2198	11.0	0.7	1.3	chr1	1016061	1016360	(247940062)	C	AluSx1	SINE/Alu	(14)	298	1	1282
16	24.5	1.6	3.2	chr1	1375060	1375120	(247581302)	+	(GCCCGGC)n	Simple_repeat	1	62	(0)	1639
1386	23.6	10.9	6.3	chr1	1858667	1859016	(247097406)	+	MER119	DNA/hAT-Charlie	31	411	(172)	2482
16	13.2	0.0	0.0	chr1	2801554	2801578	(246154844)	+	(CA)n	Simple_repeat	1	25	(0)	3463
8926	18.1	6.6	4.9	chr1	22634005	22635725	(226320697)	C	MER52A	LTR/ERV1	(0)	1755	4	40552
2037	14.2	0.0	0.7	chr1	22635726	22636021	(226320401)	C	AluJb	SINE/Alu	(6)	306	13	40553
16	5.2	0.0	0.0	chr1	23531348	23531367	(225425055)	+	(C)n	Simple_repeat	1	20	(0)	42655
638	29.3	5.0	3.8	chr1	23531790	23532027	(225424395)	C	MIRb	SINE/MIR	(6)	262	22	42656
1705	13.5	9.2	0.7	chr1	28091465	28091763	(220864659)	C	Tigger3a	DNA/TcMar-Tigger	(12)	336	10	53216
2303	7.3	0.0	2.4	chr1	28091876	28092164	(220864258)	+	AluSc5	SINE/Alu	1	282	(27)	53217
1318	13.3	0.5	3.5	chr1	28153019	28153221	(220803201)	+	AluJo	SINE/Alu	7	203	(109)	53389
1948	12.1	0.3	10.1	chr1	28153464	28153607	(220802815)	+	AluJb	SINE/Alu	1	133	(179)	53390
13	7.5	7.1	0.0	chr1	28737394	28737421	(220219001)	+	(TTCC)n	Simple_repeat	1	30	(0)	55024
403	6.7	0.0	0.0	chr1	31431749	31432232	(217524190)	+	(GATAGGGTG)n	Simple_repeat	1	484	(0)	60677
770	21.7	3.5	0.6	chr1	32464203	32464369	(216492053)	+	MLT1C	LTR/ERVL-MaLR	296	467	(0)	62900
186	23.6	8.2	6.3	chr1	32464370	32464464	(216491958)	+	L2a	LINE/L2	3297	3393	(33)	62894
272	33.0	13.7	0.0	chr1	32729099	32729274	(216227148)	+	MIRb	SINE/MIR	6	209	(59)	63597
1469	14.3	0.0	1.8	chr1	32729793	32730016	(216226406)	+	AluJb	SINE/Alu	85	304	(8)	63598
216	30.6	5.8	3.0	chr1	32730099	32730199	(216226223)	C	UCON132b	DNA/hAT-Tip100	(39)	109	6	63599
495	23.7	5.0	0.0	chr1	32730326	32730439	(216225983)	+	MIRb	SINE/MIR	14	133	(135)	63600
26	3.5	0.0	0.0	chr1	38804535	38804564	(210151858)	+	(TGGGG)n	Simple_repeat	1	30	(0)	75358
495	23.4	18.0	3.6	chr1	40097466	40097687	(208858735)	C	MIR	SINE/MIR	(0)	262	2	78100
563	25.7	11.8	2.2	chr1	41161491	41161812	(207794610)	+	L1ME4c	LINE/L1	323	679	(151)	80278
391	17.9	2.5	1.3	chr1	41161836	41161914	(207794508)	+	MLT1B	LTR/ERVL-MaLR	2	81	(309)	80279
5134	17.0	15.0	10.4	chr1	41161919	41163496	(207792926)	+	MER52D	LTR/ERV1	461	2123	(0)	80280
13	17.4	5.3	5.0	chr1	42334856	42334912	(206621510)	+	(AGGCCCC)n	Simple_repeat	1	60	(0)	82309
387	33.7	7.0	3.0	chr1	44029444	44029746	(204926676)	+	L2b	LINE/L2	3022	3337	(38)	85304
214	34.3	5.9	4.8	chr1	47970269	47970519	(200985903)	+	L2a	LINE/L2	2723	2976	(443)	92653
494	26.0	7.0	0.7	chr1	47970567	47970713	(200985709)	C	MLT1H	LTR/ERVL-MaLR	(0)	549	393	92654
322	27.5	7.4	3.2	chr1	47970726	47970950	(200985472)	C	MLT1H	LTR/ERVL-MaLR	(101)	310	68	92654
193	34.0	5.5	3.7	chr1	47971195	47971301	(200985121)	C	L2a	LINE/L2	(1)	3425	3317	92655
2319	10.9	0.6	0.6	chr1	50920020	50920331	(198036091)	+	AluSx	SINE/Alu	1	312	(0)	97633
422	33.3	4.5	2.5	chr1	50920332	50920462	(198035960)	+	MLT2F	LTR/ERVL	107	244	(419)	97632
2231	16.9	5.0	3.4	chr1	50920487	50921020	(198035402)	+	L1MEc	LINE/L1	4790	5332	(1905)	97626
2171	8.9	2.5	0.0	chr1	51665879	51666147	(197290275)	C	AluSx	SINE/Alu	(36)	276	1	99219
227	27.6	18.6	2.0	chr1	51666179	51666374	(197290048)	C	L2	LINE/L2	(1397)	2022	1787	99220
374	28.7	10.8	0.0	chr1	54340924	54341038	(194615384)	+	MIRb	SINE/MIR	18	146	(122)	104892
329	32.5	8.4	3.4	chr1	56688427	56688633	(192267789)	C	L2c	LINE/L2	(141)	3234	3010	109327
291	25.2	5.0	3.4	chr1	58813788	58813906	(190142516)	+	L2c	LINE/L2	3263	3383	(4)	113578
1902	14.1	8.7	0.6	chr1	61261276	61261611	(187694811)	+	MER47A	DNA/TcMar-Tigger	1	366	(0)	117879
22	20.2	7.4	1.1	chr1	63523647	63523727	(185432695)	+	(TCTCTG)n	Simple_repeat	1	87	(0)	122201
12	17.6	4.0	5.8	chr1	63594013	63594062	(185362360)	+	(CTCTCC)n	Simple_repeat	1	52	(0)	122314
2499	4.6	0.0	6.1	chr1	63594660	63594985	(185361437)	+	AluY	SINE/Alu	1	306	(5)	122315
267	30.3	12.6	9.2	chr1	64512420	64512495	(184443927)	C	MIRb	SINE/MIR	(191)	77	3	124024
23831	7.7	0.7	0.8	chr1	65462003	65468172	(183488250)	C	L1PA6	LINE/L1	(11)	6316	178	125830
1809	19.5	0.7	0.0	chr1	66975247	66975553	(181980869)	+	AluJb	SINE/Alu	2	310	(2)	128044
3958	15.3	4.5	3.2	chr1	67249146	67251170	(181705252)	C	MER57-int	LTR/ERV1	(2208)	5329	3592	128486
2368	11.3	0.7	0.0	chr1	70377116	70377415	(178579007)	C	AluSx1	SINE/Alu	(10)	302	1	133312
2355	10.9	0.0	1.3	chr1	70377587	70377889	(178578533)	C	AluSq2	SINE/Alu	(13)	300	2	133313
599	11.1	0.0	0.0	chr1	77779898	77779987	(171176435)	+	5S	rRNA	1	90	(31)	143484
870	24.4	8.9	4.5	chr1	78454552	78454925	(170501497)	+	L2	LINE/L2	1466	1857	(1562)	144607
316	25.4	2.1	11.2	chr1	78454949	78455108	(170501314)	+	MamRep38	DNA/hAT	150	294	(1)	144623
1509	24.2	14.3	1.3	chr1	78617589	78618057	(170338365)	+	LTR41	LTR/ERVL	5	544	(224)	144818
6387	16.5	2.3	1.3	chr1	81160659	81161763	(167794659)	+	L1M1	LINE/L1	20	1136	(6429)	148078
655	14.3	0.0	0.0	chr1	81161764	81161861	(167794561)	+	AluJb	SINE/Alu	205	302	(10)	148079
18602	12.0	4.5	1.2	chr1	81161866	81166131	(167790291)	+	L1M1	LINE/L1	2840	7236	(487)	148078
18	7.5	0.0	0.0	chr1	84893245	84893272	(164063150)	+	(GCCCC)n	Simple_repeat	1	28	(0)	153270
1328	21.8	13.2	3.0	chr1	85394095	85394501	(163561921)	+	MSTB2	LTR/ERVL-MaLR	1	455	(2)	154103
1769	24.1	12.7	9.3	chr1	85394502	85395394	(163561028)	+	MER34B-int	LTR/ERV1	1198	2378	(4261)	154101
430	25.5	9.8	8.2	chr1	86993598	86993879	(161962543)	C	MER34B	LTR/ERV1	(0)	587	301	156458
21	23.3	0.0	0.0	chr1	88683885	88683929	(160272493)	+	A-rich	Low_complexity	1	45	(0)	158815
12	20.4	5.6	3.5	chr1	88684485	88684538	(160271884)	+	(CTCTCCC)n	Simple_repeat	1	57	(0)	158816
2244	12.4	0.0	0.0	chr1	90978070	90978368	(157978054)	+	AluSq2	SINE/Alu	1	299	(14)	162050
190	13.3	0.0	0.0	chr1	90978525	90978554	(157977868)	C	MIR	SINE/MIR	(131)	131	102	162051
15	12.2	0.0	0.0	chr1	93909201	93909227	(155047195)	+	(GCGG)n	Simple_repeat	1	27	(0)	167023
18	30.7	1.3	2.5	chr1	93909334	93909412	(155047010)	+	(CGG)n	Simple_repeat	1	80	(0)	167024
269	41.0	3.0	4.7	chr1	96705571	96705908	(152250514)	+	L2b	LINE/L2	3019	3350	(25)	171035
14	21.4	0.0	7.1	chr1	97921042	97921097	(151035325)	+	(GCGGC)n	Simple_repeat	1	56	(0)	172697
201	30.0	4.3	6.2	chr1	100037817	100037912	(148918510)	+	MIRb	SINE/MIR	96	189	(79)	175849
2153	13.5	0.3	1.0	chr1	100350912	100351222	(148605200)	+	AluSz6	SINE/Alu	1	309	(3)	176445
322	32.6	0.0	0.0	chr1	100351338	100351432	(148604990)	+	MamSINE1	SINE/tRNA-RTE	195	289	(1)	176446
45	6.0	2.7	2.6	chr1	108536859	108536933	(140419489)	+	(GAGGGA)n	Simple_repeat	1	77	(0)	186886
853	25.0	5.5	1.8	chr1	108536964	108537191	(140419231)	+	MLT1J2	LTR/ERVL-MaLR	1	237	(211)	186887
12	4.7	4.5	0.0	chr1	111619749	111619770	(137336652)	+	(GCGT)n	Simple_repeat	1	23	(0)	191803
22	24.0	0.0	0.0	chr1	111619785	111619838	(137336584)	+	(CGC)n	Simple_repeat	1	54	(0)	191804
43	2.3	0.0	0.0	chr1	111619876	111619919	(137336503)	+	(GGAGGAGGT)n	Simple_repeat	1	44	(0)	191805
22	0.0	0.0	0.0	chr1	115641538	115641561	(133314861)	+	(TG)n	Simple_repeat	1	24	(0)	198478
12	27.4	2.0	2.0	chr1	115641680	115641729	(133314693)	+	(GTGT)n	Simple_repeat	1	51	(0)	198479
14	23.5	4.3	4.1	chr1	115641866	115641935	(133314487)	+	(GGCTG)n	Simple_repeat	1	73	(0)	198480
15	26.0	3.3	1.6	chr1	115641931	115641991	(133314431)	+	(GGCAGC)n	Simple_repeat	1	63	(0)	198481
13	4.8	4.5	0.0	chr1	115641973	115641994	(133314428)	+	(GCG)n	Simple_repeat	1	23	(0)	198482
13	22.3	4.3	5.5	chr1	115642016	115642085	(133314337)	+	(CGCGGAC)n	Simple_repeat	1	73	(0)	198483
26130	6.0	0.6	0.1	chr1	116974739	116980865	(131975557)	+	L1PA5	LINE/L1	1	6152	(2)	200574
2597	8.4	5.0	1.9	chr1	144101293	144106919	(104849503)	+	(TGGCTGGCT)n	Simple_repeat	1	5911	(0)	208844
1597	0.0	0.0	0.0	chr1	146376807	146376970	(102579452)	+	U1	snRNA	1	164	(1)	212533
26	23.2	1.4	1.4	chr1	147600187	147600258	(101356164)	+	(CGC)n	Simple_repeat	1	73	(0)	214369
28	0.0	0.0	0.0	chr1	150364656	150364681	(98591741)	+	(CCG)n	Simple_repeat	1	26	(0)	218877
12	9.2	0.0	4.0	chr1	150364717	150364741	(98591681)	+	(GGC)n	Simple_repeat	1	25	(0)	218878
458	13.9	4.5	2.3	chr1	150667464	150667549	(98288873)	+	FLAM_A	SINE/Alu	44	131	(11)	219569
2581	6.4	0.3	0.6	chr1	150667582	150667893	(98288529)	C	AluY	SINE/Alu	(0)	311	1	219570
193	35.0	13.0	6.1	chr1	150667914	150668190	(98288232)	+	L2c	LINE/L2	3022	3320	(67)	219571
2655	15.6	3.1	1.9	chr1	151936249	151936724	(97019698)	+	LTR15	LTR/ERV1	1	482	(11)	222147
59	9.6	1.1	0.0	chr1	155244786	155244875	(93711547)	+	(GAGA)n	Simple_repeat	1	91	(0)	227608
13	15.7	2.7	2.7	chr1	156500883	156500931	(92455491)	+	G-rich	Low_complexity	1	49	(0)	230238
29628	10.6	3.9	2.6	chr1	160923430	160923978	(88032444)	C	MER57-int	LTR/ERV1	(3963)	3574	3118	236466
941	28.3	11.7	3.5	chr1	162740381	162740779	(86215643)	+	L2a	LINE/L2	2974	3409	(17)	239708
14	6.9	0.0	10.5	chr1	165827486	165827523	(83128899)	+	G-rich	Low_complexity	1	38	(0)	244381
2290	8.3	0.7	0.0	chr1	167103841	167104130	(81852292)	+	AluY	SINE/Alu	2	293	(18)	246160
3179	17.7	2.7	0.9	chr1	167574342	167575357	(81381065)	+	LTR25-int	LTR/ERV1	3753	5217	(0)	246922
1224	29.4	5.6	0.9	chr1	169325026	169325465	(79630957)	C	LTR16B2	LTR/ERVL	(0)	462	1	249787
2231	12.5	0.7	0.0	chr1	169818680	169818983	(79137439)	C	AluSx	SINE/Alu	(5)	307	2	250504
9025	20.8	8.7	7.3	chr1	169818984	169819626	(79136796)	C	HUERS-P3b-int	LTR/ERV1	(3372)	4046	3434	250502
14	23.4	2.1	2.1	chr1	174159974	174160020	(74796402)	+	(TGC)n	Simple_repeat	1	48	(0)	256811
258	25.4	0.0	0.0	chr1	179586108	179586166	(69370256)	C	HAL1ME	LINE/L1	(2285)	180	122	265037
20	0.0	0.0	0.0	chr1	179586177	179586198	(69370224)	+	(A)n	Simple_repeat	1	22	(0)	265038
26	16.7	3.3	0.0	chr1	179586273	179586332	(69370090)	+	(TCGGCGC)n	Simple_repeat	1	62	(0)	265039
493	30.5	5.0	2.3	chr1	181340872	181341086	(67615336)	C	MIRc	SINE/MIR	(25)	243	23	267835
17	9.7	2.9	2.8	chr1	183805083	183805117	(65151305)	+	(GCTC)n	Simple_repeat	1	36	(0)	271671
13	8.5	4.0	0.0	chr1	183805140	183805164	(65151258)	+	(CGG)n	Simple_repeat	1	26	(0)	271672
41	4.1	1.9	1.9	chr1	184386769	184386820	(64569602)	+	(AC)n	Simple_repeat	1	53	(0)	272566
12	22.4	3.9	3.8	chr1	184387016	184387066	(64569356)	+	(CCCT)n	Simple_repeat	1	53	(0)	272567
1306	14.0	0.0	7.4	chr1	186402405	186402625	(62553797)	C	AluJo	SINE/Alu	(22)	290	86	275540
616	24.0	2.3	0.0	chr1	186402635	186402759	(62553663)	C	AluJo	SINE/Alu	(56)	256	129	275542
568	20.2	11.3	0.8	chr1	186402763	186402881	(62553541)	C	AluJr4	SINE/Alu	(179)	133	1	275543
16	9.3	0.0	0.0	chr1	193070141	193070163	(55886259)	+	(A)n	Simple_repeat	1	23	(0)	284301
2178	11.9	0.3	0.0	chr1	203968429	203968722	(44987700)	C	AluSx	SINE/Alu	(16)	296	2	300692
5852	10.9	4.6	5.5	chr1	203968723	203969301	(44987121)	C	MER57-int	LTR/ERV1	(3208)	2738	2167	300686
22	23.5	7.4	3.0	chr1	204151969	204152074	(44804348)	+	(CGGCCCG)n	Simple_repeat	1	135	(11)	301083
13	8.5	0.0	3.7	chr1	204152075	204152101	(44804321)	+	(CCCCG)n	Simple_repeat	1	27	(0)	301084
270	32.6	5.2	5.8	chr1	204751918	204751933	(44204489)	+	SVA_D	Retroposon/SVA	188	231	(1155)	302187
644	18.2	5.5	4.0	chr1	204751934	204751964	(44204458)	C	FLAM_A	SINE/Alu	(13)	129	2	302188
6162	10.8	15.7	2.1	chr1	204751965	204752739	(44203683)	+	MER52C	LTR/ERV1	1	954	(324)	302189
22	20.9	0.0	0.0	chr1	212567134	212567174	(36389248)	+	(T)n	Simple_repeat	1	41	(0)	314770
1225	25.0	11.8	0.6	chr1	212703850	212704484	(36251938)	C	L2a	LINE/L2	(32)	3394	2671	314997
31	9.2	0.0	0.0	chr1	220528033	220528079	(28428343)	+	(GGA)n	Simple_repeat	1	47	(0)	326370
13	13.2	6.7	4.2	chr1	220528171	220528215	(28428207)	+	(CGCGC)n	Simple_repeat	1	48	(0)	326371
15	23.4	2.8	5.4	chr1	220528499	220528570	(28427852)	+	(CCGCCTC)n	Simple_repeat	1	74	(0)	326372
13	18.4	0.0	0.0	chr1	220528630	220528660	(28427762)	+	(CTCCTC)n	Simple_repeat	1	31	(0)	326373
18	16.0	6.3	6.0	chr1	220787019	220787097	(28169325)	+	(TGGCGCC)n	Simple_repeat	1	84	(0)	326739
19	3.7	0.0	3.3	chr1	223845786	223845815	(25110607)	+	(GGC)n	Simple_repeat	1	30	(0)	331313
17	19.6	6.7	3.8	chr1	223845956	223846030	(25110392)	+	(CCGCG)n	Simple_repeat	1	80	(0)	331314
1987	14.1	1.1	1.1	chr1	224011691	224016553	(24939869)	+	(AATGG)n	Simple_repeat	1	4914	(0)	331634
2413	8.7	0.0	0.0	chr1	224373548	224373847	(24582575)	+	AluSg4	SINE/Alu	1	300	(10)	332446
23	21.6	0.0	0.0	chr1	224616317	224616327	(24340095)	+	(GCAGCG)n	Simple_repeat	1	21	(42)	332883
21	10.0	0.0	0.0	chr1	224616328	224616360	(24340062)	+	(GGC)n	Simple_repeat	1	33	(0)	332884
23	21.6	0.0	0.0	chr1	224616361	224616379	(24340043)	+	(GCAGCG)n	Simple_repeat	22	63	(0)	332883
5946	21.4	8.9	6.5	chr1	224914000	224916480	(24039942)	+	LTR49-int	LTR/ERV1	2741	5288	(1043)	333357
200	30.8	10.1	3.6	chr1	225777463	225777600	(23178822)	+	L2c	LINE/L2	3231	3378	(9)	334567
352	25.4	7.3	5.3	chr1	226457147	226457279	(22499143)	C	Charlie16a	DNA/hAT-Charlie	(112)	230	95	335939
199	25.7	2.6	9.8	chr1	227566322	227566403	(21390019)	C	L2b	LINE/L2	(61)	3314	3239	337658
5628	15.3	4.2	2.5	chr1	228187767	228189217	(20767205)	C	L1MA4	LINE/L1	(824)	5480	4336	338409
2020	13.3	0.0	4.1	chr1	228189228	228189542	(20766880)	+	AluJb	SINE/Alu	9	310	(2)	338412
40	29.6	0.0	0.0	chr1	228635559	228635667	(20320755)	+	(CA)n	Simple_repeat	1	109	(0)	338951
63	31.5	1.7	0.8	chr1	228635679	228635919	(20320503)	+	GA-rich	Low_complexity	1	245	(0)	338952
18	24.5	0.0	0.0	chr1	228646795	228646837	(20309585)	+	(CA)n	Simple_repeat	1	43	(0)	338981
563	22.5	0.0	1.6	chr1	228647911	228648032	(20308390)	C	5S	rRNA	(1)	120	1	338982
1533	26.0	7.4	3.2	chr1	233635662	233636668	(15319754)	C	L2a	LINE/L2	(0)	3426	2378	346694
17	18.1	0.0	7.0	chr1	233904579	233904635	(15051787)	+	G-rich	Low_complexity	1	57	(0)	347067
12	11.6	3.3	3.2	chr1	233904670	233904699	(15051723)	+	(CGACC)n	Simple_repeat	1	31	(0)	347068
474	26.9	8.6	0.0	chr1	234125238	234125408	(14831014)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	225	347395
247	21.3	0.0	0.0	chr1	234125402	234125448	(14830974)	C	MLT1I	LTR/ERVL-MaLR	(279)	132	86	347395
241	30.6	9.8	5.5	chr1	234828865	234829065	(14127357)	C	MIRb	SINE/MIR	(0)	268	64	348500
2937	7.3	0.0	0.0	chr1	236096779	236097148	(12859274)	C	LTR10A	LTR/ERV1	(62)	547	178	350992
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
428	34.5	3.4	0.6	chr1	239801100	239801271	(9155151)	C	MIR	SINE/MIR	(7)	255	79	356667
44	7.1	1.7	0.0	chr1	240101492	240101550	(8854872)	+	(GT)n	Simple_repeat	1	60	(0)	357150
1289	13.8	0.0	5.5	chr1	240101551	240101768	(8854654)	C	AluJr	SINE/Alu	(28)	284	79	357151
500	37.1	0.0	4.4	chr1	240341654	240341901	(8614521)	C	L1MEi	LINE/L1	(1617)	595	359	357488
17	24.8	5.7	3.2	chr1	241725296	241725383	(7231039)	+	A-rich	Low_complexity	1	93	(0)	359725
5702	14.2	1.6	0.3	chr10	3524658	3525868	(130271554)	+	L1PB3	LINE/L1	4927	6154	(0)	375207
255	6.4	2.1	0.0	chr10	4334165	4334211	(129463211)	+	MER57B1	LTR/ERV1	215	262	(139)	376352
5229	8.3	0.0	0.0	chr10	4805766	4806453	(128990969)	+	L1PA8A	LINE/L1	5426	6113	(18)	376945
3107	26.8	6.2	4.6	chr10	4806454	4807166	(128990256)	C	L1M5	LINE/L1	(1102)	5044	4317	376944
2449	13.7	1.4	0.7	chr10	4910454	4911169	(128886253)	+	MER61-int	LTR/ERV1	958	1356	(3861)	377080
375	31.3	12.4	0.9	chr10	11599005	11599217	(122198205)	C	Tigger19a	DNA/TcMar-Tigger	(11)	312	72	387128
939	25.1	7.9	3.3	chr10	11636703	11636978	(122160444)	C	MLT1J2	LTR/ERVL-MaLR	(146)	302	13	387209
466	24.4	14.4	1.1	chr10	11636983	11637168	(122160254)	+	HAL1	LINE/L1	1581	1795	(712)	387210
434	32.3	7.0	0.5	chr10	17235427	17235625	(116561797)	C	MIRb	SINE/MIR	(30)	238	26	397009
14	10.7	0.0	5.9	chr10	21527274	21527307	(112270115)	+	G-rich	Low_complexity	1	34	(0)	403873
22	29.0	0.0	0.0	chr10	22003318	22003381	(111794041)	+	(CAG)n	Simple_repeat	1	64	(0)	404666
16	23.4	0.0	2.1	chr10	22003596	22003642	(111793780)	+	(GGCG)n	Simple_repeat	1	47	(0)	404667
673	0.0	0.0	0.0	chr10	22229508	22229582	(111567840)	C	tRNA-Asn-AAC	tRNA	(2)	75	1	404961
18374	13.6	2.7	5.3	chr10	35402831	35406174	(98391248)	C	HERVH-int	LTR/ERV1	(2803)	4910	1658	426545
12	22.1	3.9	3.8	chr10	43397129	43397179	(90400243)	+	G-rich	Low_complexity	1	53	(0)	433410
305	20.0	4.5	4.5	chr10	43397593	43397681	(90399741)	+	L1MC5	LINE/L1	7444	7532	(1772)	433411
16523	11.6	5.2	1.8	chr10	49546818	49548928	(84248494)	C	MER41-int	LTR/ERV1	(2644)	3302	1084	441999
