2507	12.8	7.4	1.2	chr1	16342683	16343110	(232613312)	+	MSTB2	LTR/ERVL-MaLR	1	457	(0)	27247
514	28.6	4.2	3.3	chr1	16343111	16343232	(232613190)	+	LTR33A	LTR/ERVL	395	517	(3)	27246
27024	4.1	0.5	0.0	chr1	33671998	33678118	(215278304)	+	L1PA4	LINE/L1	1	6152	(3)	65493
1118	13.3	5.0	0.5	chr1	33678126	33678314	(215278108)	+	MSTB1	LTR/ERVL-MaLR	188	385	(47)	65494
18	25.7	0.0	0.0	chr1	33678315	33678365	(215278057)	+	A-rich	Low_complexity	1	51	(0)	65495
2143	14.3	1.6	0.0	chr1	62746155	62746454	(186209968)	+	AluSx3	SINE/Alu	1	305	(6)	120754
12	19.1	5.9	3.7	chr1	99005053	99005103	(149951319)	+	(CGG)n	Simple_repeat	1	54	(0)	174245
13	14.8	5.1	2.4	chr1	99005473	99005511	(149950911)	+	(TATA)n	Simple_repeat	1	41	(0)	174246
245	23.9	5.8	2.2	chr1	197894289	197894380	(51062042)	+	L1MC5	LINE/L1	9213	9291	(13)	290504
630	30.7	4.1	1.4	chr1	197894408	197894421	(51062001)	+	MLT1L	LTR/ERVL-MaLR	308	321	(289)	290505
2290	17.7	1.9	9.3	chr1	197894422	197894882	(51061540)	C	MSTB	LTR/ERVL-MaLR	(0)	426	1	290506
299	30.3	16.2	1.8	chr1	233441261	233441429	(15514993)	+	L2b	LINE/L2	2920	3116	(271)	346399
835	24.3	5.7	0.5	chr1	233441438	233441652	(15514770)	C	Charlie10b	DNA/hAT-Charlie	(8)	234	8	346400
2937	7.3	0.0	0.0	chr1	236096779	236097148	(12859274)	C	LTR10A	LTR/ERV1	(62)	547	178	350992
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
1491	22.4	7.3	0.0	chr10	52547209	52547525	(81249897)	+	MER2	DNA/TcMar-Tigger	3	344	(1)	446437
2012	30.4	12.3	3.7	chr10	52547526	52547540	(81249882)	C	L2c	LINE/L2	(2621)	798	791	446435
2146	19.6	4.4	0.0	chr10	52547541	52547953	(81249469)	C	MSTB1	LTR/ERVL-MaLR	(0)	432	1	446438
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
1945	16.4	4.2	1.4	chr11	33989028	33989397	(101097225)	C	THE1D	LTR/ERVL-MaLR	(0)	381	1	624457
403	39.6	6.7	1.2	chr11	71186687	71187011	(63899611)	+	HERVL40-int	LTR/ERVL	5583	5926	(263)	677833
743	21.4	13.2	0.0	chr11	71187005	71187247	(63899375)	+	HERVL40-int	LTR/ERVL	5277	5498	(32)	677836
1190	28.5	11.3	1.2	chr11	71187677	71188088	(63898534)	+	LTR40b	LTR/ERVL	4	462	(0)	677837
280	33.6	6.1	0.0	chr12	2255710	2255816	(131019493)	C	L2b	LINE/L2	(6)	3369	3256	781930
241	31.9	0.8	0.8	chr12	17097512	17097631	(116177678)	C	MLT1J-int	LTR/ERVL-MaLR	(653)	734	615	805100
237	37.0	2.8	1.4	chr12	17097913	17098052	(116177257)	C	MLT1J-int	LTR/ERVL-MaLR	(876)	511	370	805100
135	1.6	0.8	0.0	chr14	77269669	77269795	(29773923)	+	(TC)n	Simple_repeat	1	128	(0)	1213918
25	0.0	0.0	0.0	chr14	77269796	77269822	(29773896)	+	(C)n	Simple_repeat	1	27	(0)	1213919
529	28.8	2.5	2.5	chr14	77269823	77269979	(29773739)	C	MIR	SINE/MIR	(43)	219	63	1213920
31	0.0	0.0	0.0	chr14	99420948	99420976	(7622742)	+	(G)n	Simple_repeat	1	29	(0)	1250017
