#	C methylated in CHG context:	C methylated in CHH context:	C methylated in CpG context:	C methylated in unknown context (CN or CHN):	CT/GA/CT:	CT/GA/GA:	GA/CT/CT:	GA/CT/GA:	Mapping efficiency:	Number of alignments to (merely theoretical) complementary strands being rejected in total:	Number of paired-end alignments with a unique best hit:	Sequence pairs analysed in total:	Sequence pairs did not map uniquely:	Sequence pairs which were discarded because genomic sequence could not be extracted:	Sequence pairs with no alignments under any condition:	Total methylated C's in CHG context:	Total methylated C's in CHH context:	Total methylated C's in CpG context:	Total methylated C's in Unknown context:	Total number of C's analysed:	Total unmethylated C's in CHG context:	Total unmethylated C's in CHH context:	Total unmethylated C's in CpG context:	Total unmethylated C's in Unknown context:
L577-Haloferax_volcani_stationary_EM-seq	32.6%	29.1%	26.9%	26.1%	1660652	1662988	0	0	74.2%	0	3323661	4481470	68588	21	1089221	9625254	14672701	20040182	723	154414171	19870545	35825530	54379959	2045
L577-Haloferax_volcani_stationary_EM-seq.Lambda_phage	18.0%	14.6%	15.0%	nan	45	49	0	0	0.0%	0	94	4481470	0	0	4481376	105	168	96	0	2377	478	984	546	0
L577-Haloferax_volcani_stationary_EM-seq.pUC19	21.6%	21.8%	16.5%	nan	8	13	0	0	0.0%	0	21	4481470	0	0	4481449	43	82	29	0	752	156	295	147	0
L585-34C_d0-1-EM-seq	1.6%	1.2%	65.6%	2.8%	1100615	1097072	0	0	48.8%	0	2197964	4506640	193819	277	2114857	188164	559113	5306686	607	67110735	11353499	46914677	2788596	21191
L585-34C_d0-1-EM-seq.Lambda_phage	0.7%	0.6%	0.6%	0.0%	840	914	0	0	0.2%	0	1754	881570	0	0	879816	102	182	90	0	60490	15422	30075	14619	3
L585-34C_d0-1-EM-seq.pUC19	1.1%	0.5%	92.5%	0.0%	194	233	0	0	0.0%	0	427	4506640	0	0	4506213	35	42	3141	0	14448	3198	7779	253	3
L586-34C_d0-2-EM-seq	1.5%	1.0%	66.4%	3.4%	762202	761096	0	0	50.3%	0	1523514	3030163	139145	216	1367504	120372	333674	3833573	495	46521648	8046236	32252208	1935585	14107
L586-34C_d0-2-EM-seq.Lambda_phage	0.4%	0.4%	0.4%	0.0%	1949	2043	0	0	0.3%	0	3992	1375055	0	0	1371063	154	266	145	0	138872	36405	66771	35131	11
L586-34C_d0-2-EM-seq.pUC19	1.1%	0.7%	90.3%	0.0%	219	248	0	0	0.0%	0	467	3030163	0	0	3029696	40	61	3486	0	16343	3615	8767	374	1
L587-34C_d0-3-EM-seq	1.6%	1.2%	67.6%	3.5%	588882	589895	0	0	43.4%	0	1178928	2719139	109553	151	1430658	104618	291923	3061305	360	35834198	6254015	24655086	1467251	9882
L587-34C_d0-3-EM-seq.Lambda_phage	0.5%	0.5%	0.4%	0.0%	2211	2294	0	0	0.3%	0	4505	1637148	0	0	1632643	222	387	178	0	155582	40786	74587	39422	8