28615	11.8	2.7	1.6	chr10	55814688	55817481	(77979941)	C	MER57-int	LTR/ERV1	(1724)	5813	3012	450652
845	13.9	0.0	0.0	chr10	55817482	55817610	(77979812)	C	MER57-int	LTR/ERV1	(4628)	2909	2781	450652
1100	13.9	0.6	0.0	chr10	55817607	55817778	(77979644)	C	MER57-int	LTR/ERV1	(4908)	2629	2457	450652
435	31.6	8.5	1.8	chr10	56537799	56538017	(77259405)	C	MLT1H	LTR/ERVL-MaLR	(314)	235	1	451585
685	24.1	7.7	3.0	chr10	56538056	56538252	(77259170)	C	LTR16	LTR/ERVL	(219)	219	13	451586
18	16.2	4.7	2.2	chr10	56538256	56538298	(77259124)	+	(AC)n	Simple_repeat	1	45	(0)	451587
8877	11.8	3.1	2.7	chr10	57576329	57577802	(76219620)	C	HUERS-P3b-int	LTR/ERV1	(581)	4793	3073	452899
2229	11.9	0.3	0.0	chr10	62342721	62343014	(71454408)	C	AluSx1	SINE/Alu	(17)	295	1	459923
2750	12.4	5.9	1.6	chr10	62343015	62343589	(71453833)	C	MER41-int	LTR/ERV1	(3262)	3001	2212	459922
15	25.2	4.8	1.5	chr10	63133249	63133311	(70664111)	+	(GGC)n	Simple_repeat	1	66	(0)	461239
16	4.5	0.0	0.0	chr10	63466140	63466162	(70331260)	+	(GGC)n	Simple_repeat	1	23	(0)	461841
194	34.0	2.0	2.0	chr10	77644417	77644518	(56152904)	C	MIRc	SINE/MIR	(87)	181	80	486320
20	25.6	3.8	4.5	chr10	86366085	86366115	(47431307)	+	(GCGGC)n	Simple_repeat	1	48	(62)	499367
12	21.8	2.7	0.0	chr10	86366116	86366152	(47431270)	+	G-rich	Low_complexity	1	38	(0)	499368
20	25.6	3.8	4.5	chr10	86366153	86366190	(47431232)	+	(GCGGC)n	Simple_repeat	49	110	(0)	499367
5299	13.9	4.1	3.0	chr10	87947207	87947609	(45849813)	C	Tigger2b_Pri	DNA/TcMar-Tigger	(99)	969	564	502035
2460	9.0	0.3	0.0	chr10	87947610	87947919	(45849503)	+	AluSc8	SINE/Alu	1	311	(0)	502036
16	27.6	0.0	1.8	chr10	88880176	88880230	(44917192)	+	(CAGAGG)n	Simple_repeat	1	55	(0)	503504
2521	21.4	5.1	1.3	chr10	90365216	90365821	(43431601)	+	Charlie1a	DNA/hAT-Charlie	585	1214	(241)	505740
23733	7.5	0.9	0.2	chr10	90365825	90369622	(43427800)	C	L1PA6	LINE/L1	(11)	6143	2323	505741
709	29.5	7.6	3.3	chr10	91065747	91066135	(42731287)	+	MamRep605	LTR?	314	720	(129)	506741
22	25.9	6.1	2.5	chr10	91220482	91220596	(42576826)	+	(GGC)n	Simple_repeat	1	122	(0)	506997
13	13.0	0.0	9.8	chr10	91220793	91220833	(42576589)	+	(CGG)n	Simple_repeat	1	41	(0)	506998
401	30.2	5.7	4.2	chr10	91221314	91221492	(42575930)	C	MIRc	SINE/MIR	(59)	209	16	506999
28	0.0	0.0	0.0	chr10	93702523	93702548	(40094874)	+	(CCG)n	Simple_repeat	1	26	(0)	511624
22	29.4	1.3	0.0	chr10	94402731	94402759	(39394663)	+	(GGCGGA)n	Simple_repeat	1	73	(0)	512920
23	15.7	0.0	0.0	chr10	94402760	94402802	(39394620)	+	GA-rich	Low_complexity	1	43	(0)	512921
21	6.1	2.9	0.0	chr10	94403609	94403642	(39393780)	+	(CGGGGC)n	Simple_repeat	1	35	(0)	512922
26	3.1	3.0	0.0	chr10	94403651	94403683	(39393739)	+	(GGAGCC)n	Simple_repeat	1	34	(0)	512923
15	17.0	6.2	2.0	chr10	101694328	101694375	(32103047)	+	G-rich	Low_complexity	1	51	(0)	525476
19	4.0	0.0	0.0	chr10	101694598	101694623	(32102799)	+	(CCT)n	Simple_repeat	1	26	(0)	525477
13	28.6	1.8	1.7	chr10	103368202	103368258	(30429164)	+	(CGCCGG)n	Simple_repeat	1	58	(0)	528833
15	20.3	5.9	0.0	chr10	103368447	103368497	(30428925)	+	(CCTCGGCC)n	Simple_repeat	1	54	(0)	528834
829	25.4	8.0	2.3	chr10	110745953	110746381	(23051041)	C	MLT1H	LTR/ERVL-MaLR	(16)	473	5	540083
449	28.1	9.6	1.8	chr10	113586149	113586311	(20211111)	C	MIRb	SINE/MIR	(55)	213	37	544571
2440	7.4	0.7	0.0	chr10	117376732	117377028	(16420394)	+	AluSx3	SINE/Alu	1	299	(12)	550343
2587	13.2	5.0	0.2	chr10	118914335	118914736	(14882686)	C	MSTA	LTR/ERVL-MaLR	(0)	428	7	552831
2113	9.4	0.0	9.1	chr10	119544659	119544987	(14252435)	+	AluSx1	SINE/Alu	1	299	(13)	554097
16	22.7	0.0	0.0	chr10	125896669	125896709	(7900713)	+	G-rich	Low_complexity	1	41	(0)	564165
1379	16.6	1.7	0.4	chr10	131900258	131900492	(1896930)	+	AluJb	SINE/Alu	39	276	(36)	571059
284	20.4	2.3	2.1	chr10	133520013	133520101	(277321)	+	L1ME3D	LINE/L1	5963	6055	(188)	572594
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
255	27.8	11.3	4.3	chr11	4607619	4607757	(130478865)	+	HAL1ME	LINE/L1	2358	2507	(0)	578969
23481	15.0	9.7	11.1	chr11	6688107	6689843	(128396779)	+	HUERS-P1-int	LTR/ERV1	1234	2907	(3356)	581663
2522	10.0	0.0	0.0	chr11	6689844	6690143	(128396479)	+	AluY	SINE/Alu	1	300	(11)	581665
11017	18.5	1.8	9.8	chr11	7943634	7946852	(127139770)	C	L1M2a	LINE/L1	(4198)	2970	6	583280
19	25.9	0.0	1.8	chr11	11841953	11842009	(123244613)	+	(GGC)n	Simple_repeat	1	57	(0)	589842
14	24.0	0.0	0.0	chr11	14891684	14891722	(120194900)	+	(GGAGCA)n	Simple_repeat	1	39	(0)	594637
12	20.8	6.8	0.0	chr11	14891919	14891962	(120194660)	+	(GGCCC)n	Simple_repeat	1	47	(0)	594638
18225	16.5	2.1	2.5	chr11	28136533	28139656	(106946966)	C	LTR25-int	LTR/ERV1	(1626)	5562	2170	615104
3589	17.3	7.1	5.7	chr11	35700154	35701194	(99385428)	C	MER57-int	LTR/ERV1	(3233)	4304	3248	627196
747	10.9	2.8	5.5	chr11	35701182	35701327	(99385295)	C	MER57-int	LTR/ERV1	(4615)	2922	2781	627196
567	16.1	5.9	2.6	chr11	35701324	35701438	(99385184)	C	MER57-int	LTR/ERV1	(4908)	2629	2511	627196
17	7.0	3.3	0.0	chr11	45900083	45900124	(89186498)	+	(CGGCCC)n	Simple_repeat	1	43	(0)	642997
14	12.5	0.0	0.0	chr11	58579456	58579481	(76507141)	+	(GCC)n	Simple_repeat	1	26	(0)	655688
12315	17.7	7.6	5.3	chr11	59401572	59405252	(75681370)	+	MER41-int	LTR/ERV1	1083	5687	(2129)	656692
2124	9.5	3.2	1.0	chr11	61391207	61391252	(73695370)	+	AluSq2	SINE/Alu	1	47	(266)	660081
32	0.0	0.0	0.0	chr11	61391253	61391282	(73695340)	+	(G)n	Simple_repeat	1	30	(0)	660082
2124	9.5	3.2	1.0	chr11	61391283	61391540	(73695082)	+	AluSq2	SINE/Alu	48	311	(2)	660081
16	0.0	0.0	0.0	chr11	64230095	64230111	(70856511)	+	(A)n	Simple_repeat	1	17	(0)	665226
284	27.4	17.1	1.9	chr11	67317104	67317207	(67769415)	C	MIR3	SINE/MIR	(56)	152	30	671397
11623	15.9	1.9	3.4	chr11	72127114	72128542	(62958080)	C	LTR25-int	LTR/ERV1	(1702)	5486	3170	679392
369	25.9	2.8	0.6	chr11	85810838	85810962	(49275660)	C	MIR3	SINE/MIR	(49)	159	42	704417
24	24.2	1.9	5.7	chr11	85811241	85811343	(49275279)	+	(CGCCC)n	Simple_repeat	1	105	(0)	704418
14615	12.4	3.2	2.6	chr11	88889427	88893227	(46193395)	+	HUERS-P3b-int	LTR/ERV1	1276	6946	(472)	709216
13	23.4	0.0	2.4	chr11	93661502	93661543	(41425079)	+	G-rich	Low_complexity	1	42	(0)	715958
26226	2.5	0.4	0.0	chr11	94232525	94238528	(40848094)	C	L1PA2	LINE/L1	(3)	6152	124	716864
18300	3.7	0.3	0.1	chr11	94238529	94241278	(40845344)	C	L1PA4	LINE/L1	(372)	5782	3028	716863
12	27.7	0.0	0.0	chr11	95789478	95789516	(39297106)	+	(TCC)n	Simple_repeat	1	39	(0)	719160
19	12.2	2.7	0.0	chr11	96389853	96389889	(38696733)	+	(CGCCTC)n	Simple_repeat	1	38	(0)	720073
1319	20.7	15.3	1.3	chr11	100874009	100874400	(34212222)	C	MSTB2	LTR/ERVL-MaLR	(0)	457	1	725645
8242	17.9	2.9	0.4	chr11	102476701	102478089	(32608533)	+	MER34-int	LTR/ERV1	1351	2775	(5432)	727996
422	35.4	2.3	0.5	chr11	109352664	109352876	(25733746)	+	MLT1N2	LTR/ERVL-MaLR	331	547	(15)	738221
839	35.2	7.9	2.8	chr11	109353023	109353502	(25733120)	+	L2a	LINE/L2	2608	3101	(274)	738222
5690	20.9	5.0	2.6	chr11	116664583	116666720	(18419902)	+	L1M3f	LINE/L1	1251	3450	(4115)	749729
24084	7.0	1.1	0.7	chr11	116666719	116672862	(18413760)	+	L1PA6	LINE/L1	174	6325	(2)	749730
251	33.1	3.0	4.4	chr11	118014161	118014296	(17072326)	+	L2c	LINE/L2	3252	3385	(2)	752145
37	7.0	0.0	0.0	chr11	118918264	118918308	(16168314)	+	(TG)n	Simple_repeat	1	45	(0)	753860
43	0.0	0.0	0.0	chr11	126050496	126050532	(9036090)	+	(AC)n	Simple_repeat	1	37	(0)	765422
1633	11.8	9.6	3.5	chr11	126845771	126846536	(8240086)	+	MER41-int	LTR/ERV1	3409	3671	(3866)	766727
183	27.2	2.1	8.9	chr11	129248524	129248624	(5837998)	C	L3b	LINE/CR1	(372)	4860	4767	770035
233	20.3	6.8	1.4	chr11	129248625	129248694	(5837928)	+	MIRb	SINE/MIR	195	268	(0)	770036
385	29.9	4.9	0.0	chr11	129248858	129248954	(5837668)	C	L2b	LINE/L2	(20)	3355	3254	770037
280	33.6	6.1	0.0	chr12	2255710	2255816	(131019493)	C	L2b	LINE/L2	(6)	3369	3256	781930
3151	11.7	0.7	0.7	chr12	6423166	6423628	(126851681)	C	L1PB4	LINE/L1	(0)	6156	5694	788690
29469	10.3	3.7	1.9	chr12	10656655	10660474	(122614835)	+	MER41-int	LTR/ERV1	2105	5944	(2)	795487
332	23.2	16.8	0.5	chr12	12975584	12975757	(120299552)	+	MIRb	SINE/MIR	37	239	(29)	799181
241	31.9	0.8	0.8	chr12	17097512	17097631	(116177678)	C	MLT1J-int	LTR/ERVL-MaLR	(653)	734	615	805100
21199	10.6	1.3	1.0	chr12	18890261	18896672	(114378637)	C	L1PA8A	LINE/L1	(1)	6445	4	807220
27278	12.2	3.2	1.9	chr12	24856758	24859339	(108415970)	+	MER41-int	LTR/ERV1	1262	3909	(2037)	815524
19	0.0	0.0	0.0	chr12	25276636	25276659	(107998650)	+	(AAC)n	Simple_repeat	1	24	(0)	816249
290	26.7	5.8	4.4	chr12	26119446	26119582	(107155727)	+	MIR3	SINE/MIR	45	183	(25)	817534
17269	14.3	3.7	6.3	chr12	42614633	42618368	(90656941)	C	LTR49-int	LTR/ERV1	(2)	6329	2696	836941
551	16.4	2.5	0.0	chr12	47116717	47116832	(86158477)	+	MER45B	DNA/hAT-Tip100	837	955	(85)	843133
723	18.3	0.7	0.7	chr12	47116837	47116979	(86158330)	C	L1MB8	LINE/L1	(6)	6172	6030	843134
488	20.6	0.0	0.0	chr12	47116986	47117058	(86158251)	+	AluJr	SINE/Alu	131	203	(109)	843135
533	21.4	0.0	0.0	chr12	47117059	47117147	(86158162)	C	AluJb	SINE/Alu	(223)	89	1	843136
430	8.3	0.0	0.0	chr12	47117148	47117207	(86158102)	C	L1MB8	LINE/L1	(305)	5873	5814	843137
7941	4.6	0.4	0.2	chr12	47117203	47118979	(86156330)	C	L1PA5	LINE/L1	(5)	6149	4367	843138
13	30.4	0.0	0.0	chr12	49636768	49636815	(83638494)	+	(GGAGCG)n	Simple_repeat	1	48	(0)	847535
12	24.4	0.0	0.0	chr12	49637170	49637203	(83638106)	+	(TGG)n	Simple_repeat	1	34	(0)	847536
1703	11.7	7.4	5.9	chr12	50763351	50763657	(82511652)	+	AluJo	SINE/Alu	1	312	(0)	849955
23	8.8	0.0	0.0	chr12	50764042	50764077	(82511232)	+	(GCCCCC)n	Simple_repeat	1	36	(0)	849956
11	27.2	2.0	2.0	chr12	53493221	53493270	(79782039)	+	G-rich	Low_complexity	1	51	(0)	854861
11	18.4	11.3	2.5	chr12	53493443	53493513	(79781796)	+	A-rich	Low_complexity	1	79	(0)	854862
20	22.0	3.0	2.9	chr12	54054256	54054322	(79220987)	+	(CCAG)n	Simple_repeat	1	69	(0)	855785
8131	20.1	3.5	7.5	chr12	56803709	56805538	(76469771)	C	MER52A	LTR/ERV1	(0)	1755	1	860293
1446	9.6	1.0	0.5	chr12	56805539	56805737	(76469572)	C	MER52-int	LTR/ERV1	(0)	7091	6892	860293
2268	15.1	3.0	2.2	chr12	56904305	56904759	(76370550)	+	HUERS-P1-int	LTR/ERV1	1977	2381	(3882)	860447
6265	7.1	0.7	1.6	chr12	56904760	56904938	(76370371)	+	L1PA8A	LINE/L1	5309	5481	(650)	860448
7059	17.7	9.8	7.2	chr12	57997108	57998933	(75276376)	C	MER52D	LTR/ERV1	(1)	2122	269	862172
2556	18.1	4.6	2.0	chr12	57998938	57999910	(75275399)	C	L1MB3	LINE/L1	(3360)	3022	2018	862169
385	33.9	4.1	8.8	chr12	58757856	58758341	(74516968)	C	L2c	LINE/L2	(8)	3379	2918	863224
253	28.5	4.6	3.1	chr12	63779456	63779568	(69495741)	C	L2a	LINE/L2	(17)	3409	3247	869919
16	0.0	0.0	0.0	chr12	67926037	67926054	(65349255)	+	(T)n	Simple_repeat	1	18	(0)	876610
232	19.8	15.8	0.0	chr12	69470052	69470173	(63805136)	+	MIRc	SINE/MIR	3	159	(49)	879353
13	16.7	4.8	2.3	chr12	69470606	69470647	(63804662)	+	(GCTCCGG)n	Simple_repeat	1	44	(0)	879354
20816	11.5	1.8	2.5	chr12	70495058	70497655	(62777654)	C	L1PA7	LINE/L1	(3831)	2630	5	880966
1360	15.7	1.5	0.5	chr12	70497687	70498055	(62777254)	C	PABL_A-int	LTR/ERV1	(3276)	2670	2255	880965
2185	12.3	6.0	2.0	chr12	71058193	71058541	(62216768)	+	THE1B	LTR/ERVL-MaLR	1	364	(0)	881815
1826	21.6	6.2	7.1	chr12	71058542	71058815	(62216494)	+	L1ME3A	LINE/L1	5448	5720	(453)	881814
2443	8.6	0.0	1.0	chr12	71058816	71059129	(62216180)	+	AluY	SINE/Alu	1	311	(0)	881816
6083	18.9	4.2	4.3	chr12	72250955	72252964	(61022345)	C	L1MD2	LINE/L1	(9)	6350	4340	883591
657	35.2	2.0	1.2	chr12	78396434	78396683	(54878626)	C	MLT1J2	LTR/ERVL-MaLR	(166)	282	31	892091
363	18.3	5.7	1.2	chr12	79935970	79936052	(53339257)	C	L2a	LINE/L2	(4)	3422	3336	894282
14	20.4	3.7	3.6	chr12	92146392	92146445	(41128864)	+	(GTGCG)n	Simple_repeat	1	56	(0)	911016
24233	11.7	3.0	5.3	chr12	93250873	93253674	(40021635)	C	HUERS-P1-int	LTR/ERV1	(2326)	3937	1227	913031
258	34.3	9.9	0.0	chr12	101783396	101783532	(31491777)	+	L3	LINE/CR1	3799	3950	(149)	927919
1956	15.2	0.7	1.0	chr12	101783721	101784017	(31491292)	C	AluJb	SINE/Alu	(16)	296	1	927922
26	0.0	0.0	0.0	chr12	105523222	105523246	(27752063)	+	(GAGG)n	Simple_repeat	1	25	(0)	934538
225	22.0	3.9	0.0	chr12	105523597	105523646	(27751663)	C	L2c	LINE/L2	(3)	3384	3333	934539
653	32.3	5.6	3.3	chr12	106882184	106882426	(26392883)	C	MIRb	SINE/MIR	(7)	261	13	937000
17	4.3	0.0	0.0	chr12	106882476	106882499	(26392810)	+	(TTA)n	Simple_repeat	1	24	(0)	937001
561	22.6	7.7	4.3	chr12	106882525	106882686	(26392623)	C	MIRc	SINE/MIR	(96)	172	5	937002
202	23.1	0.0	5.5	chr12	106882793	106882847	(26392462)	C	L2a	LINE/L2	(86)	3340	3289	936998
15	24.7	3.8	0.0	chr12	111599329	111599381	(21675928)	+	G-rich	Low_complexity	1	55	(0)	947449
14	13.2	2.9	2.8	chr12	111599379	111599413	(21675896)	+	(CCGCC)n	Simple_repeat	1	36	(0)	947450
475	33.3	4.5	5.6	chr12	113912442	113912711	(19362598)	+	MIRb	SINE/MIR	2	268	(0)	952745
785	19.3	14.1	4.7	chr12	115597202	115597413	(17677896)	C	MLT1H	LTR/ERVL-MaLR	(7)	542	308	956355
17	15.3	0.0	0.0	chr12	115597457	115597485	(17677824)	+	A-rich	Low_complexity	1	29	(0)	956356
184	36.7	5.3	0.0	chr12	120642841	120642930	(12632379)	C	L2b	LINE/L2	(36)	3339	3245	967578
16	0.0	0.0	0.0	chr12	120642996	120643012	(12632297)	+	(A)n	Simple_repeat	1	17	(0)	967579
2138	13.1	0.0	0.0	chr12	121500819	121501109	(11774200)	+	AluSz	SINE/Alu	1	291	(21)	969542
29	0.0	3.2	0.0	chr12	123584561	123584591	(9690718)	+	(GCG)n	Simple_repeat	1	32	(0)	974479
13	12.7	0.0	0.0	chr12	123584949	123584974	(9690335)	+	(CCGCC)n	Simple_repeat	1	26	(0)	974480
2465	8.1	0.7	0.0	chr12	123615703	123616010	(9659299)	+	AluY	SINE/Alu	1	310	(1)	974555
16	10.0	6.1	0.0	chr12	124566212	124566244	(8709065)	+	GA-rich	Low_complexity	1	35	(0)	976290
12	12.5	0.0	3.6	chr12	124566428	124566455	(8708854)	+	(CCCG)n	Simple_repeat	1	28	(0)	976291
497	29.1	11.3	1.6	chr12	124746375	124746566	(8528743)	+	MIR	SINE/MIR	50	262	(0)	976734
393	32.6	0.0	2.1	chr12	124869220	124869363	(8405946)	+	MIR	SINE/MIR	85	225	(37)	977009
2118	12.2	0.3	1.3	chr12	124869657	124869822	(8405487)	C	AluSz	SINE/Alu	(13)	299	136	977010
2419	5.8	0.0	0.3	chr12	132686453	132686747	(588562)	+	AluSx1	SINE/Alu	1	294	(18)	989771
1353	17.7	1.3	7.3	chr12	132686748	132686870	(588439)	C	AluJb	SINE/Alu	(196)	116	1	989770
13	28.4	3.3	1.6	chr12	132687508	132687568	(587741)	+	(GGCGC)n	Simple_repeat	1	63	(0)	989772
14	22.0	2.4	0.0	chr12	132687578	132687619	(587690)	+	(GCGCTCC)n	Simple_repeat	1	43	(0)	989773
506	27.5	6.3	1.3	chr12	132985913	132986063	(289246)	C	L1MB7	LINE/L1	(3665)	2550	2392	990290
3527	17.6	10.9	5.4	chr13	23959795	23961130	(90403198)	+	LTR25-int	LTR/ERV1	3403	4901	(2287)	999575
6108	8.8	2.5	1.8	chr13	27125487	27126431	(87237897)	+	L1P2	LINE/L1	5	956	(5228)	1004359
509	32.2	10.5	2.5	chr13	36163093	36163328	(78201000)	C	MIRb	SINE/MIR	(8)	260	4	1018151
546	6.6	6.2	6.2	chr13	37562465	37562561	(76801767)	+	L1PA12	LINE/L1	6070	6166	(2)	1020170
17295	15.2	4.4	3.7	chr13	40302164	40303986	(74060342)	C	HERV35I-int	LTR/ERV1	(2879)	4039	2302	1023888
346	21.9	0.0	0.0	chr13	41060737	41060809	(73303519)	C	tRNA-Glu-GAG_	tRNA	(2)	73	1	1025161
13	10.4	6.2	0.0	chr13	41060893	41060914	(73303414)	+	(CTG)n	Simple_repeat	1	24	(0)	1025162
35	0.0	0.0	0.0	chr13	41060915	41060946	(73303382)	+	(GCC)n	Simple_repeat	1	32	(0)	1025163
28874	9.4	3.0	3.1	chr13	48067799	48071465	(66292863)	+	MER61-int	LTR/ERV1	958	4582	(635)	1036201
725	24.5	3.2	11.3	chr13	51027503	51027741	(63336587)	+	MER20	DNA/hAT-Charlie	1	219	(0)	1040966
556	11.5	10.3	0.0	chr13	51027765	51027851	(63336477)	C	5S	rRNA	(23)	98	2	1040967
1661	9.8	3.1	0.8	chr13	51027852	51028099	(63336229)	+	L1PA8	LINE/L1	5918	6171	(1)	1040968
13	22.1	4.1	2.0	chr13	52652663	52652711	(61711617)	+	G-rich	Low_complexity	1	51	(0)	1043445
4886	12.8	6.9	2.5	chr13	61114320	61115186	(53249142)	+	MER57-int	LTR/ERV1	2777	3684	(3853)	1054408
6961	17.9	8.6	7.7	chr13	61765292	61767029	(52597299)	C	MER52A	LTR/ERV1	(0)	1755	1	1055165
5481	15.9	10.7	0.3	chr13	61902819	61903829	(52460499)	+	LTR28C	LTR/ERV1	1	1129	(0)	1055341
9733	12.1	4.0	3.9	chr13	62050855	62052427	(52311901)	+	THE1B-int	LTR/ERVL-MaLR	6	1580	(0)	1055535
3839	22.3	5.3	3.7	chr13	62105461	62106605	(52257723)	+	MER52A	LTR/ERV1	912	2123	(0)	1055587