293	19.4	4.0	0.0	chr16	1025186	1025257	(89313088)	C	MER2	DNA/TcMar-Tigger	(3)	342	268	1395420
64	12.6	0.8	3.2	chr16	5500073	5500194	(84838151)	+	(CCTC)n	Simple_repeat	1	123	(0)	1403414
35	11.0	0.0	0.0	chr16	5500196	5500255	(84838090)	+	(CATTC)n	Simple_repeat	1	60	(0)	1403415
1598	17.6	0.8	0.4	chr16	5500260	5500521	(84837824)	C	AluJr	SINE/Alu	(49)	263	1	1403416
2357	5.0	5.4	2.5	chr16	33335927	33340033	(56998312)	+	(TGGCTTGGC)n	Simple_repeat	1	4327	(0)	1462585
330	24.4	1.2	2.4	chr16	34071698	34071779	(56266566)	+	AluJb	SINE/Alu	208	288	(24)	1463578
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
993	4.0	0.0	0.0	chr17	32822870	32822994	(50434447)	+	L1PA5	LINE/L1	6030	6154	(0)	1597471
4661	13.8	6.1	7.9	chr17	50727102	50727212	(32530229)	+	Tigger2b_Pri	DNA/TcMar-Tigger	895	995	(73)	1632326
1191	16.0	14.4	0.4	chr17	50727231	50727462	(32529979)	C	MSTB1	LTR/ERVL-MaLR	(18)	414	145	1632329
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
28122	17.0	7.8	7.8	chr18	52790112	52792754	(27580531)	C	HUERS-P3b-int	LTR/ERV1	(7)	2901	90	1758952
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
1031	26.8	13.8	2.2	chr18	79200300	79200694	(1172591)	+	L1MEf	LINE/L1	2654	3070	(3249)	1795300
1404	12.8	0.5	5.3	chr19	1141697	1141922	(57475694)	C	AluJo	SINE/Alu	(97)	215	1	1798281
1668	10.8	8.2	2.9	chr19	33946160	33946400	(24671216)	+	AluSx1	SINE/Alu	58	312	(0)	1857598
2425	15.7	5.3	1.4	chr19	33946401	33946571	(24671045)	+	MSTB1	LTR/ERVL-MaLR	182	368	(64)	1857597
2097	14.6	0.0	1.6	chr19	33946572	33946879	(24670737)	C	AluJr	SINE/Alu	(8)	304	2	1857599
476	29.8	9.6	2.9	chr19	47485204	47485407	(11132209)	C	MIRb	SINE/MIR	(15)	253	35	1886272
394	31.5	0.0	1.8	chr19	47485538	47485650	(11131966)	+	L2b	LINE/L2	3256	3366	(9)	1886273
2449	14.1	4.9	3.3	chr19	49349479	49349841	(9267775)	+	MSTB	LTR/ERVL-MaLR	56	426	(0)	1890921
727	28.3	9.0	6.5	chr19	49349842	49350059	(9267557)	+	MLT1J	LTR/ERVL-MaLR	266	509	(3)	1890920
232	30.1	5.2	0.4	chr19	55670357	55670454	(2947162)	C	L2a	LINE/L2	(18)	3408	3251	1904263
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
6749	12.7	3.8	5.7	chr2	160994797	160995105	(81198424)	+	Tigger3b	DNA/TcMar-Tigger	1	307	(924)	2143826
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
619	18.6	0.5	0.0	chr2	161281902	161282139	(80911390)	+	ACRO1	Satellite/acro	1	239	(5)	2144211
366	20.9	3.2	0.0	chr2	231841760	231841848	(10351681)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247734
373	21.7	2.1	0.0	chr2	231841849	231841938	(10351591)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247734
341	22.0	3.2	0.0	chr2	231841939	231842027	(10351502)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247734
