#	Sequenced Read Pairs	Normal Paired	Chimeric Paired	Chimeric Ambiguous	Unmapped	Ligation Motif Present	Alignable (Normal+Chimeric Paired)	Unique Reads	PCR Duplicates	Optical Duplicates	Library Complexity Estimate	Intra-fragment Reads	Hi-C Contacts	Hi-C Contacts Ligation Motif Present	Hi-C Contacts 3p Bias (Long Range)	Hi-C Contacts Pair Type (L-I-O-R)	Inter-chromosomal	Intra-chromosomal	Short Range (<20Kb)	Long Range (>20Kb)
L2869+L2870+L2873+L2874_HEPES	205,873,661	111,633,275 (54.22%)	81,732,687 (39.70%)	11,852,224 (5.76%)	655,475 (0.32%)	0  (0.00% / 0.00%)	193,365,962 (93.92%)	93,178,175 (45.26%)	93,496,820 (45.41%)	6,690,967 (3.25%)	116,802,348	0 (0.00% / 0.00%)	92,402,358 (44.88% / 99.17%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	816,935  (0.40% / 0.88%)	91,585,423  (44.49% / 98.29%)	12,386,226  (6.02% / 13.29%)	79,194,058  (38.47% / 84.99%)
L2869-HEPES_Hi-C	38,233,031	24,926,311 (65.20%)	11,650,392 (30.47%)	1,536,342 (4.02%)	119,986 (0.31%)	0  (0.00% / 0.00%)	36,576,703 (95.67%)	17,642,771 (46.15%)	17,628,148 (46.11%)	1,305,784 (3.42%)	22,147,982	0 (0.00% / 0.00%)	17,454,841 (45.65% / 98.93%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	172,129  (0.45% / 0.98%)	17,282,712  (45.20% / 97.96%)	4,659,383  (12.19% / 26.41%)	12,622,331  (33.01% / 71.54%)
L2870-HEPES_Hi-C	54,690,701	34,372,861 (62.85%)	18,289,543 (33.44%)	1,838,971 (3.36%)	189,326 (0.35%)	0  (0.00% / 0.00%)	52,662,404 (96.29%)	22,089,374 (40.39%)	28,798,529 (52.66%)	1,774,501 (3.24%)	25,593,996	0 (0.00% / 0.00%)	21,844,561 (39.94% / 98.89%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	239,194  (0.44% / 1.08%)	21,605,367  (39.50% / 97.81%)	5,601,091  (10.24% / 25.36%)	16,003,048  (29.26% / 72.45%)
L2871+L2872+L2875+L2876_LB	188,385,599	92,555,198 (49.13%)	88,328,209 (46.89%)	6,824,039 (3.62%)	678,153 (0.36%)	0  (0.00% / 0.00%)	180,883,407 (96.02%)	80,949,305 (42.97%)	94,985,539 (50.42%)	4,948,563 (2.63%)	96,565,231	0 (0.00% / 0.00%)	80,059,341 (42.50% / 98.90%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	1,270,291  (0.67% / 1.57%)	78,789,050  (41.82% / 97.33%)	15,506,945  (8.23% / 19.16%)	63,271,360  (33.59% / 78.16%)
L2871-LB_Hi-C	34,299,529	15,442,903 (45.02%)	17,636,320 (51.42%)	1,096,097 (3.20%)	124,209 (0.36%)	0  (0.00% / 0.00%)	33,079,223 (96.44%)	19,511,939 (56.89%)	12,653,747 (36.89%)	913,537 (2.66%)	29,255,049	0 (0.00% / 0.00%)	19,303,779 (56.28% / 98.93%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	305,566  (0.89% / 1.57%)	18,998,213  (55.39% / 97.37%)	5,151,227  (15.02% / 26.40%)	13,844,003  (40.36% / 70.95%)
