Index of /kundaje/marinovg/oak/papers/2023_chrM_SMAC-seq/2023-02-10-S2-SMF

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]OSC_tandem_R1.fastq.lines2023-02-17 16:59 10  
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.CG-GC-meth-perc2023-02-21 18:38 75  
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup.CG-GC-meth-perc2023-02-21 18:37 75  
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup.bam2023-02-21 10:52 8.4G 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup.bam.bai2023-02-21 17:17 519K 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup.bigWig2023-02-22 11:55 398M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup.chrM.wig2023-02-22 11:58 427K 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup.metric2023-02-21 10:52 2.4K 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup.wig2023-02-21 19:53 2.4G 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHG.bedGraph.gz2023-02-21 18:37 76M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.bigWig2023-02-22 11:58 42M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.chrM.wig2023-02-22 11:57 4.0K 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.wig2023-02-21 20:03 165M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.bigWig2023-02-22 11:58 41M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.chrM.wig2023-02-22 11:57 4.0K 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.wig2023-02-21 20:03 164M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.bigWig2023-02-22 11:58 80M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.chrM.wig2023-02-22 11:57 40K 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.wig2023-02-21 20:04 405M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.bigWig2023-02-22 11:58 80M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.chrM.wig2023-02-22 11:57 40K 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.wig2023-02-21 20:05 399M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.bedGraph.gz2023-02-21 18:37 237M 
[ ]OSC_tandem_R1.trimgalore.bwameth.dm6.dedup_CpG.bedGraph.gz2023-02-21 18:37 82M 
[ ]OSC_tandem_R2.fastq.lines2023-02-17 16:59 10  
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.CG-GC-meth-perc2023-02-21 18:47 76  
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup.CG-GC-meth-perc2023-02-21 18:44 73  
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup.bam2023-02-21 10:55 9.4G 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup.bam.bai2023-02-21 17:17 523K 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup.bigWig2023-02-22 11:55 414M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup.chrM.wig2023-02-22 11:57 405K 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup.metric2023-02-21 10:55 2.4K 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup.wig2023-02-21 20:16 2.5G 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHG.bedGraph.gz2023-02-21 18:41 77M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.bigWig2023-02-22 11:58 42M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.chrM.wig2023-02-22 11:57 4.0K 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.wig2023-02-21 20:03 166M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.bigWig2023-02-22 11:58 42M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.chrM.wig2023-02-22 11:57 4.0K 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.wig2023-02-21 20:03 164M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.bigWig2023-02-22 11:58 81M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.chrM.wig2023-02-22 11:57 40K 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.wig2023-02-21 20:05 406M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.bigWig2023-02-22 11:58 80M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.chrM.wig2023-02-22 11:57 40K 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.wig2023-02-21 20:05 398M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.bedGraph.gz2023-02-21 18:41 240M 
[ ]OSC_tandem_R2.trimgalore.bwameth.dm6.dedup_CpG.bedGraph.gz2023-02-21 18:41 83M 
[ ]S2_McviPI_R1.fastq.lines2023-02-17 16:58 10  
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.CG-GC-meth-perc2023-02-21 18:27 75  
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup.CG-GC-meth-perc2023-02-21 18:26 75  
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup.bam2023-02-21 10:39 6.5G 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup.bam.bai2023-02-21 17:16 517K 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup.bigWig2023-02-22 11:54 382M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup.chrM.wig2023-02-22 11:58 483K 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup.metric2023-02-21 10:39 2.4K 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup.wig2023-02-21 19:39 2.2G 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHG.bedGraph.gz2023-02-21 18:35 73M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.bigWig2023-02-22 11:58 37M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.chrM.wig2023-02-22 11:57 4.1K 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.wig2023-02-21 20:03 154M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.bigWig2023-02-22 11:58 36M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.chrM.wig2023-02-22 11:57 4.1K 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.wig2023-02-21 20:03 149M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.bigWig2023-02-22 11:58 75M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.chrM.wig2023-02-22 11:57 41K 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.wig2023-02-21 20:05 385M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.bigWig2023-02-22 11:58 73M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.chrM.wig2023-02-22 11:57 41K 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.wig2023-02-21 20:05 368M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CHH.bedGraph.gz2023-02-21 18:35 228M 
[ ]S2_McviPI_R1.trimgalore.bwameth.dm6.dedup_CpG.bedGraph.gz2023-02-21 18:35 74M 
[ ]S2_SssI_R1.fastq.lines2023-02-17 16:58 10  
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.CG-GC-meth-perc2023-02-21 18:28 75  
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup.CG-GC-meth-perc2023-02-21 18:31 75  
