3686	12.6	6.2	2.5	chr1	180999	181980	(248774442)	C	TAR1	Satellite/telo	(399)	1018	1	269
15	11.9	2.5	4.9	chr1	6440584	6440623	(242515799)	+	(GCCCCCC)n	Simple_repeat	1	41	(0)	8237
7160	4.6	3.9	1.1	chr1	9124260	9125131	(239831291)	+	MER11D	LTR/ERVK	1	897	(0)	12987
2028	19.4	4.3	2.4	chr1	9495641	9496093	(239460329)	C	L1MC1	LINE/L1	(99)	6234	5773	13716
9840	4.2	1.9	5.2	chr1	10028383	10029766	(238926656)	+	SVA_D	Retroposon/SVA	50	1386	(0)	14933
454	28.0	4.6	0.8	chr1	10835511	10835698	(238120724)	C	MIR	SINE/MIR	(43)	225	36	16435
215	20.5	0.0	0.0	chr1	10836323	10836361	(238120061)	+	MIRc	SINE/MIR	110	148	(120)	16436
449	29.9	5.2	0.8	chr1	10836364	10836513	(238119909)	C	L2a	LINE/L2	(5)	3421	3224	16437
15	27.2	0.0	6.7	chr1	10867071	10867145	(238089277)	+	(CCCCGC)n	Simple_repeat	1	75	(0)	16493
5417	5.4	1.9	4.3	chr1	12042702	12043767	(236912655)	+	SVA_D	Retroposon/SVA	57	965	(422)	19027
6994	8.1	21.3	4.6	chr1	13394276	13395260	(235561162)	+	SVA_D	Retroposon/SVA	101	1386	(0)	21264
4931	8.3	2.8	2.0	chr1	13394871	13395679	(235560743)	C	SVA_D	Retroposon/SVA	(518)	868	53	21266
2180	10.1	0.3	0.3	chr1	15713942	15714239	(233242183)	C	AluSg4	SINE/Alu	(12)	298	1	25894
208	21.9	4.5	5.9	chr1	15714255	15714322	(233242100)	+	MIR3	SINE/MIR	140	206	(2)	25895
19	0.0	0.0	0.0	chr1	15714349	15714369	(233242053)	+	(A)n	Simple_repeat	1	21	(0)	25896
841	25.7	4.1	1.9	chr1	15976264	15976536	(232979886)	C	MIRb	SINE/MIR	(1)	267	2	26437
445	40.5	2.8	0.3	chr1	15976615	15976926	(232979496)	+	L2	LINE/L2	1031	1350	(2069)	26438
367	31.0	2.5	1.9	chr1	16535844	16536004	(232420418)	+	L2	LINE/L2	2456	2617	(802)	27722
370	29.8	9.0	2.0	chr1	19432595	19432789	(229523633)	C	MIRb	SINE/MIR	(37)	231	22	33619
1863	16.4	0.0	3.0	chr1	19524933	19525237	(229431185)	+	AluJb	SINE/Alu	2	297	(15)	33834
1985	8.3	0.0	4.0	chr1	22451392	22451668	(226504754)	+	AluSq	SINE/Alu	40	305	(8)	40206
4846	11.0	3.9	3.2	chr1	23223386	23224529	(225731893)	C	MER11A	LTR/ERVK	(0)	1266	1	41921
1688	11.8	5.6	0.4	chr1	23641364	23641617	(225314805)	+	AluJb	SINE/Alu	1	268	(44)	42967
1160	23.8	11.7	6.8	chr1	23641618	23641873	(225314549)	C	MLT1C	LTR/ERVL-MaLR	(120)	347	93	42966
2530	4.8	0.0	0.3	chr1	23641874	23642184	(225314238)	C	AluY	SINE/Alu	(1)	310	1	42968
10302	3.8	0.0	14.2	chr1	23688155	23689767	(225266655)	+	SVA_D	Retroposon/SVA	1	1384	(2)	43109
13	15.2	2.5	4.9	chr1	23743733	23743772	(225212650)	+	G-rich	Low_complexity	1	41	(0)	43265
7039	8.1	1.8	3.2	chr1	23852445	23854063	(225102359)	+	SVA_D	Retroposon/SVA	1	1370	(17)	43521
5484	9.3	3.6	7.0	chr1	24798627	24800040	(224156382)	+	SVA_F	Retroposon/SVA	1	868	(516)	45773
271	24.5	19.3	0.0	chr1	25530720	25530874	(223425548)	+	MER113	DNA/hAT-Charlie	328	519	(2)	47322
8573	3.9	0.8	21.3	chr1	25603230	25604932	(223351490)	+	SVA_F	Retroposon/SVA	5	1355	(20)	47487
2003	14.0	0.3	3.4	chr1	29295023	29295343	(219661079)	C	AluJb	SINE/Alu	(0)	312	2	56341
8948	2.9	1.5	27.9	chr1	31175770	31177661	(217778761)	+	SVA_D	Retroposon/SVA	1	1386	(0)	60043
10153	3.5	0.4	10.7	chr1	32803739	32805221	(216151201)	C	SVA_B	Retroposon/SVA	(1)	1382	53	63776
24	25.4	3.8	0.0	chr1	32964720	32964798	(215991624)	+	(CGC)n	Simple_repeat	1	82	(0)	64114
6293	8.6	2.1	15.4	chr1	32973471	32975836	(215980586)	C	SVA_E	Retroposon/SVA	(0)	1382	50	64137
9176	5.1	0.9	13.7	chr1	33308781	33310358	(215646064)	C	SVA_A	Retroposon/SVA	(13)	1374	1	64896
10723	2.7	0.3	11.4	chr1	33508666	33510203	(215446219)	C	SVA_D	Retroposon/SVA	(20)	1366	1	65234
8990	5.0	2.0	20.0	chr1	34081394	34083087	(214873335)	+	SVA_B	Retroposon/SVA	1	1383	(0)	66187
7423	5.0	0.1	15.4	chr1	34967079	34968335	(213988087)	C	SVA_C	Retroposon/SVA	(1)	1383	320	67758
13	11.6	12.2	1.8	chr1	35883203	35883251	(213073171)	+	(CTGGCAG)n	Simple_repeat	1	55	(0)	69699
21	12.9	2.3	2.2	chr1	35883255	35883298	(213073124)	+	(GCG)n	Simple_repeat	1	45	(0)	69700
10850	2.9	0.1	11.3	chr1	38646768	38648328	(210308094)	+	SVA_D	Retroposon/SVA	1	1385	(1)	75080
326	28.8	16.3	1.3	chr1	39015001	39015229	(209941193)	C	LTR52	LTR/ERVL	(136)	285	16	75855
292	9.3	0.0	0.0	chr1	39015234	39015276	(209941146)	+	SVA_F	Retroposon/SVA	510	552	(823)	75858
205	21.4	0.0	4.5	chr1	39015541	39015584	(209940838)	C	L2c	LINE/L2	(75)	3312	3271	75859
338	29.7	8.9	9.2	chr1	39015697	39015758	(209940664)	C	MamRep605	LTR?	(189)	660	603	75860
336	25.6	11.9	1.5	chr1	39798966	39799100	(209157322)	+	MIRb	SINE/MIR	28	178	(90)	77427
190	21.1	1.9	1.9	chr1	39799240	39799292	(209157130)	+	MIRb	SINE/MIR	118	170	(98)	77428
34	0.0	0.0	0.0	chr1	40374597	40374625	(208581797)	+	(GT)n	Simple_repeat	1	29	(0)	78696
16	9.4	10.6	1.9	chr1	40374626	40374672	(208581750)	+	GA-rich	Low_complexity	1	52	(0)	78697
616	26.5	2.7	10.5	chr1	41495877	41496146	(207460276)	+	MIR	SINE/MIR	7	255	(13)	80919
192	27.8	6.4	0.0	chr1	43358252	43358339	(205598083)	+	MIR1_Amn	SINE/MIR	46	147	(121)	84213
19	19.0	0.0	0.0	chr1	43358713	43358754	(205597668)	+	(GCCCC)n	Simple_repeat	1	42	(0)	84214
9929	3.0	0.4	20.0	chr1	43501256	43502976	(205453446)	+	SVA_D	Retroposon/SVA	5	1386	(0)	84418
17	24.9	3.5	0.0	chr1	44030752	44030808	(204925614)	+	(GGCA)n	Simple_repeat	1	59	(0)	85305
7767	6.5	1.2	1.1	chr1	44738045	44739134	(204217288)	+	SVA_B	Retroposon/SVA	30	1120	(263)	86609
10833	4.0	1.1	6.2	chr1	44875751	44877212	(204079210)	+	SVA_D	Retroposon/SVA	1	1386	(0)	86894
7055	8.2	4.4	12.2	chr1	45114647	45116141	(203840281)	C	SVA_B	Retroposon/SVA	(0)	1383	11	87366
648	14.9	0.0	2.6	chr1	45693916	45694032	(203262390)	+	SVA_F	Retroposon/SVA	518	631	(744)	88550
5620	8.1	2.6	7.3	chr1	45724003	45725459	(203230963)	+	SVA_E	Retroposon/SVA	50	864	(518)	88620
1085	24.2	16.1	6.3	chr1	46719805	46720209	(202236213)	C	L2a	LINE/L2	(111)	3315	2800	90532
15	27.1	1.5	4.4	chr1	47996718	47996784	(200959638)	+	(CGG)n	Simple_repeat	1	68	(0)	92700
12	27.4	4.1	0.0	chr1	48472079	48472127	(200484295)	+	(GGC)n	Simple_repeat	1	51	(0)	93355
245	16.7	7.1	7.1	chr1	48472503	48472586	(200483836)	+	MIR1_Amn	SINE/MIR	94	177	(53)	93356
213	24.7	16.2	1.1	chr1	48472610	48472703	(200483719)	C	MIRc	SINE/MIR	(129)	139	29	93357
10580	3.0	0.2	11.5	chr1	48478692	48480252	(200476170)	+	SVA_D	Retroposon/SVA	2	1386	(0)	93367
2623	24.9	5.8	6.5	chr1	50826567	50826872	(198129550)	+	L1M5	LINE/L1	3213	3523	(2623)	97502
5493	5.2	3.4	2.5	chr1	50826874	50827622	(198128800)	+	SVA_A	Retroposon/SVA	609	1364	(23)	97504
260	35.2	11.2	3.8	chr1	52034168	52034430	(196921992)	C	L2c	LINE/L2	(5)	3382	3098	100027
10091	3.6	0.0	17.0	chr1	52869246	52870908	(196085514)	C	SVA_D	Retroposon/SVA	(2)	1384	5	101971
5863	6.7	3.9	3.3	chr1	54232588	54234364	(194722058)	+	SVA_F	Retroposon/SVA	24	1375	(0)	104714
287	30.3	5.7	0.0	chr1	54541903	54542001	(194414421)	+	L2b	LINE/L2	3267	3371	(4)	105333
20	11.4	0.0	2.5	chr1	56845735	56845774	(192110648)	+	(CAAAAAC)n	Simple_repeat	1	40	(0)	109620
6027	7.7	3.5	7.8	chr1	59921250	59922188	(189034234)	+	MER11D	LTR/ERVK	1	897	(0)	115653
231	30.4	2.8	0.0	chr1	60281284	60281352	(188675070)	C	MIR	SINE/MIR	(10)	252	182	116297
22	20.2	7.4	1.1	chr1	63523647	63523727	(185432695)	+	(TCTCTG)n	Simple_repeat	1	87	(0)	122201
5133	9.6	4.3	1.6	chr1	64414273	64415313	(184541109)	+	SVA_D	Retroposon/SVA	53	870	(517)	123844
420	26.5	4.9	3.6	chr1	64766298	64766520	(184189902)	C	L5	LINE/RTE-X	(759)	1506	1281	124470
12	15.3	3.5	0.0	chr1	65066511	65066539	(183889883)	+	(CCCT)n	Simple_repeat	1	30	(0)	125012
23	15.3	0.0	5.4	chr1	65066726	65066781	(183889641)	+	(TCC)n	Simple_repeat	1	56	(0)	125013
12	16.8	0.0	0.0	chr1	65066925	65066951	(183889471)	+	(CCCCT)n	Simple_repeat	1	27	(0)	125014
13	12.2	8.3	0.0	chr1	66930267	66930302	(182026120)	+	(GGCAGC)n	Simple_repeat	1	39	(0)	127982
773	13.6	18.5	0.6	chr1	67400733	67400909	(181555513)	+	MER21A	LTR/ERVL	49	264	(667)	128773
2242	15.5	10.9	8.3	chr1	67400915	67400940	(181555482)	+	MER21A	LTR/ERVL	376	401	(530)	128773
2121	15.7	0.7	0.7	chr1	67400941	67401246	(181555176)	+	AluSz6	SINE/Alu	1	306	(6)	128776
2242	15.5	10.9	8.3	chr1	67401247	67401726	(181554696)	+	MER21A	LTR/ERVL	402	897	(34)	128773
1504	21.1	1.4	4.2	chr1	67788322	67788640	(181167782)	C	AluJo	SINE/Alu	(0)	312	1	129584
6808	8.4	3.3	3.3	chr1	76111454	76113334	(172843088)	C	SVA_D	Retroposon/SVA	(16)	1370	51	140959
504	23.8	12.9	0.5	chr1	77686624	77686781	(171269641)	C	L2b	LINE/L2	(1)	3425	3209	143300
1167	19.1	6.5	3.5	chr1	77686801	77687252	(171269170)	+	SVA_E	Retroposon/SVA	432	856	(519)	143301
1549	15.7	8.5	3.3	chr1	77687253	77687779	(171268643)	+	SVA_F	Retroposon/SVA	421	857	(518)	143301
9436	7.7	11.4	2.2	chr1	80052604	80054032	(168902390)	C	LTR12C	LTR/ERV1	(0)	1579	3	146673
324	20.3	0.0	7.8	chr1	80054033	80054080	(168902342)	+	HERVL18-int	LTR/ERVL	5224	5267	(780)	146672
250	17.8	0.0	0.0	chr1	80054081	80054125	(168902297)	+	HERVL18-int	LTR/ERVL	5946	5990	(57)	146672
2237	14.6	2.2	0.6	chr1	80054238	80054588	(168901834)	+	LTR18A	LTR/ERVL	1	357	(0)	146674
746	24.7	5.9	5.1	chr1	81390585	81390930	(167565492)	C	L1ME3G	LINE/L1	(133)	759	406	148387
37	15.9	0.0	0.0	chr1	84078068	84078133	(164878289)	+	(CCG)n	Simple_repeat	1	66	(0)	152037
2268	9.4	0.0	0.0	chr1	84620194	84620511	(164335911)	C	AluSc	SINE/Alu	(0)	309	1	152804
12	16.9	0.0	0.0	chr1	84620578	84620604	(164335818)	+	(CTTC)n	Simple_repeat	1	27	(0)	152805
18	19.6	0.0	4.0	chr1	84621094	84621143	(164335279)	+	G-rich	Low_complexity	1	50	(0)	152806
29	0.0	0.0	0.0	chr1	84621265	84621289	(164335133)	+	(TG)n	Simple_repeat	1	25	(0)	152807
22	14.0	2.0	2.0	chr1	84997144	84997198	(163959224)	+	(CGCCC)n	Simple_repeat	1	55	(0)	153435
6524	8.9	6.6	3.4	chr1	86963156	86964665	(161991757)	C	SVA_C	Retroposon/SVA	(0)	1384	13	156403
8394	13.3	1.1	0.8	chr1	88087643	88089157	(160867265)	C	L1P3b	LINE/L1	(4922)	1539	1	158008
368	34.8	0.7	1.5	chr1	88089184	88089320	(160867102)	+	L2	LINE/L2	2839	2974	(445)	158006
7258	5.9	1.7	1.3	chr1	89797226	89798263	(159158159)	C	SVA_D	Retroposon/SVA	(23)	1363	429	160362
2114	14.2	1.6	0.7	chr1	89798287	89798596	(159157826)	+	AluSq	SINE/Alu	1	313	(0)	160364
42249	6.3	1.0	1.4	chr1	91465286	91466415	(157490007)	C	HERVL-int	LTR/ERVL	(3944)	1710	578	162737
7196	4.2	3.3	0.0	chr1	91466416	91467282	(157489140)	+	MER11D	LTR/ERVK	1	897	(0)	162740
6273	8.7	2.6	1.6	chr1	92025356	92026908	(156929514)	C	SVA_B	Retroposon/SVA	(1)	1382	23	163740
276	34.9	4.5	1.6	chr1	94542256	94542383	(154414039)	+	MIRc	SINE/MIR	50	181	(87)	167942
6048	8.1	2.9	7.6	chr1	96761739	96763587	(152192835)	C	SVA_D	Retroposon/SVA	(0)	1386	32	171136
278	22.1	9.1	12.3	chr1	99074800	99075026	(149881396)	+	L1ME3A	LINE/L1	5762	5980	(193)	174337
546	13.9	0.7	4.8	chr1	99075030	99075173	(149881249)	+	SVA_F	Retroposon/SVA	421	552	(823)	174339
6228	6.3	2.5	29.5	chr1	99507564	99509465	(149446957)	+	SVA_A	Retroposon/SVA	13	1387	(0)	174933
4694	8.4	3.5	3.0	chr1	99758375	99759412	(149197010)	+	MER11A	LTR/ERVK	1	1266	(0)	175310
10807	4.3	0.3	3.0	chr1	99856462	99857864	(149098558)	C	SVA_C	Retroposon/SVA	(18)	1366	1	175491
6757	6.6	3.7	0.0	chr1	101555484	101556347	(147400075)	+	MER11D	LTR/ERVK	1	897	(0)	178199
7047	5.5	2.6	0.0	chr1	102789849	102790716	(146165706)	C	MER11D	LTR/ERVK	(6)	891	1	179777
202	38.5	2.4	2.4	chr1	104670292	104670456	(144285966)	C	L2a	LINE/L2	(36)	3390	3226	181941
266	38.5	8.6	1.6	chr1	104670624	104670927	(144285495)	C	L2a	LINE/L2	(421)	2998	2672	181941
10324	3.9	0.4	11.1	chr1	106411820	106413364	(142543058)	+	SVA_D	Retroposon/SVA	7	1386	(0)	183998
11509	3.1	0.4	10.1	chr1	108159465	108160999	(140795423)	C	SVA_D	Retroposon/SVA	(0)	1386	1	186449
6788	8.4	3.5	4.5	chr1	109052644	109054199	(139902223)	+	SVA_B	Retroposon/SVA	22	1383	(0)	187866
6438	8.5	4.2	3.2	chr1	109073392	109074595	(139881827)	+	SVA_B	Retroposon/SVA	19	1383	(0)	187925
6591	7.1	2.8	4.2	chr1	111607039	111608899	(137347523)	C	SVA_D	Retroposon/SVA	(18)	1368	33	191782
4875	7.1	2.7	2.7	chr1	112728413	112729421	(136227001)	+	SVA_A	Retroposon/SVA	92	1386	(1)	193649
10306	3.2	0.8	7.8	chr1	113062955	113064386	(135892036)	C	SVA_C	Retroposon/SVA	(23)	1361	32	194405
23	20.2	5.6	3.2	chr1	113929682	113929771	(135026651)	+	(GGAGGC)n	Simple_repeat	1	95	(0)	195811
18	19.6	0.0	3.9	chr1	113929782	113929832	(135026590)	+	G-rich	Low_complexity	1	51	(0)	195812
1991	10.2	0.0	0.8	chr1	114021420	114021675	(134934747)	C	AluSz6	SINE/Alu	(30)	282	29	195945
251	22.0	0.0	0.0	chr1	114021677	114021726	(134934696)	+	PABL_B	LTR/ERV1	1	50	(617)	195946
865	28.2	7.3	7.6	chr1	114021840	114022391	(134934031)	+	PABL_A	LTR/ERV1	109	658	(2)	195947
7684	5.9	0.1	27.9	chr1	114241851	114243742	(134712680)	+	SVA_A	Retroposon/SVA	22	1387	(0)	196284
234	5.7	3.6	17.2	chr1	114435693	114435736	(134520686)	C	L1MB4	LINE/L1	(3)	6177	6139	196566
1592	17.4	8.6	0.0	chr1	114435737	114435877	(134520545)	C	AluJo	SINE/Alu	(22)	290	150	196567
30	0.0	0.0	0.0	chr1	114435878	114435905	(134520517)	+	(T)n	Simple_repeat	1	28	(0)	196568
1592	17.4	8.6	0.0	chr1	114435906	114436028	(134520394)	C	AluJo	SINE/Alu	(164)	148	1	196567
234	5.7	3.6	17.2	chr1	114436029	114436047	(134520375)	C	L1MB4	LINE/L1	(42)	6138	6123	196566
10549	3.3	0.1	11.2	chr1	114803830	114805378	(134151044)	C	SVA_C	Retroposon/SVA	(3)	1381	5	197307
4642	12.0	6.5	66.3	chr1	115359360	115361102	(133595320)	C	SVA_A	Retroposon/SVA	(215)	1172	421	198073
1550	25.1	7.8	1.8	chr1	116534682	116535249	(132421173)	C	Charlie25	DNA/hAT-Charlie	(1739)	785	181	199856
19	12.6	4.4	2.1	chr1	116909989	116910033	(132046389)	+	GA-rich	Low_complexity	1	47	(0)	200486