L2872-LB_Hi-C	38,876,443	17,396,497 (44.75%)	19,840,851 (51.04%)	1,529,417 (3.93%)	109,678 (0.28%)	0  (0.00% / 0.00%)	37,237,348 (95.78%)	24,438,438 (62.86%)	11,541,518 (29.69%)	1,257,392 (3.23%)	43,307,520	0 (0.00% / 0.00%)	24,185,525 (62.21% / 98.97%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	453,251  (1.17% / 1.85%)	23,732,274  (61.05% / 97.11%)	5,399,570  (13.89% / 22.09%)	18,328,315  (47.15% / 75.00%)
L2873-HEPES_Hi-C	47,694,626	22,833,831 (47.88%)	21,280,373 (44.62%)	3,421,907 (7.17%)	158,515 (0.33%)	0  (0.00% / 0.00%)	44,114,204 (92.49%)	26,426,829 (55.41%)	16,026,395 (33.60%)	1,660,980 (3.48%)	40,944,649	0 (0.00% / 0.00%)	26,209,044 (54.95% / 99.18%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	265,906  (0.56% / 1.01%)	25,943,138  (54.39% / 98.17%)	4,542,057  (9.52% / 17.19%)	21,399,446  (44.87% / 80.98%)
L2874-HEPES_Hi-C	65,255,303	29,500,337 (45.21%)	30,512,661 (46.76%)	5,054,657 (7.75%)	187,648 (0.29%)	0  (0.00% / 0.00%)	60,012,998 (91.97%)	35,756,968 (54.80%)	21,896,426 (33.56%)	2,359,604 (3.62%)	55,132,780	0 (0.00% / 0.00%)	35,467,226 (54.35% / 99.19%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	363,097  (0.56% / 1.02%)	35,104,129  (53.80% / 98.17%)	5,346,435  (8.19% / 14.95%)	29,755,600  (45.60% / 83.22%)
L2875-LB_Hi-C	44,698,509	33,956,085 (75.97%)	10,118,145 (22.64%)	446,334 (1.00%)	177,945 (0.40%)	0  (0.00% / 0.00%)	44,074,230 (98.60%)	13,438,170 (30.06%)	29,706,108 (66.46%)	929,952 (2.08%)	14,099,218	0 (0.00% / 0.00%)	13,215,418 (29.57% / 98.34%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	347,699  (0.78% / 2.59%)	12,867,719  (28.79% / 95.75%)	6,549,941  (14.65% / 48.74%)	6,316,782  (14.13% / 47.01%)
L2876-LB_Hi-C	70,511,118	25,759,710 (36.53%)	40,732,941 (57.77%)	3,752,146 (5.32%)	266,321 (0.38%)	0  (0.00% / 0.00%)	66,492,651 (94.30%)	32,293,657 (45.80%)	32,015,401 (45.40%)	2,183,593 (3.10%)	40,649,275	0 (0.00% / 0.00%)	31,906,157 (45.25% / 98.80%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	528,718  (0.75% / 1.64%)	31,377,439  (44.50% / 97.16%)	6,510,801  (9.23% / 20.16%)	24,863,088  (35.26% / 76.99%)
reoriented-rerun-L2869-HEPES_Hi-C	38,233,031	24,979,297 (65.33%)	6,699,014 (17.52%)	3,772,713 (9.87%)	2,782,007 (7.28%)	0  (0.00% / 0.00%)	31,678,311 (82.86%)	15,360,097 (40.17%)	14,997,524 (39.23%)	1,320,690 (3.45%)	19,436,945	0 (0.00% / 0.00%)	15,307,819 (40.04% / 99.66%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	0  (0.00% / 0.00%)	15,307,819  (40.04% / 99.66%)	4,704,068  (12.30% / 30.63%)	10,603,062  (27.73% / 69.03%)
reoriented-rerun-L2870-HEPES_Hi-C	54,690,701	34,374,566 (62.85%)	8,705,989 (15.92%)	4,325,927 (7.91%)	7,284,219 (13.32%)	0  (0.00% / 0.00%)	43,080,555 (78.77%)	19,485,687 (35.63%)	21,788,643 (39.84%)	1,806,225 (3.30%)	23,583,170	0 (0.00% / 0.00%)	19,419,952 (35.51% / 99.66%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	0  (0.00% / 0.00%)	19,419,952  (35.51% / 99.66%)	5,653,852  (10.34% / 29.02%)	13,765,255  (25.17% / 70.64%)
