## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[S2_tandem_R2.trimgalore.bwameth.dm6.bam] OUTPUT=S2_tandem_R2.trimgalore.bwameth.dm6.dedup.bam METRICS_FILE=S2_tandem_R2.trimgalore.bwameth.dm6.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Tue Feb 21 01:59:58 PST 2023

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	59529395	0	0	2993741	0	0.05029	571845561

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.901135
3.0	2.713179
4.0	3.44494
5.0	4.104355
6.0	4.698577
7.0	5.234051
8.0	5.716585
9.0	6.151413
10.0	6.543252
11.0	6.896352
12.0	7.214543
13.0	7.501275
14.0	7.75966
15.0	7.992499
16.0	8.202318
17.0	8.391394
18.0	8.561777
19.0	8.715315
20.0	8.853673
21.0	8.978352
22.0	9.090705
23.0	9.19195
24.0	9.283186
25.0	9.365402
26.0	9.439489
27.0	9.506251
28.0	9.566413
29.0	9.620628
30.0	9.669482
31.0	9.713506
32.0	9.753178
33.0	9.788928
34.0	9.821143
35.0	9.850173
36.0	9.876333
37.0	9.899907
38.0	9.92115
39.0	9.940293
40.0	9.957544
41.0	9.973089
42.0	9.987097
43.0	9.99972
44.0	10.011095
45.0	10.021346
46.0	10.030583
47.0	10.038907
48.0	10.046408
49.0	10.053167
50.0	10.059258
51.0	10.064747
52.0	10.069693
53.0	10.074151
54.0	10.078167
55.0	10.081787
56.0	10.085048
57.0	10.087988
58.0	10.090636
59.0	10.093023
60.0	10.095174
61.0	10.097112
62.0	10.098858
63.0	10.100432
64.0	10.10185
65.0	10.103128
66.0	10.10428
67.0	10.105318
68.0	10.106253
69.0	10.107096
70.0	10.107855
71.0	10.10854
72.0	10.109156
73.0	10.109712
74.0	10.110213
75.0	10.110664
76.0	10.111071
77.0	10.111437
78.0	10.111768
79.0	10.112065
80.0	10.112333
81.0	10.112575
82.0	10.112793
83.0	10.112989
84.0	10.113166
85.0	10.113325
86.0	10.113469
87.0	10.113598
88.0	10.113715
89.0	10.11382
90.0	10.113914
91.0	10.114
92.0	10.114077
93.0	10.114146
94.0	10.114208
95.0	10.114265
96.0	10.114315
97.0	10.114361
98.0	10.114402
99.0	10.114439
100.0	10.114473