29	27.9	0.9	3.6	chr1	116910072	116910182	(132046240)	+	GA-rich	Low_complexity	1	112	(0)	200486
6745	3.5	0.0	0.0	chr1	119786221	119786983	(129169439)	C	MER11D	LTR/ERVK	(0)	897	135	204543
1667	12.2	0.0	0.8	chr1	119787056	119787302	(129169120)	C	L1MA2	LINE/L1	(7)	6297	6053	204544
2597	8.4	5.0	1.9	chr1	144101293	144106919	(104849503)	+	(TGGCTGGCT)n	Simple_repeat	1	5911	(0)	208844
9900	5.1	0.3	11.5	chr1	145763884	145765438	(103190984)	+	SVA_C	Retroposon/SVA	5	1384	(0)	211480
9875	5.0	0.4	10.3	chr1	147061316	147062787	(101893635)	+	SVA_B	Retroposon/SVA	58	1383	(0)	213602
7168	6.0	2.8	0.0	chr1	147103237	147104108	(101852314)	+	MER11D	LTR/ERVK	1	897	(0)	213663
7071	6.8	1.5	2.3	chr1	147232476	147234111	(101722311)	+	SVA_D	Retroposon/SVA	6	1386	(0)	213827
477	30.3	0.7	2.1	chr1	150548577	150548721	(98407701)	C	MIRb	SINE/MIR	(103)	165	23	219329
17	14.7	0.0	4.8	chr1	150548970	150549011	(98407411)	+	(GCCGC)n	Simple_repeat	1	42	(0)	219330
11	19.4	5.3	7.6	chr1	150974454	150974528	(97981894)	+	(CGCCTCC)n	Simple_repeat	1	79	(0)	220231
10272	4.4	1.2	7.4	chr1	151768667	151770134	(97186288)	C	SVA_C	Retroposon/SVA	(6)	1378	3	221871
1785	18.4	4.1	3.4	chr1	152078524	152079501	(96876921)	C	SVA_F	Retroposon/SVA	(518)	857	421	222366
558	14.5	1.2	0.0	chr1	152079502	152079584	(96876838)	C	AluSc	SINE/Alu	(225)	84	1	222367
10377	4.6	0.0	11.5	chr1	152144137	152145699	(96810723)	C	SVA_C	Retroposon/SVA	(1)	1383	1	222445
8432	5.7	0.7	23.6	chr1	152195472	152197269	(96759153)	C	SVA_C	Retroposon/SVA	(1)	1383	1	222519
9381	4.4	0.7	14.4	chr1	152255608	152257182	(96699240)	C	SVA_D	Retroposon/SVA	(23)	1363	7	222604
19	25.9	0.0	4.5	chr1	153958837	153958903	(94997519)	+	GA-rich	Low_complexity	1	67	(0)	225135
24	30.1	0.0	3.9	chr1	155051198	155051301	(93905121)	+	G-rich	Low_complexity	1	104	(0)	227264
4716	8.8	1.7	2.5	chr1	155642182	155643219	(93313203)	C	MER11A	LTR/ERVK	(0)	1266	1	228475
31	0.0	0.0	0.0	chr1	155648927	155648955	(93307467)	+	(T)n	Simple_repeat	1	29	(0)	228484
1847	15.8	0.0	1.8	chr1	155648959	155649243	(93307179)	C	AluSg	SINE/Alu	(28)	282	3	228485
14	16.7	0.0	5.3	chr1	155688320	155688357	(93268065)	+	(GGC)n	Simple_repeat	1	38	(0)	228557
16	13.3	0.0	5.4	chr1	155688680	155688722	(93267700)	+	(CCT)n	Simple_repeat	1	40	(0)	228558
12	18.8	2.6	2.6	chr1	156920241	156920278	(92036144)	+	(CCCCAGC)n	Simple_repeat	1	39	(0)	230987
346	6.6	0.0	0.0	chr1	159065266	159065326	(89891096)	+	SVA_F	Retroposon/SVA	493	553	(822)	233840
12	18.0	6.1	3.9	chr1	160400905	160400953	(88555469)	+	A-rich	Low_complexity	1	52	(0)	235701
6362	6.1	0.3	29.8	chr1	160531445	160533312	(88423110)	+	SVA_A	Retroposon/SVA	72	1387	(0)	235883
9342	6.9	0.9	11.2	chr1	160932625	160934166	(88022256)	+	SVA_B	Retroposon/SVA	1	1381	(2)	236497
9530	4.8	0.7	10.0	chr1	161028945	161030461	(87925961)	+	SVA_B	Retroposon/SVA	8	1381	(2)	236734
6644	8.0	2.8	2.5	chr1	161422259	161424316	(87532106)	+	SVA_D	Retroposon/SVA	14	1386	(0)	237516
1495	20.6	3.4	6.2	chr1	161472831	161473219	(87483203)	+	LTR12D	LTR/ERV1	757	1134	(120)	237605
30605	6.4	0.4	0.4	chr1	161473230	161478266	(87478156)	+	HERV9NC-int	LTR/ERV1	40	5284	(834)	237606
10555	4.7	0.4	5.8	chr1	161615956	161617417	(87339005)	C	SVA_C	Retroposon/SVA	(0)	1384	1	237817
264	17.4	2.1	0.0	chr1	162091940	162091985	(86864437)	C	Plat_L3	LINE/CR1	(2)	3584	3538	238587
251	27.3	0.0	6.1	chr1	162091988	162092069	(86864353)	C	MIR3	SINE/MIR	(42)	166	90	238588
5877	8.2	4.0	1.9	chr1	162450830	162451678	(86504744)	C	SVA_A	Retroposon/SVA	(0)	1387	520	239144
23053	4.2	0.3	0.7	chr1	162451679	162455318	(86501104)	+	L1PA4	LINE/L1	2533	6154	(1)	239143
10693	3.2	1.2	5.3	chr1	162465417	162466823	(86489599)	+	SVA_D	Retroposon/SVA	38	1386	(0)	239173
4720	10.6	3.8	39.0	chr1	163498008	163499808	(85456614)	C	SVA_A	Retroposon/SVA	(216)	1171	1	240850
20	13.9	7.0	1.6	chr1	164559013	164559069	(84397353)	+	(CCCTCCT)n	Simple_repeat	1	61	(0)	242315
37	7.2	3.4	0.0	chr1	164559076	164559134	(84397288)	+	(CCT)n	Simple_repeat	1	61	(0)	242316
17	18.2	0.0	0.0	chr1	164559329	164559359	(84397063)	+	G-rich	Low_complexity	1	31	(0)	242317
19	21.7	1.6	3.2	chr1	164559584	164559651	(84396771)	+	(CCCCTC)n	Simple_repeat	1	66	(0)	242318
10217	6.8	1.7	3.5	chr1	167805646	167807059	(81149363)	C	SVA_A	Retroposon/SVA	(0)	1387	1	247343
346	25.5	18.5	3.7	chr1	168623497	168623648	(80332774)	+	MIRc	SINE/MIR	6	175	(55)	248661
10486	5.9	1.2	2.6	chr1	168836733	168838135	(80118287)	+	SVA_B	Retroposon/SVA	2	1383	(0)	249025
12	4.7	0.0	7.7	chr1	171741943	171741968	(77214454)	+	(CGGG)n	Simple_repeat	1	26	(0)	253260
6861	5.8	2.6	4.6	chr1	174575712	174576627	(74379795)	C	MER11D	LTR/ERVK	(0)	897	1	257404
1036	15.1	1.0	5.0	chr1	174761014	174761215	(74195207)	C	THE1B	LTR/ERVL-MaLR	(0)	364	171	257638
17	7.9	0.0	0.0	chr1	174761216	174761242	(74195180)	+	(TTAT)n	Simple_repeat	1	27	(0)	257639
903	21.7	12.6	2.0	chr1	174761335	174761687	(74194735)	C	SVA_F	Retroposon/SVA	(539)	836	441	257640
1204	11.0	1.1	0.0	chr1	174761689	174761870	(74194552)	C	THE1B	LTR/ERVL-MaLR	(180)	184	1	257638
10277	2.6	0.2	17.5	chr1	179417990	179419665	(69536757)	C	SVA_D	Retroposon/SVA	(1)	1385	1	264818
258	25.4	0.0	0.0	chr1	179586108	179586166	(69370256)	C	HAL1ME	LINE/L1	(2285)	180	122	265037
20	0.0	0.0	0.0	chr1	179586177	179586198	(69370224)	+	(A)n	Simple_repeat	1	22	(0)	265038
26	16.7	3.3	0.0	chr1	179586273	179586332	(69370090)	+	(TCGGCGC)n	Simple_repeat	1	62	(0)	265039
10229	3.8	0.2	12.6	chr1	182010182	182011758	(66944664)	+	SVA_B	Retroposon/SVA	3	1383	(0)	268718
4548	7.1	2.8	1.5	chr1	182045245	182046257	(66910165)	C	MER11A	LTR/ERVK	(0)	1266	1	268763
6369	7.9	3.8	2.0	chr1	183427087	183427995	(65528427)	+	SVA_A	Retroposon/SVA	462	1387	(0)	271104
1131	8.4	2.7	1.7	chr1	187615672	187615852	(61340570)	+	SVA_F	Retroposon/SVA	433	615	(760)	277266
2154	11.6	6.3	55.5	chr1	187615853	187616306	(61340116)	+	SVA_F	Retroposon/SVA	421	857	(518)	277267
1885	13.7	6.8	1.0	chr1	187616307	187616798	(61339624)	+	SVA_F	Retroposon/SVA	421	857	(518)	277267
6555	7.9	3.8	2.7	chr1	187616766	187617725	(61338697)	+	SVA_A	Retroposon/SVA	404	1375	(12)	277267
8853	5.2	0.2	20.4	chr1	189225010	189226738	(59729684)	+	SVA_B	Retroposon/SVA	1	1380	(3)	279289
1759	18.8	2.6	0.7	chr1	193312180	193312477	(55643945)	C	AluJb	SINE/Alu	(8)	304	1	284684
1898	21.7	9.8	7.4	chr1	194415694	194415874	(54540548)	+	L1M4b	LINE/L1	5584	5806	(1200)	286119
7057	5.4	2.7	0.1	chr1	194415875	194416748	(54539674)	+	MER11D	LTR/ERVK	1	897	(0)	286121
27	0.0	0.0	0.0	chr1	196656968	196656993	(52299429)	+	(TTGT)n	Simple_repeat	1	26	(0)	288932
769	8.1	0.0	12.2	chr1	196656994	196657116	(52299306)	C	AluJo	SINE/Alu	(29)	283	176	288933
17	16.1	0.0	0.0	chr1	196657130	196657158	(52299264)	+	(T)n	Simple_repeat	1	29	(0)	288934
5702	8.2	6.2	0.2	chr1	198583647	198584483	(50371939)	C	SVA_A	Retroposon/SVA	(23)	1364	473	291422
1128	18.4	5.8	0.0	chr1	198584487	198584714	(50371708)	C	L1MB3	LINE/L1	(455)	5716	5475	291420
685	16.8	0.8	2.2	chr1	200955546	200955680	(48000742)	C	FLAM_C	SINE/Alu	(84)	218	9	295289
10406	4.2	0.5	3.8	chr1	202451193	202452602	(46503820)	C	SVA_D	Retroposon/SVA	(23)	1363	1	297938
297	28.4	3.8	1.0	chr1	202969247	202969349	(45987073)	C	MER94B	DNA/hAT-Blackjack	(4)	129	24	298832
10177	4.2	0.6	8.5	chr1	203841158	203842622	(45113800)	C	SVA_B	Retroposon/SVA	(2)	1381	34	300437
342	27.1	11.3	1.5	chr1	204162450	204162584	(44793838)	C	L2b	LINE/L2	(0)	3375	3226	301100
1131	14.5	0.0	0.0	chr1	205544722	205544893	(43411529)	C	AluSx	SINE/Alu	(12)	300	129	303646
796	14.9	0.0	4.1	chr1	205545014	205545160	(43411262)	C	SVA_F	Retroposon/SVA	(744)	631	491	303647
989	9.7	0.7	0.0	chr1	205545170	205545303	(43411119)	C	AluSx	SINE/Alu	(173)	139	5	303646
13	22.0	4.1	2.0	chr1	208243835	208243883	(40712539)	+	(CGCTCCG)n	Simple_repeat	1	51	(0)	307821
412	28.2	10.3	4.4	chr1	209577075	209577256	(39379166)	C	MIRc	SINE/MIR	(49)	219	26	309868
1619	17.6	4.0	5.5	chr1	211111288	211111820	(37844602)	+	SVA_F	Retroposon/SVA	422	857	(518)	312112
1747	19.9	6.1	4.5	chr1	211111787	211112399	(37844023)	+	SVA_F	Retroposon/SVA	421	857	(518)	312112
6189	6.7	1.0	11.0	chr1	211459830	211461479	(37494943)	+	SVA_D	Retroposon/SVA	132	1363	(23)	312725
2049	15.5	0.0	0.0	chr1	212189686	212189994	(36766428)	+	AluSx	SINE/Alu	1	309	(3)	314080
1498	29.7	8.2	3.8	chr1	212189995	212190046	(36766376)	+	MER115	DNA/hAT-Tip100	557	597	(96)	314079
1509	17.9	2.9	7.2	chr1	212190050	212190484	(36765938)	+	SVA_F	Retroposon/SVA	422	857	(518)	314081
12	27.6	3.9	0.0	chr1	212190510	212190561	(36765861)	+	(AAGTTTA)n	Simple_repeat	1	54	(0)	314082
10383	3.8	0.0	11.8	chr1	212724207	212725775	(36230647)	+	SVA_B	Retroposon/SVA	1	1383	(0)	315039
9721	3.3	0.0	26.6	chr1	220465687	220467569	(28488853)	C	SVA_D	Retroposon/SVA	(4)	1382	1	326262
31	9.2	0.0	0.0	chr1	220528033	220528079	(28428343)	+	(GGA)n	Simple_repeat	1	47	(0)	326370
13	13.2	6.7	4.2	chr1	220528171	220528215	(28428207)	+	(CGCGC)n	Simple_repeat	1	48	(0)	326371
15	23.4	2.8	5.4	chr1	220528499	220528570	(28427852)	+	(CCGCCTC)n	Simple_repeat	1	74	(0)	326372
7197	5.2	2.6	0.1	chr1	221196566	221197440	(27758982)	C	MER11D	LTR/ERVK	(0)	897	1	327310
5445	16.7	4.0	0.9	chr1	221197441	221197821	(27758601)	C	L1MB7	LINE/L1	(1552)	4594	4189	327309
316	27.9	9.8	2.3	chr1	221835631	221835762	(27120660)	+	MER5A	DNA/hAT-Charlie	8	150	(39)	328253
438	22.9	1.8	0.9	chr1	221835769	221835878	(27120544)	C	LTR33	LTR/ERVL	(7)	508	398	328254
368	27.3	2.4	0.0	chr1	221836080	221836200	(27120222)	C	LTR33	LTR/ERVL	(388)	127	4	328254
7294	5.2	3.0	0.0	chr1	223303543	223304412	(25652010)	C	MER11D	LTR/ERVK	(0)	897	1	330498
13	19.2	1.6	9.2	chr1	224929879	224929942	(24026480)	+	(GGCG)n	Simple_repeat	1	65	(0)	333381
255	30.2	10.5	0.0	chr1	225474923	225475041	(23481381)	+	MIR	SINE/MIR	27	159	(103)	334028
1684	12.5	13.1	0.4	chr1	225590202	225590473	(23365949)	+	AluSz6	SINE/Alu	1	312	(0)	334193
343	30.6	16.4	3.8	chr1	225590476	225590845	(23365577)	+	L2	LINE/L2	2340	2765	(654)	334194
10556	3.7	4.4	0.7	chr1	225615014	225616343	(23340079)	+	SVA_B	Retroposon/SVA	2	1383	(0)	334234
9381	6.8	7.8	0.5	chr1	225795593	225796836	(23159586)	C	SVA_A	Retroposon/SVA	(0)	1387	44	334596
282	25.4	2.7	0.0	chr1	225962681	225962751	(22993671)	C	MIR3	SINE/MIR	(72)	136	64	334901
1680	16.2	5.7	1.1	chr1	225968692	225968809	(22987613)	C	AluJb	SINE/Alu	(178)	134	3	334918
204	25.7	18.1	3.7	chr1	225968919	225969203	(22987219)	C	L2a	LINE/L2	(44)	3382	2989	334920
338	31.3	0.0	0.0	chr1	225969244	225969326	(22987096)	C	L2a	LINE/L2	(537)	2882	2800	334920
2062	9.0	0.0	0.0	chr1	225969332	225969586	(22986836)	+	AluSx	SINE/Alu	1	255	(57)	334921
1065	15.7	3.5	0.0	chr1	226814742	226814907	(22141515)	+	AluJo	SINE/Alu	129	300	(12)	336530
6146	7.5	2.9	5.2	chr1	227132148	227133957	(21822465)	+	SVA_D	Retroposon/SVA	32	1363	(23)	336971
9246	6.1	1.2	9.6	chr1	227275584	227277091	(21679331)	+	SVA_A	Retroposon/SVA	8	1387	(0)	337206
1983	14.2	0.7	0.3	chr1	227304141	227304429	(21651993)	+	AluSz6	SINE/Alu	17	306	(6)	337255
2224	18.6	3.2	2.1	chr1	227564047	227564512	(21391910)	C	MER57E3	LTR/ERV1	(16)	471	1	337651
13	11.6	4.9	4.7	chr1	228073778	228073818	(20882604)	+	(GCAGGCT)n	Simple_repeat	1	43	(0)	338257
2327	9.1	0.0	0.0	chr1	228621129	228621435	(20334987)	+	AluY	SINE/Alu	1	307	(4)	338912
40	29.6	0.0	0.0	chr1	228635559	228635667	(20320755)	+	(CA)n	Simple_repeat	1	109	(0)	338951
63	31.5	1.7	0.8	chr1	228635679	228635919	(20320503)	+	GA-rich	Low_complexity	1	245	(0)	338952
56	16.4	4.3	6.2	chr1	229411319	229411505	(19544917)	+	(CCCTCTC)n	Simple_repeat	1	195	(0)	340223
332	34.7	6.1	5.1	chr1	231185646	231185921	(17770501)	C	L2c	LINE/L2	(8)	3379	3101	343062
1684	17.3	14.0	1.7	chr1	231186360	231186764	(17769658)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	5	343063
6239	7.7	3.0	9.7	chr1	232331235	232333104	(16623318)	+	SVA_D	Retroposon/SVA	74	1386	(0)	344836
21	17.3	0.0	2.4	chr1	233613655	233613696	(15342726)	+	(CA)n	Simple_repeat	1	42	(0)	346666
28	18.4	2.9	1.4	chr1	233614033	233614102	(15342320)	+	G-rich	Low_complexity	1	72	(0)	346667
9931	2.7	0.0	21.0	chr1	235308441	235310193	(13646229)	+	SVA_D	Retroposon/SVA	1	1385	(1)	349462
15	4.8	0.0	0.0	chr1	236065014	236065035	(12891387)	+	(CAG)n	Simple_repeat	1	22	(0)	350913
16	3.8	0.0	6.5	chr1	236065203	236065233	(12891189)	+	(AGGGG)n	Simple_repeat	1	31	(0)	350914
2937	7.3	0.0	0.0	chr1	236096779	236097148	(12859274)	C	LTR10A	LTR/ERV1	(62)	547	178	350992
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
5697	7.8	4.1	4.8	chr1	236427982	236429218	(12527204)	C	SVA_B	Retroposon/SVA	(10)	1373	1	351600
4730	7.7	2.7	2.1	chr1	238326486	238327684	(10628738)	C	SVA_A	Retroposon/SVA	(0)	1387	31	354540
14	14.6	0.0	3.1	chr1	240091763	240091794	(8864628)	+	(GCG)n	Simple_repeat	1	32	(0)	357135
17	21.6	2.1	0.0	chr1	240091879	240091926	(8864496)	+	(AGCCGC)n	Simple_repeat	1	49	(0)	357136
15	16.7	2.9	0.0	chr1	240092260	240092293	(8864129)	+	(GGC)n	Simple_repeat	1	35	(0)	357137
562	32.5	11.3	2.7	chr1	241086485	241087141	(7869281)	+	L2c	LINE/L2	2649	3396	(30)	358708
16	15.1	2.6	2.5	chr1	243849367	243849405	(5107017)	+	(ACCC)n	Simple_repeat	1	40	(0)	363166
1611	17.4	0.0	1.4	chr1	244461823	244462103	(4494319)	C	AluJr	SINE/Alu	(21)	291	15	364218
3270	16.2	4.7	2.8	chr1	248863250	248863895	(92527)	+	MER52A	LTR/ERV1	1	659	(1096)	370901