345	22.0	3.2	0.0	chr2	231842028	231842116	(10351413)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247734
381	25.0	1.8	1.8	chr2	231842117	231842206	(10351323)	+	MER20	DNA/hAT-Charlie	130	219	(0)	2247735
18	21.8	0.0	0.0	chr20	25867686	25867722	(38576445)	+	(AC)n	Simple_repeat	1	37	(0)	2302876
21	30.9	1.4	0.0	chr20	25867722	25867792	(38576375)	+	GA-rich	Low_complexity	1	72	(0)	2302877
2308	29.1	5.8	6.1	chr20	25867794	25869361	(38574806)	C	SST1	Satellite/centr	(1)	1562	1	2302878
2860	28.3	4.9	5.5	chr20	30283322	30285229	(34158938)	+	SST1	Satellite/centr	1	1895	(14)	2304820
1159	13.1	0.5	0.0	chr20	30519545	30520660	(33923507)	C	ACRO1	Satellite/acro	(55)	1121	1	2305115
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
880	13.0	0.0	0.0	chr21	8239093	8239215	(38470768)	C	AluSx3	SINE/Alu	(9)	302	180	2373343
47	0.0	0.0	0.0	chr21	8239234	8239276	(38470707)	+	(T)n	Simple_repeat	1	43	(0)	2373344
312	38.2	6.5	3.6	chr21	8419786	8420171	(38289812)	C	HAL1	LINE/L1	(1230)	1277	880	2373573
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
12	20.8	0.0	2.9	chr21	8434102	8434136	(38275847)	+	(CCG)n	Simple_repeat	1	35	(0)	2373611
25399	0.2	1.5	0.8	chr21	8441146	8441992	(38267991)	+	LSU-rRNA_Hsa	rRNA	1	877	(4158)	2373624
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
1562	29.8	5.6	6.5	chr21	9817901	9819192	(36890791)	C	SST1	Satellite/centr	(1)	1562	284	2374896
20	28.0	1.7	0.0	chr21	9819212	9819271	(36890712)	+	GA-rich	Low_complexity	1	61	(0)	2374897
21	16.7	0.0	2.4	chr21	9819273	9819314	(36890669)	+	(AC)n	Simple_repeat	1	42	(0)	2374898
1996	29.3	5.0	5.8	chr21	9819321	9820600	(36889383)	C	SST1	Satellite/centr	(11)	1552	284	2374899
1750	28.6	6.0	7.2	chr21	9822132	9823427	(36886556)	C	SST1	Satellite/centr	(1)	1562	284	2374905
3733	5.1	0.8	0.0	chr21	10269869	10270342	(36439641)	+	HSATI	Satellite	90	567	(10)	2375347
1732	14.4	0.0	5.1	chr21	10270343	10270634	(36439349)	+	AluSc8	SINE/Alu	13	289	(22)	2375348
404	28.3	11.0	2.7	chr21	10427070	10427382	(36282601)	C	L2c	LINE/L2	(213)	3174	2827	2375541
25	15.4	0.0	0.0	chr21	10427515	10427557	(36282426)	+	(CA)n	Simple_repeat	1	43	(0)	2375542
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
530	23.4	6.1	1.9	chr22	11572555	11572711	(39245757)	+	MIRb	SINE/MIR	33	196	(72)	2425189
590	21.9	0.2	0.0	chr22	11818875	11819136	(38999332)	+	ACRO1	Satellite/acro	1	262	(0)	2425395
41	8.0	0.0	0.0	chr22	12173926	12173978	(38644490)	+	(GT)n	Simple_repeat	1	53	(0)	2425781
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
2583	9.9	0.0	0.0	chr22	33122346	33122658	(17695810)	C	AluSq2	SINE/Alu	(0)	313	1	2458441
6832	15.2	4.5	2.9	chr22	33122659	33123609	(17694859)	C	MER66-int	LTR/ERV1	(4512)	2164	1210	2458440
