.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks39.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks3.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks3.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks3.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks40.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks40.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks40.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks41.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks41.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks41.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks42.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks42.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks42.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks43.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks43.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks43.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks44.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks44.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks44.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks45.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks45.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks45.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks46.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks46.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks46.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks47.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks47.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks47.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks48.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks48.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks48.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks49.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks49.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks49.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks4.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks4.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks4.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks50.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks50.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks50.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks51.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks51.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks51.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks52.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks52.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks52.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks53.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks53.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks53.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks54.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks54.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks54.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks55.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks55.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks55.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks56.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks56.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks56.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks57.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks57.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks57.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks58.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks58.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks58.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks59.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks59.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks59.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks5.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks5.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks5.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks60.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks60.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks60.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks61.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks61.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks61.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks62.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks62.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks62.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks63.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks63.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks63.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks64.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks64.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks64.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks65.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks65.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks65.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks66.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks66.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks66.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks67.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks67.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks67.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks68.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks68.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks68.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks69.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks69.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks69.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks6.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks6.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks6.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks70.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks70.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks70.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks71.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks71.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks71.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks72.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks72.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks72.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks73.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks73.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks73.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks74.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks74.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks74.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks75.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks75.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks75.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks76.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks76.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks76.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks77.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks77.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks77.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks78.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks78.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks78.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks79.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks79.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks79.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks7.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks7.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/soft_filtered_transcripts.min60aa_standardCode_ORF.chunks7.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks118.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks118.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks118.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks119.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks119.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks119.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks11.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks11.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks11.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks120.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks120.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks120.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks121.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks121.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks121.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks122.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks122.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks122.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks123.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks123.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks123.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks124.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks124.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks124.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks125.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks125.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks125.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks126.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks126.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks126.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks127.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks127.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks127.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks128.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks128.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks128.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks129.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks129.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks129.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks12.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks12.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks12.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks130.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks130.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks130.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks131.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks131.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks131.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks132.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks132.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks132.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks133.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks133.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks133.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks134.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks134.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks134.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks135.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks135.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks135.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks136.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks136.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks136.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks137.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks137.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks137.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks138.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks138.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks138.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks139.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks139.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks139.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks13.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks13.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks13.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks140.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks140.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks140.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks141.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks141.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks141.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks142.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks142.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks142.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks143.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks143.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks143.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks144.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks144.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks144.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks145.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks145.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks145.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks146.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks146.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks146.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks147.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks147.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks147.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks148.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks148.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks148.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks149.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks149.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks149.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks14.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks14.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks14.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks150.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks150.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks150.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks151.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks151.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks151.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks152.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks152.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks152.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks153.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks153.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks153.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks154.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks154.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks154.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks155.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks155.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks155.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks156.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks156.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks156.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks157.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks157.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks157.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks158.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks158.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks158.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks169.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks169.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks169.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks171.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks171.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks171.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks176.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks176.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks176.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks177.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks177.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks177.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks178.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks178.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks178.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks179.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks179.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks179.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks180.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks180.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks180.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks181.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks181.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks181.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks182.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks182.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks182.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks183.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks183.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks183.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks184.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks184.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks184.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks189.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks189.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks189.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks200.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks200.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks200.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks20.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks20.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks20.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks210.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks210.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks210.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks211.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks211.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks211.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks29.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks29.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks29.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks2.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks2.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks2.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks30.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks30.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks30.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks31.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks31.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks31.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks32.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks32.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks32.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks33.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks33.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks33.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks34.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks34.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks34.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks35.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks35.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks35.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks36.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks36.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks36.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks37.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks37.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks37.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks38.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks38.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks38.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks39.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks39.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks39.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks3.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks3.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks3.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks40.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks40.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks40.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks41.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks41.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks41.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks42.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks42.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks42.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks43.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks43.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks43.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks44.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks44.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks44.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks45.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks45.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks45.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks46.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks46.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks46.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks47.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks47.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks47.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks48.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks48.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks48.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks49.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks49.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks49.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks4.