24	14.3	0.0	0.0	chr10	6200660	6200698	(127596724)	+	(G)n	Simple_repeat	1	39	(0)	379100
9978	5.2	0.3	11.5	chr10	12225774	12227303	(121570119)	C	SVA_B	Retroposon/SVA	(13)	1370	5	388436
5987	7.9	2.4	45.4	chr10	12518510	12520925	(121276497)	C	SVA_E	Retroposon/SVA	(23)	1359	50	389092
388	24.8	3.6	1.5	chr10	12666851	12666985	(121130437)	C	MER102c	DNA/hAT-Charlie	(9)	322	185	389371
261	38.2	4.8	1.7	chr10	15499787	15499967	(118297455)	+	MLT1K	LTR/ERVL-MaLR	40	226	(369)	394372
464	25.3	20.2	0.5	chr10	15500010	15500204	(118297218)	+	MLT1K	LTR/ERVL-MaLR	305	547	(48)	394373
15	24.0	2.6	5.1	chr10	15500273	15500306	(118297116)	+	(TATGTA)n	Simple_repeat	1	34	(0)	394374
2549	13.5	3.3	0.2	chr10	15500307	15500721	(118296701)	+	MSTA	LTR/ERVL-MaLR	1	428	(0)	394375
18	0.0	0.0	0.0	chr10	17616645	17616664	(116180758)	+	(A)n	Simple_repeat	1	20	(0)	397751
15	25.3	1.5	4.5	chr10	17616954	17617019	(116180403)	+	(GCCCCCT)n	Simple_repeat	1	67	(0)	397752
6372	8.7	4.4	5.1	chr10	17628348	17630001	(116167421)	C	SVA_F	Retroposon/SVA	(0)	1375	70	397782
16	7.8	0.0	3.5	chr10	21173846	21173874	(112623548)	+	(CGG)n	Simple_repeat	1	29	(0)	403076
13	10.7	6.7	0.0	chr10	21173923	21173952	(112623470)	+	(GGCG)n	Simple_repeat	1	32	(0)	403077
18	11.2	0.0	6.8	chr10	21174033	21174090	(112623332)	+	(CTCCGG)n	Simple_repeat	1	54	(0)	403078
14	25.5	1.9	1.9	chr10	21174132	21174158	(112623264)	+	(CGCGCC)n	Simple_repeat	1	52	(0)	403079
12	8.8	4.2	0.0	chr10	21174159	21174182	(112623240)	+	(CCG)n	Simple_repeat	1	25	(0)	403080
9522	3.1	0.4	21.7	chr10	21836885	21838642	(111958780)	+	SVA_C	Retroposon/SVA	3	1383	(1)	404410
1601	26.5	8.5	2.6	chr10	26321644	26322228	(107475194)	C	L2a	LINE/L2	(2595)	824	202	411430
18	17.8	0.0	4.2	chr10	28677444	28677491	(105119931)	+	G-rich	Low_complexity	1	48	(0)	415552
1659	18.1	4.5	3.3	chr10	31361498	31362733	(102434689)	C	SVA_A	Retroposon/SVA	(515)	872	386	420212
647	9.6	1.2	0.0	chr10	31362744	31362826	(102434596)	C	AluSc	SINE/Alu	(225)	84	1	420213
10636	4.0	1.4	3.8	chr10	32232902	32234313	(101563109)	C	SVA_B	Retroposon/SVA	(0)	1383	6	421616
8232	5.3	1.0	20.4	chr10	32505209	32506876	(101290546)	C	SVA_A	Retroposon/SVA	(23)	1364	24	422069
1704	17.7	5.2	4.2	chr10	35362709	35363503	(98433919)	C	SVA_F	Retroposon/SVA	(520)	862	380	426495
219	22.4	7.9	3.3	chr10	43138046	43138105	(90659317)	C	MIR3	SINE/MIR	(56)	152	90	432986
8448	6.3	0.0	27.3	chr10	43242496	43244402	(90553020)	+	SVA_A	Retroposon/SVA	1	1387	(0)	433122
7256	6.3	0.7	26.3	chr10	43328804	43330634	(90466788)	+	SVA_A	Retroposon/SVA	30	1387	(0)	433261
9580	5.8	1.4	11.8	chr10	43445684	43447222	(90350200)	C	SVA_B	Retroposon/SVA	(4)	1379	2	433542
5873	7.5	4.2	2.3	chr10	43543819	43544652	(90252770)	+	SVA_A	Retroposon/SVA	535	1385	(2)	433755
5196	12.2	2.5	42.5	chr10	45346192	45347193	(88450229)	+	SVA_A	Retroposon/SVA	46	872	(515)	435958
1901	17.6	7.5	1.0	chr10	45347199	45347606	(88449816)	+	SVA_F	Retroposon/SVA	421	857	(518)	435958
6485	11.9	3.9	53.9	chr10	45347613	45349205	(88448217)	+	SVA_A	Retroposon/SVA	421	1385	(2)	435959
10601	3.0	0.0	17.1	chr10	45391054	45392724	(88404698)	+	SVA_D	Retroposon/SVA	1	1386	(0)	436002
6303	8.2	2.2	2.0	chr10	45864810	45866421	(87931001)	C	SVA_C	Retroposon/SVA	(13)	1370	1	436741
10857	3.5	0.2	13.5	chr10	49969752	49971348	(83826074)	+	SVA_C	Retroposon/SVA	1	1384	(0)	442646
9213	5.2	4.5	1.1	chr10	50355274	50356582	(83440840)	+	SVA_B	Retroposon/SVA	29	1383	(0)	443227
7125	4.9	2.9	0.2	chr10	51580893	51581765	(82215657)	C	MER11D	LTR/ERVK	(0)	897	1	445030
220	34.6	4.5	9.1	chr10	53517340	53517549	(80279873)	C	L2c	LINE/L2	(906)	2513	2314	447703
776	28.3	2.3	3.6	chr10	53517570	53517583	(80279839)	C	MER58A	DNA/hAT-Charlie	(0)	224	213	447704
6959	5.0	3.0	0.3	chr10	53517584	53518453	(80278969)	+	MER11D	LTR/ERVK	1	894	(3)	447705
274	27.0	4.8	2.9	chr10	55400338	55400440	(78396982)	+	MLT1I	LTR/ERVL-MaLR	303	407	(4)	450122
7698	6.3	0.1	19.9	chr10	58243370	58245058	(75552364)	+	SVA_A	Retroposon/SVA	34	1387	(0)	453852
10073	4.9	0.8	7.8	chr10	59743661	59745125	(74052297)	+	SVA_B	Retroposon/SVA	22	1383	(0)	456028
9416	7.4	6.2	0.2	chr10	62928267	62929554	(70867868)	C	SVA_A	Retroposon/SVA	(0)	1387	18	460836
277	32.6	4.3	8.3	chr10	64624957	64625100	(69172322)	C	MIRc	SINE/MIR	(123)	145	8	463667
289	28.6	7.9	6.2	chr10	64625283	64625394	(69172028)	+	Charlie4z	DNA/hAT-Charlie	20	133	(34)	463668
3960	12.1	7.1	5.3	chr10	65657509	65658458	(68138964)	+	MER11A	LTR/ERVK	201	1264	(2)	465015
20	24.9	1.8	0.0	chr10	67885083	67885139	(65912283)	+	(ACG)n	Simple_repeat	1	58	(0)	468132
5926	7.0	3.2	3.1	chr10	68279318	68280258	(65517164)	+	SVA_C	Retroposon/SVA	344	1361	(23)	468839
16	18.9	0.0	0.0	chr10	68527338	68527373	(65270049)	+	(GCCGCC)n	Simple_repeat	1	36	(0)	469455
12	0.0	4.3	4.2	chr10	69123850	69123872	(64673550)	+	(TCCT)n	Simple_repeat	1	24	(0)	470925
6227	10.1	3.9	53.0	chr10	70238076	70240789	(63556633)	C	SVA_A	Retroposon/SVA	(1)	1386	1	473016
3429	14.0	0.2	2.9	chr10	70629907	70630465	(63166957)	+	Tigger2	DNA/TcMar-Tigger	532	1075	(1643)	473848
9724	2.9	0.5	15.1	chr10	70630468	70632007	(63165415)	+	SVA_D	Retroposon/SVA	71	1384	(2)	473849
31	0.0	0.0	0.0	chr10	73494276	73494304	(60303118)	+	(TTTTGT)n	Simple_repeat	1	29	(0)	479395
1933	13.4	0.0	2.8	chr10	73494305	73494594	(60302828)	C	AluSz6	SINE/Alu	(30)	282	1	479396
15	5.6	0.0	0.0	chr10	73494651	73494669	(60302753)	+	(A)n	Simple_repeat	1	19	(0)	479397
6959	6.5	1.8	6.3	chr10	73689014	73690625	(60106797)	+	SVA_D	Retroposon/SVA	56	1387	(0)	479787
9349	3.8	0.2	20.6	chr10	75749629	75751367	(58046055)	C	SVA_B	Retroposon/SVA	(0)	1383	1	483541
760	30.4	8.6	3.4	chr10	76689003	76689444	(57107978)	C	MLT1G1	LTR/ERVL-MaLR	(0)	579	113	484830
191	16.9	12.1	8.5	chr10	80144062	80144143	(53653279)	C	MIRc	SINE/MIR	(129)	79	1	490749
2678	13.1	14.3	0.4	chr10	80378672	80379154	(53418268)	C	Tigger1	DNA/TcMar-Tigger	(0)	2418	1858	491113
9461	4.5	9.5	8.3	chr10	84179880	84181186	(49616236)	C	SVA_B	Retroposon/SVA	(0)	1383	1	496440
15	4.1	4.0	0.0	chr10	84655497	84655521	(49141901)	+	(TTTA)n	Simple_repeat	1	26	(0)	497164
431	10.8	2.6	0.0	chr10	84655617	84655690	(49141732)	C	SVA_F	Retroposon/SVA	(787)	588	513	497165
307	30.4	5.3	0.0	chr10	84655763	84655887	(49141535)	+	L1MC	LINE/L1	5123	5254	(892)	497166
8270	2.9	0.0	32.7	chr10	87079906	87081963	(46715459)	+	SVA_D	Retroposon/SVA	1	1385	(1)	500690
6646	8.2	3.6	4.5	chr10	91322509	91324272	(42473150)	C	SVA_D	Retroposon/SVA	(1)	1385	38	507146
17	13.2	0.0	0.0	chr10	92239505	92239537	(41557885)	+	(CACACC)n	Simple_repeat	1	33	(0)	508663
13	16.6	0.0	0.0	chr10	92239646	92239672	(41557750)	+	(GGC)n	Simple_repeat	1	27	(0)	508664
7184	4.5	2.7	0.2	chr10	92912284	92913158	(40884264)	C	MER11D	LTR/ERVK	(0)	897	1	510129
15	22.1	2.0	2.0	chr10	97334636	97334684	(36462738)	+	(CGGAGC)n	Simple_repeat	1	50	(0)	517743
5972	6.2	2.8	12.2	chr10	97527497	97529792	(36267630)	C	SVA_D	Retroposon/SVA	(23)	1363	4	518157
310	28.5	0.0	0.7	chr10	97764516	97764624	(36032798)	+	MLT1J	LTR/ERVL-MaLR	100	271	(339)	518674
10474	2.0	0.0	15.7	chr10	99891150	99892776	(33904646)	+	SVA_F	Retroposon/SVA	3	1374	(1)	522272
5387	8.6	2.6	6.9	chr10	100276470	100277650	(33519772)	+	SVA_D	Retroposon/SVA	1	870	(517)	523067
12	4.7	0.0	7.7	chr10	101050378	101050403	(32747019)	+	(CGCC)n	Simple_repeat	1	26	(0)	524384
471	15.8	0.0	0.0	chr10	101380483	101380564	(32416858)	C	SVA_F	Retroposon/SVA	(783)	592	511	525009
454	29.4	5.1	6.8	chr10	101380705	101380769	(32416653)	+	MIRc	SINE/MIR	11	76	(192)	525010
1435	19.1	9.5	0.9	chr10	101380770	101381087	(32416335)	C	Tigger3a	DNA/TcMar-Tigger	(0)	348	1	525011
15	17.0	6.2	2.0	chr10	101694328	101694375	(32103047)	+	G-rich	Low_complexity	1	51	(0)	525476
19	4.0	0.0	0.0	chr10	101694598	101694623	(32102799)	+	(CCT)n	Simple_repeat	1	26	(0)	525477
9499	5.3	1.0	10.1	chr10	102035380	102036886	(31760536)	+	SVA_F	Retroposon/SVA	7	1375	(0)	526140
17	27.9	0.0	4.3	chr10	103493767	103493836	(30303586)	+	G-rich	Low_complexity	1	70	(0)	529080
16	24.2	3.3	1.6	chr10	103494089	103494148	(30303274)	+	(GCCCCG)n	Simple_repeat	1	62	(0)	529081
10419	2.5	0.0	18.9	chr10	103606461	103608170	(30189252)	+	SVA_D	Retroposon/SVA	1	1386	(0)	529293
17	9.7	2.9	2.8	chr10	104536589	104536623	(29260799)	+	G-rich	Low_complexity	1	36	(0)	530876
420	28.2	1.7	0.0	chr10	117148484	117148600	(16648822)	+	Eulor2C	DNA?	2	120	(49)	549955
21	3.5	0.0	0.0	chr10	117148705	117148733	(16648689)	+	(TGTT)n	Simple_repeat	1	29	(0)	549956
1999	13.0	0.4	0.0	chr10	117149018	117149287	(16648135)	C	AluSz6	SINE/Alu	(41)	271	1	549957
17	17.2	0.0	5.9	chr10	118754402	118754452	(15042970)	+	(TGGAGG)n	Simple_repeat	1	51	(0)	552539
14	28.8	0.0	0.0	chr10	118754436	118754481	(15042941)	+	(GGC)n	Simple_repeat	1	46	(0)	552540
10078	3.6	1.2	10.5	chr10	118894963	118896427	(14900995)	+	SVA_C	Retroposon/SVA	57	1383	(1)	552799
7039	5.8	1.8	1.1	chr10	119260410	119261944	(14535478)	C	SVA_D	Retroposon/SVA	(5)	1381	1	553574
16	13.3	2.1	6.2	chr10	119651217	119651263	(14146159)	+	(CCGCGC)n	Simple_repeat	1	48	(0)	554324
14	19.3	1.6	7.9	chr10	119651591	119651652	(14145770)	+	(GCCCGC)n	Simple_repeat	1	63	(0)	554325
1419	23.6	8.1	3.7	chr10	120797424	120797942	(12999480)	+	L1M5	LINE/L1	2227	2770	(3376)	556216
10236	5.1	1.3	3.5	chr10	120797944	120799331	(12998091)	+	SVA_B	Retroposon/SVA	27	1383	(0)	556217
230	37.6	3.4	1.1	chr10	121043642	121043816	(12753606)	+	OldhAT1	DNA/hAT-Ac	831	1009	(1839)	556548
18	10.5	0.0	0.0	chr10	121975069	121975099	(11822323)	+	(GGGAGC)n	Simple_repeat	1	31	(0)	558054
14	15.2	0.0	7.1	chr10	121975098	121975152	(11822270)	+	(GGCCGC)n	Simple_repeat	1	51	(0)	558055
12	24.2	3.5	3.4	chr10	121975232	121975288	(11822134)	+	(GCGCCA)n	Simple_repeat	1	59	(0)	558056
13	14.0	4.7	4.4	chr10	122374765	122374807	(11422615)	+	(GCCGCG)n	Simple_repeat	1	45	(0)	558776
288	25.8	7.9	6.5	chr10	122811266	122811464	(10985958)	+	L2a	LINE/L2	3225	3426	(0)	559371
743	20.1	3.0	0.2	chr10	123254330	123255943	(10541479)	+	(CAC)n	Simple_repeat	1	1663	(0)	560024
543	34.5	5.7	2.0	chr10	123718316	123718617	(10078805)	+	MLT1K	LTR/ERVL-MaLR	26	339	(256)	560799
815	24.0	6.1	9.3	chr10	123718633	123718986	(10078436)	C	MLT1H2	LTR/ERVL-MaLR	(8)	481	140	560800
2722	21.7	1.9	1.0	chr10	123719003	123719700	(10077722)	C	L1ME1	LINE/L1	(253)	5926	5214	560801
16	10.1	2.9	2.9	chr10	124917084	124917117	(8880305)	+	(GGC)n	Simple_repeat	1	35	(0)	562765
39	2.6	0.0	0.0	chr10	124917175	124917214	(8880208)	+	(CGC)n	Simple_repeat	1	40	(0)	562766
17	16.4	0.0	0.0	chr10	124917226	124917259	(8880163)	+	GA-rich	Low_complexity	1	34	(0)	562767
16	22.7	0.0	0.0	chr10	125896669	125896709	(7900713)	+	G-rich	Low_complexity	1	41	(0)	564165
8965	5.6	11.1	1.5	chr10	125969623	125970870	(7826552)	C	SVA_B	Retroposon/SVA	(0)	1383	1	564291
13	24.9	2.9	5.6	chr10	126905328	126905396	(6892026)	+	(CCGTC)n	Simple_repeat	1	71	(0)	565517
10356	5.7	1.9	1.2	chr10	126994331	126995692	(6801730)	C	SVA_B	Retroposon/SVA	(11)	1372	1	565657
207	31.9	7.5	6.3	chr10	128251421	128251620	(5545802)	+	L2c	LINE/L2	3045	3242	(133)	567220
226	20.0	0.0	0.0	chr10	128251690	128251729	(5545693)	+	MER5A	DNA/hAT-Charlie	147	186	(3)	567221
337	29.0	21.4	0.4	chr10	132294039	132294498	(1502924)	C	L2	LINE/L2	(993)	2426	1844	571487
284	20.4	2.3	2.1	chr10	133520013	133520101	(277321)	+	L1ME3D	LINE/L1	5963	6055	(188)	572594
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
8770	8.0	3.4	1.4	chr11	516842	518179	(134568443)	+	SVA_A	Retroposon/SVA	20	1385	(2)	573497
2079	13.8	0.0	2.0	chr11	918380	918683	(134167939)	+	AluSq2	SINE/Alu	8	305	(8)	574097
1424	20.6	2.4	7.0	chr11	918684	918794	(134167828)	+	MLT1B	LTR/ERVL-MaLR	179	273	(117)	574096
2626	4.3	0.0	0.0	chr11	918795	919096	(134167526)	C	AluY	SINE/Alu	(9)	302	1	574098
16	11.6	0.0	0.0	chr11	1255308	1255335	(133831287)	+	(CGCA)n	Simple_repeat	1	28	(0)	574416
13	22.4	0.0	4.4	chr11	1460237	1460281	(133626341)	+	(CACAGCG)n	Simple_repeat	1	45	(0)	574628
12	29.1	3.6	0.0	chr11	1460280	1460334	(133626288)	+	(GCCGCCC)n	Simple_repeat	1	57	(0)	574629
21	28.6	3.7	3.6	chr11	1460382	1460444	(133626178)	+	(TTCT)n	Simple_repeat	1	112	(0)	574630
24	9.7	0.0	0.0	chr11	1460445	1460489	(133626133)	+	(T)n	Simple_repeat	1	45	(0)	574631
13	22.9	1.8	5.3	chr11	1460765	1460826	(133625796)	+	(CCGC)n	Simple_repeat	1	59	(0)	574632
9725	4.4	0.4	12.9	chr11	8522752	8524329	(126562293)	+	SVA_B	Retroposon/SVA	1	1380	(3)	584072
11	25.0	5.6	4.0	chr11	13668410	13668481	(121418141)	+	(CTCCCG)n	Simple_repeat	1	76	(0)	592645
27	20.0	2.8	1.4	chr11	16606190	16606263	(118480359)	+	(TTTCTTT)n	Simple_repeat	1	75	(0)	597232
9846	12.3	5.0	0.3	chr11	16635118	16636622	(118450000)	+	THE1C-int	LTR/ERVL-MaLR	1	1580	(0)	597256
10215	5.4	0.2	8.6	chr11	16887356	16888864	(118197758)	+	SVA_C	Retroposon/SVA	2	1384	(0)	597643
7070	7.4	1.6	5.0	chr11	17049598	17051527	(118035095)	C	SVA_F	Retroposon/SVA	(0)	1375	57	597949
268	26.1	1.4	0.0	chr11	17599329	17599397	(117487225)	C	L3	LINE/CR1	(235)	3864	3795	599027
194	32.5	3.8	1.3	chr11	17599409	17599486	(117487136)	C	L2c	LINE/L2	(1)	3374	3295	599028
458	24.1	7.9	0.0	chr11	18321821	18321936	(116764686)	C	L2b	LINE/L2	(0)	3375	3250	600254
9045	4.5	1.1	11.5	chr11	20862609	20864141	(114222481)	C	SVA_C	Retroposon/SVA	(0)	1384	13	604586
6594	7.4	3.0	0.1	chr11	26316119	26316989	(108769633)	C	MER11D	LTR/ERVK	(0)	897	1	612296