reoriented-rerun-L2871-LB_Hi-C	34,299,529	15,668,554 (45.68%)	7,559,069 (22.04%)	5,986,862 (17.45%)	5,085,044 (14.83%)	0  (0.00% / 0.00%)	23,227,623 (67.72%)	14,631,840 (42.66%)	7,698,850 (22.45%)	896,933 (2.62%)	24,411,018	0 (0.00% / 0.00%)	14,584,542 (42.52% / 99.68%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	0  (0.00% / 0.00%)	14,584,542  (42.52% / 99.68%)	5,045,065  (14.71% / 34.48%)	9,538,063  (27.81% / 65.19%)
reoriented-rerun-L2872-LB_Hi-C	38,876,443	18,025,156 (46.37%)	9,549,341 (24.56%)	9,127,486 (23.48%)	2,174,460 (5.59%)	0  (0.00% / 0.00%)	27,574,497 (70.93%)	16,968,728 (43.65%)	9,395,727 (24.17%)	1,210,042 (3.11%)	27,547,843	0 (0.00% / 0.00%)	16,911,515 (43.50% / 99.66%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	0  (0.00% / 0.00%)	16,911,515  (43.50% / 99.66%)	5,196,690  (13.37% / 30.63%)	11,712,900  (30.13% / 69.03%)
reoriented-rerun-L2873-HEPES_Hi-C	47,694,626	23,197,234 (48.64%)	12,271,126 (25.73%)	9,124,130 (19.13%)	3,102,136 (6.50%)	0  (0.00% / 0.00%)	35,468,360 (74.37%)	20,807,174 (43.63%)	13,028,428 (27.32%)	1,632,758 (3.42%)	31,731,812	0 (0.00% / 0.00%)	20,736,248 (43.48% / 99.66%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	0  (0.00% / 0.00%)	20,736,248  (43.48% / 99.66%)	4,568,969  (9.58% / 21.96%)	16,166,179  (33.90% / 77.70%)
reoriented-rerun-L2874-HEPES_Hi-C	65,255,303	30,085,941 (46.10%)	15,838,752 (24.27%)	15,531,733 (23.80%)	3,798,877 (5.82%)	0  (0.00% / 0.00%)	45,924,693 (70.38%)	25,550,784 (39.16%)	18,106,631 (27.75%)	2,267,278 (3.47%)	36,761,356	0 (0.00% / 0.00%)	25,464,325 (39.02% / 99.66%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	0  (0.00% / 0.00%)	25,464,325  (39.02% / 99.66%)	5,334,242  (8.17% / 20.88%)	20,128,796  (30.85% / 78.78%)
reoriented-rerun-L2875-LB_Hi-C	44,698,509	34,222,978 (76.56%)	3,618,753 (8.10%)	1,497,537 (3.35%)	5,359,241 (11.99%)	0  (0.00% / 0.00%)	37,841,731 (84.66%)	12,120,402 (27.12%)	24,769,088 (55.41%)	952,241 (2.13%)	12,847,972	0 (0.00% / 0.00%)	12,088,908 (27.05% / 99.74%)	0  (0.00% / 0.00%)	0% - 0%	25% - 25% - 25% - 25%	0  (0.00% / 0.00%)	12,088,908  (27.05% / 99.74%)	6,738,514  (15.08% / 55.60%)	5,349,653  (11.97% / 44.14%)
reoriented-rerun-L2876-LB_Hi-C	70,511,118	25,676,348 (36.41%)	13,748,531 (19.50%)	10,955,765 (15.54%)	20,130,474 (28.55%)	0  (0.00% / 0.00%)	39,424,879 (55.91%)	16,245,267 (23.04%)	8,797,012 (12.48%)	1,385,299 (1.96%)	26,686,828	0 (0.00% / 0.00%)	16,166,696 (22.93% / 99.52%)	0  (0.00% / 0.00%)	0% - 0%	0% - 37% - 22% - 40%	0  (0.00% / 0.00%)	16,166,696  (22.93% / 99.52%)	4,712,097  (6.68% / 29.01%)	11,453,277  (16.24% / 70.50%)