4315	20.8	5.4	6.6	chr13	62394385	62395296	(51969032)	+	LTR27E	LTR/ERV1	151	1076	(1)	1055953
2085	14.4	0.0	0.0	chr13	62429316	62429607	(51934721)	C	AluSz	SINE/Alu	(18)	294	3	1055993
1052	18.2	1.5	0.0	chr13	62429702	62429904	(51934424)	C	MER2	DNA/TcMar-Tigger	(0)	345	140	1055994
17281	14.2	4.1	6.2	chr13	62788191	62791530	(51572798)	C	HUERS-P1-int	LTR/ERV1	(2996)	3267	1	1056439
3415	20.2	1.1	0.2	chr13	63396578	63397191	(50967137)	+	MER52A	LTR/ERV1	1136	1755	(0)	1057216
4285	20.3	0.7	2.2	chr13	64074922	64075752	(50288576)	C	MER52A	LTR/ERV1	(0)	1755	937	1058100
1093	24.4	2.5	6.3	chr13	64075760	64076092	(50288236)	C	MER52A	LTR/ERV1	(1435)	320	1	1058100
8997	12.7	6.6	4.0	chr13	64372896	64374433	(49989895)	C	THE1C-int	LTR/ERVL-MaLR	(0)	1580	1	1058434
14283	13.2	1.8	2.1	chr13	64739025	64741320	(49623008)	+	MER57-int	LTR/ERV1	1682	3968	(3569)	1058928
22380	9.7	1.7	1.2	chr13	65103914	65109618	(49254710)	C	L1PA7	LINE/L1	(4)	6465	702	1059346
3363	19.2	2.5	2.1	chr13	65109625	65110384	(49253944)	C	L1MC	LINE/L1	(831)	5315	4553	1059347
5382	10.3	0.4	0.8	chr13	65748088	65748870	(48615458)	C	LTR17	LTR/ERV1	(0)	780	1	1060171
534	36.9	8.1	3.7	chr13	66525004	66525529	(47838799)	+	L2	LINE/L2	1257	1801	(1618)	1061148
3614	17.5	17.8	5.7	chr13	67415684	67416618	(46947710)	+	LTR27E	LTR/ERV1	1	1073	(4)	1062246
490	28.1	11.6	4.8	chr13	67416619	67416874	(46947454)	+	L1MEi	LINE/L1	1108	1390	(822)	1062245
2934	33.6	6.6	7.3	chr13	67934496	67936910	(46427418)	+	MER110-int	LTR/ERV1	1386	3712	(3089)	1062891
2174	19.1	13.7	2.8	chr13	70986790	70987352	(43376976)	+	LTR27C	LTR/ERV1	1	767	(0)	1066872
8681	14.8	5.9	4.0	chr13	71061777	71063325	(43301003)	C	THE1C-int	LTR/ERVL-MaLR	(0)	1580	1	1066969
1285	24.8	15.0	6.7	chr13	71493050	71493559	(42870769)	+	MLT1F2	LTR/ERVL-MaLR	1	560	(0)	1067516
2303	12.5	0.0	0.0	chr13	71633961	71634272	(42730056)	C	AluSx1	SINE/Alu	(0)	312	1	1067691
246	31.1	3.8	7.3	chr13	71634364	71634609	(42729719)	+	L2b	LINE/L2	2923	3159	(216)	1067692
297	25.4	3.4	3.8	chr13	71634739	71634856	(42729472)	C	MER5A	DNA/hAT-Charlie	(2)	176	61	1067693
326	28.6	5.0	2.9	chr13	74155778	74155914	(40208414)	C	MamGypLTR2c	LTR/Gypsy	(210)	858	719	1071588
494	33.1	8.1	3.6	chr13	74156052	74156414	(40207914)	C	MamGypLTR2c	LTR/Gypsy	(616)	452	72	1071588
13	10.8	3.1	3.0	chr13	74575874	74575905	(39788423)	+	(CCGGC)n	Simple_repeat	1	33	(0)	1072129
4087	15.3	1.5	1.7	chr13	75186264	75186975	(39177353)	C	MER50	LTR/ERV1	(23)	711	1	1072950
16	19.6	0.0	0.0	chr13	75357986	75358015	(39006313)	+	(T)n	Simple_repeat	1	30	(0)	1073197
211	31.7	8.4	7.2	chr13	75358184	75358336	(39005992)	C	L2b	LINE/L2	(2)	3373	3219	1073198
35	5.4	0.0	0.0	chr13	75480868	75480906	(38883422)	+	(CA)n	Simple_repeat	1	39	(0)	1073408
12	25.8	1.9	3.6	chr13	76992139	76992192	(37372136)	+	(GGCGCG)n	Simple_repeat	1	55	(0)	1075557
8340	21.4	3.7	3.6	chr13	80937334	80939990	(33424338)	C	L1M2	LINE/L1	(3052)	3796	1144	1080921
333	24.6	0.0	0.0	chr13	80939990	80940058	(33424270)	C	L1M2	LINE/L1	(6614)	235	167	1080921
2139	26.2	2.3	1.2	chr13	80940061	80940743	(33423585)	C	L1MC3	LINE/L1	(3226)	3095	2405	1080915
2055	15.1	1.0	0.0	chr13	81113922	81114225	(33250103)	C	AluSz	SINE/Alu	(2)	310	4	1081141
1728	16.1	1.7	2.4	chr13	81114239	81114529	(33249799)	C	AluJb	SINE/Alu	(23)	289	1	1081142
2886	20.5	1.6	2.6	chr13	81533988	81534637	(32829691)	+	L1MA7	LINE/L1	4699	5341	(782)	1081682
20681	15.0	4.8	3.3	chr13	82289500	82291568	(32072760)	C	HERV35I-int	LTR/ERV1	(2028)	4890	2794	1082583
1824	27.4	4.3	4.2	chr13	82354282	82355248	(32009080)	C	L1MC3	LINE/L1	(4865)	1886	845	1082649
1855	17.8	0.0	0.3	chr13	82355285	82355582	(32008746)	C	AluJb	SINE/Alu	(14)	298	2	1082657
2161	14.3	0.9	1.2	chr13	83161087	83161426	(31202902)	+	MER1B	DNA/hAT-Charlie	1	339	(0)	1083672
683	32.5	8.7	2.3	chr13	87124037	87124421	(27239907)	C	MamRTE1	LINE/RTE-BovB	(100)	3712	3301	1088601
6405	21.8	10.0	4.5	chr13	89783184	89784835	(24579493)	C	MER52A	LTR/ERV1	(0)	1755	3	1092087
4087	9.8	0.2	0.0	chr13	89976880	89977432	(24386896)	C	MER41A	LTR/ERV1	(0)	554	1	1092345
3293	22.2	7.2	8.6	chr13	98040212	98040347	(16323981)	C	L1MD2	LINE/L1	(84)	6275	6133	1103937
6598	18.2	3.8	1.1	chr13	99508924	99510380	(14853948)	C	MSTA-int	LTR/ERVL-MaLR	(17)	1563	1	1106372
30730	10.2	3.1	1.7	chr13	112383289	112388628	(1975700)	C	HUERS-P1-int	LTR/ERV1	(529)	5417	1	1123443
2531	22.5	11.9	1.0	chr13	113645822	113646820	(717508)	+	L1MB3	LINE/L1	5287	6420	(5)	1124930
12	24.3	0.0	4.3	chr13	114234973	114235019	(129309)	+	G-rich	Low_complexity	1	47	(0)	1125385
2176	4.0	0.0	0.0	chr14	19668195	19668466	(87375252)	+	L1PA6	LINE/L1	5515	5786	(368)	1127019
16	28.9	0.0	3.2	chr14	19668474	19668535	(87375183)	+	(GCG)n	Simple_repeat	1	62	(0)	1127020
14031	12.1	5.1	2.1	chr14	25645516	25649887	(81393831)	C	PABL_A-int	LTR/ERV1	(4)	5942	1	1135818
4603	16.6	4.7	3.3	chr14	29729870	29731142	(77312576)	+	L1MA8	LINE/L1	4968	6285	(6)	1140907
17	6.8	6.5	0.0	chr14	31207671	31207701	(75836017)	+	(GGC)n	Simple_repeat	1	33	(0)	1143146
205	21.9	1.5	9.9	chr14	31208260	31208330	(75835388)	C	MIRb	SINE/MIR	(82)	186	122	1143147
5930	23.2	9.0	2.3	chr14	44938670	44939938	(62103780)	C	MSTD-int	LTR/ERVL-MaLR	(350)	1385	6	1162367
18424	15.3	3.5	1.5	chr14	45789563	45793102	(61250616)	+	LTR25-int	LTR/ERV1	858	7185	(3)	1163569
2310	8.5	1.3	0.0	chr14	49585088	49585382	(57458336)	+	AluSg	SINE/Alu	1	299	(11)	1168207
1108	13.5	0.0	1.8	chr14	49585433	49585602	(57458116)	+	AluJb	SINE/Alu	136	302	(10)	1168208
3586	16.1	7.6	2.3	chr14	50313585	50314105	(56729613)	C	L1MD2	LINE/L1	(22)	6337	5773	1169753
39	22.3	3.6	4.2	chr14	53956783	53956921	(53086797)	+	(CTCC)n	Simple_repeat	1	144	(0)	1175257
4501	13.7	4.5	0.7	chr14	66789377	66790091	(40253627)	C	MER57-int	LTR/ERV1	(3997)	3540	2798	1195055
3280	17.7	4.8	4.7	chr14	70444440	70446190	(36597528)	C	LTR25-int	LTR/ERV1	(299)	4918	2171	1201211
23	21.1	1.3	5.1	chr14	70907480	70907557	(36136161)	+	(GGCGGC)n	Simple_repeat	1	79	(0)	1201960
2205	12.5	0.3	0.6	chr14	73604475	73604785	(33438933)	C	AluSz	SINE/Alu	(1)	311	2	1206660
4758	15.4	8.4	8.6	chr14	73604786	73605278	(33438440)	C	LTR25-int	LTR/ERV1	(3012)	4176	3752	1206653
13	19.4	4.8	8.1	chr14	74882086	74882168	(32161550)	+	(GGCCG)n	Simple_repeat	1	87	(0)	1209340
3815	18.9	1.6	3.5	chr14	82162333	82163040	(24880678)	+	MER41-int	LTR/ERV1	2853	3556	(3362)	1221734
12388	10.9	2.5	1.7	chr14	90473385	90476737	(16566981)	+	MER41-int	LTR/ERV1	1276	5946	(0)	1233992
24833	14.0	5.3	3.0	chr14	93555704	93556937	(13486781)	C	HERV35I-int	LTR/ERV1	(3387)	3531	2280	1239650
13	16.9	3.0	0.0	chr14	94081174	94081206	(12962512)	+	(GCAGCT)n	Simple_repeat	1	34	(0)	1240581
1071	30.5	9.0	3.1	chr14	94171976	94173393	(12870325)	+	L1ME3Cz	LINE/L1	4673	6185	(9)	1240751
22896	12.0	4.1	2.3	chr14	95277927	95279502	(11764216)	+	MER41-int	LTR/ERV1	1617	3230	(2716)	1242712
31	0.0	0.0	0.0	chr14	99420948	99420976	(7622742)	+	(G)n	Simple_repeat	1	29	(0)	1250017
15	17.6	0.0	4.8	chr14	99604696	99604737	(7438981)	+	(CCCCGT)n	Simple_repeat	1	42	(0)	1250259
313	31.6	2.1	0.0	chr14	100007522	100007616	(7036102)	C	Charlie17a	DNA/hAT-Charlie	(19)	198	102	1251004
43	10.8	1.4	0.0	chr14	100007765	100007834	(7035884)	+	(AGAG)n	Simple_repeat	1	71	(0)	1251005
1052	17.9	5.5	3.3	chr14	100007885	100008098	(7035620)	C	MER20	DNA/hAT-Charlie	(0)	219	1	1251006
366	32.6	13.3	0.9	chr14	100486864	100487080	(6556638)	C	L1ME4a	LINE/L1	(7)	6117	5870	1251940
13403	11.1	3.7	2.2	chr14	102858453	102860449	(4183269)	C	MER41-int	LTR/ERV1	(1455)	4491	2781	1255831
2251	6.7	4.8	1.1	chr15	20340242	20344102	(81647087)	+	(AGCCAGCCA)n	Simple_repeat	1	4048	(0)	1263201
9576	20.3	12.2	10.3	chr15	22395812	22396866	(79594323)	C	HERV35I-int	LTR/ERV1	(3399)	3519	2431	1265647
9367	19.2	5.2	8.4	chr15	24513896	24517177	(77474012)	C	HERV35I-int	LTR/ERV1	(1822)	5096	1897	1268919
278	34.1	8.7	5.0	chr15	36122644	36122921	(65868268)	C	L2b	LINE/L2	(19)	3356	3068	1285258
290	26.6	21.7	0.9	chr15	40161496	40161689	(61829500)	+	MIRb	SINE/MIR	22	264	(4)	1290779
282	28.4	4.3	0.0	chr15	42057696	42057783	(59933406)	C	MLT1K	LTR/ERVL-MaLR	(0)	595	504	1294482
13	19.6	0.0	0.0	chr15	43185248	43185277	(58805912)	+	G-rich	Low_complexity	1	30	(0)	1296537
33	26.8	4.6	0.7	chr15	43185629	43185759	(58805430)	+	G-rich	Low_complexity	1	137	(0)	1296538
22131	13.2	5.4	6.5	chr15	44877922	44882678	(57108511)	C	HUERS-P1-int	LTR/ERV1	(898)	4117	1	1299694
18045	14.6	3.4	4.7	chr15	45004986	45008362	(56982827)	+	HUERS-P1-int	LTR/ERV1	1	3332	(2931)	1299937
458	23.0	3.1	9.7	chr15	45457774	45458016	(56533173)	+	L1ME3A	LINE/L1	5178	5399	(747)	1300698
4050	14.5	4.0	0.6	chr15	47045887	47046565	(54944624)	C	MER57-int	LTR/ERV1	(3823)	3714	3012	1302859
20	16.2	1.9	3.8	chr15	49169870	49169876	(52821313)	+	(AACA)n	Simple_repeat	1	49	(0)	1305903
12	23.9	0.0	2.4	chr15	49169877	49169917	(52821272)	+	A-rich	Low_complexity	1	41	(0)	1305904
1064	13.6	0.0	0.0	chr15	50666896	50667049	(51324140)	+	MER41B	LTR/ERV1	481	634	(0)	1308251
636	11.5	2.2	0.0	chr15	50667050	50667136	(51324053)	+	MER41-int	LTR/ERV1	1	89	(5857)	1308251
565	15.4	0.0	1.1	chr15	50667131	50667222	(51323967)	+	MER41-int	LTR/ERV1	2414	2504	(3442)	1308251
1333	10.8	8.4	0.3	chr15	50667216	50667423	(51323766)	+	MER41-int	LTR/ERV1	2631	2848	(3098)	1308251
2027	11.2	0.4	0.0	chr15	55424592	55424859	(46566330)	C	AluSg	SINE/Alu	(40)	270	2	1315521
2262	9.5	0.3	1.0	chr15	55424870	55425164	(46566025)	C	AluSp	SINE/Alu	(20)	293	1	1315522
1539	17.0	1.5	1.1	chr15	63158186	63158450	(38832739)	C	AluJo	SINE/Alu	(27)	285	20	1328069
12	17.2	2.2	6.5	chr15	65792134	65792178	(36199011)	+	(CCCG)n	Simple_repeat	1	46	(0)	1333344
13	21.9	0.0	2.6	chr15	65792225	65792263	(36198926)	+	(GCCTCT)n	Simple_repeat	1	39	(0)	1333345
394	32.9	9.9	4.4	chr15	65837489	65837943	(36153246)	+	L2	LINE/L2	1633	2115	(1304)	1333448
14	16.1	5.5	7.8	chr15	71115714	71115786	(30875403)	+	(CGCTCC)n	Simple_repeat	1	77	(0)	1343234
770	21.7	3.7	1.9	chr15	71264889	71265048	(30726141)	+	MLT1A	LTR/ERVL-MaLR	1	163	(211)	1343467
21080	9.4	1.0	3.2	chr15	71265153	71270472	(30720717)	+	L1P3	LINE/L1	1	5325	(1136)	1343468
23	19.7	0.0	0.0	chr15	72229912	72229954	(29761235)	+	A-rich	Low_complexity	1	43	(0)	1345106
18	28.7	0.0	2.8	chr15	72230283	72230354	(29760835)	+	(CCCGCCG)n	Simple_repeat	1	69	(0)	1345107
12	17.0	2.2	6.5	chr15	72230804	72230848	(29760341)	+	(GAGGATG)n	Simple_repeat	1	46	(0)	1345108
592	32.6	6.4	2.9	chr15	72865108	72865483	(29125706)	+	L2	LINE/L2	2444	2833	(586)	1346228
280	26.4	0.0	0.0	chr15	72865730	72865801	(29125388)	+	L2	LINE/L2	3009	3080	(339)	1346228
300	32.5	16.5	5.8	chr15	75456289	75456687	(26534502)	C	L2c	LINE/L2	(11)	3364	2945	1350825
711	17.6	2.2	0.8	chr15	75801957	75802088	(26189101)	+	MER94	DNA/hAT-Blackjack	1	134	(0)	1351529
13	22.0	2.3	2.2	chr15	78709214	78709257	(23281932)	+	A-rich	Low_complexity	1	45	(0)	1356452
518	21.6	6.7	0.0	chr15	78709271	78709395	(23281794)	+	MER94	DNA/hAT-Blackjack	1	134	(0)	1356453
266	12.9	25.5	0.0	chr15	80906273	80906342	(21084847)	C	MLT1J	LTR/ERVL-MaLR	(283)	161	68	1360322
563	20.4	4.3	1.5	chr15	80906310	80906443	(21084746)	C	MLT1J	LTR/ERVL-MaLR	(372)	140	3	1360322
190	17.4	9.8	0.0	chr15	80906494	80906539	(21084650)	+	MIR3	SINE/MIR	95	145	(63)	1360323
20	24.8	2.7	2.6	chr15	82810046	82810077	(19181112)	+	(GGCTGG)n	Simple_repeat	1	60	(17)	1363497
13	6.5	5.6	5.3	chr15	82810078	82810113	(19181076)	+	G-rich	Low_complexity	1	38	(0)	1363498
20	24.8	2.7	2.6	chr15	82810114	82810120	(19181069)	+	(GGCTGG)n	Simple_repeat	61	77	(0)	1363497
594	20.8	3.0	3.0	chr15	84588332	84588465	(17402724)	C	MER94	DNA/hAT-Blackjack	(0)	134	1	1366227
20065	13.0	6.2	2.1	chr15	85447378	85454630	(16536559)	C	L1PA14	LINE/L1	(9)	8147	2	1367830
236	27.0	7.5	5.1	chr15	89430358	89430552	(12560637)	C	L1ME4b	LINE/L1	(37)	855	656	1374189
197	28.3	4.2	12.4	chr15	89430720	89430824	(12560365)	+	L2c	LINE/L2	3275	3370	(17)	1374190
12	16.6	2.6	5.0	chr15	89430904	89430942	(12560247)	+	G-rich	Low_complexity	1	40	(0)	1374191
18	4.7	0.0	0.0	chr15	92900204	92900225	(9090964)	+	(TC)n	Simple_repeat	1	22	(0)	1380713
234	28.8	4.3	0.0	chr15	96596082	96596147	(5395042)	C	L2c	LINE/L2	(3)	3384	3316	1386098
15	15.3	0.0	5.0	chr15	101723942	101723981	(267208)	+	(GCAGG)n	Simple_repeat	1	40	(0)	1393180
17	3.6	0.0	6.2	chr15	101724553	101724584	(266605)	+	(GGGGC)n	Simple_repeat	1	32	(0)	1393181
4950	20.1	5.8	7.1	chr15	101856428	101857158	(134031)	+	MER101-int	LTR/ERV1	1625	2757	(3882)	1393366
1979	16.3	10.6	0.3	chr15	101857159	101857540	(133649)	+	MSTB	LTR/ERVL-MaLR	1	426	(0)	1393369
4950	20.8	4.5	3.2	chr15	101857541	101858050	(133139)	+	MER101-int	LTR/ERV1	2758	3266	(3373)	1393366
293	19.4	4.0	0.0	chr16	1025186	1025257	(89313088)	C	MER2	DNA/TcMar-Tigger	(3)	342	268	1395420
667	18.2	4.0	2.7	chr16	3172584	3172730	(87165615)	+	MER33	DNA/hAT-Charlie	1	149	(175)	1398651
760	31.3	11.1	3.4	chr16	25388561	25388940	(64949405)	C	LTR16	LTR/ERVL	(25)	413	1	1446906
23	10.9	0.0	2.4	chr16	29691994	29692035	(60646310)	+	(GTGTGC)n	Simple_repeat	1	42	(0)	1456321
37	0.0	2.6	0.0	chr16	29692249	29692286	(60646059)	+	(TTAT)n	Simple_repeat	1	39	(0)	1456322
2181	4.3	5.4	0.3	chr16	29692299	29692580	(60645765)	+	AluY	SINE/Alu	1	297	(14)	1456323
376	16.7	0.0	0.3	chr16	30481800	30481875	(59856470)	+	FLAM_C	SINE/Alu	13	87	(233)	1458158
380	23.9	7.4	6.1	chr16	30813968	30814115	(59524230)	C	MIR3	SINE/MIR	(23)	185	33	1458924
23	9.1	0.0	0.0	chr16	30814728	30814763	(59523582)	+	(TTCC)n	Simple_repeat	1	36	(0)	1458925
1619	16.4	7.4	0.0	chr16	30814766	30815052	(59523293)	C	AluSg	SINE/Alu	(0)	310	1	1458926
2357	5.0	5.4	2.5	chr16	33335927	33340033	(56998312)	+	(TGGCTTGGC)n	Simple_repeat	1	4327	(0)	1462585
888	6.7	4.2	0.7	chr16	33340034	33340155	(56998190)	C	LTR13A	LTR/ERVK	(840)	126	1	1462584
330	24.4	1.2	2.4	chr16	34071698	34071779	(56266566)	+	AluJb	SINE/Alu	208	288	(24)	1463578
12182	19.3	12.0	10.8	chr16	48591085	48592151	(41746194)	+	HERV35I-int	LTR/ERV1	1908	2990	(3928)	1469062
579	19.8	0.0	3.0	chr16	48592152	48592252	(41746093)	+	AluSx3	SINE/Alu	205	302	(9)	1469063
12182	19.3	12.0	10.8	chr16	48592253	48593727	(41744618)	+	HERV35I-int	LTR/ERV1	2991	4490	(2428)	1469062
18	17.6	3.6	3.5	chr16	53502830	53502884	(36835461)	+	G-rich	Low_complexity	1	57	(0)	1477950
14	15.3	2.6	2.6	chr16	53502905	53502942	(36835403)	+	(CCAGCC)n	Simple_repeat	1	39	(0)	1477951
3598	25.9	10.8	1.4	chr16	54525997	54527046	(35811299)	C	MLT1G1-int	LTR/ERVL-MaLR	(1)	1408	249	1479687
628	26.5	6.8	8.4	chr16	56595181	56595481	(33742864)	+	L1ME3G	LINE/L1	66	369	(555)	1483376
357	33.1	5.4	10.3	chr16	56595483	56595570	(33742775)	+	L1MC4a	LINE/L1	5699	5795	(2087)	1483368
1937	13.3	3.4	0.0	chr16	56595571	56595856	(33742489)	+	AluSz6	SINE/Alu	2	297	(15)	1483378
23906	16.4	1.9	4.5	chr16	65020630	65022129	(25316216)	C	MER41-int	LTR/ERV1	(2989)	2957	1519	1497273
860	12.2	7.8	7.4	chr16	66830274	66830476	(23507869)	+	MER33	DNA/hAT-Charlie	121	324	(0)	1500502
13	15.2	0.0	3.2	chr16	66830711	66830741	(23507604)	+	(CCCGG)n	Simple_repeat	1	31	(0)	1500503
13	21.6	4.7	4.5	chr16	67279303	67279366	(23058979)	+	G-rich	Low_complexity	1	67	(0)	1501369
15	13.8	0.0	2.9	chr16	67279460	67279493	(23058852)	+	(GGCGC)n	Simple_repeat	1	34	(0)	1501370
1748	16.2	16.4	2.3	chr16	68328112	68328496	(22009849)	+	LTR47A	LTR/ERVL	3	452	(0)	1503381
964	22.2	3.2	12.1	chr16	68328497	68328622	(22009723)	+	MER44A	DNA/TcMar-Tigger	229	338	(1)	1503379
19	25.3	1.4	2.8	chr16	69385514	69385583	(20952762)	+	(CGGCCCC)n	Simple_repeat	1	71	(0)	1505676
14	12.4	2.6	5.0	chr16	84116591	84116629	(6221716)	+	(GCCCCC)n	Simple_repeat	1	40	(0)	1532174
1297	25.6	1.9	2.2	chr16	87925197	87925563	(2412782)	C	MER68	LTR/ERVL	(23)	540	175	1539329
12	8.0	0.0	9.4	chr17	752273	752304	(82505137)	+	(CCGCC)n	Simple_repeat	1	32	(0)	1545737
235	11.4	0.0	0.0	chr17	10737449	10737483	(72519958)	C	U2	snRNA	(153)	35	1	1565167
3319	16.8	4.8	5.2	chr17	13170446	13172117	(70085324)	+	MER61-int	LTR/ERV1	1928	4415	(2773)	1569351
973	16.6	0.0	0.7	chr17	16250273	16250424	(67007017)	+	Tigger7	DNA/TcMar-Tigger	2341	2491	(0)	1574521
407	19.4	10.6	3.1	chr17	16250425	16250520	(67006921)	C	MLT1B	LTR/ERVL-MaLR	(286)	104	1	1574514
10364	13.6	3.4	3.0	chr17	16278387	16279073	(66978368)	C	MER41-int	LTR/ERV1	(1767)	3248	2632	1574585
