Index of /kundaje/marinovg/oak/papers/2024_Bdellovibrio/2023-07-11-assembly

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]16S-phylogeny/2023-07-19 03:27 -  
[TXT]ATACTSSscore.txt2023-07-28 09:11 5.6K 
[ ]Bd0005_histone.fa2023-07-22 02:15 82  
[DIR]Bdellovibrio_histone_Alphafold_2_on___Visualization/2024-02-16 19:01 -  
[DIR]DESeq2/2023-07-28 13:40 -  
[ ]RPM-counts.tar.gz2023-07-28 10:11 11M 
[ ]SAMstats-files.tar.gz2023-07-17 22:13 2.3K 
[ ]SAMstats.dedup.table2023-07-17 22:06 2.3K 
[ ]SAMstats.files2023-07-17 22:06 9.9K 
[ ]SAMstats.table2023-07-17 22:06 6.1K 
[ ]SAMstats.unique.table2023-07-17 22:06 3.8K 
[ ]TSS-250bp.RPM.L2845-Bdellovibrio_bacteriovorus_ICPB_3264_NT_10_2.name2023-07-28 09:32 686K 
[ ]TSS-250bp.RPM.files2023-07-24 17:50 2.2K 
[ ]TSS-250bp.RPM.table2023-07-28 10:11 1.6M 
[ ]TSS-250bp.counts.files2023-07-24 17:50 2.3K 
[ ]TSS-250bp.counts.table2023-07-28 10:11 854K 
[ ]TSS_genes.RPM.files2023-07-24 19:37 4.9K 
[ ]TSS_genes.RPM.for_correlation.pearson2023-07-28 13:47 12K 
[ ]TSS_genes.RPM.for_correlation.spearman2023-07-28 13:47 12K 
[ ]TSS_genes.RPM.for_correlation.table2023-07-28 13:46 1.3M 
[ ]TSS_genes.RPM.pearson2023-07-28 13:40 56K 
[ ]TSS_genes.RPM.spearman2023-07-28 13:40 56K 
[ ]TSS_genes.RPM.table2023-07-28 10:11 3.0M 
[DIR]V-plots/2023-07-28 10:38 -  
[ ]bands.conf2023-07-17 23:59 138  
[DIR]blast/2023-07-24 19:36 -  
[ ]chr.L2844-Bdellovibrio_bacteriovorus_ICPB_3264_NT_10_1.conf2023-07-18 01:32 1.4K 
[IMG]chr.L2844-Bdellovibrio_bacteriovorus_ICPB_3264_NT_10_1.png2023-07-18 02:32 419K 
[ ]chr.L2865-HEPES_KAS.conf2023-07-18 00:18 1.4K 
[IMG]chr.L2865-HEPES_KAS.png2023-07-18 01:29 210K 
[ ]chr.genome.conf2023-09-30 15:50 2.6K 
[IMG]chr.genome.png2023-07-18 09:47 605K 
[ ]chr.karyotype2023-07-18 00:09 61  
[ ]chr.protein.tile2023-07-18 08:58 360K 
[ ]chr.protein.tile.minus2023-07-18 09:31 263K 
[ ]chr.protein.tile.plus2023-07-18 09:31 262K 
[ ]chr.rRNA.bed2023-07-18 10:05 397  
[ ]chr.rRNA.fa2023-07-18 10:06 9.0K 
[ ]chr.rRNA.tile2023-07-18 09:42 116  
[ ]chr.tRNA.tile2023-07-18 09:02 2.3K 
[ ]cumulativeGeneProfiles.KAS-ATAC-200bp.table2023-07-18 02:48 476K 
[ ]cumulativeGeneProfiles.KAS-ATAC.files2023-07-18 02:41 4.0K 
[ ]genes.RPM.files2023-07-24 17:51 2.1K 
[ ]genes.RPM.table2023-07-28 10:11 1.6M 
[ ]genes.counts.files2023-07-24 17:51 2.2K 
[ ]genes.counts.table2023-07-28 10:11 868K 
[ ]histones.faa2023-07-22 21:31 5.7K 
[ ]histones.muscle.block.fasta2023-07-22 20:50 10K 
[ ]histones.muscle.fasta2023-07-22 20:46 11K 
[ ]histones_short_only.faa2023-07-22 20:46 3.1K 
[ ]histones_short_only.muscle.block.fasta2023-07-22 20:50 4.1K 
[ ]histones_short_only.muscle.fasta2023-07-22 20:46 4.3K 
[ ]histones_short_only_dimer.faa2023-07-22 22:34 3.3K 
[ ]histones_short_only_dimer.muscle.block.edited.fasta2024-03-01 13:28 3.8K 
[ ]histones_short_only_dimer.muscle.block.edited2.eps2024-08-30 16:27 321K 
[ ]histones_short_only_dimer.muscle.block.edited2.fasta2024-08-30 16:26 3.3K 