12	11.9	0.0	6.5	chr11	31817774	31817804	(103268818)	+	G-rich	Low_complexity	1	31	(0)	620447
10544	3.5	0.1	10.7	chr11	33243048	33244593	(101842029)	+	SVA_B	Retroposon/SVA	1	1382	(1)	623127
27	3.5	0.0	0.0	chr11	33869482	33869511	(101217111)	+	(CGC)n	Simple_repeat	1	30	(0)	624189
17383	10.4	2.3	1.9	chr11	36672663	36672826	(98413796)	+	HUERS-P3b-int	LTR/ERV1	6784	6945	(473)	628762
1353	20.0	0.4	1.6	chr11	36673097	36673388	(98413234)	+	HUERS-P3b-int	LTR/ERV1	8701	8919	(0)	628762
253	0.0	0.0	0.0	chr11	36673389	36673420	(98413202)	+	LTR9C	LTR/ERV1	1	32	(634)	628762
22743	8.9	1.2	1.6	chr11	36673423	36676385	(98410237)	+	L1PA5	LINE/L1	4	2979	(3167)	628766
6776	7.7	0.0	28.5	chr11	37430463	37432343	(97654279)	C	SVA_A	Retroposon/SVA	(0)	1387	43	629849
491	27.7	2.2	5.3	chr11	46238837	46239023	(88847599)	C	MIR	SINE/MIR	(78)	184	4	643570
13	21.3	4.5	5.7	chr11	46918203	46918269	(88168353)	+	G-rich	Low_complexity	1	70	(0)	644903
566	25.4	2.3	3.6	chr11	47400745	47400965	(87685657)	+	L1M5	LINE/L1	5255	5472	(771)	645825
6675	4.9	0.7	22.0	chr11	49797729	49799249	(85287373)	C	SVA_C	Retroposon/SVA	(186)	1198	4	649560
7855	2.7	0.0	36.2	chr11	57715582	57717753	(77368869)	C	SVA_D	Retroposon/SVA	(0)	1386	1	654332
7029	6.7	2.7	2.8	chr11	59584937	59586183	(75500439)	+	SVA_D	Retroposon/SVA	70	1386	(0)	657025
2337	8.6	0.0	1.0	chr11	59809996	59810308	(75276314)	C	AluSx1	SINE/Alu	(2)	310	1	657476
10233	5.5	0.4	6.3	chr11	60072516	60073986	(75012636)	C	SVA_C	Retroposon/SVA	(0)	1384	1	657855
6236	5.6	1.4	8.3	chr11	60450724	60452415	(74634207)	+	SVA_F	Retroposon/SVA	57	1375	(0)	658380
14	15.3	0.0	0.0	chr11	61161177	61161205	(73925417)	+	(CCTC)n	Simple_repeat	1	29	(0)	659602
22	27.2	3.5	4.2	chr11	61161308	61161421	(73925201)	+	(GCC)n	Simple_repeat	1	118	(0)	659603
218	31.4	5.5	7.1	chr11	61792007	61792276	(73294346)	C	L2c	LINE/L2	(18)	3369	3084	660847
2469	9.0	0.0	0.3	chr11	62311415	62311726	(72774896)	+	AluSq10	SINE/Alu	1	311	(2)	661814
12	15.8	0.0	3.3	chr11	63763345	63763374	(71323248)	+	G-rich	Low_complexity	1	30	(0)	664331
18	7.7	0.0	0.0	chr11	63763374	63763401	(71323221)	+	(CCGAC)n	Simple_repeat	1	28	(0)	664332
23	14.9	2.2	0.0	chr11	63763731	63763775	(71322847)	+	(CGG)n	Simple_repeat	1	46	(0)	664333
27	23.1	3.4	2.2	chr11	63764004	63764092	(71322530)	+	(CTC)n	Simple_repeat	1	92	(0)	664334
17	17.2	2.6	0.0	chr11	63764420	63764458	(71322164)	+	(CCT)n	Simple_repeat	1	40	(0)	664335
6565	8.7	2.2	3.3	chr11	65450419	65452466	(69634156)	+	SVA_D	Retroposon/SVA	53	1384	(2)	667551
10857	2.9	0.3	10.2	chr11	65762192	65763728	(69322894)	C	SVA_D	Retroposon/SVA	(0)	1386	2	668132
13	31.5	0.0	3.2	chr11	65961813	65961874	(69124748)	+	(GGC)n	Simple_repeat	1	62	(0)	668549
12	29.2	4.7	3.4	chr11	65961917	65962001	(69124621)	+	(GCGGAA)n	Simple_repeat	1	89	(0)	668550
747	11.8	0.0	0.0	chr11	65962239	65962340	(69124282)	+	AluJo	SINE/Alu	193	294	(18)	668551
6391	4.1	0.9	36.8	chr11	66587016	66589110	(68497512)	+	SVA_F	Retroposon/SVA	47	1383	(1)	669859
6314	8.3	2.6	1.5	chr11	67597479	67598695	(67487927)	C	SVA_C	Retroposon/SVA	(0)	1384	204	671970
5988	9.2	4.2	1.6	chr11	70456290	70457214	(64629408)	C	SVA_A	Retroposon/SVA	(0)	1387	438	676892
7299	5.2	1.1	25.4	chr11	72909040	72910840	(62175782)	+	SVA_A	Retroposon/SVA	30	1387	(0)	680835
198	32.1	0.0	3.5	chr11	73383570	73383607	(61703015)	C	L2b	LINE/L2	(14)	3361	3327	681735
347	30.2	8.3	0.0	chr11	73383608	73383760	(61702862)	+	MIRb	SINE/MIR	3	175	(93)	681736
185	26.8	0.0	0.0	chr11	73384362	73384402	(61702220)	C	L2c	LINE/L2	(23)	3352	3312	681737
216	29.7	0.0	4.5	chr11	73384407	73384473	(61702149)	C	MIR1_Amn	SINE/MIR	(55)	175	112	681738
324	24.1	2.4	1.2	chr11	73384478	73384561	(61702061)	C	MIRb	SINE/MIR	(22)	246	162	681739
12	4.1	3.5	6.7	chr11	73384565	73384593	(61702029)	+	(CAGAG)n	Simple_repeat	1	30	(0)	681740
363	33.9	10.8	0.6	chr11	73412890	73413064	(61673558)	+	MIR3	SINE/MIR	8	202	(6)	681777
10117	3.0	0.3	17.7	chr11	73571213	73572892	(61513730)	+	SVA_D	Retroposon/SVA	1	1386	(0)	682140
10235	4.5	0.0	11.2	chr11	73774382	73775940	(61310682)	+	SVA_C	Retroposon/SVA	1	1384	(0)	682640
6207	9.6	4.9	4.9	chr11	73935626	73937666	(61148956)	C	SVA_D	Retroposon/SVA	(20)	1366	53	683077
6842	6.7	2.9	4.0	chr11	74128568	74130129	(60956493)	C	SVA_D	Retroposon/SVA	(23)	1364	1	683482
403	23.1	9.6	5.6	chr11	76207387	76207557	(58879065)	C	MIR	SINE/MIR	(52)	216	21	687528
10704	3.8	0.6	5.3	chr11	76581923	76583356	(58503266)	C	SVA_C	Retroposon/SVA	(17)	1367	2	688265
6589	10.3	4.0	55.4	chr11	78879005	78880470	(56206152)	+	SVA_A	Retroposon/SVA	421	1387	(0)	692812
7841	2.4	0.7	38.5	chr11	83315619	83317851	(51768771)	C	SVA_D	Retroposon/SVA	(3)	1383	1	700434
228	36.3	7.5	1.5	chr11	84390935	84391071	(50695551)	C	MLT1J2	LTR/ERVL-MaLR	(226)	222	77	702228
10127	5.2	4.5	0.8	chr11	85852347	85853675	(49232947)	+	SVA_C	Retroposon/SVA	2	1382	(2)	704504
218	28.4	3.9	0.0	chr11	85854743	85854816	(49231806)	C	MIR3	SINE/MIR	(47)	161	85	704507
10255	2.8	0.9	15.5	chr11	86731529	86733153	(48353469)	+	SVA_D	Retroposon/SVA	1	1386	(0)	706024
652	17.1	1.4	4.2	chr11	90218723	90218887	(44867735)	+	SVA_F	Retroposon/SVA	421	592	(783)	711169
7792	3.1	0.2	0.2	chr11	92949235	92950131	(42136491)	C	MER11D	LTR/ERVK	(0)	897	1	714884
24	20.3	2.0	0.0	chr11	93197514	93197564	(41889058)	+	(CA)n	Simple_repeat	1	52	(0)	715243
16	17.0	0.0	0.0	chr11	93197794	93197826	(41888796)	+	(CGC)n	Simple_repeat	1	33	(0)	715244
7025	6.9	1.9	4.9	chr11	93946087	93948225	(41138397)	C	SVA_F	Retroposon/SVA	(0)	1375	57	716443
26226	2.5	0.4	0.0	chr11	94232525	94238528	(40848094)	C	L1PA2	LINE/L1	(3)	6152	124	716864
212	25.8	11.9	4.3	chr11	94965287	94965379	(40121243)	+	L2a	LINE/L2	3153	3253	(173)	717928
664	31.2	7.8	7.0	chr11	95093194	95093662	(39992960)	+	L2c	LINE/L2	2910	3382	(5)	718117
3250	10.3	11.0	0.8	chr11	95904375	95904871	(39181751)	+	MER41A	LTR/ERV1	1	554	(0)	719314
518	31.8	5.5	2.8	chr11	95904888	95905169	(39181453)	+	L2-3_Crp	LINE/L2	716	1005	(1091)	719315
332	22.9	2.7	11.4	chr11	95905171	95905293	(39181329)	+	L2	LINE/L2	2213	2324	(1095)	719312
7007	5.3	2.8	0.0	chr11	100031208	100032063	(35054559)	+	MER11D	LTR/ERVK	17	897	(0)	724556
14	20.9	4.3	2.0	chr11	102110476	102110522	(32976100)	+	GA-rich	Low_complexity	1	49	(0)	727405
18	21.2	4.8	1.5	chr11	102110645	102110706	(32975916)	+	(GGAGGC)n	Simple_repeat	1	65	(0)	727406
8836	4.8	0.1	20.2	chr11	107911771	107913485	(27173137)	+	SVA_F	Retroposon/SVA	1	1369	(6)	735824
2030	14.7	0.0	1.9	chr11	107938453	107938765	(27147857)	+	AluJb	SINE/Alu	6	312	(0)	735886
10947	2.6	0.8	15.6	chr11	112026328	112027951	(23058671)	C	SVA_D	Retroposon/SVA	(4)	1382	1	742392
22	10.2	4.8	0.0	chr11	112205952	112205993	(22880629)	+	(TTAA)n	Simple_repeat	1	44	(0)	742747
11	27.2	4.1	0.0	chr11	112205977	112206025	(22880597)	+	A-rich	Low_complexity	1	51	(0)	742748
1210	24.9	5.8	5.5	chr11	112206081	112206610	(22880012)	C	SVA_B	Retroposon/SVA	(656)	727	196	742749
8413	4.8	15.7	1.1	chr11	113523635	113524816	(21561806)	+	SVA_A	Retroposon/SVA	1	1387	(0)	744698
5073	13.7	3.5	1.6	chr11	116147577	116148397	(18938225)	+	LTR1A2	LTR/ERV1	1	837	(0)	748772
13619	17.1	5.5	4.8	chr11	116148398	116148805	(18937817)	+	L1MD1	LINE/L1	2299	2728	(3809)	748768
10254	2.4	0.5	18.7	chr11	116346378	116348067	(18738555)	+	SVA_C	Retroposon/SVA	4	1384	(0)	749130
185	25.3	4.6	12.6	chr11	118927520	118927614	(16159008)	C	MIRc	SINE/MIR	(4)	264	178	753876
334	27.2	5.8	0.9	chr11	118927620	118927734	(16158888)	C	MIRb	SINE/MIR	(35)	233	113	753877
9596	3.8	0.7	13.2	chr11	118990993	118992558	(16094064)	C	SVA_B	Retroposon/SVA	(0)	1383	15	754040
10521	3.2	3.3	0.7	chr11	119058618	119059958	(16026664)	C	SVA_C	Retroposon/SVA	(0)	1384	7	754176
23	5.4	4.9	2.3	chr11	120211311	120211351	(14875271)	+	(CTG)n	Simple_repeat	1	43	(0)	756150
13	22.3	4.1	2.0	chr11	120211399	120211447	(14875175)	+	(CGGACAG)n	Simple_repeat	1	51	(0)	756151
214	24.1	1.8	0.0	chr11	121464895	121464948	(13621674)	+	L3b	LINE/CR1	4993	5047	(185)	758159
5453	10.0	1.9	8.8	chr11	125862247	125864038	(9222584)	+	SVA_F	Retroposon/SVA	57	866	(518)	765160
11	26.1	0.0	5.8	chr11	128906033	128906084	(6180538)	+	(CACCCC)n	Simple_repeat	1	52	(0)	769553
509	27.9	13.6	0.5	chr11	128906100	128906297	(6180325)	C	MIRb	SINE/MIR	(6)	262	35	769554
5089	9.8	4.0	2.8	chr11	129128568	129129672	(5956950)	+	SVA_B	Retroposon/SVA	20	1006	(377)	769864
396	32.7	1.9	1.0	chr11	129129688	129129842	(5956780)	C	L1M5	LINE/L1	(572)	5611	5456	769865
23	15.4	2.5	4.9	chr11	130314765	130314825	(4771797)	+	G-rich	Low_complexity	1	59	(0)	771694
19	14.1	0.0	4.7	chr11	130314827	130314869	(4771753)	+	(GCC)n	Simple_repeat	1	43	(0)	771695
16	8.9	0.0	9.3	chr11	130314958	130315000	(4771622)	+	G-rich	Low_complexity	1	43	(0)	771696
1837	13.4	0.4	1.8	chr11	134050260	134050536	(1036086)	+	AluJb	SINE/Alu	21	293	(19)	776715
47	5.6	0.0	0.0	chr11	134051021	134051076	(1035546)	+	(TGCG)n	Simple_repeat	1	56	(0)	776716
548	2.3	1.2	1.4	chr12	10001	10585	(133264724)	+	(CTAACC)n	Simple_repeat	1	592	(0)	778084
280	33.6	6.1	0.0	chr12	2255710	2255816	(131019493)	C	L2b	LINE/L2	(6)	3369	3256	781930
327	34.1	1.5	0.8	chr12	2256139	2256271	(131019038)	+	MER5A	DNA/hAT-Charlie	51	184	(5)	781931
844	15.4	0.0	0.0	chr12	2845869	2845998	(130429311)	C	FLAM_A	SINE/Alu	(10)	132	3	782761
350	28.1	4.7	0.0	chr12	2846505	2846625	(130428684)	+	MIR3	SINE/MIR	78	204	(4)	782762
410	29.2	1.4	5.3	chr12	6493551	6493702	(126781607)	C	MIRb	SINE/MIR	(82)	186	41	788828
6378	6.4	2.8	4.7	chr12	7199204	7200899	(126074410)	C	SVA_D	Retroposon/SVA	(0)	1386	34	790087
14	22.2	2.3	2.2	chr12	7440325	7440368	(125834941)	+	(GCC)n	Simple_repeat	1	45	(0)	790385
307	4.8	5.2	0.0	chr12	7440440	7440488	(125834821)	C	L1PA8A	LINE/L1	(301)	5830	5776	790386
372	37.7	3.9	1.8	chr12	8451854	8452080	(124823229)	+	MamGypLTR1c	LTR/Gypsy	543	774	(29)	792296
12	18.4	0.0	3.0	chr12	8452083	8452115	(124823194)	+	A-rich	Low_complexity	1	33	(0)	792297
403	12.4	18.6	0.9	chr12	8452191	8452296	(124823013)	C	SVA_F	Retroposon/SVA	(822)	553	425	792298
5414	8.7	1.8	4.9	chr12	8624321	8625515	(124649794)	+	SVA_D	Retroposon/SVA	1	868	(518)	792594
4945	5.5	2.9	2.6	chr12	11458369	11459019	(121816290)	+	SVA_A	Retroposon/SVA	735	1387	(0)	796508
588	26.0	6.1	3.4	chr12	12268096	12268302	(121007007)	C	MIRc	SINE/MIR	(37)	231	19	797794
588	33.4	9.1	5.2	chr12	12510579	12511220	(120764089)	C	L2b	LINE/L2	(9)	3366	2701	798263
13	20.0	0.0	2.8	chr12	12611924	12611959	(120663350)	+	GA-rich	Low_complexity	1	36	(0)	798443
15	24.0	3.2	3.1	chr12	12612098	12612159	(120663150)	+	G-rich	Low_complexity	1	64	(0)	798444
10466	5.0	1.0	3.4	chr12	12617682	12619084	(120656225)	C	SVA_B	Retroposon/SVA	(13)	1370	1	798454
393	29.3	4.1	0.8	chr12	15688185	15688301	(117587008)	C	MIRb	SINE/MIR	(51)	217	97	803140
5038	11.5	7.7	0.3	chr12	15688314	15689073	(117586236)	+	LTR1A2	LTR/ERV1	17	837	(0)	803141
2149	12.1	0.7	0.0	chr12	17097227	17097508	(116177801)	C	AluSx	SINE/Alu	(24)	288	5	805103
241	31.9	0.8	0.8	chr12	17097512	17097631	(116177678)	C	MLT1J-int	LTR/ERVL-MaLR	(653)	734	615	805100
237	37.0	2.8	1.4	chr12	17097913	17098052	(116177257)	C	MLT1J-int	LTR/ERVL-MaLR	(876)	511	370	805100
11059	3.2	1.2	3.2	chr12	24925568	24926968	(108348341)	+	SVA_C	Retroposon/SVA	7	1378	(6)	815655
20	8.0	0.0	0.0	chr12	26124959	26124985	(107150324)	+	(CA)n	Simple_repeat	1	27	(0)	817539
12	33.5	0.0	0.0	chr12	26125102	26125153	(107150156)	+	G-rich	Low_complexity	1	52	(0)	817540
1072	19.1	1.7	4.9	chr12	26608383	26608717	(106666592)	+	SVA_F	Retroposon/SVA	421	857	(518)	818220
16	0.0	0.0	0.0	chr12	26608787	26608804	(106666505)	+	(A)n	Simple_repeat	1	18	(0)	818221
2075	14.4	9.7	0.0	chr12	29171035	29171387	(104103922)	C	HERV9N-int	LTR/ERV1	(5198)	3059	2669	822010
1732	19.5	4.5	54.0	chr12	29171396	29172260	(104103049)	+	SVA_E	Retroposon/SVA	428	864	(518)	822011
789	18.5	6.1	3.4	chr12	29172076	29172282	(104103027)	+	SVA_F	Retroposon/SVA	395	607	(780)	822012
10169	2.8	0.1	16.1	chr12	32562415	32564061	(100711248)	C	SVA_D	Retroposon/SVA	(3)	1383	1	827699
6848	7.3	3.2	0.0	chr12	38122839	38123706	(95151603)	+	MER11D	LTR/ERVK	1	897	(0)	830716
6249	8.8	2.6	0.0	chr12	38129276	38130125	(95145184)	+	MER11D	LTR/ERVK	25	897	(0)	830716
10178	3.4	0.6	12.8	chr12	38329743	38331314	(94943995)	C	SVA_C	Retroposon/SVA	(4)	1380	3	830970
236	9.5	0.0	0.0	chr12	39498310	39498351	(93776958)	+	SVA_F	Retroposon/SVA	511	552	(823)	832549
9958	3.2	0.3	12.5	chr12	40352470	40354032	(92921277)	C	SVA_C	Retroposon/SVA	(9)	1375	4	833681
1634	18.7	4.4	38.2	chr12	45585519	45586858	(87688451)	C	SVA_F	Retroposon/SVA	(518)	868	381	841028
6956	12.7	2.0	1.4	chr12	45586860	45588001	(87687308)	+	ERVL-B4-int	LTR/ERVL	4609	5757	(0)	841027
7080	5.3	1.3	11.6	chr12	46000001	46001131	(87274178)	+	SVA_A	Retroposon/SVA	375	1387	(0)	841713
15	7.9	7.4	0.0	chr12	47820442	47820468	(85454841)	+	(AC)n	Simple_repeat	1	29	(0)	844248
542	27.3	0.8	0.0	chr12	47902115	47902246	(85373063)	+	MER94	DNA/hAT-Blackjack	1	133	(1)	844398
10606	5.7	7.2	0.8	chr12	48551213	48552504	(84722805)	+	SVA_C	Retroposon/SVA	3	1384	(0)	845331
5938	9.0	3.0	59.2	chr12	48641329	48642867	(84632442)	+	SVA_A	Retroposon/SVA	1	1010	(377)	845456
9825	2.2	0.7	23.4	chr12	49860209	49862000	(83413309)	+	SVA_D	Retroposon/SVA	5	1386	(0)	847953
3947	9.8	0.2	1.8	chr12	50911840	50912387	(82362922)	C	LTR17	LTR/ERV1	(0)	780	242	850222