L587-34C_d0-3-EM-seq.pUC19	1.2%	0.8%	90.4%	0.0%	178	190	0	0	0.0%	0	369	2719139	0	1	2718770	35	55	2827	0	12850	2880	6754	299	1
L588-34C_d2-1-EM-seq	1.6%	1.3%	64.5%	2.9%	238161	238297	0	0	48.1%	0	476530	991576	48334	72	466712	41636	129570	1154639	135	14599007	2495141	10141809	636212	4595
L588-34C_d2-1-EM-seq.Lambda_phage	0.8%	0.7%	0.8%	0.0%	1064	1041	0	0	0.2%	0	2105	991576	0	0	989471	156	248	145	0	72072	18459	35262	17802	3
L588-34C_d2-1-EM-seq.pUC19	1.5%	1.2%	91.3%	nan	50	41	0	0	0.0%	0	91	991576	0	0	991485	11	20	669	0	3162	723	1675	64	0
L589-34C_d2-2-EM-seq	1.4%	1.0%	63.4%	3.0%	1113275	1109523	0	0	49.0%	0	2223143	4534387	203887	345	2107357	166838	477420	5283313	671	68195377	11726262	47496418	3045126	21771
L589-34C_d2-2-EM-seq.Lambda_phage	0.6%	0.3%	0.5%	0.0%	549	577	0	0	0.3%	0	1126	426649	0	0	425523	59	58	45	0	38688	9819	19147	9560	3
L589-34C_d2-2-EM-seq.pUC19	1.0%	0.6%	83.6%	0.0%	284	264	0	0	0.0%	0	548	4534387	0	0	4533839	45	65	3757	0	19135	4262	10269	737	2
L590-34C_d2-3-EM-seq	2.2%	1.8%	67.2%	3.8%	649167	645090	0	0	48.0%	0	1294460	2699127	131687	203	1272980	150076	502187	3201825	480	39250072	6629019	27201792	1565173	12194
L590-34C_d2-3-EM-seq.Lambda_phage	1.5%	1.5%	1.4%	3.7%	6760	7284	0	0	0.5%	0	14046	2699127	0	2	2685081	1809	3548	1606	1	481586	121651	235888	117084	26
L590-34C_d2-3-EM-seq.pUC19	2.2%	2.1%	94.8%	nan	342	348	0	0	0.0%	0	690	2699127	0	0	2698437	117	269	5300	0	23759	5284	12498	291	0
L591-34C_d5-1-EM-seq	1.7%	1.3%	63.6%	2.9%	455540	452366	0	0	50.3%	0	908061	1805543	91947	155	805535	80752	259299	2130036	272	27962332	4713083	19558054	1221108	9012
L591-34C_d5-1-EM-seq.Lambda_phage	1.0%	0.9%	1.1%	0.0%	1164	1231	0	0	0.1%	0	2395	1805543	0	0	1803148	214	369	217	0	83080	21048	40828	20404	8
L591-34C_d5-1-EM-seq.pUC19	3.1%	3.0%	90.3%	0.0%	51	56	0	0	0.0%	0	107	1805543	0	0	1805436	27	62	728	0	3729	857	1977	78	1
L592-34C_d5-2-EM-seq	2.4%	2.0%	63.1%	3.6%	781302	778957	0	0	49.9%	0	1560460	3130069	153423	201	1416186	195417	657788	3700803	557	47776174	8116708	32940072	2165386	14864
L592-34C_d5-2-EM-seq.Lambda_phage	1.3%	1.1%	1.3%	0.0%	1833	2018	0	0	0.1%	0	3851	3130069	0	0	3126218	460	747	414	0	133140	33735	65167	32617	16
L592-34C_d5-2-EM-seq.pUC19	4.4%	4.0%	83.9%	nan	98	98	0	0	0.0%	0	196	3130069	0	0	3129873	67	145	1242	0	6633	1463	3477	239	0
L593-34C_d5-3-EM-seq	2.1%	1.7%	67.0%	3.7%	374567	373866	0	0	49.9%	0	748548	1501349	74552	115	678249	82020	269836	1881983	272	22869355	3894735	15811969	928812	7033
L593-34C_d5-3-EM-seq.Lambda_phage	1.5%	1.4%	1.3%	0.0%	1198	1355	0	0	0.2%	0	2553	1501349	0	0	1498796	346	596	281	0	89039	22768	42930	22118	4