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup.bam2023-02-21 10:33 5.0G 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup.bam.bai2023-02-21 17:16 506K 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup.bigWig2023-02-22 11:55 356M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup.chrM.wig2023-02-22 11:58 493K 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup.metric2023-02-21 10:33 2.4K 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup.wig2023-02-21 19:24 2.0G 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHG.bedGraph.gz2023-02-21 18:34 64M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.bigWig2023-02-22 11:59 38M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.chrM.wig2023-02-22 11:58 4.0K 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.wig2023-02-21 20:03 157M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.bigWig2023-02-22 11:58 36M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.chrM.wig2023-02-22 11:58 4.0K 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.wig2023-02-21 20:03 147M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.bigWig2023-02-22 11:58 56M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.chrM.wig2023-02-22 11:58 42K 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.wig2023-02-21 20:05 320M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.bigWig2023-02-22 11:58 53M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.chrM.wig2023-02-22 11:58 42K 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.wig2023-02-21 20:05 295M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CHH.bedGraph.gz2023-02-21 18:34 201M 
[ ]S2_SssI_R1.trimgalore.bwameth.dm6.dedup_CpG.bedGraph.gz2023-02-21 18:34 74M 
[ ]S2_tandem_R1.fastq.lines2023-02-17 16:59 10  
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.CG-GC-meth-perc2023-02-21 18:40 75  
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup.CG-GC-meth-perc2023-02-21 18:41 75  
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup.bam2023-02-21 10:52 9.1G 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup.bam.bai2023-02-21 17:17 519K 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup.bigWig2023-02-22 11:55 403M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup.chrM.wig2023-02-22 11:58 428K 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup.metric2023-02-21 10:52 2.5K 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup.wig2023-02-21 20:05 2.3G 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHG.bedGraph.gz2023-02-21 18:40 76M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.bigWig2023-02-22 11:59 41M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.chrM.wig2023-02-22 11:58 4.0K 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.wig2023-02-21 20:03 164M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.bigWig2023-02-22 11:58 41M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.chrM.wig2023-02-22 11:58 4.0K 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.wig2023-02-21 20:03 163M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.bigWig2023-02-22 11:58 79M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.chrM.wig2023-02-22 11:58 40K 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.wig2023-02-21 20:05 400M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.bigWig2023-02-22 11:58 78M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.chrM.wig2023-02-22 11:58 40K 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.wig2023-02-21 20:05 388M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CHH.bedGraph.gz2023-02-21 18:40 237M 
[ ]S2_tandem_R1.trimgalore.bwameth.dm6.dedup_CpG.bedGraph.gz2023-02-21 18:40 82M 
[ ]S2_tandem_R1.trimgalore.bwameth.hg38.dedup.metric2023-02-17 09:05 2.4K 
[ ]S2_tandem_R2.fastq.lines2023-02-17 16:59 10  
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.CG-GC-meth-perc2023-02-21 18:41 75  
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup.CG-GC-meth-perc2023-02-21 18:40 75  
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup.bam2023-02-21 10:55 8.8G 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup.bam.bai2023-02-21 17:17 519K 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup.bigWig2023-02-22 11:55 398M 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup.chrM.wig2023-02-22 11:59 433K 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup.metric2023-02-21 10:55 2.5K 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup.wig2023-02-21 20:03 2.3G 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHG.bedGraph.gz2023-02-21 18:38 76M 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.chrM.wig2023-02-22 11:58 4.0K 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov5.wig2023-02-21 20:03 164M 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.bigWig2023-02-22 11:58 41M 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.chrM.wig2023-02-22 11:58 4.0K 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.CpG-only.minCov10.wig2023-02-21 20:03 162M 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.bigWig2023-02-22 11:58 79M 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.chrM.wig2023-02-22 11:58 41K 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov5.wig2023-02-21 20:05 399M 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.bigWig2023-02-22 11:58 78M 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.chrM.wig2023-02-22 11:58 40K 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.GpC-only.minCov10.wig2023-02-21 20:05 388M 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CHH.bedGraph.gz2023-02-21 18:38 236M 
[ ]S2_tandem_R2.trimgalore.bwameth.dm6.dedup_CpG.bedGraph.gz2023-02-21 18:38 81M 
[ ]S2_tandem_R2.trimgalore.bwameth.hg38.dedup.metric2023-02-17 09:06 2.4K 
[ ]SAMstats.dedup.table2023-02-22 11:53 500  
[ ]SAMstats.files2023-02-22 11:53 1.0K 
[ ]SAMstats.non-dedup.table2023-02-22 11:53 585  
[ ]SAMstats.table2023-02-22 11:53 1.1K 
[ ]SAMstats_files.tar.gz2023-02-22 11:53 792  
[ ]dm3---chrM.DN-freq2023-02-12 20:03 392  
[ ]dm3---dm3.DN-freq2023-02-12 20:04 700  
[ ]dm6---dm6.DN-freq2023-02-12 20:04 681  
[ ]fastaDinucleotideFrequencies.files2023-02-12 20:10 364  
[ ]fastaDinucleotideFrequencies.table2023-02-14 20:45 1.6K 
[ ]hg19---chrM.DN-freq2023-02-12 20:03 398  
[ ]hg19---hg19.DN-freq2023-02-12 20:20 708  
[ ]mm9---mm9.DN-freq2023-02-12 20:19 712  
[ ]mm10---chrM.DN-freq2023-02-12 20:03 397  
[ ]mm10---mm10.DN-freq2023-02-12 20:19 713  
[ ]sacCer3---chrM.DN-freq2023-02-12 20:03 405  
[ ]sacCer3---sacCer3.DN-freq2023-02-12 20:03 441  
[TXT]wget.sh2023-02-17 09:07 2.1K 
[ ]z2023-02-22 11:54 11K 
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