3761	6.4	2.3	1.4	chr12	50912380	50913092	(82362217)	C	MER11A	LTR/ERVK	(305)	961	1	850223
15	32.3	0.0	1.6	chr12	51083338	51083400	(82191909)	+	(CCG)n	Simple_repeat	1	63	(0)	850560
2078	14.0	0.0	0.0	chr12	53370433	53370732	(79904577)	+	AluSz	SINE/Alu	7	306	(6)	854608
12	14.9	8.1	0.0	chr12	53371096	53371132	(79904177)	+	(CTCCT)n	Simple_repeat	1	40	(0)	854609
13	8.5	4.0	0.0	chr12	54017052	54017076	(79258233)	+	(GGGGA)n	Simple_repeat	1	26	(0)	855759
9695	2.2	0.0	23.8	chr12	54487481	54489299	(78786010)	C	SVA_D	Retroposon/SVA	(0)	1386	1	856528
9973	3.0	0.4	17.0	chr12	55478464	55480124	(77795185)	C	SVA_D	Retroposon/SVA	(2)	1384	1	857798
19	10.9	5.0	0.0	chr12	55745572	55745611	(77529698)	+	G-rich	Low_complexity	1	42	(0)	858164
17	14.0	0.0	0.0	chr12	55745711	55745771	(77529538)	+	(CCTCC)n	Simple_repeat	1	61	(0)	858165
2373	9.0	0.0	0.7	chr12	55826908	55827208	(77448101)	+	AluSx3	SINE/Alu	1	299	(12)	858320
9681	5.8	0.5	9.8	chr12	56878757	56880233	(76395076)	+	SVA_B	Retroposon/SVA	45	1383	(0)	860420
11	29.5	1.6	3.2	chr12	57086554	57086614	(76188695)	+	(TCTTTG)n	Simple_repeat	1	62	(0)	860678
2055	15.7	0.0	0.0	chr12	57454140	57454433	(75820876)	+	AluJo	SINE/Alu	6	299	(13)	861359
12	5.6	0.0	0.0	chr12	57454604	57454622	(75820687)	+	(CAC)n	Simple_repeat	1	19	(0)	861360
6491	7.7	2.0	6.0	chr12	57494520	57496031	(75779278)	C	SVA_B	Retroposon/SVA	(13)	1370	21	861417
6207	7.0	3.1	4.5	chr12	57506851	57508670	(75766639)	C	SVA_D	Retroposon/SVA	(0)	1386	32	861441
38	17.2	0.0	0.0	chr12	57522713	57522784	(75752525)	+	(GGC)n	Simple_repeat	1	72	(0)	861463
22	31.3	1.7	3.4	chr12	57523024	57523140	(75752169)	+	(CCCCGC)n	Simple_repeat	1	119	(0)	861464
7003	5.9	0.0	27.9	chr12	57664489	57666343	(75608966)	+	SVA_A	Retroposon/SVA	51	1387	(0)	861640
8542	7.1	1.3	16.1	chr12	62010136	62011764	(71263545)	+	SVA_A	Retroposon/SVA	4	1387	(0)	867305
2389	11.6	0.3	0.0	chr12	64222943	64223243	(69052066)	C	AluSz	SINE/Alu	(10)	302	1	870686
4913	7.9	2.5	5.3	chr12	66133961	66135094	(67140215)	+	SVA_F	Retroposon/SVA	57	862	(520)	873864
276	24.2	0.0	0.0	chr12	66160583	66160648	(67114661)	C	Tigger10	DNA/TcMar-Tigger	(1174)	670	605	873903
1289	14.9	4.6	3.7	chr12	66160760	66161117	(67114192)	C	SVA_F	Retroposon/SVA	(515)	872	421	873904
8739	8.0	3.7	0.2	chr12	66174418	66175731	(67099578)	+	SVA_A	Retroposon/SVA	27	1387	(0)	873931
629	28.4	6.0	2.0	chr12	66584741	66584995	(66690314)	+	L2	LINE/L2	1345	1610	(1809)	874585
13	19.5	0.0	2.7	chr12	66585031	66585067	(66690242)	+	(TTTTA)n	Simple_repeat	1	37	(0)	874586
6848	1.5	0.0	0.0	chr12	66585103	66585917	(66689392)	C	L1PA2	LINE/L1	(1)	6154	5340	874587
21	32.9	0.8	4.1	chr12	67269580	67269701	(66005608)	+	(GCGGCG)n	Simple_repeat	1	123	(0)	875650
1219	26.6	3.0	1.2	chr12	68297910	68298335	(64976974)	+	L1PBa	LINE/L1	926	1359	(5504)	877149
1946	14.8	1.6	0.0	chr12	68298330	68298647	(64976662)	+	L1PBa	LINE/L1	732	1054	(5862)	877150
6039	14.3	5.3	2.3	chr12	68298654	68301255	(64974054)	+	L1PBa	LINE/L1	1179	3861	(3054)	877150
5838	7.0	4.2	0.9	chr12	69374416	69375914	(63899395)	C	SVA_B	Retroposon/SVA	(7)	1376	31	879155
10067	4.3	0.9	5.5	chr12	69758992	69760436	(63514873)	C	SVA_C	Retroposon/SVA	(7)	1377	1	879868
6475	9.6	5.7	35.1	chr12	69806580	69807956	(63467353)	C	SVA_A	Retroposon/SVA	(0)	1387	395	879915
13469	4.1	0.2	0.4	chr12	69807959	69810425	(63464884)	C	L1P1	LINE/L1	(3063)	3083	623	879916
7634	3.4	0.4	24.4	chr12	69852587	69854334	(63420975)	C	SVA_B	Retroposon/SVA	(0)	1383	57	879992
13	12.8	2.6	5.1	chr12	70242939	70242976	(63032333)	+	(GGAGTGA)n	Simple_repeat	1	39	(0)	880614
27	6.1	0.0	0.0	chr12	70242991	70243025	(63032284)	+	(AACACA)n	Simple_repeat	1	35	(0)	880615
14	18.3	2.7	0.0	chr12	71439343	71439379	(61835930)	+	(TTTTG)n	Simple_repeat	1	38	(0)	882308
12	7.9	7.4	0.0	chr12	71439625	71439651	(61835658)	+	(CTGC)n	Simple_repeat	1	29	(0)	882309
729	19.6	0.1	2.4	chr12	83086150	83086329	(50188980)	C	SVA_F	Retroposon/SVA	(726)	649	439	898665
388	22.9	4.0	2.0	chr12	83086328	83086425	(50188884)	C	MER5B	DNA/hAT-Charlie	(78)	100	1	898666
351	16.7	5.2	3.2	chr12	83086448	83086553	(50188756)	+	MIR3	SINE/MIR	44	151	(79)	898667
6970	7.1	2.2	1.4	chr12	89503111	89504621	(43770688)	+	SVA_C	Retroposon/SVA	25	1384	(0)	907127
21	16.8	6.5	1.5	chr12	92145536	92145597	(41129712)	+	(GGC)n	Simple_repeat	1	66	(0)	911015
180	22.0	3.8	5.7	chr12	95003876	95003928	(38271381)	+	Penelope1_Vert	LINE/Penelope	880	931	(156)	916302
13	10.1	9.4	0.0	chr12	95790271	95790302	(37485007)	+	(GCA)n	Simple_repeat	1	35	(0)	917876
14	25.8	3.6	0.0	chr12	95790434	95790488	(37484821)	+	G-rich	Low_complexity	1	57	(0)	917877
253	28.3	6.4	15.2	chr12	96906710	96907005	(36368304)	+	L2b	LINE/L2	3139	3396	(30)	919870
23	13.8	0.0	0.0	chr12	98457029	98457068	(34818241)	+	(CAG)n	Simple_repeat	1	40	(0)	922247
6534	6.0	4.2	6.2	chr12	102088711	102089782	(31185527)	C	SVA_A	Retroposon/SVA	(0)	1387	395	928542
786	28.0	0.0	10.1	chr12	102089784	102090081	(31185228)	C	L1ME3A	LINE/L1	(350)	5823	5556	928541
4222	9.2	7.3	4.0	chr12	105095211	105096151	(28179158)	C	MER11A	LTR/ERVK	(134)	1132	1	933829
9643	4.6	0.5	19.7	chr12	108655352	108657065	(24618244)	+	SVA_C	Retroposon/SVA	1	1384	(0)	940747
16	16.0	2.2	4.3	chr12	110281725	110281770	(22993539)	+	(GAGGC)n	Simple_repeat	1	47	(0)	944415
6340	7.2	2.1	6.6	chr12	110949973	110951917	(22323392)	C	SVA_D	Retroposon/SVA	(10)	1376	1	945977
5292	11.2	2.1	4.3	chr12	111723484	111724852	(21550457)	C	SVA_F	Retroposon/SVA	(518)	857	2	947757
6641	7.4	3.2	0.2	chr12	111994326	111995195	(21280114)	C	MER11D	LTR/ERVK	(0)	897	1	948265
1424	24.8	8.5	7.4	chr12	111995196	111995461	(21279848)	+	L1ME3B	LINE/L1	4741	4984	(1162)	948258
1475	16.7	10.8	0.4	chr12	112418286	112418543	(20856766)	C	AluJb	SINE/Alu	(24)	288	1	949168
373	23.0	2.9	9.9	chr12	112418544	112418648	(20856661)	C	MIR	SINE/MIR	(110)	152	56	949169
14	25.4	3.0	4.4	chr12	112418853	112418936	(20856373)	+	(GGC)n	Simple_repeat	1	82	(0)	949170
13	15.7	8.1	4.5	chr12	114684550	114684611	(18590698)	+	(GAGGCAG)n	Simple_repeat	1	67	(0)	954268
785	19.3	14.1	4.7	chr12	115597202	115597413	(17677896)	C	MLT1H	LTR/ERVL-MaLR	(7)	542	308	956355
17	15.3	0.0	0.0	chr12	115597457	115597485	(17677824)	+	A-rich	Low_complexity	1	29	(0)	956356
172	15.9	4.9	4.2	chr12	116737305	116737777	(16537532)	+	GA-rich	Low_complexity	1	496	(0)	958800
19	14.8	3.5	5.0	chr12	116737904	116737961	(16537348)	+	(GGCGCGG)n	Simple_repeat	1	60	(0)	958801
279	21.2	6.1	0.0	chr12	117099045	117099163	(16176146)	C	MIRc	SINE/MIR	(75)	193	56	959563
33	16.5	1.1	6.5	chr12	117968829	117968920	(15306389)	+	(TGC)n	Simple_repeat	1	93	(0)	961512
13	18.8	0.0	5.0	chr12	117968993	117969032	(15306277)	+	G-rich	Low_complexity	1	40	(0)	961513
12	5.5	0.0	0.0	chr12	117969131	117969149	(15306160)	+	(GGA)n	Simple_repeat	1	19	(0)	961514
19	21.7	1.8	1.8	chr12	117969235	117969289	(15306020)	+	(GCGA)n	Simple_repeat	1	56	(0)	961515
9346	7.4	0.6	12.3	chr12	120277491	120279061	(12996248)	C	SVA_A	Retroposon/SVA	(1)	1386	1	966590
18	16.8	2.5	0.0	chr12	120687327	120687366	(12587943)	+	(GCT)n	Simple_repeat	1	41	(0)	967692
15	18.9	6.2	0.0	chr12	120687385	120687432	(12587877)	+	(GGCGC)n	Simple_repeat	1	51	(0)	967693
6727	5.7	1.3	3.3	chr12	120731660	120733265	(12542044)	C	SVA_D	Retroposon/SVA	(23)	1363	3	967760
20	10.8	5.0	0.0	chr12	121580570	121580609	(11694700)	+	G-rich	Low_complexity	1	42	(0)	969721
508	25.7	1.4	3.5	chr12	121889188	121889328	(11385981)	C	MIR	SINE/MIR	(2)	260	123	970593
1136	26.4	7.7	1.0	chr12	122064182	122064568	(11210741)	+	MLT1K	LTR/ERVL-MaLR	145	559	(36)	971015
897	19.8	6.0	0.0	chr12	122064652	122064838	(11210471)	+	MIR	SINE/MIR	64	262	(0)	971016
9222	2.9	0.3	25.5	chr12	122356602	122358455	(10916854)	+	SVA_D	Retroposon/SVA	1	1386	(0)	971612
17	23.3	6.8	0.0	chr12	122752353	122752411	(10522898)	+	GA-rich	Low_complexity	1	63	(0)	972609
6317	11.6	14.8	2.6	chr12	123371665	123372857	(9902452)	+	SVA_F	Retroposon/SVA	13	1375	(0)	973907
2255	9.6	0.0	0.0	chr12	124733808	124734089	(8541220)	C	AluSx	SINE/Alu	(30)	282	1	976700
2089	13.8	0.0	0.0	chr12	124734090	124734385	(8540924)	C	AluJo	SINE/Alu	(16)	296	1	976701
462	25.5	11.6	0.7	chr12	124734584	124734729	(8540580)	C	MLT1J	LTR/ERVL-MaLR	(489)	164	1	976695
1526	29.3	5.2	0.0	chr12	124829147	124829734	(8445575)	+	L2a	LINE/L2	2537	3163	(263)	976925
13	23.0	7.1	0.0	chr12	125065504	125065559	(8209750)	+	(GGTCCCT)n	Simple_repeat	1	60	(0)	977507
670	25.5	5.4	0.5	chr12	125207060	125207283	(8068026)	+	MER102a	DNA/hAT-Charlie	5	240	(101)	977783
266	26.7	17.9	1.0	chr12	125207293	125207394	(8067915)	C	L2a	LINE/L2	(5)	3421	3299	977784
706	20.2	0.5	14.6	chr12	125207450	125207560	(8067749)	+	MER3	DNA/hAT-Charlie	18	127	(82)	977785
217	33.1	4.1	6.7	chr12	131066509	131066657	(2208652)	C	L2b	LINE/L2	(5)	3370	3226	987695
262	28.9	6.5	1.2	chr12	131066828	131066988	(2208321)	C	L2b	LINE/L2	(443)	2976	2807	987695
387	29.1	7.0	0.9	chr12	131067101	131067315	(2207994)	C	L2b	LINE/L2	(860)	2559	2331	987695
327	27.3	2.5	1.5	chr12	132213188	132213382	(1061927)	+	MLT2C1	LTR/ERVL	229	522	(41)	989224
64	23.6	0.7	0.0	chr12	132213459	132213611	(1061698)	+	(CACACA)n	Simple_repeat	1	154	(0)	989225
642	28.6	14.1	3.7	chr12	132295367	132295715	(979594)	+	MLT1C	LTR/ERVL-MaLR	1	391	(114)	989304
293	23.8	1.2	1.2	chr12	132296186	132296266	(979043)	+	MLT1C	LTR/ERVL-MaLR	379	459	(8)	989304
238	33.3	0.8	0.8	chr12	132380324	132380450	(894859)	C	L1MC5a	LINE/L1	(785)	1992	1866	989396
359	36.6	6.0	2.8	chr12	132380473	132380907	(894402)	+	HAL1b	LINE/L1	1111	1560	(861)	989393
438	21.4	7.9	0.0	chr12	132593866	132594005	(681304)	+	L1MEc	LINE/L1	2085	2236	(4164)	989633
416	27.5	6.2	0.7	chr12	132594238	132594424	(680885)	+	L1MEc	LINE/L1	2325	2521	(3798)	989633
439	18.3	1.9	0.9	chr12	132762410	132762514	(512795)	+	AluJb	SINE/Alu	2	107	(205)	989910
291	7.7	0.0	0.0	chr12	132762515	132762553	(512756)	C	MADE1	DNA/TcMar-Mariner	(41)	39	1	989911
3692	9.8	7.8	0.2	chr12	133079464	133079975	(195334)	+	MER41A	LTR/ERV1	1	554	(0)	990480
6260	10.2	6.0	59.1	chr13	18835788	18837773	(95526555)	C	SVA_A	Retroposon/SVA	(3)	1384	347	991593
9591	3.1	0.0	21.1	chr13	21185715	21187456	(93176872)	C	SVA_F	Retroposon/SVA	(1)	1374	1	995700
13	21.8	2.7	0.0	chr13	21671291	21671327	(92693001)	+	(TTA)n	Simple_repeat	1	38	(0)	996500
10578	3.1	0.5	10.9	chr13	22858410	22859953	(91504375)	C	SVA_D	Retroposon/SVA	(3)	1383	1	998016
5488	6.8	1.4	0.0	chr13	22983846	22984463	(91379865)	C	MER11D	LTR/ERVK	(267)	630	3	998174
7504	7.5	3.3	3.0	chr13	23971924	23973101	(90391227)	C	SVA_D	Retroposon/SVA	(4)	1382	272	999600
4964	8.3	1.9	2.5	chr13	24731223	24732254	(89632074)	C	MER11A	LTR/ERVK	(0)	1266	6	1000730
15	12.0	0.0	3.3	chr13	25019650	25019679	(89344649)	+	GA-rich	Low_complexity	1	30	(0)	1001166
17	15.1	2.7	0.0	chr13	25019745	25019781	(89344547)	+	(TGGT)n	Simple_repeat	1	38	(0)	1001167
849	10.2	0.0	0.0	chr13	25019794	25019901	(89344427)	C	AluSz	SINE/Alu	(204)	108	1	1001168
744	7.4	4.0	0.0	chr13	25019930	25020050	(89344278)	C	SVA_F	Retroposon/SVA	(730)	645	520	1001169
20	16.3	3.3	4.8	chr13	25171211	25171270	(89193058)	+	(GCC)n	Simple_repeat	1	62	(0)	1001408
31	19.1	3.9	0.0	chr13	26254168	26254244	(88110084)	+	(TGAG)n	Simple_repeat	1	80	(0)	1002972
16	24.0	2.0	0.0	chr13	26254578	26254626	(88109702)	+	(CCCCGGC)n	Simple_repeat	1	50	(0)	1002973
339	17.0	9.7	0.9	chr13	28503127	28503239	(85861089)	C	MIR3	SINE/MIR	(1)	207	84	1006848
759	27.9	3.6	0.4	chr13	28503527	28503767	(85860561)	+	MIR	SINE/MIR	10	258	(4)	1006849
1071	34.2	1.1	0.8	chr13	28804889	28805248	(85559080)	+	LTR16E2	LTR/ERVL	7	367	(201)	1007356
421	20.1	2.7	3.2	chr13	28805331	28805453	(85558875)	C	SVA_F	Retroposon/SVA	(823)	552	457	1007357
443	28.6	4.8	8.0	chr13	28805450	28805688	(85558640)	+	LTR16E2	LTR/ERVL	338	568	(0)	1007356
18	0.0	0.0	0.0	chr13	30307395	30307416	(84056912)	+	(GCC)n	Simple_repeat	1	22	(0)	1009431
187	30.4	11.5	5.0	chr13	31424083	31424203	(82940125)	+	MIRc	SINE/MIR	136	265	(3)	1011276
436	25.6	21.7	1.1	chr13	31424483	31424668	(82939660)	+	MIRb	SINE/MIR	11	245	(23)	1011277
8236	2.0	0.0	33.5	chr13	32715625	32717706	(81646622)	+	SVA_D	Retroposon/SVA	1	1385	(1)	1013252
8589	4.3	0.5	21.9	chr13	32720649	32722378	(81641950)	C	SVA_B	Retroposon/SVA	(6)	1377	21	1013262
7759	9.2	10.0	1.2	chr13	33241566	33242770	(81121558)	+	SVA_F	Retroposon/SVA	54	1375	(0)	1014013
11047	4.2	1.6	0.7	chr13	35966476	35967846	(78396482)	+	SVA_B	Retroposon/SVA	1	1383	(0)	1017876
11	17.8	0.0	2.9	chr13	40664790	40664807	(73699521)	+	(CGCCCC)n	Simple_repeat	1	17	(0)	1024465
30	0.0	0.0	0.0	chr13	40664808	40664835	(73699493)	+	(CGCCAC)n	Simple_repeat	1	28	(0)	1024466
11	17.8	0.0	2.9	chr13	40664836	40664851	(73699477)	+	(CGCCCC)n	Simple_repeat	6	21	(0)	1024467
15	18.3	0.0	2.6	chr13	40789604	40789642	(73574686)	+	(GAGCCG)n	Simple_repeat	1	39	(0)	1024731
5972	6.7	2.1	33.7	chr13	40899770	40901912	(73462416)	+	SVA_D	Retroposon/SVA	50	1386	(0)	1024867
5608	8.5	3.3	8.7	chr13	41881381	41882843	(72481485)	C	SVA_D	Retroposon/SVA	(307)	1080	1	1026495
5159	4.4	3.8	2.6	chr13	42476260	42476986	(71887342)	+	SVA_A	Retroposon/SVA	648	1383	(4)	1027421
6053	5.4	0.0	32.4	chr13	43415369	43417193	(70947135)	C	SVA_A	Retroposon/SVA	(13)	1374	68	1028849
2566	19.7	8.6	8.2	chr13	43864748	43865371	(70498957)	+	MER21C	LTR/ERVL	168	800	(138)	1029437
10132	2.7	0.0	17.9	chr13	44681786	44683450	(69680878)	C	SVA_D	Retroposon/SVA	(23)	1363	1	1030746