[ ]histones_short_only_dimer.muscle.block.fasta2023-07-22 22:34 5.5K 
[ ]histones_short_only_dimer.muscle.fasta2023-07-22 22:34 5.8K 
[ ]ideogram.conf2023-07-17 23:59 532  
[ ]ideogram.label.conf2023-07-18 09:35 169  
[ ]ideogram.position.conf2023-07-17 23:59 143  
[DIR]infernal/2023-07-19 00:23 -  
[TXT]operons.txt2023-07-28 09:21 29K 
[ ]scaffolds.200bp.GC2023-07-18 09:10 1.4M 
[ ]scaffolds.200bp.GC.chr2023-07-18 09:12 1.1M 
[ ]scaffolds.200bp.bed2023-07-18 09:09 1.3M 
[ ]scaffolds.500bp.GC2023-07-18 09:10 619K 
[ ]scaffolds.500bp.GC.chr2023-07-18 09:12 472K 
[ ]scaffolds.500bp.bed2023-07-18 09:09 534K 
[ ]scaffolds.1000bp.GC2023-07-18 09:11 376K 
[ ]scaffolds.1000bp.GC.chr2023-07-18 09:12 237K 
[ ]scaffolds.1000bp.bed2023-07-18 09:11 314K 
[ ]scaffolds.GCskew.500bp2023-07-18 09:13 1.8M 
[ ]scaffolds.GCskew.500bp.chr2023-07-18 09:15 1.8M 
[ ]scaffolds.GCskew.500bp.chr.cumulative2023-07-18 09:18 1.1M 
[IMG]scaffolds.RAST.fixed.ORF.Pfam322023-07-22 20:59 48M 
[TXT]scaffolds.RAST.fixed.ORF.Pfam32.hypothetical_protein2242.txt2023-07-22 21:10 7.5K 
[ ]signal-around-TSS-500-1500bp.L2833-Bdellovibrio_bacteriovorus_ICPB_3264_HEPES_100_2.ATAC-L2845-RPM-sort.gz2023-09-28 08:08 4.3M 
[IMG]signal-around-TSS-500-1500bp.L2833-Bdellovibrio_bacteriovorus_ICPB_3264_HEPES_100_2.ATAC-L2845-RPM-sort.png2023-09-28 08:15 2.1M 
[ ]signal-around-TSS-500-1500bp.L2845-Bdellovibrio_bacteriovorus_ICPB_3264_NT_10_2.ATAC-L2845-RPM-sort.gz2023-09-28 08:08 3.9M 
[IMG]signal-around-TSS-500-1500bp.L2845-Bdellovibrio_bacteriovorus_ICPB_3264_NT_10_2.ATAC-L2845-RPM-sort.png2023-09-28 08:15 2.2M 
[ ]signal-around-TSS-500-1500bp.L2859-LB_KAS.ATAC-L2845-RPM-sort.gz2023-09-28 08:08 4.3M 
[IMG]signal-around-TSS-500-1500bp.L2859-LB_KAS.ATAC-L2845-RPM-sort.png2023-09-28 08:15 1.9M 
[ ]signal-around-TSS-500-1500bp.L2860-HEPES_KAS.ATAC-L2845-RPM-sort.gz2023-09-28 08:08 4.5M 
[IMG]signal-around-TSS-500-1500bp.L2860-HEPES_KAS.ATAC-L2845-RPM-sort.png2023-09-28 08:15 1.9M 
[ ]signal-around-TSS-500-2500bp.L2859-LB_KAS.ATAC-L2845-RPM-sort.gz2023-09-28 07:58 6.4M 
[IMG]signal-around-TSS-500-2500bp.L2859-LB_KAS.ATAC-L2845-RPM-sort.png2023-09-28 08:06 969K 
[ ]signal-around-TSS-500-2500bp.L2860-HEPES_KAS.ATAC-L2845-RPM-sort.gz2023-09-28 07:58 6.8M 
[IMG]signal-around-TSS-500-2500bp.L2860-HEPES_KAS.ATAC-L2845-RPM-sort.png2023-09-28 08:06 942K 
[ ]signal-around-TSS-500bp.L2833-Bdellovibrio_bacteriovorus_ICPB_3264_HEPES_100_2.ATAC-L2845-RPM-sort.gz2023-09-28 07:58 2.2M 
[IMG]signal-around-TSS-500bp.L2833-Bdellovibrio_bacteriovorus_ICPB_3264_HEPES_100_2.ATAC-L2845-RPM-sort.png2023-09-28 08:03 1.2M 
[ ]signal-around-TSS-500bp.L2845-Bdellovibrio_bacteriovorus_ICPB_3264_NT_10_2.ATAC-L2845-RPM-sort.gz2023-09-28 07:58 2.0M 
[IMG]signal-around-TSS-500bp.L2845-Bdellovibrio_bacteriovorus_ICPB_3264_NT_10_2.ATAC-L2845-RPM-sort.png2023-09-28 08:04 1.2M 
[DIR]snapshots/2023-07-28 13:14 -  
[ ]ticks.conf2023-07-18 09:41 583  
[ ]z2023-07-28 09:26 82K 
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