532	16.5	3.4	0.0	chr17	16279073	16279157	(66978284)	C	MER41-int	LTR/ERV1	(5858)	88	1	1574585
1061	9.9	2.6	0.7	chr17	16279158	16279310	(66978131)	C	MER41B	LTR/ERV1	(0)	634	479	1574585
1447	10.0	3.1	8.3	chr17	18087496	18087625	(65169816)	+	MER30	DNA/hAT-Charlie	104	228	(2)	1577924
368	20.4	4.8	1.9	chr17	19649313	19649469	(63607972)	C	L1M5	LINE/L1	(809)	5385	5219	1581023
4124	14.8	8.8	12.0	chr17	21101931	21102167	(62155274)	+	ERV24B_Prim-int	LTR/ERV1	4827	5066	(2547)	1583659
2767	10.4	1.5	0.2	chr17	21102168	21102561	(62154880)	C	MER57B1	LTR/ERV1	(2)	399	1	1583663
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
1939	13.3	2.3	0.0	chr17	27468236	27468528	(55788913)	C	AluSz	SINE/Alu	(12)	300	1	1586849
484	20.3	2.3	6.6	chr17	27468529	27468551	(55788890)	C	L1MC5	LINE/L1	(110)	9194	9174	1586848
447	24.4	5.0	1.6	chr17	28744627	28744791	(54512650)	C	MIRb	SINE/MIR	(49)	219	47	1589233
17	28.6	1.7	0.0	chr17	28745190	28745249	(54512192)	+	(CCTC)n	Simple_repeat	1	61	(0)	1589234
41	32.5	0.0	0.0	chr17	29293893	29294029	(53963412)	+	(TGG)n	Simple_repeat	1	137	(0)	1590288
993	4.0	0.0	0.0	chr17	32822870	32822994	(50434447)	+	L1PA5	LINE/L1	6030	6154	(0)	1597471
13	21.9	0.0	2.6	chr17	39980927	39980965	(43276476)	+	(GGCCCC)n	Simple_repeat	1	39	(0)	1611119
13	4.1	8.0	0.0	chr17	39980983	39981007	(43276434)	+	(GGCGC)n	Simple_repeat	1	27	(0)	1611120
16	10.7	7.1	2.2	chr17	39981111	39981152	(43276289)	+	(GACGGCA)n	Simple_repeat	1	45	(0)	1611121
388	30.4	22.9	1.5	chr17	42294385	42294718	(40962723)	C	L2a	LINE/L2	(0)	3375	2995	1615319
867	8.3	0.0	0.0	chr17	42294902	42295010	(40962431)	C	AluSx3	SINE/Alu	(16)	295	187	1615320
428	32.5	6.5	11.2	chr17	43231681	43232037	(40025404)	+	L2c	LINE/L2	3048	3386	(1)	1617359
301	21.1	8.8	11.9	chr17	43232365	43232482	(40024959)	+	MER96B	DNA/hAT-Tip100	1	114	(303)	1617360
2018	19.7	0.5	1.4	chr17	43232486	43232908	(40024533)	+	LTR13	LTR/ERVK	1	419	(588)	1617361
455	14.1	1.2	2.5	chr17	44080953	44081049	(39176392)	+	FLAM_C	SINE/Alu	2	102	(200)	1619190
15	29.9	0.0	0.0	chr17	44138450	44138488	(39118953)	+	(CA)n	Simple_repeat	1	39	(0)	1619307
976	18.9	0.0	0.0	chr17	44138608	44138782	(39118659)	C	MER3	DNA/hAT-Charlie	(34)	175	1	1619308
13	20.0	2.4	2.3	chr17	45317001	45317042	(37940399)	+	(CCGCCGA)n	Simple_repeat	1	43	(0)	1621778
13	24.6	3.3	3.2	chr17	45317023	45317083	(37940358)	+	G-rich	Low_complexity	1	63	(0)	1621779
21	13.2	0.0	0.0	chr17	50185244	50185276	(33072165)	+	(T)n	Simple_repeat	1	33	(0)	1631298
13	21.3	0.0	0.0	chr17	50185468	50185500	(33071941)	+	G-rich	Low_complexity	1	33	(0)	1631299
48	0.0	3.9	0.0	chr17	50199688	50199738	(33057703)	+	(CCCCAGG)n	Simple_repeat	1	53	(0)	1631307
20	20.1	1.3	7.5	chr17	50707671	50707749	(32549692)	+	(GCCCC)n	Simple_repeat	1	80	(0)	1632279
202	35.3	5.8	1.7	chr17	54968066	54968202	(28289239)	+	MIR3	SINE/MIR	40	181	(87)	1638844
180	22.6	6.1	1.6	chr17	54969032	54969094	(28288347)	+	L2a	LINE/L2	3089	3154	(272)	1638845
17	18.0	1.5	8.7	chr17	56978024	56978091	(26279350)	+	(CCCAGC)n	Simple_repeat	1	69	(0)	1642369
23	17.4	2.4	7.1	chr17	56978092	56978102	(26279339)	+	(CCGCC)n	Simple_repeat	4	84	(0)	1642370
16	31.3	5.3	0.0	chr17	56978129	56978222	(26279219)	+	(CTGCTG)n	Simple_repeat	1	99	(0)	1642371
10776	10.6	2.2	1.7	chr17	57027407	57028427	(26229014)	C	MER41-int	LTR/ERV1	(3040)	4165	2199	1642469
11	21.5	6.0	1.9	chr17	61412641	61412690	(21844751)	+	(AGGCAC)n	Simple_repeat	1	53	(0)	1651017
1854	14.3	2.3	1.4	chr17	64422580	64422876	(18834565)	+	MER41-int	LTR/ERV1	2281	2580	(3366)	1656554
901	17.6	5.0	5.0	chr17	64422876	64422963	(18834478)	+	MER41-int	LTR/ERV1	3209	3295	(3623)	1656554
2220	9.4	0.0	1.7	chr17	64422964	64423278	(18834163)	C	AluSx	SINE/Alu	(0)	312	1	1656557
825	21.2	4.5	1.1	chr17	65919037	65919227	(17338214)	C	Charlie16a	DNA/hAT-Charlie	(1)	341	144	1659435
24	20.3	0.9	9.2	chr17	68205304	68205411	(15052030)	+	(CGCGCCC)n	Simple_repeat	1	109	(0)	1663741
29	5.8	0.0	0.0	chr17	68205729	68205764	(15051677)	+	(GCCCCG)n	Simple_repeat	1	36	(0)	1663742
20	7.0	0.0	0.0	chr17	68205965	68205994	(15051447)	+	(GGC)n	Simple_repeat	1	30	(0)	1663743
542	32.3	12.9	2.4	chr17	69086056	69086429	(14171012)	+	L2a	LINE/L2	2659	3077	(342)	1665195
219	29.1	0.0	0.0	chr17	69086428	69086482	(14170959)	+	L2a	LINE/L2	3334	3388	(38)	1665195
29	0.0	0.0	0.0	chr17	69086487	69086511	(14170930)	+	(AT)n	Simple_repeat	1	25	(0)	1665196
392	32.0	6.0	6.8	chr17	73613916	73614496	(9642945)	+	L2c	LINE/L2	2754	3329	(58)	1672655
2011	13.7	0.0	1.0	chr17	74775205	74775488	(8481953)	C	AluJo	SINE/Alu	(29)	283	1	1674792
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
13	0.0	0.0	0.0	chr17	82458441	82458457	(798984)	+	(GCC)n	Simple_repeat	1	17	(0)	1687667
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
401	28.3	3.0	3.8	chr18	847112	847243	(79526042)	+	MER20B	DNA/hAT-Charlie	1	131	(652)	1690592
1871	12.3	0.7	6.0	chr18	847416	847733	(79525552)	C	AluSq2	SINE/Alu	(11)	302	2	1690593
2554	6.3	0.0	0.0	chr18	2875980	2876280	(77497005)	C	AluSc8	SINE/Alu	(10)	301	1	1693408
1917	12.4	5.8	5.5	chr18	5861859	5862165	(74511120)	C	AluSg4	SINE/Alu	(1)	309	2	1697788
1012	8.5	0.7	6.7	chr18	5862166	5862237	(74511048)	+	MER41B	LTR/ERV1	572	634	(0)	1697787
407	19.8	2.3	5.5	chr18	5862238	5862328	(74510957)	+	MER41-int	LTR/ERV1	1	88	(5858)	1697787
625	10.6	0.0	0.0	chr18	5862328	5862412	(74510873)	+	MER41-int	LTR/ERV1	2632	2716	(3230)	1697787
12181	7.3	0.7	0.1	chr18	5862415	5864816	(74508469)	+	L1PA6	LINE/L1	3741	6154	(0)	1697789
1403	17.3	13.3	0.0	chr18	21587656	21587915	(58785370)	+	AluJo	SINE/Alu	2	301	(11)	1712857
942	22.5	1.1	0.0	chr18	21587944	21588121	(58785164)	+	FAM	SINE/Alu	2	181	(4)	1712858
644	26.0	11.8	6.5	chr18	21588125	21588371	(58784914)	+	L1M5	LINE/L1	4703	4964	(1182)	1712859
13	4.7	4.5	0.0	chr18	24271698	24271719	(56101566)	+	(CCT)n	Simple_repeat	1	23	(0)	1717613
26	6.3	0.0	0.0	chr18	24272237	24272270	(56101015)	+	(T)n	Simple_repeat	1	34	(0)	1717614
14	24.0	0.0	0.0	chr18	26548917	26548955	(53824330)	+	G-rich	Low_complexity	1	39	(0)	1721100
14	21.5	2.2	2.2	chr18	26549018	26549062	(53824223)	+	G-rich	Low_complexity	1	46	(0)	1721100
11	24.8	4.5	4.3	chr18	26549165	26549231	(53824054)	+	(CGGCGG)n	Simple_repeat	1	70	(0)	1721101
288	25.7	3.1	1.1	chr18	26651312	26651420	(53721865)	+	MIRb	SINE/MIR	11	128	(140)	1721296
2409	10.6	0.0	0.0	chr18	26651502	26651813	(53721472)	+	AluSx1	SINE/Alu	1	312	(0)	1721297
1732	18.4	6.6	2.1	chr18	31602614	31603001	(48770284)	C	MLT1C	LTR/ERVL-MaLR	(2)	465	59	1727919
3381	17.6	11.3	3.3	chr18	31603110	31603657	(48769628)	+	LTR8B	LTR/ERV1	25	645	(175)	1727920
825	32.2	5.4	0.6	chr18	35401988	35402306	(44970979)	C	LTR16A	LTR/ERVL	(7)	444	110	1733268
707	24.8	6.0	4.7	chr18	35402354	35402565	(44970720)	C	BLACKJACK	DNA/hAT-Blackjack	(2738)	231	17	1733269
253	17.4	0.0	4.2	chr18	35580690	35580761	(44792524)	C	MLT1N2	LTR/ERVL-MaLR	(13)	549	481	1733544
13	8.6	0.0	6.9	chr18	35972700	35972728	(44400557)	+	(GCG)n	Simple_repeat	1	29	(0)	1734074
429	27.0	9.1	8.7	chr18	35973081	35973595	(44399690)	+	L2-1_AMi	LINE/L2	141	657	(578)	1734075
728	26.4	10.4	2.1	chr18	36827266	36827657	(43545628)	C	L2a	LINE/L2	(159)	3267	2837	1735265
233	33.1	9.5	4.3	chr18	36827645	36827783	(43545502)	+	L2c	LINE/L2	3047	3193	(194)	1735266
2544	5.6	0.0	1.3	chr18	39799487	39799788	(40573497)	+	AluY	SINE/Alu	3	300	(11)	1739191
1697	17.6	1.2	5.1	chr18	39799789	39800030	(40573255)	C	MER61-int	LTR/ERV1	(4815)	402	161	1739189
1669	16.7	5.0	3.0	chr18	39800102	39800435	(40572850)	C	MER61A	LTR/ERV1	(0)	341	1	1739189
8763	15.7	4.0	5.0	chr18	68357890	68359184	(12014101)	+	MER57-int	LTR/ERV1	2218	4281	(2907)	1781663
1031	26.8	13.8	2.2	chr18	79200300	79200694	(1172591)	+	L1MEf	LINE/L1	2654	3070	(3249)	1795300
240	27.8	9.1	0.0	chr19	290274	290363	(58327253)	+	MIR	SINE/MIR	154	252	(10)	1796696
2322	9.6	0.7	0.0	chr19	982301	982603	(57635013)	+	AluSx	SINE/Alu	1	305	(7)	1798028
11	17.5	1.9	9.1	chr19	1208019	1208072	(57409544)	+	(CTGCC)n	Simple_repeat	1	55	(0)	1798411
43	0.0	0.0	0.0	chr19	1415354	1415390	(57202226)	+	(TG)n	Simple_repeat	1	37	(0)	1798760
18	8.2	0.0	0.0	chr19	1415391	1415411	(57202205)	+	(T)n	Simple_repeat	1	21	(0)	1798761
16	16.4	0.0	0.0	chr19	4343754	4343787	(54273829)	+	(GGACGA)n	Simple_repeat	1	34	(0)	1805403
28	27.4	0.0	3.9	chr19	4343803	4343905	(54273711)	+	G-rich	Low_complexity	1	103	(0)	1805404
583	28.6	21.0	0.3	chr19	5536013	5536321	(53081295)	C	L2b	LINE/L2	(1)	3374	2985	1808287
181	33.3	3.6	3.6	chr19	5536365	5536448	(53081168)	C	L2b	LINE/L2	(537)	2882	2799	1808287
5269	16.7	1.9	5.3	chr19	6293883	6294319	(52323297)	+	LTR25-int	LTR/ERV1	3773	4182	(3006)	1809827
2065	13.2	0.3	6.3	chr19	6294320	6294651	(52322965)	+	AluSx1	SINE/Alu	1	312	(0)	1809830
20	3.4	0.0	5.9	chr19	6531138	6531171	(52086445)	+	(GCT)n	Simple_repeat	1	34	(0)	1810499
249	30.1	1.9	2.8	chr19	23269617	23269722	(35347894)	C	MIR	SINE/MIR	(124)	138	34	1846439
1653	16.2	8.7	0.3	chr19	33077757	33078039	(25539577)	+	AluJo	SINE/Alu	3	311	(1)	1856116
1384	17.2	13.2	8.8	chr19	33078040	33078314	(25539302)	C	LTR24	LTR/ERV1	(112)	355	28	1856115
763	15.8	0.8	0.0	chr19	33078315	33078434	(25539182)	+	AluJr	SINE/Alu	136	256	(56)	1856117
2177	9.5	1.4	0.3	chr19	36055891	36056185	(22561431)	+	AluSx	SINE/Alu	5	302	(10)	1861775
499	31.5	7.4	1.8	chr19	36056345	36056626	(22560990)	+	L2c	LINE/L2	2934	3235	(152)	1861776
838	26.6	12.5	0.7	chr19	36128478	36128765	(22488851)	+	LTR10B	LTR/ERV1	179	505	(0)	1861928
12739	0.5	0.0	2.1	chr19	36270447	36272042	(22345574)	+	SST1	Satellite/centr	1	1563	(0)	1862253
24	29.7	0.0	2.5	chr19	36272043	36272123	(22345493)	+	(GT)n	Simple_repeat	1	81	(0)	1862254
26	23.7	3.8	3.6	chr19	36272113	36272129	(22345487)	+	(CTGTCT)n	Simple_repeat	1	66	(44)	1862255
36	20.5	1.2	1.2	chr19	36272130	36272209	(22345407)	+	(TC)n	Simple_repeat	1	81	(0)	1862256
2359	10.2	0.3	1.3	chr19	37902203	37902516	(20715100)	C	AluSx	SINE/Alu	(0)	312	2	1865330
20	14.4	0.0	0.0	chr19	37953533	37953564	(20664052)	+	(TG)n	Simple_repeat	1	32	(0)	1865467
398	24.1	0.0	3.6	chr19	37953892	37954003	(20663613)	C	Charlie2b	DNA/hAT-Charlie	(6)	2776	2669	1865468
13	16.0	5.7	0.0	chr19	41957982	41958016	(16659600)	+	GA-rich	Low_complexity	1	37	(0)	1874252
30	22.1	0.0	3.6	chr19	42177009	42177092	(16440524)	+	(GCGG)n	Simple_repeat	1	84	(0)	1874738
17	6.5	2.8	5.4	chr19	42177108	42177143	(16440473)	+	(GCCC)n	Simple_repeat	1	37	(0)	1874739
28	3.3	0.0	0.0	chr19	42177252	42177282	(16440334)	+	(CCCGCT)n	Simple_repeat	1	31	(0)	1874740
31	0.0	0.0	0.0	chr19	42370844	42370872	(16246744)	+	(G)n	Simple_repeat	1	29	(0)	1875128
311	31.6	0.0	2.1	chr19	44207850	44207946	(14409670)	+	MIR	SINE/MIR	61	155	(107)	1878370
12	21.2	2.1	4.2	chr19	45001692	45001738	(13615878)	+	G-rich	Low_complexity	1	48	(0)	1880193
5111	14.0	3.6	1.0	chr19	46061280	46062113	(12555503)	C	MER57-int	LTR/ERV1	(3900)	3637	2781	1882907
486	23.3	7.9	1.5	chr19	47699696	47699826	(10917790)	C	MER96	DNA/hAT-Tip100	(28)	147	8	1886810
2419	7.6	0.0	0.7	chr19	48811212	48811514	(9806102)	+	AluSx1	SINE/Alu	2	302	(10)	1889666
695	28.1	5.5	10.9	chr19	48817479	48817740	(9799876)	+	L2a	LINE/L2	3182	3426	(0)	1889676
423	36.1	1.8	4.8	chr19	48817759	48817985	(9799631)	C	MIR	SINE/MIR	(17)	245	26	1889682
2312	10.7	1.0	0.0	chr19	48818030	48818337	(9799279)	+	AluSx	SINE/Alu	1	311	(1)	1889683
967	12.1	0.0	0.0	chr19	50098956	50099087	(8518529)	C	AluYa5	SINE/Alu	(179)	132	1	1892629
237	27.9	0.0	0.0	chr19	50099127	50099187	(8518429)	C	L1MC4	LINE/L1	(5505)	710	650	1892628
4267	15.9	0.8	4.1	chr19	50135484	50135964	(8481652)	C	L1P4	LINE/L1	(2469)	3677	3219	1892740
1885	14.3	2.4	0.9	chr19	50135965	50136288	(8481328)	+	L1PB1	LINE/L1	5822	6150	(1)	1892741
4267	15.9	0.8	4.1	chr19	50136289	50136658	(8480958)	C	L1P4	LINE/L1	(2928)	3218	2854	1892740
1120	9.2	0.0	13.3	chr19	50136668	50136863	(8480753)	+	AluSx	SINE/Alu	137	306	(6)	1892742
323	25.0	10.1	2.4	chr19	50136865	50137073	(8480543)	C	L1MC4	LINE/L1	(5098)	1117	891	1892743
232	30.1	5.2	0.4	chr19	55670357	55670454	(2947162)	C	L2a	LINE/L2	(18)	3408	3251	1904263
2140	12.4	0.7	0.0	chr19	57563284	57563574	(1054042)	+	AluSc8	SINE/Alu	1	293	(18)	1907991
31543	14.0	4.2	2.1	chr19	57563575	57564357	(1053259)	C	LTR25-int	LTR/ERV1	(2888)	4300	3486	1907989
1550	23.1	10.9	9.4	chr19	58520425	58520773	(96843)	+	MLT1E2	LTR/ERVL-MaLR	11	367	(260)	1909664
126	18.2	0.0	1.2	chr19	58576330	58576569	(41047)	+	(TTCC)n	Simple_repeat	1	240	(0)	1909753
12	7.8	7.4	0.0	chr2	9474893	9474919	(232718610)	+	(CCGCG)n	Simple_repeat	1	29	(0)	1923012
428	25.9	1.6	10.8	chr2	11345436	11345647	(230847882)	+	L1ME4c	LINE/L1	322	513	(317)	1926454
16	19.4	4.7	4.5	chr2	26786210	26786273	(215407256)	+	(GCCCGA)n	Simple_repeat	1	67	(0)	1950610
33	0.0	0.0	0.0	chr2	27086722	27086752	(215106777)	+	(CGGGG)n	Simple_repeat	1	31	(0)	1951151
27136	13.7	5.2	3.1	chr2	30827919	30830598	(211362931)	+	MER57-int	LTR/ERV1	970	4406	(3131)	1957600
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
25	16.0	5.5	2.6	chr2	32947058	32947130	(209246399)	+	(CCCGCTC)n	Simple_repeat	1	77	(0)	1961244
18	17.3	2.0	4.0	chr2	32947622	32947670	(209245859)	+	(CCG)n	Simple_repeat	1	50	(0)	1961245
21	14.9	0.0	4.2	chr2	32947823	32947870	(209245659)	+	(GCCC)n	Simple_repeat	1	48	(0)	1961246
16	8.5	0.0	0.0	chr2	36356349	36356373	(205837156)	+	(GCT)n	Simple_repeat	1	25	(0)	1965967
14	21.9	1.6	6.5	chr2	36356374	36356385	(205837144)	+	(CGGCTG)n	Simple_repeat	40	62	(0)	1965966
10639	14.8	5.0	5.5	chr2	36629947	36630933	(205562596)	C	HERV35I-int	LTR/ERV1	(2879)	4039	2721	1966276
3120	11.4	12.6	1.8	chr2	36630934	36631496	(205562033)	+	LTR10E	LTR/ERV1	1	633	(0)	1966277
17	8.1	0.0	0.0	chr2	46617235	46617260	(195576269)	+	(CTG)n	Simple_repeat	1	26	(0)	1982534
13	16.2	0.0	0.0	chr2	50507362	50507389	(191686140)	+	GA-rich	Low_complexity	1	28	(0)	1988838
18	24.0	1.2	7.1	chr2	54724835	54724918	(187468611)	+	(CGG)n	Simple_repeat	1	85	(0)	1994740
215	22.5	17.5	0.0	chr2	55051554	55051633	(187141896)	C	L2c	LINE/L2	(9)	3378	3282	1995184
1009	17.0	10.8	4.3	chr2	55051637	55051937	(187141592)	+	MER33	DNA/hAT-Charlie	1	323	(1)	1995185
56	20.4	1.4	2.8	chr2	55269449	55269589	(186923940)	+	(TTTC)n	Simple_repeat	1	143	(0)	1995600
12	10.4	6.1	2.9	chr2	55419886	55419918	(186773611)	+	(CCCG)n	Simple_repeat	1	35	(0)	1995872
18	12.4	0.0	2.7	chr2	55420095	55420131	(186773398)	+	(GGCGCG)n	Simple_repeat	1	37	(0)	1995873
24	26.7	4.6	0.0	chr2	62195999	62196085	(179997444)	+	G-rich	Low_complexity	1	91	(0)	2006020
482	6.9	0.0	0.0	chr2	64875963	64876020	(177317509)	C	LSU-rRNA_Hsa	rRNA	(3069)	1966	1909	2010111
230	19.7	8.4	1.3	chr2	64876040	64876116	(177317413)	+	MER58C	DNA/hAT-Charlie	74	156	(59)	2010112
14	24.5	0.0	2.2	chr2	64876469	64876513	(177317016)	+	(CTCCTC)n	Simple_repeat	1	45	(0)	2010113
293	29.1	6.9	4.5	chr2	68453479	68453676	(173739853)	+	LTR81AB	LTR/Gypsy	17	219	(59)	2015634
2893	20.7	5.7	2.9	chr2	68453681	68454381	(173739148)	+	MER72	LTR/ERV1	1	722	(0)	2015635
320	23.8	5.6	0.0	chr2	85814077	85814160	(156379369)	+	LTR88c	LTR/Gypsy?	634	722	(140)	2041553
434	24.2	16.2	0.0	chr2	85814516	85814639	(156378890)	C	MIRc	SINE/MIR	(115)	153	6	2041554
17	24.4	1.0	8.2	chr2	86623345	86623440	(155570089)	+	G-rich	Low_complexity	1	97	(0)	2042943
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
21	8.8	2.8	0.0	chr2	91478098	91478133	(150715396)	+	(CCG)n	Simple_repeat	1	37	(0)	2048369
3367	12.7	2.1	0.4	chr2	96408311	96408825	(145784704)	+	LTR45	LTR/ERV1	2	525	(0)	2052096
2451	13.9	4.5	6.8	chr2	96408842	96408967	(145784562)	+	LTR35A	LTR/ERV1	1	137	(410)	2052097
25	28.2	2.0	6.0	chr2	96760837	96760984	(145432545)	+	G-rich	Low_complexity	1	151	(0)	2052732
4420	21.2	8.9	1.5	chr2	100749400	100750670	(141442859)	+	L1MDa	LINE/L1	1303	2673	(3864)	2058447
194	31.0	4.9	0.0	chr2	100750671	100750728	(141442801)	C	MIR3	SINE/MIR	(106)	102	42	2058451
312	21.7	18.8	2.1	chr2	100751144	100751284	(141442245)	+	LTR33B	LTR/ERVL	56	225	(278)	2058452
4706	12.1	3.7	2.9	chr2	107618083	107618855	(134574674)	+	PABL_A-int	LTR/ERV1	2167	2946	(3000)	2068118
17093	12.5	3.4	3.5	chr2	109091603	109094547	(133098982)	+	HUERS-P1-int	LTR/ERV1	1	3516	(4021)	2070268
2066	14.2	0.0	0.0	chr2	109094548	109094860	(133098669)	+	AluSq2	SINE/Alu	1	313	(0)	2070269
596	23.1	5.2	5.7	chr2	128055388	128055570	(114137959)	+	LTR29	LTR/ERV1	251	469	(175)	2098556