786	22.4	3.7	1.8	chr22	49484509	49484741	(1333727)	+	MLT1A	LTR/ERVL-MaLR	5	242	(148)	2489426
404	20.2	9.0	0.9	chr22	49485070	49485176	(1333292)	+	MLT1A	LTR/ERVL-MaLR	266	374	(0)	2489426
2295	13.4	0.0	0.0	chr3	142554954	142555266	(55740293)	+	AluSq2	SINE/Alu	1	313	(0)	2704297
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
1094	12.9	0.2	0.0	chr4	49322499	49324803	(140889752)	+	ACRO1	Satellite/acro	1	2308	(0)	2865130
304	22.8	0.0	0.0	chr4	49510858	49510914	(140703641)	C	MER47C	DNA/TcMar-Tigger	(28)	69	13	2865176
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
4338	12.6	1.4	2.4	chr5	106535043	106535532	(75002727)	C	L1PA13	LINE/L1	(19)	6144	5656	3195260
1675	12.5	0.9	0.4	chr5	106535533	106535764	(75002495)	C	AluSc	SINE/Alu	(27)	282	50	3195261
4789	19.4	5.6	1.0	chr5	134982070	134983320	(46554939)	+	L1PB3	LINE/L1	1476	2787	(4833)	3233721
577	14.7	12.8	15.6	chr5	178192685	178192872	(3345387)	+	MER33	DNA/hAT-Charlie	52	257	(67)	3308763
1651	19.9	8.8	4.1	chr5	178192873	178193307	(3344952)	C	MSTB2	LTR/ERVL-MaLR	(0)	457	1	3308764
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
2820	16.9	13.4	1.5	chr6	3166113	3166761	(167639218)	+	MER4CL34	LTR/ERV1	1	738	(27)	3318503
380	19.2	1.4	1.4	chr6	3166759	3166832	(167639147)	+	PRIMA4_LTR	LTR/ERV1	517	590	(4)	3318504
844	10.3	0.0	0.8	chr6	3166919	3167035	(167638944)	C	AluSq2	SINE/Alu	(0)	313	198	3318505
2033	11.1	8.0	2.6	chr6	112974932	112975273	(57830706)	+	THE1B	LTR/ERVL-MaLR	3	364	(0)	3477812
11104	10.3	2.1	0.3	chr6	112975274	112976824	(57829155)	+	THE1B-int	LTR/ERVL-MaLR	1	1580	(0)	3477812
12017	12.4	5.7	2.5	chr6	119236728	119237363	(51568616)	+	Tigger1	DNA/TcMar-Tigger	1446	2071	(347)	3486334
1873	14.6	12.3	1.6	chr6	131898365	131898741	(38907238)	C	MSTA	LTR/ERVL-MaLR	(0)	428	6	3503078
2256	17.3	3.8	0.5	chr6	131898796	131899207	(38906772)	C	MSTB	LTR/ERVL-MaLR	(0)	426	1	3503079
2230	12.5	0.0	0.7	chr6	143213489	143213816	(27592163)	C	AluSx1	SINE/Alu	(0)	312	1	3519542
94	10.7	1.1	1.1	chr7	57495470	57495644	(101850329)	+	(GGAAT)n	Simple_repeat	1	177	(0)	3642547
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
1485	28.3	1.5	2.6	chr8	57214477	57215085	(87923551)	C	MER50	LTR/ERV1	(123)	611	10	3874995
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
1387	25.7	7.0	3.4	chr8	144125268	144125631	(1013005)	+	L1MC4	LINE/L1	7167	7535	(507)	4007142
296	22.0	5.7	2.5	chr9	41229379	41230391	(97164326)	+	(TG)n	Simple_repeat	1	1071	(0)	4068370
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
243	4.6	0.0	2.1	chr9	137355408	137355734	(1038983)	+	(GAGGAAG)n	Simple_repeat	1	327	(0)	4195528
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638