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks4.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks4.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks50.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks50.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks50.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks51.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks51.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks51.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks52.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks52.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks52.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks53.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks53.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks53.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks54.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks54.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks54.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks55.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks55.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks55.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks56.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks56.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks56.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks57.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks57.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks57.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks58.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks58.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks58.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks59.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks59.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks59.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks5.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks5.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks5.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks60.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks60.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks60.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks61.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks61.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks61.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks62.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks62.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks62.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks63.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks63.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks63.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks64.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks64.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks64.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks65.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks65.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks65.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks66.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks66.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks66.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks67.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks67.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks67.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks68.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks68.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks68.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks69.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks69.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks69.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks6.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks6.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks6.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks70.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks70.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks70.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks71.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks71.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks71.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks81.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks81.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks81.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks84.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks84.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks84.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks89.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks89.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks89.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks8.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks8.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks8.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks90.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks90.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks90.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks91.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks91.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks91.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks92.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks92.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks92.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks93.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks93.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks93.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks94.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks94.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks94.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks95.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks95.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks95.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks96.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks96.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks96.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks97.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks97.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks97.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks98.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks98.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks98.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks99.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks99.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks99.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks9.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks9.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.6frame.chunks9.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks100.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks100.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks100.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks101.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks101.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks101.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks102.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks102.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks102.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks103.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks103.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks103.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks104.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks104.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks104.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks105.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks105.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks105.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks106.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks106.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks106.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks107.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks107.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks107.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks108.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks108.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks108.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks109.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks109.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks109.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks10.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks10.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks10.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks110.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks110.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks110.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks111.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks111.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks111.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks112.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks112.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks112.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks113.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks113.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks113.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks114.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks114.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks114.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks11.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks11.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks11.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks12.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks12.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks12.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks13.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks13.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks13.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks14.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks14.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks14.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks15.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks15.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks15.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks16.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks16.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks16.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks17.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks17.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks17.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks18.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks18.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks18.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks19.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks19.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks19.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks1.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks1.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks1.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks20.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks20.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks20.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks21.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks21.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks21.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks22.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks22.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks22.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks23.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks23.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks23.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks24.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks24.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks24.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks25.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks25.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks25.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks26.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks26.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks26.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks27.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks27.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks27.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks28.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks28.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks28.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks29.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks29.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks29.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks2.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks2.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks2.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks30.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks30.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks30.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks31.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks31.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks31.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks32.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks32.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks32.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks33.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks33.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks33.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks34.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks34.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks34.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks35.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks35.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks35.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks36.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks36.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks36.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks37.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks37.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks37.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks38.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks38.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks38.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks39.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks39.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks39.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks3.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks3.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks3.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks40.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks40.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks40.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks41.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks41.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks41.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks42.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks42.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks42.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks43.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks43.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks43.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks44.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks44.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks44.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks45.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks45.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks45.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks46.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks46.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks46.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks47.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks47.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks47.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks48.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks48.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks48.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks49.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks49.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks49.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks4.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks4.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks4.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks50.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks50.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks50.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks51.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks51.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks51.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks52.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks52.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks52.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks53.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks53.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks53.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks54.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks54.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks54.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks55.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks55.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks55.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks56.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks56.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks56.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks57.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks57.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks57.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks58.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks58.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks58.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks59.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks59.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks59.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks5.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks5.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks5.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks60.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks60.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks60.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks61.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks61.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks61.fa
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/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks63.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks63.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks63.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks64.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks64.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks64.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks65.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks65.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks65.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks66.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks66.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks66.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks67.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks67.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks67.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks68.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks68.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks68.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks69.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks69.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks69.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks6.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks6.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks6.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks70.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks70.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks70.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks71.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks71.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks71.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks72.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks72.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks72.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks73.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks73.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks73.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks74.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks74.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks74.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks75.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks75.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks75.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks76.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks76.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks76.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks77.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks77.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks77.fa
/oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan --cpu 20 -o SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks78.PFam32-A --tblout SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks78.PFam32-A.tblout /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm SPAdes-3.13-RNA-L1184-Euplotes_sym_SMART-seq/transcripts.min60aa_standardCode_ORF.chunks78.fa
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