2067	11.9	1.0	2.0	chr2	128055577	128055878	(114137651)	+	AluSx	SINE/Alu	2	300	(12)	2098557
796	23.4	3.0	3.8	chr2	128055880	128056128	(114137401)	+	MER4CL34	LTR/ERV1	520	765	(0)	2098558
8565	11.8	2.4	0.5	chr2	154472450	154473787	(87719742)	C	MER57-int	LTR/ERV1	(3163)	4374	3012	2135010
676	21.2	4.3	12.9	chr2	161278581	161278835	(80914694)	C	L1MB8	LINE/L1	(108)	6070	5839	2144203
67	0.0	0.0	0.0	chr2	161278891	161278950	(80914579)	+	(TCCT)n	Simple_repeat	1	60	(0)	2144204
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
4219	19.7	2.0	2.6	chr2	163081241	163082100	(79111429)	+	HERV35I-int	LTR/ERV1	2794	3648	(3270)	2146482
583	15.9	0.9	1.7	chr2	167972626	167972740	(74220789)	+	MER57-int	LTR/ERV1	1901	2014	(3932)	2152888
13098	10.9	4.6	4.7	chr2	167972747	167975207	(74218322)	+	MER57-int	LTR/ERV1	3252	5595	(1942)	2152889
25865	14.6	3.8	4.3	chr2	170449807	170453409	(71740120)	C	HUERS-P1-int	LTR/ERV1	(1529)	4734	1107	2156651
11	28.2	0.0	2.2	chr2	170929816	170929860	(71263669)	+	(GGAGCC)n	Simple_repeat	1	45	(0)	2157501
6478	17.9	3.5	7.1	chr2	172539671	172540072	(69653457)	+	MER61-int	LTR/ERV1	3793	4189	(2999)	2160299
1978	15.7	0.0	0.0	chr2	172540073	172540365	(69653164)	+	AluSx1	SINE/Alu	5	297	(15)	2160303
17796	23.5	8.8	8.7	chr2	173294926	173295852	(68897677)	C	LTR25-int	LTR/ERV1	(2236)	4952	4083	2161426
3599	15.3	3.8	1.2	chr2	177837576	177838473	(64355056)	+	MER57-int	LTR/ERV1	2261	2903	(4634)	2168159
573	24.7	2.4	0.0	chr2	181657310	181657471	(60536058)	C	MER5A1	DNA/hAT-Charlie	(0)	166	1	2172980
20972	16.3	5.0	6.7	chr2	194606443	194609012	(47584517)	+	HUERS-P3b-int	LTR/ERV1	3073	5647	(1771)	2189871
29670	13.2	2.0	1.9	chr2	196125575	196129512	(46064017)	C	LTR25-int	LTR/ERV1	(775)	6413	2459	2191936
315	25.4	6.3	8.5	chr2	199955997	199956125	(42237404)	+	L1MDb	LINE/L1	649	774	(5635)	2197597
12075	11.1	1.6	1.0	chr2	200552951	200555166	(41638363)	C	MER41-int	LTR/ERV1	(1114)	6091	4096	2198508
3500	14.5	2.1	3.5	chr2	200555135	200555947	(41637582)	C	MER41-int	LTR/ERV1	(4180)	3357	2167	2198508
312	27.4	7.4	2.6	chr2	201803848	201803963	(40389566)	C	LTR16D	LTR/ERVL	(311)	340	219	2200610
1016	19.1	2.3	0.0	chr2	201804327	201804494	(40389035)	+	FAM	SINE/Alu	6	177	(8)	2200613
46	0.0	0.0	0.0	chr2	203535259	203535300	(38658229)	+	(TGAC)n	Simple_repeat	1	42	(0)	2204168
33	12.7	1.6	1.6	chr2	203535304	203535365	(38658164)	+	(GGC)n	Simple_repeat	1	63	(0)	2204169
31	25.4	4.6	2.2	chr2	203535450	203535580	(38657949)	+	(CCGCCCG)n	Simple_repeat	1	137	(0)	2204170
268	8.1	0.0	0.0	chr2	205104847	205104883	(37088646)	C	tRNA-Glu-GAA	tRNA	(38)	37	1	2206478
727	25.1	1.1	0.6	chr2	205105088	205105263	(37088266)	+	MIR	SINE/MIR	45	221	(41)	2206479
15	21.0	3.9	1.9	chr2	206085225	206085275	(36108254)	+	(CCCGG)n	Simple_repeat	1	53	(0)	2207943
15	10.9	4.4	6.4	chr2	206085808	206085852	(36107677)	+	(GCCC)n	Simple_repeat	1	47	(0)	2207944
4282	16.5	6.9	0.3	chr2	206282710	206283365	(35910164)	C	L1MB7	LINE/L1	(17)	6167	5473	2208386
32	0.0	6.7	2.1	chr2	206283366	206283410	(35910119)	+	(TTG)n	Simple_repeat	1	48	(0)	2208387
4282	15.2	10.9	3.3	chr2	206283411	206283672	(35909857)	C	L1MB7	LINE/L1	(712)	5472	5203	2208386
14	13.2	2.9	2.8	chr2	209771905	209771939	(32421590)	+	G-rich	Low_complexity	1	36	(0)	2213450
18	23.3	2.0	0.0	chr2	209772220	209772269	(32421260)	+	(GCC)n	Simple_repeat	1	51	(0)	2213451
2221	10.5	0.0	1.6	chr2	215383002	215383307	(26810222)	C	AluSz	SINE/Alu	(11)	301	1	2221005
270	30.0	7.2	0.0	chr2	215399023	215399112	(26794417)	C	MIRc	SINE/MIR	(26)	242	146	2221028
182	19.0	6.5	3.3	chr2	215399137	215399196	(26794333)	C	MIRb	SINE/MIR	(190)	78	17	2221029
12	8.9	4.2	0.0	chr2	215409942	215409965	(26783564)	+	(GGT)n	Simple_repeat	1	25	(0)	2221046
597	26.7	0.6	2.4	chr2	215742399	215742563	(26450966)	C	MER5B	DNA/hAT-Charlie	(16)	162	1	2221574
241	26.7	6.5	0.0	chr2	215742830	215742930	(26450599)	C	MamGypLTR1a	LTR/Gypsy	(28)	756	649	2221575
22	3.0	2.8	2.7	chr2	226792122	226792157	(15401372)	+	(TCTTTT)n	Simple_repeat	1	37	(0)	2239461
363	20.9	3.2	0.0	chr2	231832547	231832635	(10360894)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
331	23.9	2.1	0.0	chr2	231832636	231832725	(10360804)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
360	23.2	2.0	2.0	chr2	231832753	231832853	(10360676)	+	MER20	DNA/hAT-Charlie	119	219	(0)	2247713
780	29.9	10.0	4.1	chr2	239687412	239688055	(2505474)	C	L1MC4	LINE/L1	(337)	7705	6944	2259204
547	28.6	7.6	2.5	chr20	382590	382826	(64061341)	C	MIRb	SINE/MIR	(2)	266	17	2262817
13	23.9	2.3	0.0	chr20	1185079	1185122	(63259045)	+	(CCCGGCC)n	Simple_repeat	1	45	(0)	2264564
187	20.0	0.0	4.8	chr20	21125660	21125701	(43318466)	+	MIRb	SINE/MIR	213	252	(16)	2296641
411	24.8	0.0	9.9	chr20	29411577	29411728	(35032439)	+	LSAU	Satellite	2	138	(360)	2304090
2860	28.3	4.9	5.5	chr20	30283322	30285229	(34158938)	+	SST1	Satellite/centr	1	1895	(14)	2304820
1159	13.1	0.5	0.0	chr20	30519545	30520660	(33923507)	C	ACRO1	Satellite/acro	(55)	1121	1	2305115
4636	22.9	5.1	7.7	chr20	30625824	30628238	(33815929)	C	L1PA13	LINE/L1	(3745)	3021	486	2305284
1030	9.4	0.8	0.0	chr20	30866424	30866600	(33577567)	+	BSR/Beta	Satellite	1	178	(0)	2305529
15	4.8	0.0	0.0	chr20	34216182	34216203	(30227964)	+	(GCAA)n	Simple_repeat	1	22	(0)	2312528
14	5.0	0.0	0.0	chr20	34216252	34216272	(30227895)	+	(CGC)n	Simple_repeat	1	21	(0)	2312529
1616	25.4	9.5	0.5	chr20	34216376	34216932	(30227235)	C	L1MEg	LINE/L1	(925)	5221	4610	2312530
18	14.1	0.0	8.9	chr20	46364476	46364531	(18079636)	+	G-rich	Low_complexity	1	56	(0)	2337537
12	20.8	0.0	2.9	chr20	46364531	46364565	(18079602)	+	(GTCTG)n	Simple_repeat	1	35	(0)	2337538
954	13.1	1.4	0.0	chr20	52105436	52105580	(12338587)	+	MER5A1	DNA/hAT-Charlie	16	162	(4)	2350768
299	27.4	0.0	1.4	chr20	56344397	56344470	(8099697)	+	MIR	SINE/MIR	103	175	(87)	2358834
2508	17.7	4.2	1.4	chr20	64285514	64286699	(157468)	+	TAR1	Satellite/telo	1	1219	(1436)	2370665
605	6.4	0.9	3.6	chr20	64286700	64287633	(156534)	+	(AGGGTT)n	Simple_repeat	1	942	(0)	2370666
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
40632	0.2	1.2	0.8	chr21	8214773	8218941	(38491042)	+	LSU-rRNA_Hsa	rRNA	878	5034	(1)	2373279
880	13.0	0.0	0.0	chr21	8239093	8239215	(38470768)	C	AluSx3	SINE/Alu	(9)	302	180	2373343
47	0.0	0.0	0.0	chr21	8239234	8239276	(38470707)	+	(T)n	Simple_repeat	1	43	(0)	2373344
37669	0.4	1.2	0.8	chr21	8397807	8401980	(38308003)	+	LSU-rRNA_Hsa	rRNA	878	5034	(1)	2373509
24	15.5	7.0	0.0	chr21	8401981	8402037	(38307946)	+	(CG)n	Simple_repeat	1	61	(0)	2373511
14	13.3	9.8	0.0	chr21	8402028	8402068	(38307915)	+	(CGTC)n	Simple_repeat	1	45	(0)	2373512
312	38.2	6.5	3.6	chr21	8419786	8420171	(38289812)	C	HAL1	LINE/L1	(1230)	1277	880	2373573
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
12	20.8	0.0	2.9	chr21	8434102	8434136	(38275847)	+	(CCG)n	Simple_repeat	1	35	(0)	2373611
25399	0.2	1.5	0.8	chr21	8441146	8441992	(38267991)	+	LSU-rRNA_Hsa	rRNA	1	877	(4158)	2373624
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
198	33.8	7.5	4.8	chr21	8850074	8850241	(37859742)	+	MIRb	SINE/MIR	48	220	(48)	2374054
1263	30.4	12.1	1.4	chr21	9257066	9257711	(37452272)	C	L2	LINE/L2	(1779)	1640	916	2374355
1683	29.2	6.3	6.8	chr21	9810881	9812152	(36897831)	C	SST1	Satellite/centr	(14)	1549	284	2374881
19	33.9	0.0	1.2	chr21	9812172	9812228	(36897755)	+	(GACA)n	Simple_repeat	1	86	(0)	2374882
18	10.4	0.0	0.0	chr21	9812229	9812259	(36897724)	+	(ACACAC)n	Simple_repeat	1	31	(0)	2374883
1892	29.2	5.1	6.4	chr21	9812264	9813560	(36896423)	C	SST1	Satellite/centr	(1)	1562	284	2374884
1562	29.8	5.6	6.5	chr21	9817901	9819192	(36890791)	C	SST1	Satellite/centr	(1)	1562	284	2374896
20	28.0	1.7	0.0	chr21	9819212	9819271	(36890712)	+	GA-rich	Low_complexity	1	61	(0)	2374897
21	16.7	0.0	2.4	chr21	9819273	9819314	(36890669)	+	(AC)n	Simple_repeat	1	42	(0)	2374898
1996	29.3	5.0	5.8	chr21	9819321	9820600	(36889383)	C	SST1	Satellite/centr	(11)	1552	284	2374899
1750	28.6	6.0	7.2	chr21	9822132	9823427	(36886556)	C	SST1	Satellite/centr	(1)	1562	284	2374905
1676	16.4	2.0	3.7	chr21	10415954	10416252	(36293731)	+	AluJb	SINE/Alu	1	294	(18)	2375512
2365	7.8	0.0	0.0	chr21	14362960	14363242	(32346741)	C	AluSq2	SINE/Alu	(30)	283	1	2377727
299	31.6	11.4	9.9	chr21	14363326	14363609	(32346374)	+	L2c	LINE/L2	3095	3383	(4)	2377728
463	23.3	4.8	0.0	chr21	31098577	31098696	(15611287)	+	MIR3	SINE/MIR	77	202	(6)	2400759
282	30.4	3.4	3.4	chr21	31423513	31423631	(15286352)	+	L2c	LINE/L2	3228	3346	(41)	2401301
25	0.0	0.0	0.0	chr21	31423701	31423727	(15286256)	+	(A)n	Simple_repeat	1	27	(0)	2401302
1625	14.9	4.3	3.5	chr21	31423728	31424046	(15285937)	+	L1MB8	LINE/L1	5854	6175	(3)	2401303
506	34.8	13.6	5.3	chr21	32646919	32648903	(14061080)	+	L2b	LINE/L2	343	2517	(902)	2403556
541	35.6	8.8	4.8	chr21	32648948	32649283	(14060700)	+	L2b	LINE/L2	3024	3374	(1)	2403556
18237	17.1	3.0	3.7	chr21	32854061	32857329	(13852654)	C	LTR25-int	LTR/ERV1	(1)	7187	3914	2403887
2382	10.1	0.0	0.0	chr21	32857330	32857637	(13852346)	+	AluY	SINE/Alu	4	311	(0)	2403888
1572	16.7	1.0	7.6	chr21	43596594	43596910	(3113073)	+	AluJo	SINE/Alu	11	306	(6)	2420479
484	32.5	8.9	4.3	chr21	43596911	43597317	(3112666)	+	L1MEb	LINE/L1	169	598	(5472)	2420478
694	21.8	9.2	1.8	chr21	43597374	43597518	(3112465)	C	MER96B	DNA/hAT-Tip100	(4)	413	262	2420480
11	25.1	0.0	4.3	chr21	44968003	44968048	(1741935)	+	G-rich	Low_complexity	1	46	(0)	2422368
20	18.5	3.0	4.3	chr21	44968331	44968397	(1741586)	+	(CCATGTG)n	Simple_repeat	1	69	(0)	2422369
487	26.0	6.1	1.9	chr22	11309822	11309978	(39508490)	C	MIRb	SINE/MIR	(72)	196	33	2425024
1062	7.7	0.0	0.0	chr22	11310020	11310186	(39508282)	C	BSR/Beta	Satellite	(0)	167	1	2425025
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
194	23.1	0.0	1.9	chr22	11817844	11817896	(39000572)	C	MER5A	DNA/hAT-Charlie	(20)	169	118	2425392
590	21.9	0.2	0.0	chr22	11818875	11819136	(38999332)	+	ACRO1	Satellite/acro	1	262	(0)	2425395
1124	22.8	3.2	0.8	chr22	11900617	11900862	(38917606)	C	AluJr	SINE/Alu	(48)	264	13	2425511
5492	25.2	7.0	0.9	chr22	11917727	11919230	(38899238)	+	MSTA-int	LTR/ERVL-MaLR	28	1631	(0)	2425534
3134	12.3	0.8	0.0	chr22	11930604	11931100	(38887368)	+	L1PA13	LINE/L1	5175	5675	(1091)	2425549
290	22.2	1.5	0.5	chr22	11932477	11932565	(38885903)	C	L1P4	LINE/L1	(1123)	5023	4933	2425553
41	8.0	0.0	0.0	chr22	12173926	12173978	(38644490)	+	(GT)n	Simple_repeat	1	53	(0)	2425781
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
450	28.2	0.8	0.0	chr22	17949836	17949959	(32868509)	C	MER5A1	DNA/hAT-Charlie	(20)	146	22	2429924
1061	13.8	0.0	0.6	chr22	17950167	17950325	(32868143)	C	AluSz6	SINE/Alu	(18)	294	137	2429925
2005	9.4	2.5	0.0	chr22	17950327	17950636	(32867832)	C	AluSq2	SINE/Alu	(0)	313	1	2429926
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
13	18.3	2.6	2.5	chr22	19431815	19431853	(31386615)	+	G-rich	Low_complexity	1	40	(0)	2431997
1153	11.0	0.7	0.0	chr22	20338381	20338535	(30479933)	+	AluYm1	SINE/Alu	13	168	(143)	2433146
51	2.3	11.4	0.0	chr22	20338573	20338660	(30479808)	+	(AT)n	Simple_repeat	1	98	(0)	2433147
4938	1.6	0.2	0.0	chr22	20338666	20339226	(30479242)	+	HSATI	Satellite	6	567	(10)	2433148
205	33.7	0.0	0.9	chr22	20394683	20394759	(30423709)	C	MIRc	SINE/MIR	(72)	158	84	2433233
2082	10.9	2.7	1.0	chr22	20394760	20395052	(30423416)	C	AluSz	SINE/Alu	(14)	298	1	2433234
1707	15.1	8.7	0.0	chr22	30920021	30920305	(19898163)	C	AluJo	SINE/Alu	(0)	312	1	2453622
270	24.4	6.5	4.2	chr22	32051254	32051373	(18767095)	+	MIR3	SINE/MIR	78	200	(8)	2456279
2583	9.9	0.0	0.0	chr22	33122346	33122658	(17695810)	C	AluSq2	SINE/Alu	(0)	313	1	2458441
6832	15.2	4.5	2.9	chr22	33122659	33123609	(17694859)	C	MER66-int	LTR/ERV1	(4512)	2164	1210	2458440
13	15.9	0.0	0.0	chr22	36481469	36481496	(14336972)	+	(CCGC)n	Simple_repeat	1	28	(0)	2465156
33130	11.4	3.4	4.1	chr22	37189940	37195467	(13623001)	C	MER41-int	LTR/ERV1	(0)	5552	1	2466694
15	11.7	0.0	0.0	chr22	38505819	38505846	(12312622)	+	(CTCGC)n	Simple_repeat	1	28	(0)	2469636
388	36.7	7.8	3.2	chr22	43275455	43275857	(7542611)	C	L2b	LINE/L2	(35)	3340	2918	2479920
13	26.8	0.0	7.0	chr22	46536919	46536989	(4281479)	+	(GCGCCCC)n	Simple_repeat	1	71	(0)	2485680
19	26.7	1.5	1.5	chr22	46537102	46537166	(4281302)	+	(CGG)n	Simple_repeat	1	66	(0)	2485681
27	25.2	1.3	0.0	chr22	47115001	47115076	(3703392)	+	G-rich	Low_complexity	1	77	(0)	2486449
218	29.4	1.4	0.0	chr3	9843325	9843392	(188452167)	C	MIRc	SINE/MIR	(154)	114	46	2508086
201	26.7	9.6	1.3	chr3	9843710	9843785	(188451774)	C	MIR3	SINE/MIR	(17)	191	109	2508087
331	30.1	12.1	1.9	chr3	10248046	10248201	(188047358)	+	MIRb	SINE/MIR	60	233	(35)	2509044
12	21.5	7.1	1.7	chr3	10248718	10248773	(188046786)	+	(CGGCGCC)n	Simple_repeat	1	60	(0)	2509045
1233	14.2	13.7	3.4	chr3	12587838	12588105	(185707454)	C	AluJo	SINE/Alu	(12)	300	1	2513588
40	20.6	6.2	3.5	chr3	14810527	14810706	(183484853)	+	(GCGCCCC)n	Simple_repeat	1	184	(0)	2517652
12308	15.5	3.8	3.8	chr3	20448123	20453049	(177842510)	C	MER41-int	LTR/ERV1	(1)	7187	632	2526180
224	30.8	8.6	7.0	chr3	27728288	27728458	(170567101)	C	L2b	LINE/L2	(17)	3358	3185	2536650
2483	8.7	0.0	0.3	chr3	31162716	31163025	(167132534)	C	AluSg7	SINE/Alu	(0)	309	1	2541645
23511	10.4	3.2	4.0	chr3	40347616	40350180	(157945379)	+	MER41-int	LTR/ERV1	1980	4534	(1412)	2555797
2350	10.4	0.7	0.0	chr3	40522595	40522902	(157772657)	C	AluSx1	SINE/Alu	(1)	311	2	2556159
1879	21.9	4.3	14.0	chr3	40522903	40523241	(157772318)	+	MLT1F	LTR/ERVL-MaLR	269	544	(4)	2556158
11219	15.3	3.9	2.5	chr3	40558821	40560131	(157735428)	C	HERV35I-int	LTR/ERV1	(3464)	3454	2101	2556222
1084	26.4	3.5	1.6	chr3	40998412	40998780	(157296779)	+	LTR16E1	LTR/ERVL	159	534	(4)	2556851
221	33.1	3.2	5.7	chr3	49094659	49094850	(149200709)	+	L2b	LINE/L2	3015	3201	(174)	2570662
13	18.2	2.6	2.5	chr3	50359148	50359186	(147936373)	+	(AGGCCC)n	Simple_repeat	1	40	(0)	2572946
291	21.1	14.8	4.6	chr3	51538360	51538468	(146757091)	C	MIRb	SINE/MIR	(45)	223	102	2574562
19	13.0	0.0	0.0	chr3	51538798	51538831	(146756728)	+	(CCG)n	Simple_repeat	1	34	(0)	2574563
14	17.3	5.1	0.0	chr3	51538872	51538910	(146756649)	+	(CGGCG)n	Simple_repeat	1	41	(0)	2574564
284	22.2	14.7	1.0	chr3	52154092	52154191	(146141368)	+	L2b	LINE/L2	3242	3357	(18)	2575489
2301	10.3	0.0	0.7	chr3	57068920	57069220	(141226339)	C	AluSg7	SINE/Alu	(10)	299	1	2583304
4995	17.1	4.3	2.7	chr3	63349400	63349720	(134945839)	C	L1PB4	LINE/L1	(1598)	4548	4233	2593872
320	21.9	0.0	9.6	chr3	75668819	75668954	(122626605)	C	LSAU	Satellite	(374)	124	2	2614560
670	29.8	6.2	2.9	chr3	87359739	87360052	(110935507)	C	LTR33A_	LTR/ERVL	(0)	531	207	2629441
1551	11.6	0.0	2.6	chr3	97902474	97902704	(100392855)	C	L1PA8A	LINE/L1	(0)	6131	5907	2638363
1013	16.2	7.3	0.6	chr3	99686691	99686857	(98608702)	C	AluJb	SINE/Alu	(16)	296	118	2640562
1534	16.7	9.5	0.7	chr3	99686875	99687143	(98608416)	C	AluJo	SINE/Alu	(17)	295	1	2640563
486	30.7	9.6	4.7	chr3	99687171	99687406	(98608153)	+	MIRc	SINE/MIR	3	251	(17)	2640564
3941	14.1	5.8	1.6	chr3	100467605	100468933	(97826626)	+	LTR25-int	LTR/ERV1	609	2904	(4633)	2641776
2234	14.4	4.4	1.7	chr3	100468934	100469287	(97826272)	C	THE1B	LTR/ERVL-MaLR	(0)	364	1	2641778
15629	11.6	3.2	3.3	chr3	100582417	100585873	(97709686)	C	MER41-int	LTR/ERV1	(644)	5302	2061	2641939
2302	9.9	0.0	1.3	chr3	103370423	103370725	(94924834)	C	AluSc	SINE/Alu	(10)	299	1	2645708
4427	13.3	3.7	3.4	chr3	111348652	111349428	(86946131)	C	MER41-int	LTR/ERV1	(3000)	2946	2167	2656424
299	31.9	9.1	4.0	chr3	114731358	114731608	(83563951)	C	CR1-3_Croc	LINE/CR1	(1268)	2337	2073	2661117
283	35.4	9.0	6.5	chr3	114732025	114732284	(83563275)	C	L3	LINE/CR1	(1232)	2867	2601	2661113
545	33.9	0.9	2.2	chr3	116000203	116000425	(82295134)	C	MIRb	SINE/MIR	(6)	262	43	2662890
262	30.1	0.0	9.7	chr3	120627529	120627642	(77667917)	+	L2c	LINE/L2	3281	3383	(4)	2669431
608	20.4	0.9	0.0	chr3	120627661	120627773	(77667786)	C	MER81	DNA/hAT-Blackjack	(0)	114	1	2669432
13	5.3	0.0	0.0	chr3	120908373	120908392	(77387167)	+	(CGC)n	Simple_repeat	1	20	(0)	2669849
24	9.5	0.0	0.0	chr3	120908416	120908449	(77387110)	+	(TG)n	Simple_repeat	1	34	(0)	2669850
25	10.6	0.0	0.0	chr3	120908449	120908489	(77387070)	+	(GAGAGA)n	Simple_repeat	1	41	(0)	2669851
13	15.9	1.4	12.3	chr3	120908723	120908794	(77386765)	+	(GCGGCG)n	Simple_repeat	1	73	(0)	2669852
