## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[S2_tandem_R2.trimgalore.bwameth.hg38.bam] OUTPUT=S2_tandem_R2.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=S2_tandem_R2.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Feb 17 01:03:23 PST 2023

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	926804	0	0	130006	0	0.140273	2986807

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.733227
3.0	2.27085
4.0	2.66505
5.0	2.954088
6.0	3.166018
7.0	3.321412
8.0	3.43535
9.0	3.518893
10.0	3.580149
11.0	3.625064
12.0	3.657996
13.0	3.682144
14.0	3.699849
15.0	3.712831
16.0	3.72235
17.0	3.729329
18.0	3.734447
19.0	3.738199
20.0	3.74095
21.0	3.742968
22.0	3.744447
23.0	3.745531
24.0	3.746326
25.0	3.74691
26.0	3.747337
27.0	3.747651
28.0	3.74788
29.0	3.748049
30.0	3.748173
31.0	3.748263
32.0	3.74833
33.0	3.748378
34.0	3.748414
35.0	3.74844
36.0	3.748459
37.0	3.748473
38.0	3.748484
39.0	3.748491
40.0	3.748497
41.0	3.748501
42.0	3.748504
43.0	3.748506
44.0	3.748508
45.0	3.748509
46.0	3.74851
47.0	3.74851
48.0	3.748511
49.0	3.748511
50.0	3.748511
51.0	3.748512
52.0	3.748512
53.0	3.748512
54.0	3.748512
55.0	3.748512
56.0	3.748512
57.0	3.748512
58.0	3.748512
59.0	3.748512
60.0	3.748512
61.0	3.748512
62.0	3.748512
63.0	3.748512
64.0	3.748512
65.0	3.748512
66.0	3.748512
67.0	3.748512
68.0	3.748512
69.0	3.748512
70.0	3.748512
71.0	3.748512
72.0	3.748512
73.0	3.748512
74.0	3.748512
75.0	3.748512
76.0	3.748512
77.0	3.748512
78.0	3.748512
79.0	3.748512
80.0	3.748512
81.0	3.748512
82.0	3.748512
83.0	3.748512
84.0	3.748512
85.0	3.748512
86.0	3.748512
87.0	3.748512
88.0	3.748512
89.0	3.748512
90.0	3.748512
91.0	3.748512
92.0	3.748512
93.0	3.748512
94.0	3.748512
95.0	3.748512
96.0	3.748512
97.0	3.748512
98.0	3.748512
99.0	3.748512
100.0	3.748512