422	30.4	10.1	9.8	chr13	45119509	45119884	(69244444)	C	L2c	LINE/L2	(78)	3309	2933	1031629
10461	5.5	0.9	1.1	chr13	46162265	46163652	(68200676)	+	SVA_C	Retroposon/SVA	1	1384	(0)	1033443
291	12.8	9.3	0.0	chr13	48001541	48001602	(66362726)	+	MIRc	SINE/MIR	67	148	(82)	1036090
275	30.4	2.5	0.0	chr13	48001606	48001684	(66362644)	C	L2a	LINE/L2	(5)	3421	3341	1036091
23	20.5	4.4	4.2	chr13	49220073	49220163	(65144165)	+	G-rich	Low_complexity	1	95	(0)	1037997
14	23.7	1.9	3.6	chr13	49220195	49220248	(65144080)	+	(GCGCA)n	Simple_repeat	1	55	(0)	1037998
8917	2.9	0.1	17.8	chr13	49761202	49762874	(64601454)	+	SVA_C	Retroposon/SVA	1	1377	(7)	1038986
864	18.8	5.8	1.8	chr13	51849938	51850102	(62514226)	+	AluJr	SINE/Alu	5	176	(136)	1042198
335	22.1	0.0	0.0	chr13	51850123	51850190	(62514138)	C	L1M5	LINE/L1	(1527)	4619	4552	1042199
27	0.0	0.0	0.0	chr13	52600454	52600479	(61763849)	+	(GCCCA)n	Simple_repeat	1	26	(0)	1043341
7000	5.3	2.8	0.0	chr13	58241104	58241973	(56122355)	+	MER11D	LTR/ERVK	3	897	(0)	1050505
1151	16.0	1.1	3.1	chr13	60205528	60205788	(54158540)	+	SVA_F	Retroposon/SVA	395	666	(709)	1053170
386	28.7	11.1	1.4	chr13	60205874	60206011	(54158317)	C	MIRb	SINE/MIR	(80)	188	36	1053171
2320	12.0	8.2	1.3	chr13	63902752	63903148	(50461180)	C	MSTA	LTR/ERVL-MaLR	(1)	427	1	1057865
1897	21.9	8.5	2.6	chr13	64346451	64346930	(50017398)	+	L1MD1	LINE/L1	6040	6551	(82)	1058414
2184	11.5	0.7	0.7	chr13	64346931	64347226	(50017102)	+	AluY	SINE/Alu	1	296	(15)	1058415
5783	12.9	0.8	0.6	chr13	65717092	65718741	(48645587)	C	L1PB2	LINE/L1	(0)	6151	4499	1060140
6113	15.9	0.5	0.7	chr13	65926675	65927645	(48436683)	C	LTR1D	LTR/ERV1	(0)	975	7	1060398
552	30.4	10.2	0.7	chr13	66993893	66994514	(47369814)	C	LTR50	LTR/ERVL	(0)	795	2	1061719
23	25.0	1.8	0.0	chr13	67230277	67230331	(47133997)	+	(CT)n	Simple_repeat	1	56	(0)	1062005
7865	7.0	19.8	0.2	chr13	68170797	68172063	(46192265)	+	LTR12C	LTR/ERV1	3	1579	(0)	1063192
4526	8.9	5.0	1.7	chr13	69017914	69018944	(45345384)	C	MER11A	LTR/ERVK	(0)	1266	1	1064257
811	27.3	6.0	6.2	chr13	70853364	70853830	(43510498)	C	L1MEf	LINE/L1	(5481)	1159	701	1066706
2444	8.4	0.0	0.6	chr13	70853895	70854205	(43510123)	C	AluYj4	SINE/Alu	(2)	309	1	1066708
3869	14.3	0.3	3.4	chr13	75135473	75136094	(39228234)	C	LTR26	LTR/ERV1	(0)	603	1	1072883
19	13.9	3.9	3.8	chr13	75482400	75482450	(38881878)	+	(TCCT)n	Simple_repeat	1	53	(0)	1073409
20	16.2	0.0	2.3	chr13	75549747	75549789	(38814539)	+	(GGC)n	Simple_repeat	1	43	(0)	1073544
4527	9.6	3.3	1.6	chr13	76575306	76576312	(37788016)	+	MER11A	LTR/ERVK	1	1266	(0)	1074924
28	26.9	2.1	1.0	chr13	77026662	77026756	(37337572)	+	(CCGCC)n	Simple_repeat	1	97	(0)	1075600
6979	7.6	15.2	2.5	chr13	77109706	77110805	(37253523)	+	MER11A	LTR/ERVK	1	1266	(0)	1075718
1709	17.9	4.4	21.5	chr13	77659981	77661320	(36703008)	C	SVA_A	Retroposon/SVA	(515)	872	421	1076534
615	12.1	1.2	0.0	chr13	77661321	77661403	(36702925)	C	AluSc	SINE/Alu	(225)	84	1	1076535
15	23.9	0.9	4.4	chr13	78603149	78603224	(35761104)	+	G-rich	Low_complexity	1	73	(0)	1077763
20	25.9	1.4	2.7	chr13	78603413	78603484	(35760844)	+	(GCT)n	Simple_repeat	1	73	(0)	1077764
12	16.6	0.0	0.0	chr13	79795325	79795351	(34568977)	+	A-rich	Low_complexity	1	27	(0)	1079430
269	20.6	4.2	0.0	chr13	81146448	81146515	(33217813)	+	Charlie8	DNA/hAT-Charlie	143	213	(2215)	1081178
611	17.2	3.0	2.5	chr13	81146688	81146846	(33217482)	C	SVA_F	Retroposon/SVA	(761)	614	471	1081179
2280	13.5	2.6	0.5	chr13	81146851	81147222	(33217106)	C	THE1D	LTR/ERVL-MaLR	(0)	381	2	1081180
4487	8.7	3.9	1.9	chr13	82317183	82318183	(32046145)	C	MER11A	LTR/ERVK	(0)	1266	1	1082614
10210	4.7	0.4	3.9	chr13	85340127	85341555	(29022773)	C	SVA_B	Retroposon/SVA	(3)	1380	1	1086413
9739	6.2	1.6	1.2	chr13	87561118	87562428	(26801900)	+	SVA_B	Retroposon/SVA	53	1371	(12)	1089159
6433	9.8	2.2	5.0	chr13	87975608	87977515	(26386813)	C	SVA_D	Retroposon/SVA	(0)	1386	71	1089740
3568	12.8	4.3	3.3	chr13	88434625	88435577	(25928751)	+	MER11A	LTR/ERVK	1	1057	(14)	1090305
691	21.4	0.0	1.7	chr13	88435597	88435772	(25928556)	C	L1M3	LINE/L1	(1770)	4373	4201	1090304
820	17.4	0.0	4.3	chr13	88852379	88852584	(25511744)	C	SVA_F	Retroposon/SVA	(710)	665	432	1090846
2002	21.2	4.1	10.2	chr13	88852601	88853419	(25510909)	+	L1MB1	LINE/L1	2413	3187	(3451)	1090844
13	25.9	3.9	0.0	chr13	93233775	93233825	(21130503)	+	G-rich	Low_complexity	1	53	(0)	1096617
1225	24.1	6.4	5.2	chr13	93233868	93234391	(21129937)	+	LTR55	LTR/ERVL?	16	546	(2)	1096618
325	32.0	4.3	4.3	chr13	93804779	93804941	(20559387)	+	MIRc	SINE/MIR	43	205	(63)	1097375
365	21.9	5.3	8.6	chr13	96053795	96053929	(18310399)	+	MER5B	DNA/hAT-Charlie	6	135	(43)	1101024
13	13.4	6.1	0.0	chr13	97141833	97141865	(17222463)	+	(CAGAGG)n	Simple_repeat	1	35	(0)	1102578
5042	6.0	1.1	2.6	chr13	97774443	97775510	(16588818)	+	SVA_A	Retroposon/SVA	9	1385	(2)	1103467
7187	5.2	3.4	0.3	chr13	99568515	99569384	(14794944)	C	MER11D	LTR/ERVK	(0)	897	1	1106451
10275	4.0	0.3	10.1	chr13	109310878	109312399	(5051929)	+	SVA_B	Retroposon/SVA	11	1383	(0)	1119878
442	28.1	4.1	0.6	chr13	110834493	110834657	(3529671)	+	MER5B	DNA/hAT-Charlie	5	175	(3)	1121831
579	26.9	1.2	0.0	chr13	110834666	110834825	(3529503)	+	MER5A1	DNA/hAT-Charlie	1	162	(4)	1121832
2609	22.9	6.6	8.2	chr13	113211685	113212501	(1151827)	C	L1ME1	LINE/L1	(452)	5727	4960	1124332
2176	4.0	0.0	0.0	chr14	19668195	19668466	(87375252)	+	L1PA6	LINE/L1	5515	5786	(368)	1127019
16	28.9	0.0	3.2	chr14	19668474	19668535	(87375183)	+	(GCG)n	Simple_repeat	1	62	(0)	1127020
25	22.4	2.5	2.4	chr14	21092542	21092622	(85951096)	+	(GGCTGA)n	Simple_repeat	1	83	(0)	1129071
23	17.2	1.9	0.0	chr14	21092584	21092635	(85951083)	+	(GGCGGA)n	Simple_repeat	1	53	(0)	1129072
5272	9.1	2.5	5.0	chr14	22636439	22637530	(84406188)	+	SVA_D	Retroposon/SVA	57	866	(520)	1131442
5286	8.5	2.8	1.8	chr14	23107699	23108500	(83935218)	C	SVA_A	Retroposon/SVA	(5)	1382	572	1132297
2097	13.7	0.7	0.0	chr14	23108607	23108899	(83934819)	C	AluJb	SINE/Alu	(16)	296	2	1132298
8619	3.2	0.5	24.2	chr14	23231648	23233421	(83810297)	+	SVA_C	Retroposon/SVA	32	1382	(2)	1132514
33	0.0	2.9	0.0	chr14	23301251	23301285	(83742433)	+	(CCCCCACG)n	Simple_repeat	1	36	(0)	1132658
13	23.2	7.5	1.4	chr14	23301599	23301665	(83742053)	+	(GGAAGGC)n	Simple_repeat	1	72	(0)	1132659
294	26.4	7.8	3.6	chr14	23469077	23469186	(83574532)	C	MIR3	SINE/MIR	(49)	159	45	1132899
9640	5.6	0.9	12.7	chr14	23897693	23899262	(83144456)	C	SVA_B	Retroposon/SVA	(0)	1383	1	1133500
7298	5.4	2.7	0.0	chr14	23944073	23944945	(83098773)	C	MER11D	LTR/ERVK	(0)	897	1	1133578
205	21.9	1.5	9.9	chr14	31208260	31208330	(75835388)	C	MIRb	SINE/MIR	(82)	186	122	1143147
7206	5.4	0.2	14.2	chr14	32127172	32128387	(74915331)	C	SVA_B	Retroposon/SVA	(0)	1383	339	1144700
245	25.4	0.0	0.0	chr14	32128444	32128498	(74915220)	+	MIR3	SINE/MIR	79	133	(75)	1144701
198	32.6	3.2	3.2	chr14	32230942	32231036	(74812682)	+	MIR3	SINE/MIR	83	177	(31)	1144872
7177	5.7	0.9	5.5	chr14	34078690	34079802	(72963916)	+	SVA_D	Retroposon/SVA	391	1384	(2)	1147211
10187	5.1	0.8	8.3	chr14	34475438	34476927	(72566791)	+	SVA_B	Retroposon/SVA	5	1382	(1)	1147867
334	27.2	7.1	10.1	chr14	34539085	34539301	(72504417)	C	MIRc	SINE/MIR	(6)	262	53	1148041
16	19.5	0.0	7.3	chr14	34539791	34539845	(72503873)	+	(GGCGG)n	Simple_repeat	1	55	(0)	1148042
2466	5.9	1.3	0.3	chr14	34539860	34540162	(72503556)	C	AluSp	SINE/Alu	(7)	306	1	1148043
7136	7.3	3.7	2.9	chr14	35151933	35153416	(71890302)	C	SVA_C	Retroposon/SVA	(1)	1383	16	1149462
38	11.7	4.4	4.2	chr14	37595124	37595214	(69448504)	+	(GCG)n	Simple_repeat	1	95	(0)	1153167
9812	4.4	3.7	8.8	chr14	44600789	44602246	(62441472)	+	SVA_C	Retroposon/SVA	2	1382	(2)	1161947
7262	6.7	0.1	29.8	chr14	45634483	45636455	(61407263)	+	SVA_A	Retroposon/SVA	1	1387	(0)	1163374
22	14.7	2.2	0.0	chr14	50312611	50312655	(56731063)	+	(CGCCCC)n	Simple_repeat	1	46	(0)	1169749
187	31.9	13.8	0.0	chr14	50312897	50312965	(56730753)	C	L2b	LINE/L2	(22)	3353	3274	1169750
278	24.1	12.6	1.2	chr14	50313052	50313135	(56730583)	+	MIR3	SINE/MIR	91	185	(23)	1169751
16	29.8	1.6	0.0	chr14	51095108	51095183	(55948535)	+	(CCGCC)n	Simple_repeat	1	77	(0)	1170951
7035	7.5	2.9	2.0	chr14	55455712	55456978	(51586740)	C	SVA_D	Retroposon/SVA	(7)	1379	79	1177723
21	22.7	2.9	2.8	chr14	59870814	59870883	(47172835)	+	(CTC)n	Simple_repeat	1	72	(0)	1184293
13	24.6	3.5	3.4	chr14	59870849	59870905	(47172813)	+	(GCT)n	Simple_repeat	1	59	(0)	1184294
18	12.1	6.6	6.2	chr14	60249684	60249744	(46793974)	+	(GCG)n	Simple_repeat	1	65	(0)	1184790
17	25.0	3.2	1.5	chr14	60249844	60249934	(46793784)	+	(GGCGGT)n	Simple_repeat	1	92	(0)	1184791
15	24.5	5.8	1.4	chr14	60515657	60515725	(46527993)	+	(GGCCTG)n	Simple_repeat	1	73	(0)	1185116
8365	2.5	0.0	32.0	chr14	63164801	63166838	(43876880)	+	SVA_D	Retroposon/SVA	1	1386	(0)	1188823
5854	8.6	2.4	2.5	chr14	63521973	63523727	(43519991)	+	SVA_D	Retroposon/SVA	58	1386	(0)	1189389
13	24.5	4.2	0.0	chr14	63727615	63727662	(43316056)	+	(GCGGC)n	Simple_repeat	1	50	(0)	1189891
23	25.5	4.3	2.1	chr14	63728076	63728168	(43315550)	+	(GCCGC)n	Simple_repeat	1	97	(0)	1189892
6144	7.2	2.8	4.7	chr14	63750841	63752103	(43291615)	C	SVA_C	Retroposon/SVA	(422)	965	1	1189957
1132	24.9	5.9	3.8	chr14	63836565	63836877	(43206841)	+	L2	LINE/L2	2568	2887	(532)	1190180
9083	6.2	1.2	13.6	chr14	64182409	64183967	(42859751)	C	SVA_A	Retroposon/SVA	(20)	1367	5	1190814
19	10.4	5.1	6.5	chr14	64504805	64504863	(42538855)	+	(CCGCGCG)n	Simple_repeat	1	62	(0)	1191410
4774	9.0	5.2	65.8	chr14	65716446	65717817	(41325901)	C	SVA_A	Retroposon/SVA	(215)	1172	428	1193598
16878	14.2	2.6	1.3	chr14	65717818	65721239	(41322479)	C	L1M1	LINE/L1	(3755)	3810	9	1193596
7016	3.3	0.7	38.6	chr14	66544582	66546823	(40496895)	C	SVA_D	Retroposon/SVA	(0)	1386	1	1194756
17	14.6	4.1	3.9	chr14	68978887	68978899	(38064819)	+	G-rich	Low_complexity	1	55	(0)	1198594
23	0.0	2.4	7.0	chr14	68978900	68978941	(38064777)	+	(GGGGCTG)n	Simple_repeat	1	43	(0)	1198595
14	24.0	0.0	0.0	chr14	68978968	68979006	(38064712)	+	(TCCCGG)n	Simple_repeat	1	39	(0)	1198596
10726	3.4	4.4	0.6	chr14	69902599	69903919	(37139799)	+	SVA_C	Retroposon/SVA	11	1384	(0)	1200375
10817	3.5	0.4	14.1	chr14	70476940	70478540	(36565178)	+	SVA_C	Retroposon/SVA	3	1384	(0)	1201257
9345	5.9	3.6	8.8	chr14	71376565	71378025	(35665693)	C	SVA_B	Retroposon/SVA	(0)	1383	1	1202718
1062	17.1	2.5	3.2	chr14	72236638	72236941	(34806777)	C	SVA_E	Retroposon/SVA	(573)	802	416	1204000
1332	21.5	1.4	10.1	chr14	72236951	72237358	(34806360)	C	L1ME2z	LINE/L1	(422)	6022	5651	1203999
3592	11.9	7.1	3.7	chr14	73562186	73563261	(33480457)	+	MER11A	LTR/ERVK	1	1232	(4)	1206565
498	32.5	8.0	8.2	chr14	73800826	73801424	(33242294)	+	L2b	LINE/L2	2620	3208	(167)	1207088
911	23.6	2.9	6.8	chr14	73801439	73801477	(33242241)	+	MIR	SINE/MIR	23	55	(207)	1207089
2027	14.6	1.4	0.3	chr14	73801478	73801772	(33241946)	C	AluJr	SINE/Alu	(14)	298	1	1207090
911	23.6	2.9	6.8	chr14	73801773	73801982	(33241736)	+	MIR	SINE/MIR	56	262	(0)	1207089
44	0.0	0.0	0.0	chr14	75177268	75177307	(31866411)	+	(TAT)n	Simple_repeat	1	40	(0)	1209874
10085	5.2	0.4	10.3	chr14	77746891	77748425	(29295293)	+	SVA_B	Retroposon/SVA	1	1382	(1)	1214857
10546	4.1	6.5	1.6	chr14	81461891	81463203	(25580515)	C	SVA_B	Retroposon/SVA	(0)	1383	2	1220684
6752	7.9	16.7	0.8	chr14	81537919	81538981	(25504737)	C	MER11A	LTR/ERVK	(0)	1266	1	1220781
2083	13.8	0.0	0.3	chr14	82533751	82534046	(24509672)	+	AluSx	SINE/Alu	1	295	(17)	1222238
660	28.6	1.5	0.5	chr14	88977591	88977783	(18065935)	C	MIR	SINE/MIR	(47)	215	21	1231305
351	22.9	1.9	6.2	chr14	88977785	88977896	(18065822)	+	MamRep564	Unknown	143	249	(108)	1231306
366	32.0	12.0	1.7	chr14	88978045	88978216	(18065502)	+	MER91A	DNA/hAT-Tip100	5	196	(0)	1231307
4791	8.1	1.9	2.0	chr14	90953101	90954214	(16089504)	+	MER11A	LTR/ERVK	1	1263	(3)	1234738
12	13.1	2.7	5.3	chr14	91836330	91836366	(15207352)	+	(CGCCGG)n	Simple_repeat	1	38	(0)	1236377
14	21.4	5.7	4.0	chr14	91836469	91836538	(15207180)	+	(CCTAC)n	Simple_repeat	1	74	(0)	1236378
49	23.4	0.0	0.0	chr14	91836571	91836685	(15207033)	+	G-rich	Low_complexity	1	115	(0)	1236379
11	7.5	6.7	3.1	chr14	91836696	91836725	(15206993)	+	(CCTGCG)n	Simple_repeat	1	32	(0)	1236380
6744	7.0	5.0	0.7	chr14	92187047	92187956	(14855762)	C	SVA_A	Retroposon/SVA	(0)	1387	436	1237060
711	16.5	0.0	0.9	chr14	92187962	92188077	(14855641)	C	AluJb	SINE/Alu	(196)	116	2	1237059
7253	4.9	2.6	2.8	chr14	93809245	93810143	(13233575)	C	MER11D	LTR/ERVK	(0)	897	1	1240048
15	26.6	3.7	0.0	chr14	96502534	96502587	(10541131)	+	(GGC)n	Simple_repeat	1	56	(0)	1245031
209	25.0	4.5	5.6	chr14	96796975	96797063	(10246655)	C	MIRb	SINE/MIR	(0)	268	175	1245550
273	29.4	8.9	5.0	chr14	99912721	99912881	(7130837)	+	Tigger19b	DNA/TcMar-Tigger	382	549	(1)	1250818
38	41.3	1.0	0.0	chr14	101235012	101235218	(5808500)	+	(GT)n	Simple_repeat	1	209	(0)	1252906
6741	6.6	1.8	6.3	chr14	102171911	102173096	(4870622)	C	SVA_D	Retroposon/SVA	(0)	1386	421	1254404
27	0.0	0.0	3.3	chr14	102173100	102173129	(4870589)	+	(TTTTTA)n	Simple_repeat	1	30	(0)	1254405
1928	14.1	0.0	0.7	chr14	102173138	102173413	(4870305)	C	AluSx3	SINE/Alu	(37)	274	1	1254406
335	27.3	5.0	5.7	chr14	102319292	102319431	(4724287)	+	MER5A	DNA/hAT-Charlie	46	184	(5)	1254666
22	22.7	0.0	1.7	chr14	102319768	102319825	(4723893)	+	(GGC)n	Simple_repeat	1	58	(0)	1254667