26	25.8	2.5	4.8	chr3	120908767	120908887	(77386672)	+	G-rich	Low_complexity	1	124	(0)	2669853
12	17.1	2.9	2.8	chr3	138608976	138609010	(59686549)	+	(CGCC)n	Simple_repeat	1	36	(0)	2697787
13	22.5	2.3	2.3	chr3	138609063	138609105	(59686454)	+	(GCG)n	Simple_repeat	1	44	(0)	2697788
19	10.8	2.3	4.4	chr3	138609240	138609284	(59686275)	+	G-rich	Low_complexity	1	44	(0)	2697789
271	27.1	9.2	0.8	chr3	138609349	138609478	(59686081)	C	L1ME4a	LINE/L1	(16)	6108	5967	2697790
95	3.0	0.0	2.8	chr3	138609534	138609641	(59685918)	+	(CT)n	Simple_repeat	1	108	(0)	2697791
2295	13.4	0.0	0.0	chr3	142554954	142555266	(55740293)	+	AluSq2	SINE/Alu	1	313	(0)	2704297
15	20.2	4.8	4.6	chr3	148991651	148991712	(49303847)	+	(CCG)n	Simple_repeat	1	65	(0)	2712870
22	25.3	0.0	1.7	chr3	155676512	155676599	(42618960)	+	(CA)n	Simple_repeat	1	86	(0)	2722802
2277	10.8	0.3	0.3	chr3	158055385	158055689	(40239870)	+	AluSz6	SINE/Alu	3	307	(5)	2726306
2117	11.5	5.8	2.2	chr3	161143581	161143944	(37151615)	C	THE1D	LTR/ERVL-MaLR	(3)	378	1	2730890
19316	14.2	5.2	4.6	chr3	161143945	161145132	(37150427)	+	MER41-int	LTR/ERV1	2558	4226	(2692)	2730887
10764	13.3	2.5	1.2	chr3	162435171	162437064	(35858495)	C	HUERS-P3b-int	LTR/ERV1	(2392)	5026	1788	2732602
3340	12.1	9.1	0.4	chr3	166721920	166722493	(31573066)	C	MER57-int	LTR/ERV1	(3767)	3770	2632	2737840
4722	14.2	3.3	1.4	chr3	166722476	166722564	(31572995)	C	MER57-int	LTR/ERV1	(4497)	3040	2955	2737840
21	0.0	0.0	0.0	chr3	168248611	168248633	(30046926)	+	(T)n	Simple_repeat	1	23	(0)	2739795
450	34.4	12.1	2.6	chr3	171878695	171879007	(26416552)	+	MamRTE1	LINE/RTE-BovB	3374	3720	(92)	2745229
4289	5.8	0.4	3.1	chr3	178265042	178265615	(20029944)	C	L1PA8A	LINE/L1	(28)	6103	5546	2754454
10125	12.1	2.1	1.2	chr3	180228974	180231217	(18064342)	+	MER61-int	LTR/ERV1	959	3572	(1645)	2757537
18	16.7	7.9	5.2	chr3	185498746	185498834	(12796725)	+	(GATCCCG)n	Simple_repeat	1	96	(0)	2766483
237	29.2	5.0	4.0	chr3	194213324	194213423	(4082136)	C	MIR3	SINE/MIR	(55)	153	53	2780750
906	21.3	5.2	4.8	chr4	2330031	2330281	(187884274)	+	L1MB8	LINE/L1	5914	6165	(13)	2791423
815	22.3	5.2	0.0	chr4	7083683	7083866	(183130689)	C	MER58A	DNA/hAT-Charlie	(28)	196	3	2799569
919	9.9	0.6	9.9	chr4	7083888	7084058	(183130497)	C	FRAM	SINE/Alu	(0)	176	22	2799570
477	30.1	15.2	6.9	chr4	7144147	7144427	(183070128)	+	L1ME4a	LINE/L1	5707	6013	(111)	2799684
591	25.9	7.6	0.6	chr4	7144558	7144716	(183069839)	C	MIR	SINE/MIR	(48)	214	44	2799686
48	26.8	3.1	4.4	chr4	15003782	15004003	(175210552)	+	(CCG)n	Simple_repeat	1	229	(0)	2811958
19	7.3	0.0	0.0	chr4	15004115	15004143	(175210412)	+	(GCG)n	Simple_repeat	1	29	(0)	2811959
6025	8.3	1.2	1.0	chr4	22563797	22564714	(167649841)	+	L1PA8A	LINE/L1	5214	6131	(0)	2824162
1648	30.2	0.5	1.4	chr4	22564735	22565498	(167649057)	+	L1MEc	LINE/L1	2196	2952	(3367)	2824161
15	14.2	10.6	0.0	chr4	26860767	26860813	(163353742)	+	(GCG)n	Simple_repeat	1	52	(0)	2831734
16	0.0	0.0	0.0	chr4	26860925	26860942	(163353613)	+	(T)n	Simple_repeat	1	18	(0)	2831735
26	23.2	0.0	4.8	chr4	26861040	26861122	(163353433)	+	(GGC)n	Simple_repeat	1	83	(0)	2831736
13	17.3	3.9	5.7	chr4	26861187	26861237	(163353318)	+	(GCTGC)n	Simple_repeat	1	53	(0)	2831737
20	0.0	0.0	0.0	chr4	26861696	26861717	(163352838)	+	(T)n	Simple_repeat	1	22	(0)	2831738
20570	14.9	4.7	3.3	chr4	33595667	33599147	(156615408)	+	HUERS-P3b-int	LTR/ERV1	3399	6939	(479)	2840990
409	30.1	7.4	0.6	chr4	40265840	40266016	(149948539)	C	MER91A	DNA/hAT-Tip100	(6)	190	1	2851622
863	17.6	1.2	0.2	chr4	49090455	49091234	(141123321)	+	ALR/Alpha	Satellite/centr	1	788	(0)	2864886
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
7847	20.4	6.1	2.5	chr4	49268140	49270555	(140944000)	+	L1M4	LINE/L1	3095	5610	(570)	2865041
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
1094	12.9	0.2	0.0	chr4	49322499	49324803	(140889752)	+	ACRO1	Satellite/acro	1	2308	(0)	2865130
765	23.2	4.1	11.8	chr4	49510094	49510415	(140704140)	C	L1MB8	LINE/L1	(43)	6135	5840	2865174
69	6.2	0.0	0.0	chr4	49510486	49510569	(140703986)	+	(TCCT)n	Simple_repeat	1	84	(0)	2865175
1130	13.8	0.3	0.1	chr4	49514156	49515857	(140698698)	+	ACRO1	Satellite/acro	1	1705	(0)	2865184
406	18.9	2.2	0.5	chr4	49573746	49573848	(140640707)	+	MSTA	LTR/ERVL-MaLR	4	113	(262)	2865274
271	21.9	1.9	0.4	chr4	49573937	49574021	(140640534)	+	THE1D-int	LTR/ERVL-MaLR	959	1064	(587)	2865275
839	22.6	15.8	2.1	chr4	49573984	49574223	(140640332)	C	THE1D-int	LTR/ERVL-MaLR	(398)	1233	955	2865276
867	26.6	5.5	4.6	chr4	49574228	49574534	(140640021)	+	MSTA	LTR/ERVL-MaLR	76	385	(43)	2865274
285	26.1	0.0	1.8	chr4	49577533	49577634	(140636921)	C	HSAT5	Satellite	(1)	100	1	2865283
639	7.7	0.0	0.6	chr4	49577855	49577952	(140636603)	C	HSAT5	Satellite	(3)	97	1	2865284
21	18.9	2.1	0.0	chr4	52038234	52038281	(138176274)	+	(GCC)n	Simple_repeat	1	49	(0)	2865622
204	28.9	0.0	7.8	chr4	56655346	56655435	(133559120)	+	MIR3	SINE/MIR	110	192	(16)	2873016
13	21.3	2.2	2.2	chr4	57109922	57109966	(133104589)	+	(CGCGGCT)n	Simple_repeat	1	46	(0)	2873982
17	19.4	2.4	0.0	chr4	57110266	57110306	(133104249)	+	GA-rich	Low_complexity	1	42	(0)	2873983
49	25.2	3.5	0.0	chr4	61199939	61200082	(129014473)	+	GA-rich	Low_complexity	1	149	(0)	2879115
23	28.9	0.0	4.3	chr4	61200502	61200593	(129013962)	+	(CGC)n	Simple_repeat	1	92	(0)	2879116
741	31.9	8.8	1.0	chr4	64492093	64492469	(125722086)	+	L2a	LINE/L2	2827	3237	(189)	2883223
609	21.6	8.5	3.0	chr4	77156265	77156464	(113058091)	C	L1MC5a	LINE/L1	(2)	2775	2564	2900479
353	18.2	0.0	0.0	chr4	81870089	81870154	(108344401)	+	MLT1A0	LTR/ERVL-MaLR	1	66	(299)	2906780
1287	22.0	1.4	13.3	chr4	81870155	81870348	(108344207)	+	MER101	LTR/ERV1	11	185	(289)	2906781
7837	17.8	10.6	4.8	chr4	81870349	81871920	(108342635)	+	MER52A	LTR/ERV1	1	1684	(71)	2906782
4296	14.6	4.9	6.5	chr4	87697307	87698424	(102516131)	C	MER52C	LTR/ERV1	(0)	1278	15	2915939
1274	20.9	10.2	13.7	chr4	87698427	87698669	(102515886)	C	L1ME2	LINE/L1	(215)	6122	5847	2915938
13	7.2	6.5	3.0	chr4	87975710	87975740	(102238815)	+	(CAG)n	Simple_repeat	1	33	(0)	2916313
1432	13.0	0.0	2.3	chr4	88341812	88342032	(101872523)	+	MSTB1	LTR/ERVL-MaLR	1	216	(216)	2917006
13	27.5	2.1	0.0	chr4	89057829	89057876	(101156679)	+	(TATTTT)n	Simple_repeat	1	49	(0)	2918066
23364	8.4	1.1	0.3	chr4	89057880	89061579	(101152976)	C	L1PA8A	LINE/L1	(85)	6231	2499	2918067
26999	12.5	2.5	4.4	chr4	98158268	98159957	(92054598)	+	HUERS-P1-int	LTR/ERV1	1247	2899	(3364)	2929737
2326	10.3	0.3	1.3	chr4	98159958	98160268	(92054287)	+	AluSp	SINE/Alu	1	308	(5)	2929741
467	32.0	8.5	9.0	chr4	98512756	98513604	(91700951)	C	L2c	LINE/L2	(0)	3387	2547	2930260
13	14.7	0.0	3.1	chr4	103019725	103019756	(87194799)	+	G-rich	Low_complexity	1	32	(0)	2936488
10405	10.3	2.1	6.4	chr4	106337626	106339276	(83875279)	+	THE1B-int	LTR/ERVL-MaLR	1	1580	(0)	2940684
2281	9.9	0.0	0.0	chr4	109063235	109063517	(81151038)	+	AluSx	SINE/Alu	15	297	(15)	2944422
680	20.2	2.6	0.0	chr4	109063562	109063675	(81150880)	+	FLAM_C	SINE/Alu	3	119	(24)	2944423
11742	10.3	0.5	0.5	chr4	112836396	112838026	(77376529)	+	THE1D-int	LTR/ERVL-MaLR	1	1631	(0)	2949976
10390	8.5	0.9	0.3	chr4	114892774	114894996	(75319559)	C	L1PA8A	LINE/L1	(1)	6130	3899	2952605
17	12.1	5.6	0.0	chr4	115113815	115113850	(75100705)	+	(GCT)n	Simple_repeat	1	38	(0)	2952865
28956	12.3	3.4	1.9	chr4	117590190	117595851	(72618704)	C	MER57-int	LTR/ERV1	(0)	7537	1073	2955891
419	35.8	12.8	3.8	chr4	118919461	118920420	(71294135)	C	L2c	LINE/L2	(10)	3377	2286	2957716
197	40.8	7.5	1.1	chr4	121938330	121938515	(68276040)	+	L2	LINE/L2	2539	2737	(682)	2961831
581	28.7	9.7	2.1	chr4	121938537	121938765	(68275790)	C	MIRb	SINE/MIR	(6)	256	4	2961832
363	24.1	20.4	0.0	chr4	127788474	127788610	(62425945)	+	MER103C	DNA/hAT-Charlie	126	297	(0)	2969545
970	19.0	1.4	6.5	chr4	127788619	127788849	(62425706)	+	MER20	DNA/hAT-Charlie	1	219	(0)	2969546
21	11.0	2.6	0.0	chr4	129093794	129093832	(61120723)	+	(AAAC)n	Simple_repeat	1	40	(0)	2971744
27140	12.7	2.2	4.1	chr4	131286850	131290697	(58923858)	C	HUERS-P1-int	LTR/ERV1	(1699)	4564	814	2974454
1532	18.7	6.4	7.3	chr4	139903728	139904137	(50310418)	C	MLT1A1	LTR/ERVL-MaLR	(2)	406	1	2985424
773	15.3	9.1	5.1	chr4	139904138	139904257	(50310298)	+	MLT1B	LTR/ERVL-MaLR	254	387	(3)	2985423
670	27.6	3.3	0.6	chr4	143477154	143477328	(46737227)	C	LTR33	LTR/ERVL	(137)	378	199	2990362
368	28.5	6.8	0.7	chr4	143477342	143477479	(46737076)	C	LTR33	LTR/ERVL	(368)	147	1	2990362
2050	10.9	6.0	0.0	chr4	148300589	148300871	(41913684)	C	AluSp	SINE/Alu	(12)	301	1	2996954
3304	19.3	1.5	4.9	chr4	148300872	148301395	(41913160)	+	MER61-int	LTR/ERV1	3910	4415	(2773)	2996953
6975	18.0	4.2	5.8	chr4	154949756	154954111	(35260444)	C	MER41-int	LTR/ERV1	(1051)	4895	406	3006743
12	12.2	3.7	0.0	chr4	155667579	155667605	(34546950)	+	GA-rich	Low_complexity	1	28	(0)	3007758
500	31.6	3.8	16.1	chr4	155818437	155818590	(34395965)	C	L2a	LINE/L2	(0)	3426	3276	3007964
288	6.8	26.2	0.0	chr4	155818591	155818649	(34395906)	C	MADE1	DNA/TcMar-Mariner	(0)	80	1	3007965
500	31.6	3.8	16.1	chr4	155818650	155818952	(34395603)	C	L2a	LINE/L2	(0)	3275	2977	3007964
3148	15.5	5.9	2.3	chr4	160489706	160490604	(29723951)	+	MER41-int	LTR/ERV1	1846	3100	(3163)	3014143
9885	19.4	4.3	5.5	chr4	163037572	163038393	(27176162)	+	L1M1	LINE/L1	1397	1964	(5601)	3017518
2352	6.3	0.3	1.4	chr4	163038394	163038716	(27175839)	C	AluSp	SINE/Alu	(0)	313	1	3017519
5385	16.8	8.3	2.6	chr4	170514921	170516040	(19698515)	C	HERV35I-int	LTR/ERV1	(427)	6491	5370	3027844
4694	18.8	3.2	3.5	chr4	170516040	170516595	(19697960)	+	HERV35I-int	LTR/ERV1	3020	3591	(3327)	3027846
1471	23.8	8.0	2.9	chr4	183492121	183492594	(6721961)	C	L1MEf	LINE/L1	(5259)	983	378	3045041
2198	17.9	11.6	0.2	chr4	183492605	183493053	(6721502)	C	LTR53	LTR/ERVL	(11)	508	2	3045054
5404	8.9	0.4	0.0	chr4	185319876	185320586	(4893969)	+	L1PA8A	LINE/L1	5392	6148	(15)	3048097
14510	13.7	3.8	2.8	chr4	188930440	188933260	(1281295)	+	HUERS-P1-int	LTR/ERV1	2113	4899	(1047)	3053286
398	23.5	0.7	2.2	chr4	190022652	190022790	(191765)	+	LSAU	Satellite	2	138	(360)	3054526
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
949	27.2	5.1	4.2	chr5	3659659	3659988	(177878271)	C	L1MD2	LINE/L1	(7)	6352	6020	3058563
1059	26.2	3.1	1.7	chr5	3660215	3660501	(177877758)	C	L1MD1	LINE/L1	(168)	6074	5784	3058564
5661	17.4	4.7	4.8	chr5	32339126	32340078	(149198181)	C	MER57-int	LTR/ERV1	(3711)	3826	2773	3096642
2064	13.2	0.7	0.7	chr5	32340079	32340373	(149197886)	C	AluSx1	SINE/Alu	(17)	295	1	3096648
1581	15.7	4.0	5.7	chr5	34182319	34182469	(147355790)	+	AluJo	SINE/Alu	126	275	(37)	3099474
53	0.0	2.0	0.0	chr5	34182475	34182525	(147355734)	+	(AAAT)n	Simple_repeat	1	52	(0)	3099476
4753	15.6	5.3	1.5	chr5	51779971	51781384	(129756875)	C	MER57-int	LTR/ERV1	(3900)	3637	1399	3118157
747	13.3	0.0	0.8	chr5	58379282	58379402	(123158857)	+	MER41-int	LTR/ERV1	1988	2107	(4156)	3128039
1023	13.7	1.5	0.2	chr5	58379399	58379576	(123158683)	+	MER41-int	LTR/ERV1	2167	2319	(3627)	3128039
1807	9.1	3.0	1.2	chr5	58379547	58379803	(123158456)	+	MER41-int	LTR/ERV1	2587	2848	(3098)	3128039
12227	12.0	2.3	1.1	chr5	58379794	58382192	(123156067)	+	MER41-int	LTR/ERV1	1855	5946	(0)	3128040
1748	22.4	1.8	2.6	chr5	60670838	60671296	(120866963)	+	ERV3-16A3_I-int	LTR/ERVL	4693	5147	(79)	3131146
995	23.1	4.3	6.1	chr5	60671414	60671772	(120866487)	+	LTR16B1	LTR/ERVL	125	476	(4)	3131147
2177	10.8	0.7	1.4	chr5	65387929	65388224	(116150035)	+	AluSx1	SINE/Alu	1	294	(18)	3137747
20	18.8	3.6	1.7	chr5	78984876	78984931	(102553328)	+	(GCG)n	Simple_repeat	1	58	(0)	3158884
13	10.0	0.0	0.0	chr5	78985153	78985174	(102553085)	+	(CAG)n	Simple_repeat	1	22	(0)	3158885
20	15.9	5.1	6.0	chr5	79514225	79514303	(102023956)	+	(GCCGCGG)n	Simple_repeat	1	83	(0)	3159873
472	26.1	3.2	1.6	chr5	84437577	84437756	(97100503)	+	L1MC2	LINE/L1	37	164	(5881)	3167271
6418	13.3	1.1	4.6	chr5	84437806	84438926	(97099333)	C	Tigger1	DNA/TcMar-Tigger	(0)	2418	1338	3167272
3039	17.2	1.4	2.1	chr5	97465512	97466241	(84072018)	C	LTR25-int	LTR/ERV1	(2807)	4381	3773	3183990
2194	9.4	3.0	0.0	chr5	98843294	98843581	(82694678)	+	AluSq2	SINE/Alu	2	298	(15)	3185629
10302	16.1	3.6	4.0	chr5	98843582	98845415	(82692844)	C	LTR25-int	LTR/ERV1	(391)	4826	2166	3185626
24643	13.0	2.8	1.9	chr5	100158026	100162369	(81375890)	C	MER57-int	LTR/ERV1	(0)	7537	3665	3187381
13	20.8	7.8	3.6	chr5	102296361	102296437	(79241822)	+	(AGCCTCC)n	Simple_repeat	1	83	(0)	3189947
1675	12.5	0.9	0.4	chr5	106535533	106535764	(75002495)	C	AluSc	SINE/Alu	(27)	282	50	3195261
19	13.9	8.1	4.5	chr5	107632100	107632174	(73906085)	+	(TC)n	Simple_repeat	1	77	(0)	3196593
14	9.3	0.0	0.0	chr5	107672098	107672120	(73866139)	+	(GCA)n	Simple_repeat	1	23	(0)	3196632
283	31.4	10.2	4.6	chr5	108727825	108728018	(72810241)	C	MIRb	SINE/MIR	(58)	210	5	3198049
12204	14.5	2.0	5.8	chr5	113609345	113611347	(67926912)	+	HUERS-P3b-int	LTR/ERV1	3402	5317	(2101)	3204530
10051	4.6	10.1	0.8	chr5	118998460	118999712	(62538547)	+	SVA_B	Retroposon/SVA	2	1383	(0)	3211615
7159	12.5	5.0	11.1	chr5	118999713	119000000	(62538259)	C	MER41-int	LTR/ERV1	(3768)	1449	1282	3211610
2577	13.4	1.2	0.2	chr5	119000001	119000405	(62537854)	C	MER41-int	LTR/ERV1	(4338)	3199	2791	3211616
3396	14.6	1.9	1.9	chr5	124229381	124229935	(57308324)	+	MER41E	LTR/ERV1	1	559	(36)	3218390
4812	15.9	8.2	1.1	chr5	124229936	124230769	(57307490)	+	LTR1D1	LTR/ERV1	1	899	(0)	3218391
1901	18.2	11.0	3.4	chr5	124910509	124910986	(56627273)	+	MER101B	LTR/ERV1	1	519	(51)	3219353
13	23.2	3.9	1.9	chr5	127073502	127073553	(54464706)	+	(CGCCCCA)n	Simple_repeat	1	54	(0)	3222379
15	10.8	3.3	0.0	chr5	131263905	131263934	(50274325)	+	(GGCGGG)n	Simple_repeat	1	31	(0)	3227655
14	27.8	1.4	4.2	chr5	131264260	131264329	(50273930)	+	G-rich	Low_complexity	1	71	(0)	3227656
14	18.8	6.0	1.9	chr5	134845910	134845959	(46692300)	+	(CGCGTG)n	Simple_repeat	1	53	(0)	3233498
21	18.5	0.0	0.0	chr5	139561527	139561569	(41976690)	+	(GGC)n	Simple_repeat	1	43	(0)	3241047
21	8.1	5.1	0.0	chr5	139561727	139561765	(41976494)	+	(CCCCGT)n	Simple_repeat	1	41	(0)	3241048
18	25.5	1.6	1.6	chr5	139561766	139561788	(41976471)	+	(CCCCGC)n	Simple_repeat	1	63	(0)	3241049
201	30.4	0.0	0.0	chr5	141702146	141702201	(39836058)	+	MIRc	SINE/MIR	109	164	(104)	3244438
234	21.9	3.9	0.4	chr5	149434232	149434304	(32103955)	C	L2b	LINE/L2	(49)	3377	3288	3257728
344	27.8	5.9	9.5	chr5	149565197	149565407	(31972852)	+	L2c	LINE/L2	3183	3385	(2)	3258003
26	28.6	3.4	2.4	chr5	159099239	159099357	(22438902)	+	(CCG)n	Simple_repeat	1	123	(0)	3275545
972	31.1	3.5	6.8	chr5	159945383	159945736	(21592523)	C	L2a	LINE/L2	(283)	3143	2820	3277033
2679	5.2	0.0	0.0	chr5	159945737	159946046	(21592213)	C	AluY	SINE/Alu	(1)	310	1	3277035
286	35.9	3.0	2.2	chr5	177022314	177022447	(4515812)	+	MIRb	SINE/MIR	63	197	(71)	3306450
2642	3.9	0.7	0.3	chr5	177599346	177599654	(3938605)	C	AluY	SINE/Alu	(0)	311	2	3307713
471	32.0	6.9	3.0	chr5	177599655	177599709	(3938550)	C	MIR	SINE/MIR	(187)	75	17	3307712
195	22.5	19.2	0.0	chr5	177599872	177599951	(3938308)	+	MIR3	SINE/MIR	30	128	(80)	3307714
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
19	9.8	0.0	2.9	chr5	179550513	179550547	(1987712)	+	(GCCC)n	Simple_repeat	1	35	(0)	3311065
24	26.9	0.0	0.0	chr5	179550600	179550667	(1987592)	+	G-rich	Low_complexity	1	68	(0)	3311066
13	15.7	9.3	0.0	chr5	179550804	179550846	(1987413)	+	(GCGCGCT)n	Simple_repeat	1	47	(0)	3311067
2176	7.3	2.7	3.6	chr5	180090667	180090969	(1447290)	C	AluSz	SINE/Alu	(12)	300	1	3312066
11	27.9	1.6	4.8	chr5	180619104	180619165	(919094)	+	(GGCGGCG)n	Simple_repeat	1	63	(0)	3312984
17	26.4	4.6	1.5	chr5	180619152	180619216	(919043)	+	(GC)n	Simple_repeat	1	68	(0)	3312985
37	14.8	4.2	3.0	chr6	1382035	1382129	(169423850)	+	(GCGGAG)n	Simple_repeat	1	99	(0)	3316028
2149	12.0	3.6	0.0	chr6	1810291	1810581	(168995398)	C	AluSx	SINE/Alu	(9)	303	2	3316605
237	26.0	0.0	0.0	chr6	3671723	3671772	(167134207)	+	MLT1L	LTR/ERVL-MaLR	558	607	(3)	3319266
194	28.4	3.9	1.3	chr6	3672110	3672184	(167133795)	C	MIRb	SINE/MIR	(9)	259	183	3319267
24585	6.6	1.3	0.5	chr6	3672188	3678310	(167127669)	C	L1PA6	LINE/L1	(0)	6327	177	3319268
299	31.9	7.2	0.0	chr6	5004892	5005007	(165800972)	+	Charlie16a	DNA/hAT-Charlie	4	128	(214)	3321337