L593-34C_d5-3-EM-seq.pUC19	2.8%	2.3%	91.8%	nan	58	66	0	0	0.0%	0	125	1501349	0	1	1501224	28	53	941	0	4294	980	2208	84	0
L616-34C_d0-1_on_bead_PCR	2.5%	9.2%	68.3%	15.5%	13857	12061	0	0	1.6%	0	25922	1590646	5492	3912	1559232	2478	35996	48440	32	559851	96586	353850	22501	175
L616-34C_d0-1_on_bead_PCR.Lambda_phage	0.9%	0.4%	0.5%	0.0%	69	59	0	0	0.0%	0	128	3035970	0	0	3035842	11	7	6	0	4279	1162	1901	1192	1
L616-34C_d0-1_on_bead_PCR.pUC19	35.8%	32.1%	95.7%	nan	7	9	0	0	0.0%	0	16	3035970	0	0	3035954	54	93	133	0	580	97	197	6	0
L617-34C_d0-2_on_bead_PCR	2.4%	7.9%	69.5%	13.6%	29654	22591	0	0	2.3%	0	52251	2247895	10852	7162	2184792	4718	63143	99098	53	1145791	195502	739765	43565	336
L617-34C_d0-2_on_bead_PCR.Lambda_phage	0.6%	0.7%	0.8%	nan	75	79	0	0	0.0%	0	154	3275575	0	0	3275421	8	16	11	0	4927	1272	2288	1332	0
L617-34C_d0-2_on_bead_PCR.pUC19	27.9%	29.7%	93.3%	nan	8	10	0	0	0.0%	0	18	3275575	0	0	3275557	31	83	125	0	524	80	196	9	0
L618-34C_d0-3_on_bead_PCR	2.5%	10.0%	68.5%	15.1%	84016	95178	0	0	1.8%	0	179214	9920038	43261	20	9697563	18835	320732	371228	250	4503996	749932	2872366	170903	1402
L618-34C_d0-3_on_bead_PCR.Lambda_phage	0.0%	0.0%	0.0%	nan	14	8	0	0	0.0%	0	22	10352572	0	0	10352550	0	0	0	0	767	223	341	203	0
L618-34C_d0-3_on_bead_PCR.pUC19	35.6%	40.9%	92.7%	100.0%	18	14	0	0	0.0%	0	32	13205699	0	0	13205667	79	212	191	1	946	143	306	15	0
L619-34C_d2-1_on_bead_PCR	2.6%	9.4%	72.9%	17.9%	123556	122592	0	0	1.8%	0	246176	13801774	52182	28	13503416	27306	410673	559372	406	6196433	1032264	3959299	207519	1867
L619-34C_d2-1_on_bead_PCR.Lambda_phage	0.5%	0.8%	0.8%	0.0%	87	81	0	0	0.0%	0	168	13129618	0	0	13129450	7	22	11	0	5314	1338	2589	1347	2
L619-34C_d2-1_on_bead_PCR.pUC19	48.2%	36.3%	91.2%	nan	13	15	0	0	0.0%	0	28	13801774	0	0	13801746	79	164	135	0	764	85	288	13	0
L620-34C_d2-2_on_bead_PCR	2.0%	5.9%	72.2%	13.7%	328444	329734	0	0	2.7%	0	658221	24768014	104552	43	24005241	63713	709680	1621098	894	17391587	3069770	11301951	625375	5645
L620-34C_d2-2_on_bead_PCR.Lambda_phage	0.5%	0.9%	0.6%	22.2%	685	667	0	0	0.0%	0	1352	24768014	0	0	24766662	62	174	69	2	44064	11976	19889	11894	7
L620-34C_d2-2_on_bead_PCR.pUC19	38.1%	40.5%	94.0%	nan	42	31	0	0	0.0%	0	73	24768014	0	0	24767941	201	511	489	0	2310	327	751	31	0
L621-34C_d2-3_on_bead_PCR	1.9%	5.5%	69.9%	12.0%	35063	35406	0	0	4.3%	0	70476	1620823	12367	7	1537980	6238	70484	162874	75	1844033	329875	1204369	70193	551
L621-34C_d2-3_on_bead_PCR.Lambda_phage	0.5%	0.6%	0.6%	0.0%	668	623	0	0	0.1%	0	1291	1620823	0	0	1619532	61	117	76	0	43748	12044	19482	11968	17
L621-34C_d2-3_on_bead_PCR.pUC19	27.8%	32.5%	98.9%	nan	11	12	0	0	0.0%	0	23	1620823	0	0	1620800	45	149	172	0	795	117	310	2	0