16	18.9	2.3	2.2	chr14	103385444	103385487	(3658231)	+	(GCG)n	Simple_repeat	1	45	(0)	1256712
14	20.8	0.0	0.0	chr14	103385584	103385616	(3658102)	+	(CTC)n	Simple_repeat	1	33	(0)	1256713
2585	11.8	4.3	4.8	chr14	103402658	103403120	(3640598)	C	MER65C	LTR/ERV1	(0)	461	1	1256753
15	34.6	0.0	1.4	chr14	103629120	103629193	(3414525)	+	G-rich	Low_complexity	1	74	(0)	1257196
346	25.5	2.2	0.8	chr14	105186236	105187208	(1856510)	+	(TG)n	Simple_repeat	1	994	(0)	1259368
1808	14.4	2.0	3.9	chr14	105187461	105187766	(1855952)	C	AluJr	SINE/Alu	(0)	312	13	1259369
2251	6.7	4.8	1.1	chr15	20340242	20344102	(81647087)	+	(AGCCAGCCA)n	Simple_repeat	1	4048	(0)	1263201
2546	6.8	0.0	0.0	chr15	22785786	22786095	(79205094)	C	AluY	SINE/Alu	(0)	311	2	1266287
285	27.3	0.3	1.1	chr15	28099778	28100560	(73890629)	+	(CA)n	Simple_repeat	1	785	(0)	1273402
6375	7.5	1.9	4.6	chr15	28848960	28850697	(73140492)	C	SVA_D	Retroposon/SVA	(20)	1366	1	1274615
2639	12.7	4.5	66.6	chr15	35081482	35082050	(66909139)	+	SVA_A	Retroposon/SVA	399	872	(515)	1283929
1829	14.8	7.1	1.0	chr15	35082051	35082460	(66908729)	+	SVA_F	Retroposon/SVA	421	857	(518)	1283929
4090	11.0	4.9	2.7	chr15	35082501	35083199	(66907990)	+	SVA_A	Retroposon/SVA	436	1150	(237)	1283929
9696	2.7	0.6	18.6	chr15	41320257	41321917	(60669272)	+	SVA_D	Retroposon/SVA	5	1363	(23)	1293053
2789	10.8	2.8	8.7	chr15	41381962	41383001	(60608188)	+	SVA_F	Retroposon/SVA	382	857	(518)	1293215
291	29.4	10.5	0.8	chr15	42273827	42273946	(59717243)	+	L3	LINE/CR1	3950	4082	(17)	1294836
8177	3.4	0.4	23.6	chr15	43013854	43015653	(58975536)	+	SVA_D	Retroposon/SVA	1	1380	(6)	1296195
10344	2.8	1.4	15.6	chr15	43166555	43168172	(58823017)	C	SVA_D	Retroposon/SVA	(0)	1386	2	1296510
16	15.5	2.8	0.0	chr15	50765403	50765438	(51225751)	+	(GCCCCG)n	Simple_repeat	1	37	(0)	1308471
13	20.2	4.3	2.0	chr15	50765626	50765672	(51225517)	+	(CCGGA)n	Simple_repeat	1	49	(0)	1308472
31	12.5	1.5	3.0	chr15	52528901	52528965	(49462224)	+	(GGCGG)n	Simple_repeat	1	66	(0)	1311446
32	22.2	0.0	0.0	chr15	52529060	52529132	(49462057)	+	(CGC)n	Simple_repeat	1	73	(0)	1311447
6662	9.6	4.3	70.2	chr15	55445041	55447779	(46543410)	C	SVA_A	Retroposon/SVA	(0)	1387	51	1315569
30	15.3	1.7	0.0	chr15	55993613	55993670	(45997519)	+	GA-rich	Low_complexity	1	59	(0)	1316534
7249	9.5	9.7	3.2	chr15	56540199	56541420	(45449769)	+	SVA_D	Retroposon/SVA	58	1366	(20)	1317245
10833	3.2	0.4	6.6	chr15	60946234	60947708	(41043481)	+	SVA_C	Retroposon/SVA	3	1384	(0)	1324570
10684	2.7	0.4	11.0	chr15	63098256	63099787	(38891402)	+	SVA_D	Retroposon/SVA	10	1378	(8)	1327948
1515	25.6	7.6	1.3	chr15	63710450	63711035	(38280154)	C	L2a	LINE/L2	(0)	3426	2803	1328993
1764	14.8	6.6	0.0	chr15	63711053	63711322	(38279867)	+	AluJr	SINE/Alu	2	290	(22)	1328994
352	25.3	6.1	7.1	chr15	65297652	65297834	(36693355)	+	Charlie2b	DNA/hAT-Charlie	2600	2780	(2)	1332329
1811	12.8	0.7	1.4	chr15	65298160	65298432	(36692757)	+	AluSz	SINE/Alu	12	283	(29)	1332330
44	0.0	0.0	0.0	chr15	65422520	65422557	(36568632)	+	(AC)n	Simple_repeat	1	38	(0)	1332585
23	12.0	4.4	0.0	chr15	65422877	65422921	(36568268)	+	(GCC)n	Simple_repeat	1	47	(0)	1332586
638	4.0	0.0	0.0	chr15	65869059	65869133	(36122056)	C	tRNA-Gln-CAG	tRNA	(0)	75	1	1333537
7719	4.5	0.5	28.9	chr15	68221211	68223141	(33768048)	+	SVA_A	Retroposon/SVA	8	1386	(1)	1337944
1039	15.3	5.9	0.0	chr15	68387372	68387547	(33603642)	+	MER5A	DNA/hAT-Charlie	3	189	(0)	1338254
1222	22.2	11.3	0.6	chr15	68559886	68560225	(33430964)	C	ERV3-16A3_LTR	LTR/ERVL	(0)	422	42	1338559
22	6.4	9.8	1.8	chr15	68560231	68560281	(33430908)	+	(TTTC)n	Simple_repeat	1	56	(0)	1338560
11	11.2	6.9	0.0	chr15	70099568	70099596	(31891593)	+	(TCCCCC)n	Simple_repeat	1	31	(0)	1341465
32	0.0	7.5	0.0	chr15	70854226	70854265	(31136924)	+	(CGC)n	Simple_repeat	1	43	(0)	1342867
801	20.6	5.4	0.0	chr15	70854684	70854858	(31136331)	+	MER5A	DNA/hAT-Charlie	1	185	(4)	1342868
10576	4.2	0.3	7.9	chr15	70870953	70872450	(31118739)	C	SVA_B	Retroposon/SVA	(0)	1383	1	1342906
9161	2.2	1.4	25.8	chr15	72395802	72397643	(29593546)	+	SVA_D	Retroposon/SVA	1	1386	(0)	1345397
382	21.9	15.0	0.0	chr15	72473556	72473674	(29517515)	+	MIRb	SINE/MIR	87	226	(42)	1345545
4269	8.6	7.9	6.3	chr15	72708300	72709326	(29281863)	+	MER11A	LTR/ERVK	1	1266	(0)	1345974
6982	4.0	0.8	10.3	chr15	72806345	72808120	(29183069)	C	SVA_D	Retroposon/SVA	(19)	1367	1	1346133
1286	34.8	8.6	1.5	chr15	73636792	73637507	(28353682)	+	L2b	LINE/L2	607	1377	(2042)	1347436
315	31.2	3.0	1.5	chr15	73994361	73994490	(27996699)	+	L2c	LINE/L2	3256	3387	(0)	1348060
256	33.9	6.1	3.1	chr15	74382295	74382422	(27608767)	C	MIR3	SINE/MIR	(17)	191	60	1348746
234	16.3	2.3	0.0	chr15	74598401	74598443	(27392746)	C	MLT1K	LTR/ERVL-MaLR	(417)	178	135	1349162
14	18.9	2.2	4.3	chr15	74598758	74598803	(27392386)	+	(GGAGCT)n	Simple_repeat	1	47	(0)	1349163
3343	10.1	3.0	4.9	chr15	75502934	75503715	(26487474)	+	SVA_D	Retroposon/SVA	70	870	(517)	1350936
10399	3.7	7.3	0.5	chr15	75558502	75559788	(26431401)	+	SVA_C	Retroposon/SVA	4	1384	(0)	1351078
12	18.9	7.1	0.0	chr15	75738638	75738679	(26252510)	+	(GCCCCA)n	Simple_repeat	1	45	(0)	1351436
216	30.3	1.3	0.0	chr15	75842893	75842968	(26148221)	C	L2a	LINE/L2	(676)	2743	2667	1351618
1175	13.4	20.8	1.3	chr15	76147751	76147989	(25843200)	+	AluJr	SINE/Alu	3	300	(12)	1352095
12953	3.1	0.3	0.2	chr15	76639181	76640716	(25350473)	+	HERVK11D-int	LTR/ERVK	6216	7752	(0)	1352854
7362	3.8	2.7	0.0	chr15	76640717	76641589	(25349600)	+	MER11D	LTR/ERVK	1	897	(0)	1352854
533	23.7	5.3	17.1	chr15	77083509	77083731	(24907458)	+	L1MC5a	LINE/L1	675	903	(1874)	1353517
14	17.3	5.1	0.0	chr15	79311269	79311280	(22679909)	+	(GCTCCT)n	Simple_repeat	1	38	(0)	1357652
15	8.9	0.0	0.0	chr15	79311281	79311304	(22679885)	+	(TGC)n	Simple_repeat	1	24	(0)	1357653
8128	5.9	1.1	6.9	chr15	80647195	80648380	(21342809)	+	SVA_D	Retroposon/SVA	270	1385	(1)	1359847
35	0.0	0.0	0.0	chr15	81133895	81133926	(20857263)	+	(TGC)n	Simple_repeat	1	32	(0)	1360763
12	14.1	0.0	8.1	chr15	82647385	82647421	(19343768)	+	(CCCG)n	Simple_repeat	1	37	(0)	1363212
412	21.8	11.4	1.0	chr15	82953017	82953118	(19038071)	C	MIR3	SINE/MIR	(21)	187	74	1363738
18	0.0	11.8	0.0	chr15	83207878	83207911	(18783278)	+	(CCCGCTT)n	Simple_repeat	1	38	(0)	1364241
13	21.8	1.9	5.6	chr15	83207912	83207919	(18783270)	+	(CCCCG)n	Simple_repeat	29	54	(0)	1364240
258	25.6	4.6	10.1	chr15	83208334	83208482	(18782707)	+	MIR3	SINE/MIR	6	150	(118)	1364242
36	8.6	1.6	1.5	chr15	84143269	84143332	(17847857)	+	(GGCA)n	Simple_repeat	1	65	(0)	1365650
6204	11.4	15.9	3.9	chr15	85164295	85165402	(16825787)	+	MER11A	LTR/ERVK	1	1266	(0)	1367343
9852	5.1	1.2	12.3	chr15	88523410	88524964	(13466225)	+	SVA_B	Retroposon/SVA	3	1382	(1)	1372546
1068	15.6	1.6	2.6	chr15	89200251	89200502	(12790687)	C	SVA_F	Retroposon/SVA	(710)	665	420	1373813
5698	9.6	3.4	7.1	chr15	89866994	89868511	(12122678)	+	SVA_F	Retroposon/SVA	1	862	(520)	1375038
188	31.9	1.7	12.1	chr15	90400751	90400882	(11590307)	C	Tigger19b	DNA/TcMar-Tigger	(164)	386	269	1376293
523	31.8	4.0	7.7	chr15	90870700	90870958	(11120231)	+	MIRb	SINE/MIR	3	251	(17)	1377285
12	21.1	6.2	5.9	chr15	90871296	90871375	(11119814)	+	G-rich	Low_complexity	1	85	(0)	1377286
13	23.3	0.0	2.4	chr15	92655438	92655479	(9335710)	+	(GCCGCT)n	Simple_repeat	1	42	(0)	1380169
13	23.2	0.0	2.4	chr15	92714586	92714627	(9276562)	+	(CCCCTC)n	Simple_repeat	1	42	(0)	1380277
9272	1.8	0.0	27.4	chr15	92767465	92769371	(9221818)	C	SVA_D	Retroposon/SVA	(0)	1386	2	1380388
349	27.2	1.7	0.1	chr15	92840091	92840197	(9150992)	+	MIR	SINE/MIR	99	215	(53)	1380586
357	37.4	3.2	0.6	chr15	97354052	97354234	(4636955)	C	MER91A	DNA/hAT-Tip100	(0)	196	9	1387093
577	17.3	3.8	3.0	chr15	98428871	98429001	(3562188)	C	MER20	DNA/hAT-Charlie	(82)	137	6	1388630
1976	19.7	5.5	4.0	chr15	98429013	98429436	(3561753)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	71	1388631
15	15.3	0.0	5.0	chr15	101723942	101723981	(267208)	+	(GCAGG)n	Simple_repeat	1	40	(0)	1393180
17	3.6	0.0	6.2	chr15	101724553	101724584	(266605)	+	(GGGGC)n	Simple_repeat	1	32	(0)	1393181
26	0.0	0.0	0.0	chr15	101724604	101724628	(266561)	+	(GGGGC)n	Simple_repeat	1	25	(0)	1393181
603	32.5	17.5	1.9	chr16	52803	53424	(90284921)	C	L2a	LINE/L2	(135)	3291	2528	1394121
35	23.7	3.6	3.5	chr16	1763788	1763924	(88574421)	+	G-rich	Low_complexity	1	142	(0)	1396368
207	27.4	14.8	0.9	chr16	1959161	1959271	(88379074)	+	L2a	LINE/L2	3226	3405	(21)	1396715
242	27.9	17.2	0.9	chr16	1959282	1959393	(88378952)	+	L2a	LINE/L2	3267	3400	(26)	1396716
17	17.0	2.5	0.0	chr16	1965349	1965388	(88372957)	+	(CTGACCC)n	Simple_repeat	1	41	(0)	1396722
12	15.9	6.5	4.1	chr16	1979375	1979420	(88358925)	+	(GCCCC)n	Simple_repeat	1	49	(0)	1396741
1684	10.8	10.3	2.5	chr16	3174652	3174937	(87163408)	C	AluJo	SINE/Alu	(0)	312	2	1398658
353	26.7	9.0	0.8	chr16	3364686	3364817	(86973528)	+	MIR	SINE/MIR	97	240	(22)	1399059
275	30.7	11.9	0.0	chr16	4152479	4152618	(86185727)	+	MamRep605	LTR?	460	618	(231)	1400554
597	1.3	0.0	0.0	chr16	4152816	4152893	(86185452)	+	L1PA3	LINE/L1	6078	6155	(0)	1400555
1871	9.3	5.7	0.0	chr16	4152922	4153200	(86185145)	+	AluSg	SINE/Alu	1	296	(14)	1400556
14	10.9	5.0	9.5	chr16	8963818	8963877	(81374468)	+	(TCGGCG)n	Simple_repeat	1	63	(0)	1410168
32	16.0	7.9	1.8	chr16	8963924	8964025	(81374320)	+	(CGCGGAG)n	Simple_repeat	1	108	(0)	1410169
6345	10.3	5.2	1.9	chr16	9349586	9350765	(80987580)	C	SVA_A	Retroposon/SVA	(3)	1384	395	1411167
10767	16.5	2.8	2.1	chr16	9350770	9352622	(80985723)	C	L1MA3	LINE/L1	(5677)	1888	22	1411166
1845	13.5	6.4	0.7	chr16	10737394	10737675	(79600670)	C	AluSx	SINE/Alu	(13)	299	1	1414106
8688	6.1	16.2	0.1	chr16	13889052	13890211	(76448134)	+	SVA_B	Retroposon/SVA	1	1383	(0)	1421092
1750	11.9	6.6	0.4	chr16	15887826	15888093	(74450252)	+	AluJr	SINE/Alu	15	300	(12)	1425477
258	29.1	4.8	0.0	chr16	15888109	15888187	(74450158)	+	MIRb	SINE/MIR	163	245	(23)	1425478
50	0.0	3.0	4.4	chr16	16069149	16069214	(74269131)	+	(AAAT)n	Simple_repeat	1	68	(0)	1426012
1555	19.1	0.3	1.1	chr16	16069215	16069373	(74268972)	+	AluJb	SINE/Alu	125	281	(31)	1426011
17	12.7	0.0	0.0	chr16	16069374	16069399	(74268946)	+	(T)n	Simple_repeat	1	26	(0)	1426013
10136	5.5	0.5	7.9	chr16	16618409	16619887	(73718458)	C	SVA_B	Retroposon/SVA	(14)	1369	1	1427282
10632	4.9	0.4	10.5	chr16	18733729	18735267	(71603078)	+	SVA_B	Retroposon/SVA	1	1383	(0)	1431818
4708	8.4	2.2	1.8	chr16	19543135	19544242	(70794103)	+	MER11A	LTR/ERVK	1	1266	(0)	1433805
278	15.2	11.9	0.0	chr16	19718619	19718677	(70619668)	C	MIRc	SINE/MIR	(118)	150	84	1434175
198	22.1	8.1	4.2	chr16	20807199	20807269	(69531076)	+	MIRc	SINE/MIR	112	185	(83)	1436514
10808	4.2	0.8	8.0	chr16	23582784	23584274	(66754071)	+	SVA_C	Retroposon/SVA	2	1384	(0)	1442617
7099	3.5	0.5	40.8	chr16	24573491	24575810	(65762535)	C	SVA_C	Retroposon/SVA	(2)	1382	3	1445007
218	28.0	12.7	0.0	chr16	25759958	25760081	(64578264)	C	MIRc	SINE/MIR	(85)	183	24	1447651
56	1.9	0.0	0.0	chr16	25760102	25760156	(64578189)	+	(CCCTAA)n	Simple_repeat	1	55	(0)	1447654
1878	15.6	1.1	6.7	chr16	25760191	25760423	(64577922)	C	MLT1B	LTR/ERVL-MaLR	(40)	350	123	1447655
28	0.0	3.3	0.0	chr16	28925338	28925367	(61412978)	+	(CCCCGG)n	Simple_repeat	1	31	(0)	1454764
2399	8.0	0.3	0.0	chr16	28945121	28945420	(61392925)	+	AluSc	SINE/Alu	1	301	(8)	1454817
619	12.3	0.0	12.3	chr16	28945421	28945522	(61392823)	C	FLAM_A	SINE/Alu	(26)	116	19	1454816
348	28.7	0.0	3.6	chr16	28945423	28945534	(61392811)	+	SVA_A	Retroposon/SVA	219	326	(1061)	1454818
13	21.1	2.6	0.0	chr16	30010872	30010909	(60327436)	+	(GCCCCT)n	Simple_repeat	1	39	(0)	1457056
18	37.2	0.0	0.0	chr16	30011140	30011212	(60327133)	+	(GC)n	Simple_repeat	1	73	(0)	1457057
15	27.5	0.0	0.0	chr16	30011439	30011488	(60326857)	+	(CCCCCG)n	Simple_repeat	1	50	(0)	1457058
24	20.8	0.0	1.8	chr16	30335132	30335188	(60003157)	+	GA-rich	Low_complexity	1	57	(0)	1457788
16	19.9	0.0	0.0	chr16	30335313	30335347	(60002998)	+	GA-rich	Low_complexity	1	35	(0)	1457789
2248	12.5	0.0	0.3	chr16	30610863	30611175	(59727170)	C	AluSz	SINE/Alu	(0)	312	1	1458466
26	26.6	3.4	5.2	chr16	30786812	30786959	(59551386)	+	(CCCCCGG)n	Simple_repeat	1	153	(0)	1458841
198	5.9	1.8	2.1	chr16	31013245	31013526	(59324819)	+	(TTC)n	Simple_repeat	1	287	(0)	1459390
700	17.9	3.3	0.0	chr16	31013527	31013643	(59324702)	C	FLAM_A	SINE/Alu	(21)	121	1	1459391
1278	14.2	133.7	2.2	chr16	31169269	31169625	(59168720)	C	SVA_A	Retroposon/SVA	(517)	870	555	1459765
6557	4.8	2.9	1.1	chr16	31169361	31170233	(59168112)	+	SVA_D	Retroposon/SVA	432	1320	(66)	1459766
2337	6.0	0.0	0.0	chr16	31442302	31442618	(58895727)	C	AluSx4	SINE/Alu	(0)	310	1	1460321
22	15.8	4.3	4.2	chr16	31472119	31472187	(58866158)	+	(CCCCGCG)n	Simple_repeat	1	72	(0)	1460389
2357	5.0	5.4	2.5	chr16	33335927	33340033	(56998312)	+	(TGGCTTGGC)n	Simple_repeat	1	4327	(0)	1462585
888	6.7	4.2	0.7	chr16	33340034	33340155	(56998190)	C	LTR13A	LTR/ERVK	(840)	126	1	1462584
330	24.4	1.2	2.4	chr16	34071698	34071779	(56266566)	+	AluJb	SINE/Alu	208	288	(24)	1463578
6240	7.9	2.2	3.0	chr16	47000001	47001303	(43337042)	+	SVA_D	Retroposon/SVA	421	1384	(2)	1466507
6074	6.8	0.9	13.7	chr16	48058550	48059670	(42278675)	C	SVA_A	Retroposon/SVA	(13)	1374	398	1468045
10740	5.0	1.7	1.2	chr16	48416183	48417559	(41920786)	C	SVA_B	Retroposon/SVA	(0)	1383	1	1468729