206	22.4	8.0	7.2	chr6	12059807	12059885	(158746094)	+	L2b	LINE/L2	3303	3383	(4)	3332145
223	36.8	9.3	4.2	chr6	13689611	13689823	(157116156)	+	L2c	LINE/L2	2977	3201	(186)	3334698
636	20.3	3.0	0.0	chr6	13689987	13690114	(157115865)	+	Tigger3c	DNA/TcMar-Tigger	470	601	(1)	3334699
3421	12.8	0.9	2.3	chr6	13951097	13951608	(156854371)	C	MER41-int	LTR/ERV1	(3093)	2853	2349	3335208
5093	15.7	1.3	3.3	chr6	13951598	13952524	(156853455)	C	MER41-int	LTR/ERV1	(4820)	1126	219	3335208
681	30.7	24.6	2.7	chr6	15577089	15578552	(155227427)	C	L2a	LINE/L2	(355)	3064	1176	3338104
1663	10.2	13.4	2.6	chr6	17303045	17303310	(153502669)	+	AluSc	SINE/Alu	1	299	(10)	3340888
29552	10.6	2.7	1.1	chr6	18723256	18727838	(152078141)	+	MER57-int	LTR/ERV1	2874	7531	(6)	3343491
56	0.0	0.0	0.0	chr6	24645841	24645888	(146160091)	+	(AC)n	Simple_repeat	1	48	(0)	3352298
671	1.2	0.0	2.4	chr6	26305489	26305570	(144500409)	C	tRNA-Ser-AGY	tRNA	(2)	83	4	3354981
732	1.2	0.0	0.0	chr6	26312596	26312677	(144493302)	C	tRNA-Ser-TCA_	tRNA	(3)	82	1	3354998
651	0.0	0.0	0.0	chr6	26313124	26313195	(144492784)	C	tRNA-Met-i	tRNA	(3)	72	1	3354999
2117	11.6	0.7	0.0	chr6	27684096	27684397	(143121582)	C	AluSx1	SINE/Alu	(8)	304	1	3357368
679	0.0	0.0	0.0	chr6	27684695	27684768	(143121211)	C	tRNA-Thr-ACY_	tRNA	(3)	74	1	3357369
261	28.9	35.8	0.5	chr6	28208067	28208258	(142597721)	+	MIR	SINE/MIR	3	262	(0)	3358246
214	30.8	0.0	0.0	chr6	30213982	30214046	(140591933)	C	MIRc	SINE/MIR	(114)	154	90	3361269
4351	16.4	1.0	4.2	chr6	32249101	32249620	(138556359)	+	HERV35I-int	LTR/ERV1	2848	3341	(3577)	3364629
1950	13.8	4.3	0.3	chr6	32249621	32249909	(138556070)	C	AluJo	SINE/Alu	(10)	302	2	3364630
248	24.1	11.1	4.6	chr6	35257629	35257737	(135548242)	+	UCON132b	DNA/hAT-Tip100	1	189	(116)	3369988
27	3.5	0.0	0.0	chr6	35257947	35257976	(135548003)	+	(CTTTTT)n	Simple_repeat	1	30	(0)	3369989
2188	7.3	0.7	1.8	chr6	35257977	35258262	(135547717)	C	AluSx3	SINE/Alu	(28)	283	1	3369990
16	12.4	6.9	7.8	chr6	39792379	39792450	(131013529)	+	(AGCGCG)n	Simple_repeat	1	77	(0)	3378541
29	24.1	5.8	1.6	chr6	41546257	41546376	(129259603)	+	(CTCG)n	Simple_repeat	1	127	(0)	3381373
12	20.3	4.1	3.9	chr6	41546422	41546470	(129259509)	+	(GCCG)n	Simple_repeat	1	51	(0)	3381374
1807	12.7	3.3	3.3	chr6	42891299	42891605	(127914374)	C	AluSz	SINE/Alu	(5)	307	1	3384285
379	21.6	2.9	0.0	chr6	43284654	43284755	(127521224)	+	Charlie16a	DNA/hAT-Charlie	123	227	(115)	3385061
1885	13.5	0.4	0.4	chr6	66210854	66211127	(104594852)	+	AluSp	SINE/Alu	39	312	(1)	3414002
3251	19.9	3.0	1.8	chr6	66211128	66211509	(104594470)	+	LTR25-int	LTR/ERV1	4060	4414	(2774)	3413999
7113	13.2	6.2	2.5	chr6	72146206	72147831	(98658148)	C	MER57-int	LTR/ERV1	(2004)	5184	1977	3421505
22	21.6	3.3	5.4	chr6	79077760	79077849	(91728130)	+	(CCGCGG)n	Simple_repeat	1	93	(0)	3430770
18	10.8	0.0	0.0	chr6	79078201	79078230	(91727749)	+	(GGA)n	Simple_repeat	1	30	(0)	3430771
13	21.1	2.6	0.0	chr6	89081020	89081057	(81724922)	+	(ACCCCGG)n	Simple_repeat	1	39	(0)	3444134
313	34.0	0.0	2.0	chr6	92048029	92048127	(78757852)	+	MER131	DNA?	7	103	(112)	3448444
1252	30.6	13.2	0.5	chr6	93100759	93101364	(77704615)	C	L2a	LINE/L2	(52)	3374	2660	3449674
21	14.0	0.0	7.3	chr6	93101387	93101441	(77704538)	+	(ATTC)n	Simple_repeat	1	55	(0)	3449676
27281	10.1	3.6	2.5	chr6	100894417	100894884	(69911095)	+	MER61-int	LTR/ERV1	1144	1608	(3609)	3459612
12193	14.4	3.4	2.5	chr6	101024666	101027931	(69778048)	+	MER61-int	LTR/ERV1	1961	4415	(2773)	3459781
24960	7.0	0.4	0.0	chr6	105415012	105421154	(65384825)	+	L1PA5	LINE/L1	174	6327	(0)	3465388
581	16.2	1.8	5.1	chr6	110165729	110165845	(60640134)	+	MER5A1	DNA/hAT-Charlie	12	124	(42)	3473238
16739	13.7	1.5	4.5	chr6	111164777	111166352	(59639627)	C	LTR25-int	LTR/ERV1	(2700)	4488	1633	3475139
981	25.4	8.2	6.1	chr6	112015810	112016386	(58789593)	C	L2a	LINE/L2	(239)	3187	2592	3476527
205	23.2	3.5	1.8	chr6	112218363	112218419	(58587560)	C	MER5B	DNA/hAT-Charlie	(117)	61	4	3476790
180	22.7	0.0	2.2	chr6	112218426	112218470	(58587509)	+	MIR	SINE/MIR	216	259	(3)	3476791
15	17.7	2.6	0.0	chr6	112253756	112253793	(58552186)	+	(TCAACTT)n	Simple_repeat	1	39	(0)	3476841
37	21.7	0.0	0.0	chr6	112254337	112254409	(58551570)	+	(CT)n	Simple_repeat	1	73	(0)	3476842
18	12.2	0.0	0.0	chr6	115851959	115851985	(54953994)	+	(A)n	Simple_repeat	1	27	(0)	3481807
21015	12.1	1.3	1.5	chr6	115852005	115855024	(54950955)	+	L1PA7	LINE/L1	4	2956	(3505)	3481808
4454	13.3	6.9	2.3	chr6	117476915	117477735	(53328244)	C	MER57-int	LTR/ERV1	(3900)	3637	2777	3483941
13688	11.4	6.5	3.1	chr6	118603120	118605731	(52200248)	C	MER41-int	LTR/ERV1	(799)	5147	2125	3485384
21	22.8	1.4	4.1	chr6	118935172	118935243	(51870736)	+	G-rich	Low_complexity	1	73	(0)	3485880
12017	12.4	5.7	2.5	chr6	119236728	119237363	(51568616)	+	Tigger1	DNA/TcMar-Tigger	1446	2071	(347)	3486334
1949	30.9	7.4	3.3	chr6	122766587	122767628	(48038351)	+	L1M5	LINE/L1	3936	5015	(1131)	3490824
807	16.1	0.0	2.9	chr6	122767629	122767765	(48038214)	+	FLAM_C	SINE/Alu	1	133	(10)	3490825
2400	17.9	10.3	0.6	chr6	124856588	124857053	(45948926)	+	MLT2B1	LTR/ERVL	5	520	(0)	3493489
16	11.3	4.8	4.5	chr6	128883311	128883352	(41922627)	+	(GCA)n	Simple_repeat	1	44	(0)	3498755
2681	30.8	13.9	2.3	chr6	133805882	133806719	(36999260)	C	L2a	LINE/L2	(1118)	2301	1374	3505720
13	7.5	0.0	8.8	chr6	133817500	133817533	(36988446)	+	A-rich	Low_complexity	1	34	(0)	3505741
1009	15.9	0.0	0.0	chr6	133817726	133817876	(36988103)	+	AluJb	SINE/Alu	147	297	(15)	3505742
19	14.9	0.0	0.0	chr6	134318144	134318174	(36487805)	+	(T)n	Simple_repeat	1	31	(0)	3506659
21	5.3	7.7	0.0	chr6	135909671	135909709	(34896270)	+	(TATATTT)n	Simple_repeat	1	42	(0)	3509110
2993	14.2	9.7	0.4	chr6	140191758	140192474	(30613505)	+	MER41-int	LTR/ERV1	2163	2946	(3000)	3515770
4458	12.3	5.0	0.9	chr6	142575800	142576547	(28229432)	+	MER41-int	LTR/ERV1	2167	2946	(3000)	3518686
758	16.9	5.1	0.0	chr6	142923630	142923759	(27882220)	C	MER45A	DNA/hAT-Tip100	(41)	137	1	3519158
14	8.5	0.0	3.7	chr6	142946113	142946139	(27859840)	+	(GAGG)n	Simple_repeat	1	27	(0)	3519179
19	19.3	1.5	6.0	chr6	142946358	142946423	(27859556)	+	GA-rich	Low_complexity	1	67	(0)	3519180
2230	12.5	0.0	0.7	chr6	143213489	143213816	(27592163)	C	AluSx1	SINE/Alu	(0)	312	1	3519542
16	7.5	3.6	0.0	chr6	143450810	143450837	(27355142)	+	(GCG)n	Simple_repeat	1	29	(0)	3519895
320	27.7	12.7	4.2	chr6	143564764	143564906	(27241073)	+	MamRTE1	LINE/RTE-BovB	3612	3768	(44)	3520090
11	14.1	0.0	8.1	chr6	144007925	144007961	(26798018)	+	(GGACCC)n	Simple_repeat	1	37	(0)	3520695
449	33.3	0.7	2.0	chr6	144266496	144266642	(26539337)	C	MIR3	SINE/MIR	(6)	202	58	3521135
19	21.4	0.0	0.0	chr6	150069234	150069278	(20736701)	+	(GCCCC)n	Simple_repeat	1	45	(0)	3529610
203	27.5	18.5	0.0	chr6	150069424	150069517	(20736462)	C	MIR1_Amn	SINE/MIR	(70)	192	81	3529611
2084	27.8	6.8	3.6	chr6	150076450	150077402	(20728577)	+	L1MEd	LINE/L1	463	1389	(823)	3529623
808	22.7	9.0	0.5	chr6	150303387	150303590	(20502389)	+	MER58A	DNA/hAT-Charlie	2	224	(0)	3530003
557	25.3	15.7	1.3	chr6	150303693	150303920	(20502059)	+	MER102b	DNA/hAT-Charlie	10	276	(65)	3530004
311	23.2	1.2	0.0	chr6	150304058	150304139	(20501840)	+	Charlie19a	DNA/hAT-Charlie	142	224	(162)	3530005
1149	21.6	0.4	1.3	chr6	150509304	150509528	(20296451)	+	MER4D	LTR/ERV1	673	895	(8)	3530328
2344	11.0	0.0	0.0	chr6	151044293	151044600	(19761379)	C	AluSx3	SINE/Alu	(3)	308	1	3531218
13774	15.6	3.9	3.0	chr6	155611577	155615313	(15190666)	C	MER41-int	LTR/ERV1	(2012)	5176	744	3538349
1007	11.7	0.0	0.0	chr6	158392795	158392947	(12413032)	C	AluSc	SINE/Alu	(0)	309	152	3542460
1879	13.2	1.1	0.0	chr6	158798659	158798923	(12007056)	C	AluSx1	SINE/Alu	(39)	273	6	3543138
345	22.7	9.2	1.5	chr6	158799198	158799327	(12006652)	C	MER5A	DNA/hAT-Charlie	(8)	181	41	3543139
15	12.4	5.7	0.0	chr6	158869856	158869890	(11936089)	+	G-rich	Low_complexity	1	37	(0)	3543275
2070	15.4	0.3	0.0	chr6	159662795	159663099	(11142880)	C	AluSq	SINE/Alu	(7)	306	1	3544401
3796	8.4	0.4	3.1	chr6	159663100	159663206	(11142773)	+	L1PBa1	LINE/L1	6408	6507	(360)	3544396
255	13.9	0.0	0.0	chr6	159663209	159663244	(11142735)	C	Alu	SINE/Alu	(97)	36	1	3544402
661	6.3	9.5	0.0	chr6	159663248	159663342	(11142637)	+	L1PB1	LINE/L1	5687	5791	(360)	3544403
26	9.9	5.4	1.7	chr6	159693321	159693376	(11112603)	+	(CCGCC)n	Simple_repeat	1	59	(0)	3544447
8333	0.4	0.0	0.0	chr6	161982232	161983919	(8822060)	+	L1HS	LINE/L1	4468	6155	(0)	3547522
260	22.8	7.3	5.6	chr6	161984125	161984231	(8821748)	+	MLT1K	LTR/ERVL-MaLR	371	479	(116)	3547523
2208	12.2	2.0	0.0	chr6	161984254	161984541	(8821438)	C	AluSx	SINE/Alu	(8)	304	11	3547524
15	13.2	2.9	2.8	chr6	162727299	162727333	(8078646)	+	(GGC)n	Simple_repeat	1	36	(0)	3548581
15	4.8	0.0	0.0	chr6	165309246	165309267	(5496712)	+	(CCT)n	Simple_repeat	1	22	(0)	3551810
1121	21.8	10.2	3.7	chr6	165309814	165310113	(5495866)	+	MER2	DNA/TcMar-Tigger	1	322	(23)	3551811
2112	21.9	6.0	3.1	chr6	165552274	165552819	(5253160)	+	MER68	LTR/ERVL	1	563	(0)	3552080
1577	16.0	6.7	2.0	chr6	165760957	165761269	(5044710)	+	MER61B	LTR/ERV1	4	427	(0)	3552353
23	18.5	0.0	0.0	chr6	167861070	167861118	(2944861)	+	(CCTCC)n	Simple_repeat	1	49	(0)	3554891
13	26.8	2.2	0.0	chr6	170584448	170584492	(221487)	+	(CCCG)n	Simple_repeat	1	46	(0)	3557615
54	30.5	0.0	2.4	chr7	6895025	6895193	(152450780)	+	A-rich	Low_complexity	1	169	(0)	3570349
48	26.4	1.1	6.2	chr7	6895194	6895206	(152450767)	+	GA-rich	Low_complexity	8	180	(0)	3570350
28	12.4	0.0	0.0	chr7	11831828	11831880	(147514093)	+	(AGC)n	Simple_repeat	1	53	(0)	3576680
31061	11.3	5.7	4.3	chr7	22802383	22804089	(136541884)	+	MER61-int	LTR/ERV1	19	1841	(3376)	3591237
1448	12.0	15.5	0.4	chr7	23272847	23273087	(136072886)	C	AluJb	SINE/Alu	(15)	297	14	3592027
292	35.2	1.5	1.5	chr7	26509187	26509316	(132836657)	C	L2c	LINE/L2	(1)	3386	3257	3597168
12	13.7	6.2	0.0	chr7	33761734	33761765	(125584208)	+	(GGTCTG)n	Simple_repeat	1	34	(0)	3608347
3444	30.0	5.4	1.9	chr7	37655667	37656977	(121688996)	C	ERVL-E-int	LTR/ERVL	(523)	5144	3786	3614064
13966	10.8	4.3	7.4	chr7	41748723	41749480	(117596493)	C	MER41-int	LTR/ERV1	(3092)	2854	2168	3620283
6569	19.1	3.6	4.6	chr7	42958608	42960135	(116385838)	C	HERV35I-int	LTR/ERV1	(2879)	4039	2198	3621896
14382	10.2	3.5	1.3	chr7	43666199	43669213	(115676760)	+	HUERS-P3b-int	LTR/ERV1	2661	7187	(1)	3622965
4100	20.1	11.9	9.1	chr7	48890157	48891735	(110454238)	+	MER61-int	LTR/ERV1	11	1640	(3577)	3630448
3365	19.6	6.4	6.2	chr7	49986362	49987723	(109358250)	+	MER61-int	LTR/ERV1	3752	4230	(2958)	3631833
53	0.0	2.0	0.0	chr7	49987724	49987772	(109358201)	+	(TG)n	Simple_repeat	1	50	(0)	3631834
17181	11.7	2.4	1.9	chr7	49987773	49990574	(109355399)	+	MER61-int	LTR/ERV1	1983	4623	(594)	3631833
609	28.7	0.6	1.1	chr7	51605887	51606062	(107739911)	C	MER5B	DNA/hAT-Charlie	(0)	178	4	3633880
367	17.7	3.1	0.0	chr7	57495408	57495469	(101850504)	+	AluYj4	SINE/Alu	226	289	(22)	3642546
94	10.7	1.1	1.1	chr7	57495470	57495644	(101850329)	+	(GGAAT)n	Simple_repeat	1	177	(0)	3642547
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
5041	17.5	9.8	5.8	chr7	64196093	64197477	(95148496)	+	MER41-int	LTR/ERV1	2129	3916	(2030)	3645970
2178	14.7	0.6	0.8	chr7	64562251	64562607	(94783366)	+	MER57E3	LTR/ERV1	132	487	(0)	3646433
1202	9.0	0.0	0.7	chr7	65919776	65919919	(93426054)	+	AluYh3a3	SINE/Alu	1	143	(149)	3648788
407	27.1	2.2	13.5	chr7	65919922	65920154	(93425819)	+	L2a	LINE/L2	2840	3050	(376)	3648777
497	33.1	2.1	1.2	chr7	65920196	65920383	(93425590)	+	L2a	LINE/L2	3189	3423	(3)	3648777
31	2.2	4.0	3.9	chr7	69598310	69598359	(89747614)	+	(CGAG)n	Simple_repeat	1	52	(0)	3657061
12	18.3	0.0	7.0	chr7	70631267	70631312	(88714661)	+	G-rich	Low_complexity	1	42	(0)	3658594
12	20.2	0.0	6.7	chr7	73738869	73738913	(85607060)	+	(CCGCC)n	Simple_repeat	1	45	(0)	3665345
48	0.0	0.0	0.0	chr7	87628585	87628625	(71717348)	+	(GT)n	Simple_repeat	1	41	(0)	3687477
14	9.3	0.0	0.0	chr7	87628861	87628883	(71717090)	+	(GCG)n	Simple_repeat	1	23	(0)	3687478
203	22.2	15.9	3.2	chr7	92179326	92179418	(67166555)	C	MER5B	DNA/hAT-Charlie	(13)	165	59	3693494
81	31.2	2.1	5.0	chr7	98400244	98400714	(60945259)	+	G-rich	Low_complexity	1	481	(0)	3702486
31	0.0	0.0	0.0	chr7	106101439	106101467	(53244506)	+	(C)n	Simple_repeat	1	29	(0)	3717099
35	25.8	2.4	5.8	chr7	106112281	106112449	(53233524)	+	G-rich	Low_complexity	1	173	(0)	3717117
330	30.7	11.6	0.3	chr7	108379000	108379283	(50966690)	+	L1MEd	LINE/L1	560	879	(6207)	3720442
26	10.3	7.6	2.8	chr7	108526347	108526412	(50819561)	+	(CGTG)n	Simple_repeat	1	71	(0)	3720664
1680	19.9	0.8	8.9	chr7	121480596	121481020	(37864953)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	3737743
15	29.3	0.0	0.0	chr7	131108191	131108237	(28237736)	+	(GCA)n	Simple_repeat	1	47	(0)	3752136
14	17.6	2.5	2.4	chr7	135662425	135662464	(23683509)	+	G-rich	Low_complexity	1	41	(0)	3759374
8600	16.2	3.9	2.3	chr7	138511765	138513369	(20832604)	C	MSTA-int	LTR/ERVL-MaLR	(0)	1631	1	3763775
239	32.0	8.7	1.6	chr7	141550770	141551077	(17794896)	+	L2a	LINE/L2	2920	3251	(175)	3769472
256	23.1	10.0	0.0	chr7	141551677	141551784	(17794189)	+	MIR3	SINE/MIR	27	146	(62)	3769473
570	34.8	11.7	3.5	chr7	141551907	141552392	(17793581)	+	L2b	LINE/L2	2407	2937	(482)	3769474
1540	14.3	1.3	0.0	chr7	141737809	141738038	(17607935)	C	AluJb	SINE/Alu	(2)	310	78	3769757
2152	27.8	10.6	8.5	chr7	145427709	145428693	(13917280)	+	L1MDa	LINE/L1	473	1470	(5163)	3774623
33	11.4	1.3	6.5	chr7	146116098	146116173	(13229800)	+	GA-rich	Low_complexity	1	77	(0)	3775457
26	0.0	0.0	0.0	chr7	146116215	146116239	(13229734)	+	(GGC)n	Simple_repeat	1	25	(0)	3775458
395	30.6	11.8	1.7	chr7	148825600	148825888	(10520085)	+	Tigger15a	DNA/TcMar-Tigger	343	664	(51)	3779424
452	23.5	7.8	6.1	chr7	148876724	148876886	(10469087)	C	MER58C	DNA/hAT-Charlie	(0)	215	50	3779523
253	30.7	7.8	2.5	chr7	148876903	148877068	(10468905)	+	MIR	SINE/MIR	21	262	(0)	3779524
1732	16.0	2.2	1.3	chr7	149125674	149125986	(10219987)	C	7SLRNA	srpRNA	(4)	316	1	3780093
16	22.2	3.3	3.2	chr7	149126047	149126118	(10219855)	+	(CCAGGC)n	Simple_repeat	1	72	(0)	3780094
1977	16.7	0.0	0.0	chr7	149140758	149141063	(10204910)	+	AluJr	SINE/Alu	1	306	(6)	3780138
5652	16.1	0.9	4.7	chr7	149531808	149532818	(9813155)	+	LTR25-int	LTR/ERV1	3825	4796	(2392)	3780817
14	24.1	1.7	4.9	chr7	150368680	150368686	(8977287)	+	(GCGGCC)n	Simple_repeat	1	16	(45)	3781957
13	13.1	2.7	5.3	chr7	150368687	150368723	(8977250)	+	(CGCCC)n	Simple_repeat	1	38	(0)	3781958
14	24.1	1.7	4.9	chr7	150368724	150368739	(8977234)	+	(GCGGCC)n	Simple_repeat	17	61	(0)	3781957
14	15.4	6.7	2.1	chr7	150368946	150368990	(8976983)	+	(GGCCGG)n	Simple_repeat	1	48	(0)	3781959
388	24.8	5.3	5.3	chr7	151459743	151459912	(7886061)	+	MER5A	DNA/hAT-Charlie	1	170	(19)	3783483
206	17.4	8.0	6.8	chr7	151460498	151460571	(7885402)	C	MIR3	SINE/MIR	(18)	190	116	3783484
259	20.0	1.5	1.5	chr7	152025107	152025172	(7320801)	C	L1M	LINE/L1	(2456)	5426	5361	3784460
1762	15.0	0.7	1.7	chr7	152025174	152025473	(7320500)	C	7SLRNA	srpRNA	(5)	315	19	3784461
16	22.0	5.4	3.9	chr7	152025618	152025691	(7320282)	+	(CGCGG)n	Simple_repeat	1	78	(0)	3784462
23	12.4	3.5	5.0	chr7	152025935	152025992	(7319981)	+	(GCG)n	Simple_repeat	1	60	(0)	3784463
29	0.0	0.0	0.0	chr7	152436749	152436775	(6909198)	+	(CTCCGG)n	Simple_repeat	1	27	(0)	3785122
1459	19.7	6.3	5.7	chr7	152882606	152883063	(6462910)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	7	3786136
2139	13.4	0.0	1.0	chr7	156049987	156050292	(3295681)	+	AluSq	SINE/Alu	1	303	(10)	3790416
396	30.8	12.6	6.0	chr7	156786953	156787401	(2558572)	C	L1MEd	LINE/L1	(6521)	582	100	3791331
394	24.5	5.2	6.4	chr7	157136192	157136258	(2209715)	+	MER112	DNA/hAT-Charlie	97	160	(101)	3791927
1827	18.8	10.8	5.6	chr7	157136266	157136921	(2209052)	+	L1MA9	LINE/L1	5310	6082	(230)	3791929
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
262	27.4	11.9	3.6	chr8	12778307	12778529	(132360107)	+	L1ME4a	LINE/L1	5670	5913	(211)	3811551
815	16.9	3.0	0.0	chr8	12778603	12778732	(132359904)	+	L1PA8A	LINE/L1	5996	6129	(2)	3811552
510	21.7	7.0	2.9	chr8	13131648	13131851	(132006785)	C	MIRb	SINE/MIR	(15)	253	41	3812188
12	11.2	3.2	3.1	chr8	25797821	25797851	(119340785)	+	(GAATGA)n	Simple_repeat	1	32	(0)	3831646