L622-34C_d5-1_on_bead_PCR	2.2%	8.1%	73.9%	15.4%	146314	145964	0	0	2.4%	0	292305	12224712	58709	27	11873698	28934	422833	692868	435	7440472	1268150	4783365	244322	2394
L622-34C_d5-1_on_bead_PCR.Lambda_phage	0.8%	2.3%	0.1%	0.0%	86	66	0	0	0.0%	0	152	10255186	0	0	10255034	10	46	1	0	4559	1265	1997	1240	1
L622-34C_d5-1_on_bead_PCR.pUC19	41.0%	45.5%	100.0%	nan	11	12	0	0	0.0%	0	23	10696622	0	0	10696599	75	201	165	0	790	108	241	0	0
L623-34C_d5-2_on_bead_PCR	2.1%	7.8%	74.1%	13.6%	63227	63858	0	0	1.8%	0	127097	6902889	22320	12	6753472	12862	181712	325036	183	3369077	588696	2146897	113874	1162
L623-34C_d5-2_on_bead_PCR.Lambda_phage	0.0%	1.0%	0.0%	nan	16	17	0	0	0.0%	0	33	1193059	0	0	1193026	0	5	0	0	1124	309	513	297	0
L623-34C_d5-2_on_bead_PCR.pUC19	40.9%	54.4%	99.0%	nan	5	7	0	0	0.0%	0	12	6902889	0	0	6902877	38	112	96	0	396	55	94	1	0
L624-34C_d5-3_on_bead_PCR	1.9%	6.4%	73.0%	14.8%	304314	305884	0	0	1.7%	0	610240	35186292	91056	42	34484996	54851	740717	1536276	1105	16689880	2904323	10884985	568728	6355
L624-34C_d5-3_on_bead_PCR.Lambda_phage	0.6%	0.7%	0.7%	0.0%	785	814	0	0	0.0%	0	1599	35186292	0	0	35184693	91	178	104	0	54166	14311	25099	14383	21
L624-34C_d5-3_on_bead_PCR.pUC19	38.5%	39.3%	97.6%	nan	33	35	0	0	0.0%	0	68	35186292	0	0	35186224	200	442	478	0	2133	319	682	12	0
L625-stationary_2019_03_on_bead_PCR	0.5%	0.5%	0.7%	5.9%	23767	23618	0	0	1.5%	0	47385	3066799	2589	0	3016825	1745	3864	6774	19	2034859	385798	730194	906484	301
L625-stationary_2019_03_on_bead_PCR.Lambda_phage	0.7%	0.6%	0.2%	nan	69	75	0	0	0.0%	0	144	3066799	0	0	3066655	10	15	3	0	5116	1363	2404	1321	0
L625-stationary_2019_03_on_bead_PCR.pUC19	31.5%	35.9%	85.7%	nan	4	4	0	0	0.0%	0	8	3066799	0	0	3066791	23	55	60	0	296	50	98	10	0
L626-42C_2019_07_on_bead_PCR	0.8%	1.0%	1.1%	7.8%	235433	234959	0	0	2.9%	0	470395	16501830	28298	3	16003137	32193	73347	101502	290	20064622	3798141	7143203	8916236	3424
L626-42C_2019_07_on_bead_PCR.Lambda_phage	0.6%	0.4%	0.4%	0.0%	618	577	0	0	0.0%	0	1195	16501830	0	0	16500635	65	67	48	0	41405	11353	18557	11315	4
L626-42C_2019_07_on_bead_PCR.pUC19	36.2%	33.5%	93.4%	nan	21	9	0	0	0.0%	0	30	16501830	0	0	16501800	96	157	212	0	961	169	312	15	0
L627-stationary_2019_07_on_bead_PCR	0.5%	0.6%	0.8%	7.3%	54255	53636	0	0	1.6%	0	107891	6840111	6464	0	6725756	4607	10791	16468	57	4600437	876152	1665374	2027045	721
L627-stationary_2019_07_on_bead_PCR.Lambda_phage	1.0%	0.8%	0.3%	nan	16	15	0	0	0.0%	0	31	729967	0	0	729936	3	4	1	0	1076	302	471	295	0
L627-stationary_2019_07_on_bead_PCR.pUC19	50.0%	50.0%	90.9%	nan	3	5	0	0	0.0%	0	8	6840111	0	0	6840103	32	71	50	0	261	32	71	5	0