488	30.7	10.4	0.9	chr8	27218996	27219222	(117919414)	+	MIRb	SINE/MIR	14	264	(4)	3833994
15	0.0	0.0	0.0	chr8	30156938	30156954	(114981682)	+	(AC)n	Simple_repeat	1	17	(0)	3839162
3127	15.9	3.2	5.1	chr8	30156958	30157588	(114981048)	C	L1PB4	LINE/L1	(12)	6144	5526	3839163
444	19.5	5.6	3.3	chr8	37203685	37203806	(107934830)	C	HAL1	LINE/L1	(1149)	1358	1234	3849985
850	11.5	9.6	0.0	chr8	37203999	37204120	(107934516)	+	AluSc	SINE/Alu	174	308	(1)	3849986
2274	10.2	0.7	0.0	chr8	37637113	37637407	(107501229)	C	AluSp	SINE/Alu	(16)	297	1	3850680
42	2.2	2.2	0.0	chr8	42896741	42896786	(102241850)	+	(CGG)n	Simple_repeat	1	47	(0)	3859714
3426	22.4	10.8	4.0	chr8	43373869	43375351	(101763285)	+	HERV35I-int	LTR/ERV1	1818	3599	(3319)	3860463
18325	16.3	5.3	7.4	chr8	47213776	47214956	(97923680)	C	HERV35I-int	LTR/ERV1	(3057)	3861	2644	3861599
12419	15.7	2.1	1.8	chr8	52601107	52602680	(92535956)	+	MER41-int	LTR/ERV1	3128	5170	(2018)	3868367
19737	13.6	3.3	5.3	chr8	55726989	55729046	(89409590)	C	MER41-int	LTR/ERV1	(2341)	3605	1538	3872768
1574	27.8	4.4	3.6	chr8	57205915	57206586	(87932050)	C	MER50	LTR/ERV1	(29)	705	28	3874990
2155	21.6	10.2	2.4	chr8	57209256	57210098	(87928538)	C	MER50-int	LTR/ERV1	(5568)	1637	729	3874991
1080	24.1	1.3	2.5	chr8	57210109	57210427	(87928209)	C	MER50	LTR/ERV1	(134)	600	286	3874991
828	29.3	5.5	3.9	chr8	57210498	57210965	(87927671)	C	MER50	LTR/ERV1	(231)	503	28	3874994
25	21.4	6.3	2.0	chr8	60516807	60516901	(84621735)	+	G-rich	Low_complexity	1	101	(0)	3879292
19	20.3	4.5	2.9	chr8	60516917	60516982	(84621654)	+	(CGG)n	Simple_repeat	1	69	(0)	3879293
17	14.6	0.0	6.8	chr8	60517072	60517115	(84621521)	+	(CGG)n	Simple_repeat	1	44	(0)	3879294
14	15.9	0.0	0.0	chr8	60517149	60517176	(84621460)	+	GA-rich	Low_complexity	1	28	(0)	3879295
18	19.6	1.9	5.6	chr8	65766615	65766667	(79371969)	+	(TC)n	Simple_repeat	1	54	(0)	3886370
16	23.2	0.0	2.1	chr8	66712880	66712926	(78425710)	+	(GGCGG)n	Simple_repeat	1	47	(0)	3887940
514	31.0	2.2	10.0	chr8	70000238	70000461	(75138175)	C	Chap1_Mam	DNA/hAT-Charlie	(36)	306	92	3893041
17133	13.4	2.5	3.6	chr8	74901524	74904636	(70234000)	+	MER41-int	LTR/ERV1	919	4941	(2264)	3900288
33700	13.1	6.8	3.8	chr8	83352689	83357449	(61781187)	C	HUERS-P1-int	LTR/ERV1	(0)	6263	1252	3911788
35	0.0	0.0	0.0	chr8	85463770	85463802	(59674834)	+	(GGAGCCCC)n	Simple_repeat	1	33	(0)	3914608
14	15.9	7.1	0.0	chr8	85463829	85463870	(59674766)	+	(CCCCG)n	Simple_repeat	1	45	(0)	3914609
37	0.0	0.0	0.0	chr8	85464147	85464180	(59674456)	+	(CCCCGAT)n	Simple_repeat	1	34	(0)	3914610
298	29.0	3.1	1.6	chr8	85659943	85660068	(59478568)	C	L1ME4b	LINE/L1	(0)	892	765	3914925
322	27.6	0.0	0.0	chr8	85660141	85660227	(59478409)	C	MLT1F1	LTR/ERVL-MaLR	(482)	87	1	3914926
4592	9.3	0.1	1.5	chr8	85660229	85660904	(59477732)	C	L1P1	LINE/L1	(2973)	3173	2507	3914927
21	21.8	2.9	7.4	chr8	86342672	86342776	(58795860)	+	G-rich	Low_complexity	1	108	(0)	3915917
13	19.0	0.0	5.0	chr8	92102807	92102846	(53035790)	+	(GCCC)n	Simple_repeat	1	40	(0)	3923412
16	10.5	3.2	0.0	chr8	92103158	92103188	(53035448)	+	(CTCC)n	Simple_repeat	1	32	(0)	3923413
17	21.4	3.9	5.0	chr8	92103352	92103428	(53035208)	+	(GCGCCGC)n	Simple_repeat	1	80	(0)	3923414
12	9.8	0.0	0.0	chr8	92103580	92103601	(53035035)	+	(GGGC)n	Simple_repeat	1	22	(0)	3923415
630	23.3	7.2	2.4	chr8	94156801	94156989	(50981647)	C	MIRb	SINE/MIR	(36)	232	42	3926381
449	25.7	1.6	0.9	chr8	94475718	94475849	(50662787)	+	L1M5	LINE/L1	5450	5582	(542)	3926899
2162	11.8	0.7	0.0	chr8	94475850	94476138	(50662498)	+	AluSz	SINE/Alu	1	291	(21)	3926900
286	32.5	1.9	3.2	chr8	94476139	94476161	(50662475)	+	L1M5	LINE/L1	5583	5603	(521)	3926899
297	31.9	6.3	2.7	chr8	94476203	94476386	(50662250)	+	L1MEg	LINE/L1	249	439	(5645)	3926901
13	28.3	5.4	1.3	chr8	94720070	94720143	(50418493)	+	(GGCGGT)n	Simple_repeat	1	78	(0)	3927428
505	24.4	13.9	2.7	chr8	96283116	96283300	(48855336)	C	MLT1N2	LTR/ERVL-MaLR	(315)	247	39	3930038
2218	8.7	0.0	1.0	chr8	105000001	105000301	(40138335)	+	L1PA8A	LINE/L1	5832	6129	(2)	3944563
2619	10.6	5.1	1.8	chr8	107915261	107915755	(37222881)	+	HUERS-P1-int	LTR/ERV1	202	799	(5464)	3948625
953	13.4	1.2	2.8	chr8	107915756	107915931	(37222705)	+	HUERS-P1-int	LTR/ERV1	928	1100	(5163)	3948625
13965	13.2	7.0	5.8	chr8	107915901	107917203	(37221433)	+	MER41-int	LTR/ERV1	2608	3922	(2024)	3948626
15302	14.8	3.1	2.7	chr8	126218795	126223153	(18915483)	C	MER41-int	LTR/ERV1	(1)	7187	609	3977084
19	17.5	2.2	0.0	chr8	142945701	142945745	(2192891)	+	(GGCTCA)n	Simple_repeat	1	46	(0)	4005481
346	32.5	4.5	9.8	chr8	143048065	143048465	(2090171)	+	LTR43-int	LTR/ERV1	1	374	(4424)	4005651
2184	10.5	1.9	0.7	chr8	143048466	143048769	(2089867)	C	AluSq2	SINE/Alu	(5)	308	1	4005652
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
1387	25.7	7.0	3.4	chr8	144125268	144125631	(1013005)	+	L1MC4	LINE/L1	7167	7535	(507)	4007142
330	24.4	8.2	7.5	chr9	2550142	2550274	(135844443)	C	L2c	LINE/L2	(3)	3384	3251	4012279
12	4.5	4.0	3.9	chr9	2621364	2621388	(135773329)	+	(CTG)n	Simple_repeat	1	26	(0)	4012375
15	16.3	0.0	2.8	chr9	4299650	4299685	(134095032)	+	(GGCGGA)n	Simple_repeat	1	36	(0)	4014805
17899	17.3	7.5	5.8	chr9	5259959	5263781	(133130936)	C	MER57-int	LTR/ERV1	(1978)	5559	1	4016259
605	36.1	1.0	4.0	chr9	12958102	12958401	(125436316)	C	HERV16-int	LTR/ERVL	(3760)	1236	946	4026974
3423	13.9	0.9	4.1	chr9	12958406	12958992	(125435725)	C	LTR77	LTR/ERV1	(0)	622	55	4026975
16	9.3	0.0	0.0	chr9	15366044	15366066	(123028651)	+	(T)n	Simple_repeat	1	23	(0)	4030400
2771	6.6	0.3	0.0	chr9	15366073	15366421	(123028296)	C	L1PA8	LINE/L1	(77)	6095	5746	4030401
845	28.0	7.5	9.1	chr9	23621946	23622409	(114772308)	C	LTR16C	LTR/ERVL	(0)	489	34	4042101
326	20.0	2.6	0.0	chr9	32526496	32526570	(105868147)	C	L1ME2	LINE/L1	(18)	6146	6070	4053796
1609	23.5	7.6	10.3	chr9	32526585	32527494	(105867223)	C	L1ME2	LINE/L1	(537)	5627	4679	4053796
1216	24.1	8.3	3.5	chr9	33211570	33211731	(105182986)	+	MER20B	DNA/hAT-Charlie	607	780	(3)	4054966
14	25.2	4.2	0.0	chr9	33212249	33212296	(105182421)	+	GA-rich	Low_complexity	1	50	(0)	4054968
191	13.3	0.0	0.0	chr9	36166429	36166458	(102228259)	+	MIR1_Amn	SINE/MIR	125	154	(76)	4060086
3033	29.1	9.0	1.7	chr9	37289449	37290242	(101104475)	+	L2a	LINE/L2	2577	3425	(1)	4062384
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
2707	27.2	7.3	5.5	chr9	61855698	61856977	(76537740)	+	SST1	Satellite/centr	263	1561	(2)	4072475
15	5.6	0.0	0.0	chr9	61856982	61857000	(76537717)	+	(TG)n	Simple_repeat	1	19	(0)	4072477
23	25.6	1.7	0.0	chr9	61857000	61857059	(76537658)	+	(TC)n	Simple_repeat	1	61	(0)	4072478
1951	29.4	5.2	6.5	chr9	61857061	61858378	(76536339)	+	SST1	Satellite/centr	262	1562	(1)	4072479
3051	15.5	2.6	0.5	chr9	62838347	62838981	(75555736)	+	TAR1	Satellite/telo	1420	2068	(43)	4073704
18600	10.6	1.7	6.0	chr9	62840284	62843326	(75551391)	C	L1PBa	LINE/L1	(927)	5198	2140	4073706
556	20.2	1.8	9.8	chr9	62864476	62864711	(75530006)	C	MER52A	LTR/ERV1	(1538)	217	1	4073744
1381	16.6	4.3	4.0	chr9	62864713	62865033	(75529684)	+	LTR8	LTR/ERV1	365	686	(5)	4073745
415	28.0	2.0	1.0	chr9	63817237	63817537	(74577180)	+	LSAU	Satellite	1	303	(172)	4074767
2605	29.9	5.1	4.7	chr9	65388281	65390272	(73004445)	+	SST1	Satellite/centr	1	2001	(859)	4076190
18	11.0	4.9	2.3	chr9	72365284	72365324	(66029393)	+	(CGG)n	Simple_repeat	1	43	(0)	4086364
47	2.0	0.0	3.7	chr9	78030875	78030928	(60363789)	+	(GT)n	Simple_repeat	1	54	(0)	4095145
13	26.1	2.4	0.0	chr9	79572466	79572507	(58822210)	+	(GCG)n	Simple_repeat	1	43	(0)	4097447
13	19.5	0.0	2.7	chr9	79572840	79572876	(58821841)	+	G-rich	Low_complexity	1	37	(0)	4097448
1640	22.5	3.0	2.2	chr9	79686382	79686836	(58707881)	+	MLT1C	LTR/ERVL-MaLR	7	465	(2)	4097598
16	23.3	1.3	7.7	chr9	83622940	83623016	(54771701)	+	G-rich	Low_complexity	1	78	(0)	4103205
180	18.2	0.0	0.0	chr9	83623330	83623362	(54771355)	C	MIR3	SINE/MIR	(60)	148	116	4103206
13	20.8	4.3	2.1	chr9	84669224	84669269	(53725448)	+	G-rich	Low_complexity	1	48	(0)	4105066
287	27.2	12.7	12.2	chr9	86100322	86100493	(52294224)	+	MER5B	DNA/hAT-Charlie	1	173	(5)	4107303
16	20.4	7.0	2.6	chr9	86946660	86946730	(51447987)	+	(CAGCCCAG)n	Simple_repeat	1	76	(0)	4108702
15	28.6	3.1	1.5	chr9	86946736	86946800	(51447917)	+	(CCG)n	Simple_repeat	1	67	(0)	4108703
13	26.1	0.0	0.0	chr9	86946800	86946840	(51447877)	+	G-rich	Low_complexity	1	41	(0)	4108704
278	29.7	1.0	0.0	chr9	88058886	88058986	(50335731)	+	HAL1b	LINE/L1	1724	1825	(682)	4110410
5528	12.5	2.2	1.8	chr9	89127431	89128334	(49266383)	+	MER41-int	LTR/ERV1	2167	3074	(2872)	4112128
7010	12.4	4.3	2.3	chr9	89139804	89141062	(49253655)	C	MER41-int	LTR/ERV1	(2764)	3182	1898	4112131
16	19.0	0.0	7.3	chr9	95426789	95426843	(42967874)	+	(CCCGG)n	Simple_repeat	1	55	(0)	4121215
5129	17.2	3.3	3.4	chr9	97120459	97121205	(41273512)	+	L1MD1	LINE/L1	2582	3328	(3209)	4124034
2081	20.6	15.7	0.6	chr9	98856009	98856530	(39538187)	C	MLT1E1	LTR/ERVL-MaLR	(38)	616	1	4127354
3664	22.9	11.6	4.7	chr9	98856536	98857537	(39537180)	C	MLT1E1-int	LTR/ERVL-MaLR	(5)	1484	414	4127354
523	36.4	7.2	4.6	chr9	99608048	99608565	(38786152)	C	L2b	LINE/L2	(0)	3426	2816	4128789
180	32.8	0.0	8.2	chr9	99608519	99608591	(38786126)	C	MamTip2	DNA/hAT-Tip100	(186)	119	53	4128790
575	25.1	11.1	12.0	chr9	101478519	101478917	(36915800)	+	MLT1J2	LTR/ERVL-MaLR	45	439	(9)	4131761
11507	12.6	4.2	2.8	chr9	104079426	104081277	(34313440)	C	MER41-int	LTR/ERV1	(1668)	5750	2565	4135218
2429	7.8	5.4	0.0	chr9	104081278	104081608	(34313109)	+	L1PA10	LINE/L1	5818	6167	(1)	4135220
252	33.5	9.9	7.1	chr9	105693914	105694296	(32700421)	+	L2c	LINE/L2	2979	3387	(0)	4137931
17	10.0	0.0	5.6	chr9	105694838	105694873	(32699844)	+	G-rich	Low_complexity	1	36	(0)	4137932
13	18.9	4.5	2.2	chr9	112333142	112333185	(26061532)	+	(CCGCGGA)n	Simple_repeat	1	46	(0)	4149606
35	24.5	3.9	2.2	chr9	112333644	112333773	(26060944)	+	(CGCCCC)n	Simple_repeat	1	135	(0)	4149607
979	20.4	1.8	1.4	chr9	117197780	117198063	(21196654)	C	L1MEg	LINE/L1	(4651)	1433	1149	4158976
21512	11.4	2.6	6.1	chr9	117198082	117200083	(21194634)	C	L1HS	LINE/L1	(31)	6309	4431	4158977
14619	11.3	2.3	3.4	chr9	122417286	122420554	(15974163)	C	HUERS-P1-int	LTR/ERV1	(0)	6263	2764	4168994
1890	13.0	1.8	0.0	chr9	122420555	122420824	(15973893)	C	AluSx1	SINE/Alu	(10)	302	28	4168996
189	27.9	5.5	2.9	chr9	124698567	124698636	(13696081)	+	L2b	LINE/L2	3304	3375	(0)	4173067
317	20.9	8.1	0.0	chr9	130321471	130321561	(8073156)	C	MLT1O	LTR/ERVL-MaLR	(343)	199	101	4184789
444	32.3	2.5	5.4	chr9	134406046	134406112	(3988605)	C	MIR	SINE/MIR	(37)	225	163	4191982
2065	14.6	1.3	0.7	chr9	134406113	134406421	(3988296)	+	AluJo	SINE/Alu	1	311	(1)	4191983
1433	26.9	2.7	0.5	chr9	135260582	135261015	(3133702)	+	L1MD1	LINE/L1	5797	6240	(2)	4192964
2150	11.9	0.0	1.0	chrX	9531735	9532029	(146508866)	C	AluSz	SINE/Alu	(14)	298	7	4374962
10992	15.8	5.1	4.8	chrX	9665540	9667030	(146373865)	+	HUERS-P1-int	LTR/ERV1	2104	3613	(2650)	4375147
365	30.8	12.9	4.4	chrX	10603583	10603922	(145436973)	+	L3	LINE/CR1	3719	4091	(8)	4376728
576	23.7	9.3	0.0	chrX	19514136	19514291	(136526604)	C	MER5B	DNA/hAT-Charlie	(4)	174	3	4391494
11808	14.7	0.2	1.3	chrX	40794171	40794362	(115246533)	C	MER52-int	LTR/ERV1	(2050)	5041	4859	4423106
24189	10.4	3.1	1.1	chrX	40794363	40796320	(115244575)	+	L1PB1	LINE/L1	895	2931	(3932)	4423109
30	0.0	0.0	3.0	chrX	41254060	41254092	(114786803)	+	(TTTTTTG)n	Simple_repeat	1	33	(0)	4423931
1071	8.7	1.3	0.7	chrX	41254102	41254250	(114786645)	C	AluSx	SINE/Alu	(44)	268	119	4423932
26751	8.3	1.3	0.7	chrX	42789042	42793155	(113247740)	C	MER61-int	LTR/ERV1	(0)	5217	1032	4426450
1546	24.7	5.1	0.5	chrX	44432391	44432805	(111608090)	+	LTR16A	LTR/ERVL	17	451	(0)	4428851
876	16.5	0.0	0.0	chrX	44432837	44432963	(111607932)	+	AluJo	SINE/Alu	1	127	(185)	4428852
9422	13.2	5.6	3.0	chrX	47810570	47812461	(108228434)	C	MER41-int	LTR/ERV1	(2413)	5005	2535	4434853
281	20.0	0.0	0.0	chrX	51396710	51396769	(104644126)	C	L1MCb	LINE/L1	(5768)	277	218	4440573
3407	12.9	10.9	0.3	chrX	73623757	73624372	(82416523)	C	MER41-int	LTR/ERV1	(3000)	2946	2258	4464632
15	21.4	4.4	0.0	chrX	73944061	73944105	(82096790)	+	A-rich	Low_complexity	1	47	(0)	4464970
30	12.2	4.8	0.0	chrX	73944168	73944229	(82096666)	+	(ACGGCA)n	Simple_repeat	1	65	(0)	4464971
12035	19.3	3.7	2.9	chrX	80051718	80055953	(75984942)	C	L1PA11	LINE/L1	(2467)	4395	82	4471394
2495	16.6	10.5	4.1	chrX	80055956	80056489	(75984406)	C	MER57-int	LTR/ERV1	(3954)	3583	3012	4471396
1040	24.1	5.0	7.9	chrX	82838250	82838772	(73202123)	+	LTR49-int	LTR/ERV1	1584	2185	(4146)	4474295
3810	21.3	4.3	4.3	chrX	82838761	82839970	(73200925)	+	LTR49-int	LTR/ERV1	3013	4754	(2434)	4474295
2272	18.8	5.5	3.1	chrX	93178671	93179323	(62861572)	+	LTR19-int	LTR/ERV1	1431	2381	(3882)	4485311
26918	10.2	2.1	1.1	chrX	98375586	98380207	(57660688)	C	MER61-int	LTR/ERV1	(33)	5184	363	4491978
20443	9.3	1.6	1.9	chrX	98588005	98591037	(57449858)	C	MER57-int	LTR/ERV1	(1735)	5802	2777	4492248
35437	9.3	2.3	1.1	chrX	106257094	106262755	(49778140)	C	MER57-int	LTR/ERV1	(0)	7537	1705	4502547
34	16.7	0.0	0.0	chrX	107617013	107617072	(48423823)	+	A-rich	Low_complexity	1	60	(0)	4504482
31	9.1	2.1	0.0	chrX	107825679	107825726	(48215169)	+	(CA)n	Simple_repeat	1	49	(0)	4504921
33	23.2	1.7	5.0	chrX	107826209	107826325	(48214570)	+	(GCG)n	Simple_repeat	1	119	(0)	4504922
13	19.7	10.3	0.0	chrX	107826688	107826745	(48214150)	+	G-rich	Low_complexity	1	64	(0)	4504923
18	27.8	0.0	0.0	chrX	110317719	110317770	(45723125)	+	GA-rich	Low_complexity	1	52	(0)	4508208
14	9.3	0.0	0.0	chrX	110317827	110317849	(45723046)	+	(CCG)n	Simple_repeat	1	23	(0)	4508209
20573	12.0	3.9	5.0	chrX	117173272	117178182	(38862713)	+	MER61-int	LTR/ERV1	14	5206	(11)	4517432
5098	16.3	2.3	6.6	chrX	119112257	119113372	(36927523)	+	L1MB8	LINE/L1	5141	6178	(0)	4520464
10989	10.7	2.4	0.5	chrX	122555410	122556960	(33483935)	+	THE1B-int	LTR/ERVL-MaLR	1	1580	(0)	4525583
17	12.4	2.9	0.0	chrX	123859760	123859794	(32181101)	+	G-rich	Low_complexity	1	36	(0)	4527539
812	17.2	0.0	0.8	chrX	123928522	123928649	(32112246)	+	FLAM_C	SINE/Alu	3	129	(14)	4527734
1341	16.0	11.9	0.7	chrX	123928838	123929106	(32111789)	+	AluSc8	SINE/Alu	6	308	(3)	4527735
19213	11.7	5.9	3.8	chrX	126965849	126969142	(29071753)	+	MER61-int	LTR/ERV1	9	3375	(1842)	4531741
10208	11.6	2.0	2.8	chrX	128014305	128015897	(28024998)	C	THE1B-int	LTR/ERVL-MaLR	(0)	1580	1	4532901
16	17.9	9.2	1.4	chrX	129522781	129522806	(26518089)	+	(AGGCGG)n	Simple_repeat	1	53	(18)	4534802
13	3.6	6.2	5.9	chrX	129522807	129522838	(26518057)	+	GA-rich	Low_complexity	1	34	(0)	4534803
16	17.9	9.2	1.4	chrX	129522839	129522845	(26518050)	+	(AGGCGG)n	Simple_repeat	54	71	(0)	4534802
19	15.3	0.0	4.3	chrX	129522954	129523002	(26517893)	+	(GCCCC)n	Simple_repeat	1	46	(0)	4534804
14	15.3	2.6	2.6	chrX	130524336	130524373	(25516522)	+	(GGAGTGG)n	Simple_repeat	1	39	(0)	4536676
3053	13.2	3.9	1.1	chrX	134218552	134219260	(21821635)	C	LTR25-int	LTR/ERV1	(3010)	2936	2169	4542270
2797	11.9	3.0	0.9	chrX	141002791	141003240	(15037655)	C	LTR46	LTR/ERV1	(0)	460	1	4553136
9963	12.7	5.6	0.3	chrX	141637806	141639347	(14401548)	C	THE1D-int	LTR/ERVL-MaLR	(0)	1631	3	4554069
4333	17.2	3.3	0.8	chrX	150438395	150439652	(5601243)	C	L1MB5	LINE/L1	(54)	6120	4837	4565882
2128	10.5	0.3	4.2	chrX	150439653	150439958	(5600937)	+	AluSx1	SINE/Alu	1	294	(18)	4565883
28	9.5	0.0	0.0	chrY	10666839	10666883	(46560532)	+	(CACTC)n	Simple_repeat	1	45	(0)	4587932
6112	24.5	0.6	0.4	chrY	10939178	10940587	(46286828)	+	(TTCCA)n	Simple_repeat	5	1415	(0)	4588487
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638
396	27.7	2.0	3.9	chrY	11281214	11281367	(45946048)	+	L2	LINE/L2	724	874	(2545)	4589056
1464	23.6	8.9	4.8	chrY	11281374	11281813	(45945602)	C	MER21C	LTR/ERVL	(22)	916	457	4589057
632	25.3	2.2	1.7	chrY	11282071	11282251	(45945164)	C	MER5A	DNA/hAT-Charlie	(0)	189	8	4589058
1081	32.1	12.4	1.6	chrY	11282268	11282912	(45944503)	+	L2	LINE/L2	916	1640	(1779)	4589056
249	31.4	10.8	10.1	chrY	11287602	11287738	(45939677)	C	LTR48	LTR/ERV1	(13)	631	502	4589062
27	0.0	3.3	0.0	chrY	11287739	11287768	(45939647)	+	(AAAAC)n	Simple_repeat	1	31	(0)	4589063
307	25.3	11.2	7.7	chrY	11287769	11288013	(45939402)	C	LTR48	LTR/ERV1	(143)	501	189	4589062