10228	5.8	0.5	6.3	chr16	48482437	48483903	(41854442)	C	SVA_B	Retroposon/SVA	(0)	1383	2	1468885
16	8.3	0.0	0.0	chr16	50368302	50368327	(39970018)	+	(AAGAA)n	Simple_repeat	1	26	(0)	1472322
9309	7.4	1.3	3.5	chr16	53624781	53626158	(36712187)	+	SVA_A	Retroposon/SVA	40	1387	(0)	1478159
8061	2.5	0.0	33.5	chr16	53697323	53699406	(36638939)	+	SVA_D	Retroposon/SVA	1	1386	(0)	1478264
4816	11.0	3.8	49.1	chr16	55988419	55990152	(34348193)	+	SVA_A	Retroposon/SVA	1	1171	(216)	1482347
6538	9.3	2.2	8.3	chr16	58395338	58397852	(31940493)	C	SVA_D	Retroposon/SVA	(9)	1377	1	1487007
10131	3.5	2.0	13.5	chr16	58845518	58847087	(31491258)	C	SVA_D	Retroposon/SVA	(0)	1386	1	1487955
1626	18.1	5.5	3.2	chr16	60357782	60358399	(29979946)	C	SVA_F	Retroposon/SVA	(518)	857	421	1490221
659	8.4	1.2	0.0	chr16	60358400	60358482	(29979863)	C	AluSc	SINE/Alu	(225)	84	1	1490222
36	22.9	3.0	3.7	chr16	66427300	66427430	(23910915)	+	(GCCGGA)n	Simple_repeat	1	135	(0)	1499718
6871	7.3	3.3	3.2	chr16	66630306	66631930	(23706415)	+	SVA_D	Retroposon/SVA	1	1370	(17)	1500076
25	26.8	2.2	5.8	chr16	66696773	66696906	(23641439)	+	(GGCGG)n	Simple_repeat	1	137	(0)	1500229
860	12.2	7.8	7.4	chr16	66830274	66830476	(23507869)	+	MER33	DNA/hAT-Charlie	121	324	(0)	1500502
13	15.2	0.0	3.2	chr16	66830711	66830741	(23507604)	+	(CCCGG)n	Simple_repeat	1	31	(0)	1500503
12	22.1	2.7	0.0	chr16	67178507	67178543	(23159802)	+	G-rich	Low_complexity	1	38	(0)	1501222
18	15.5	4.7	0.0	chr16	67178736	67178778	(23159567)	+	(CCCA)n	Simple_repeat	1	45	(0)	1501223
2265	7.3	0.3	6.4	chr16	67816948	67817142	(22521203)	C	AluSc8	SINE/Alu	(1)	310	134	1502421
2474	4.3	0.0	3.0	chr16	67817143	67817445	(22520900)	C	AluYc	SINE/Alu	(5)	294	1	1502422
6509	5.7	2.7	5.8	chr16	68162750	68164430	(22173915)	C	SVA_D	Retroposon/SVA	(6)	1380	7	1503059
1058	29.4	9.3	1.4	chr16	68553068	68553611	(21784734)	C	L2a	LINE/L2	(15)	3411	2816	1503758
1990	15.7	0.0	1.9	chr16	68553612	68553923	(21784422)	C	AluJr4	SINE/Alu	(5)	307	2	1503759
5317	7.0	2.1	35.6	chr16	70203901	70204997	(20133348)	+	SVA_F	Retroposon/SVA	57	857	(518)	1507457
835	13.8	0.0	0.0	chr16	72093009	72093124	(18245221)	C	FLAM_A	SINE/Alu	(16)	126	11	1510969
12	26.5	5.0	1.6	chr16	74985009	74985068	(15353277)	+	(CGC)n	Simple_repeat	1	63	(0)	1515869
13	14.0	7.3	2.3	chr16	75256783	75256823	(15081522)	+	(CCTCT)n	Simple_repeat	1	44	(0)	1516393
632	27.3	4.8	2.3	chr16	75792975	75793195	(14545150)	+	L2a	LINE/L2	3190	3416	(10)	1517472
2115	12.4	1.6	0.7	chr16	85298420	85298726	(5039619)	C	AluSz	SINE/Alu	(2)	310	1	1534584
8866	4.5	11.2	8.6	chr16	87718342	87719682	(2618663)	+	SVA_B	Retroposon/SVA	3	1382	(1)	1538936
1962	11.4	4.8	0.0	chr16	87866940	87867219	(2471126)	C	AluSx	SINE/Alu	(18)	294	1	1539199
13	28.1	0.0	0.0	chr16	88455515	88455557	(1882788)	+	(CGCC)n	Simple_repeat	1	43	(0)	1539982
256	24.8	9.8	3.3	chr16	88768839	88768993	(1569352)	+	MIRc	SINE/MIR	15	180	(88)	1540407
9615	3.0	1.0	16.9	chr16	89462044	89463693	(874652)	+	SVA_D	Retroposon/SVA	1	1386	(0)	1541298
2319	8.4	0.3	0.3	chr16	89699552	89699849	(638496)	C	AluSg	SINE/Alu	(12)	298	1	1541694
359	34.0	12.8	1.9	chr16	89699978	89700193	(638152)	C	MIRb	SINE/MIR	(13)	255	13	1541695
2275	11.6	0.0	0.0	chr16	89835893	89836194	(502151)	+	AluSx1	SINE/Alu	1	302	(10)	1541944
277	23.1	3.0	0.0	chr16	89836299	89836363	(501982)	C	MLT1D	LTR/ERVL-MaLR	(438)	67	1	1541945
695	23.3	2.2	1.1	chr16	89836448	89836629	(501716)	C	L1ME2z	LINE/L1	(151)	6293	6110	1541946
6523	6.2	1.9	5.1	chr17	597950	599774	(82657667)	+	SVA_D	Retroposon/SVA	7	1386	(0)	1545429
15	14.9	2.6	2.5	chr17	1229521	1229559	(82027882)	+	(CGCTCC)n	Simple_repeat	1	40	(0)	1546622
2375	6.6	0.0	2.6	chr17	1388235	1388536	(81868905)	+	AluY	SINE/Alu	1	294	(17)	1547005
1768	10.4	1.3	14.3	chr17	1388537	1388574	(81868867)	C	AluSx	SINE/Alu	(275)	37	1	1547004
745	16.2	0.8	0.0	chr17	1388577	1388693	(81868748)	C	FLAM_C	SINE/Alu	(8)	135	18	1547006
6090	5.4	0.9	34.8	chr17	1688598	1690667	(81566774)	C	SVA_F	Retroposon/SVA	(23)	1361	1	1547597
19	21.7	1.4	5.6	chr17	2398959	2399029	(80858412)	+	(GCCCCC)n	Simple_repeat	1	72	(0)	1549020
15	29.9	4.1	0.0	chr17	2399596	2399668	(80857773)	+	(GGCCCG)n	Simple_repeat	1	76	(0)	1549021
9436	3.3	0.0	26.7	chr17	2506252	2508143	(80749298)	+	SVA_D	Retroposon/SVA	1	1386	(0)	1549270
8527	2.9	2.2	24.7	chr17	3111855	3113644	(80143797)	C	SVA_D	Retroposon/SVA	(6)	1380	2	1550578
6959	6.3	2.7	2.5	chr17	7168880	7169774	(76087667)	+	MER11D	LTR/ERVK	1	897	(0)	1558379
17	30.5	0.0	1.5	chr17	7261654	7261719	(75995722)	+	(CCCCG)n	Simple_repeat	1	66	(0)	1558513
14	12.8	0.0	7.5	chr17	7394560	7394599	(75862842)	+	(CCCCGC)n	Simple_repeat	1	40	(0)	1558758
31	28.2	2.5	1.6	chr17	7561967	7562077	(75695364)	+	(GGC)n	Simple_repeat	1	145	(0)	1559082
13	20.8	0.0	0.0	chr17	7562078	7562110	(75695331)	+	(GCGGC)n	Simple_repeat	1	33	(0)	1559083
502	29.9	12.0	4.0	chr17	7687850	7688124	(75569317)	+	L2a	LINE/L2	3125	3424	(2)	1559336
779	1.2	0.0	0.0	chr17	8138878	8138962	(75118479)	C	tRNA-Ser-TCG	tRNA	(0)	85	1	1560170
13	0.0	14.3	0.0	chr17	8139020	8139047	(75118394)	+	(CCGGCT)n	Simple_repeat	1	32	(0)	1560171
10727	4.0	0.4	8.3	chr17	8373141	8374641	(74882800)	+	SVA_B	Retroposon/SVA	1	1383	(0)	1560682
10779	4.6	0.2	8.7	chr17	10056758	10058268	(73199173)	+	SVA_C	Retroposon/SVA	2	1384	(0)	1563944
262	30.6	2.0	0.0	chr17	12020534	12020631	(71236810)	C	Charlie4z	DNA/hAT-Charlie	(14)	153	54	1567442
21	14.5	0.0	0.0	chr17	12020906	12020943	(71236498)	+	(GCG)n	Simple_repeat	1	38	(0)	1567443
1535	15.0	5.8	2.7	chr17	13666248	13666616	(69590825)	C	SVA_F	Retroposon/SVA	(573)	802	422	1570168
8446	8.1	1.9	5.3	chr17	16144880	16146306	(67111135)	+	SVA_B	Retroposon/SVA	1	1377	(6)	1574280
10836	3.5	0.2	8.4	chr17	16311459	16312957	(66944484)	C	SVA_C	Retroposon/SVA	(0)	1384	9	1574677
17	12.6	2.9	0.0	chr17	16492111	16492145	(66765296)	+	(GCGG)n	Simple_repeat	1	36	(0)	1575079
14	10.4	6.4	6.0	chr17	16492205	16492251	(66765190)	+	(GCCG)n	Simple_repeat	1	50	(0)	1575080
32	25.5	1.6	4.7	chr17	16492252	16492330	(66765111)	+	(CGCCC)n	Simple_repeat	2	129	(0)	1575081
10792	2.5	0.4	13.0	chr17	17911652	17913237	(65344204)	C	SVA_D	Retroposon/SVA	(0)	1386	2	1577562
10693	3.3	1.5	10.5	chr17	18337544	18339066	(64918375)	+	SVA_C	Retroposon/SVA	1	1384	(0)	1578374
4840	7.4	39.0	0.1	chr17	19684813	19685794	(63571647)	+	SVA_A	Retroposon/SVA	1	1364	(23)	1581089
9484	3.7	1.1	16.3	chr17	19950299	19951909	(63305532)	+	SVA_B	Retroposon/SVA	19	1382	(1)	1581624
5887	7.4	7.0	5.3	chr17	20557009	20558030	(62699411)	+	SVA_B	Retroposon/SVA	343	1383	(0)	1582675
9427	2.8	0.1	20.4	chr17	20684415	20686101	(62571340)	+	SVA_D	Retroposon/SVA	39	1381	(5)	1582886
453	21.4	15.9	4.4	chr17	21043779	21043983	(62213458)	C	Charlie5	DNA/hAT-Charlie	(24)	2600	2368	1583518
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
7092	6.0	2.6	0.0	chr17	27181224	27182097	(56075344)	C	MER11D	LTR/ERVK	(0)	897	1	1586265
5456	8.7	3.1	5.9	chr17	28223105	28224648	(55032793)	+	SVA_F	Retroposon/SVA	57	857	(518)	1588303
1013	15.8	4.1	0.0	chr17	28318592	28318755	(54938686)	C	AluJo	SINE/Alu	(140)	172	2	1588460
1800	16.5	1.7	2.3	chr17	28419347	28419649	(54837792)	+	AluJr	SINE/Alu	1	301	(11)	1588639
669	14.8	0.3	5.5	chr17	28419650	28419815	(54837626)	+	SVA_F	Retroposon/SVA	452	688	(687)	1588640
9947	2.8	0.3	15.3	chr17	28458151	28459780	(54797661)	+	SVA_D	Retroposon/SVA	1	1385	(1)	1588741
8993	4.0	6.2	10.4	chr17	30522805	30524227	(52733214)	+	SVA_D	Retroposon/SVA	22	1380	(6)	1592710
5973	9.3	5.6	54.7	chr17	32179166	32180647	(51076794)	+	SVA_A	Retroposon/SVA	422	1384	(3)	1596260
993	4.0	0.0	0.0	chr17	32822870	32822994	(50434447)	+	L1PA5	LINE/L1	6030	6154	(0)	1597471
6181	16.1	1.6	3.0	chr17	35341247	35341378	(47916063)	C	L1MA9	LINE/L1	(1791)	4352	4230	1602098
6658	8.1	2.7	0.0	chr17	35341379	35342251	(47915190)	+	MER11D	LTR/ERVK	1	897	(0)	1602102
6941	8.1	2.4	2.3	chr17	39336994	39338549	(43918892)	+	SVA_D	Retroposon/SVA	32	1385	(2)	1609829
2121	11.3	2.7	0.0	chr17	39890728	39891018	(43366423)	+	AluSq	SINE/Alu	1	299	(14)	1610951
2581	21.1	14.2	2.1	chr17	39891019	39891283	(43366158)	C	LTR41	LTR/ERVL	(429)	339	1	1610950
6860	6.7	3.4	0.3	chr17	41341831	41342700	(41914741)	C	MER11D	LTR/ERVK	(0)	897	1	1613493
19	9.2	6.0	3.8	chr17	42761382	42761431	(40496010)	+	G-rich	Low_complexity	1	53	(0)	1616315
1428	10.7	3.1	6.1	chr17	43159302	43159631	(40097810)	C	SVA_F	Retroposon/SVA	(573)	802	483	1617225
2041	2.1	0.0	0.0	chr17	43159627	43159859	(40097582)	+	SVA_D	Retroposon/SVA	1154	1386	(0)	1617226
301	21.1	8.8	11.9	chr17	43232365	43232482	(40024959)	+	MER96B	DNA/hAT-Tip100	1	114	(303)	1617360
2018	19.7	0.5	1.4	chr17	43232486	43232908	(40024533)	+	LTR13	LTR/ERVK	1	419	(588)	1617361
12	11.1	0.0	8.6	chr17	43720762	43720796	(39536645)	+	(GCCTCC)n	Simple_repeat	1	35	(0)	1618471
3747	9.7	1.9	8.1	chr17	44180046	44181576	(39075865)	+	SVA_F	Retroposon/SVA	382	1108	(267)	1619405
7311	5.6	2.6	0.0	chr17	44340426	44341299	(38916142)	+	MER11D	LTR/ERVK	1	897	(0)	1619746
2570	5.9	0.0	0.0	chr17	44344624	44344926	(38912515)	+	AluSc	SINE/Alu	3	305	(4)	1619758
6499	18.2	3.2	1.9	chr17	44565321	44566500	(38690941)	C	HUERS-P2-int	LTR/ERV1	(1539)	1549	355	1620218
9985	5.6	2.7	4.7	chr17	46252374	46253788	(37003653)	C	SVA_D	Retroposon/SVA	(0)	1386	1	1623705
6706	5.1	1.4	0.9	chr17	46534195	46535048	(36722393)	C	SVA_C	Retroposon/SVA	(0)	1384	527	1624266
676	23.6	0.7	0.7	chr17	46535049	46535193	(36722248)	C	AluJb	SINE/Alu	(166)	146	2	1624265
1781	15.9	3.7	0.7	chr17	47102715	47103004	(36154437)	+	AluSz	SINE/Alu	1	299	(13)	1625341
2761	16.9	0.2	5.8	chr17	47103005	47103108	(36154333)	+	MER66B	LTR/ERV1	387	486	(0)	1625339
1053	24.2	4.8	4.1	chr17	47103109	47103238	(36154203)	+	MLT1A	LTR/ERVL-MaLR	246	374	(0)	1625332
9425	2.6	1.4	21.0	chr17	47419916	47421644	(35835797)	+	SVA_D	Retroposon/SVA	1	1386	(0)	1625943
1049	10.5	0.7	0.0	chr17	47500916	47501067	(35756374)	+	L1PB3	LINE/L1	6002	6154	(0)	1626124
2452	4.8	0.0	2.0	chr17	47501090	47501381	(35756060)	+	AluY	SINE/Alu	2	287	(24)	1626125
2361	10.6	0.0	0.0	chr17	49125148	49125459	(34131982)	C	AluSq2	SINE/Alu	(1)	312	1	1629265
23477	5.0	1.3	0.8	chr17	49125460	49125557	(34131884)	C	LTR19-int	LTR/ERV1	(2860)	2726	2629	1629264
6908	7.1	1.2	2.7	chr17	49125558	49126516	(34130925)	+	SVA_D	Retroposon/SVA	443	1386	(0)	1629266
9326	6.1	1.0	18.1	chr17	49418829	49420485	(33836956)	C	SVA_A	Retroposon/SVA	(13)	1374	4	1629909
18	6.3	0.0	7.7	chr17	49576728	49576766	(33680675)	+	(TCCC)n	Simple_repeat	1	39	(0)	1630190
16	19.0	1.6	7.8	chr17	50149983	50150045	(33107396)	+	(GCC)n	Simple_repeat	1	64	(0)	1631237
14	23.2	2.4	0.0	chr17	50150091	50150131	(33107310)	+	(CGG)n	Simple_repeat	1	42	(0)	1631238
239	28.4	3.8	7.3	chr17	50479430	50479539	(32777902)	+	MIRc	SINE/MIR	114	219	(43)	1631865
282	14.9	0.0	0.0	chr17	50480151	50480197	(32777244)	C	L2b	LINE/L2	(0)	3375	3329	1631866
325	29.9	8.6	0.0	chr17	50480235	50480361	(32777080)	+	L2a	LINE/L2	3282	3420	(6)	1631867
276	25.0	3.5	3.5	chr17	51153888	51153974	(32103467)	+	L2c	LINE/L2	3299	3385	(2)	1633249
200	15.4	9.3	2.5	chr17	51153987	51154026	(32103415)	C	L2b	LINE/L2	(2)	3373	3331	1633250
3915	18.1	9.6	5.2	chr17	53858381	53859401	(29398040)	+	MER11C	LTR/ERVK	1	1071	(0)	1637294
9986	3.1	0.0	19.9	chr17	58141795	58143521	(25113920)	+	SVA_D	Retroposon/SVA	1	1384	(2)	1644538
7735	6.5	1.8	1.3	chr17	59393511	59395106	(23862335)	C	SVA_D	Retroposon/SVA	(2)	1384	22	1647148
7406	6.5	1.6	1.5	chr17	59500001	59501165	(23756276)	+	SVA_D	Retroposon/SVA	398	1385	(1)	1647386
2658	11.3	2.9	8.9	chr17	60550878	60551918	(22705523)	+	SVA_F	Retroposon/SVA	382	857	(518)	1649512
15	13.9	0.0	0.0	chr17	61388620	61388643	(21868798)	+	(A)n	Simple_repeat	1	24	(0)	1650991
779	20.7	0.7	0.7	chr17	64874116	64874260	(18383181)	+	AluJr4	SINE/Alu	2	146	(166)	1657501
6922	4.2	1.3	0.8	chr17	64874261	64875114	(18382327)	+	SVA_C	Retroposon/SVA	527	1384	(0)	1657502
15	28.8	1.9	6.5	chr17	64975604	64975708	(18281733)	+	(ACGCC)n	Simple_repeat	1	107	(0)	1657692
2324	10.0	0.7	0.0	chr17	64976251	64976560	(18280881)	C	AluSx1	SINE/Alu	(0)	312	1	1657693
23	23.1	3.9	1.2	chr17	65560866	65560943	(17696498)	+	(GCCCCG)n	Simple_repeat	1	81	(0)	1658889
10235	4.9	4.7	0.3	chr17	65836797	65838106	(17419335)	+	SVA_B	Retroposon/SVA	13	1383	(0)	1659336
500	24.8	1.5	0.0	chr17	66268676	66268804	(16988637)	C	MLT1N2	LTR/ERVL-MaLR	(0)	562	432	1659987
7110	5.5	1.5	2.9	chr17	66268937	66269993	(16987448)	+	SVA_F	Retroposon/SVA	421	1375	(0)	1659988
487	11.8	0.0	0.0	chr17	68019900	68019967	(15237474)	C	tRNA-Arg-AGG	tRNA	(6)	70	3	1663342
443	28.6	5.2	1.2	chr17	68020281	68020446	(15236995)	C	MER5B	DNA/hAT-Charlie	(5)	173	1	1663343
24	20.3	0.9	9.2	chr17	68205304	68205411	(15052030)	+	(CGCGCCC)n	Simple_repeat	1	109	(0)	1663741
2465	8.1	0.0	0.3	chr17	68247054	68247360	(15010081)	+	AluSx1	SINE/Alu	2	307	(5)	1663829
9513	5.3	0.3	8.4	chr17	69195560	69197005	(14060436)	C	SVA_B	Retroposon/SVA	(0)	1383	55	1665350
592	21.4	14.2	5.0	chr17	73657370	73657515	(9599926)	+	L1MC5	LINE/L1	9121	9302	(2)	1672726
232	36.1	11.6	4.5	chr17	73657575	73657948	(9599493)	+	L2b	LINE/L2	2922	3325	(50)	1672722
18	31.8	1.7	5.0	chr17	75047210	75047279	(8210162)	+	(CGG)n	Simple_repeat	1	116	(0)	1675237
13	14.3	2.3	6.7	chr17	75047280	75047323	(8210118)	+	(GGCGG)n	Simple_repeat	1	45	(0)	1675238
16	9.1	5.4	2.6	chr17	75765228	75765264	(7492177)	+	(CCCGC)n	Simple_repeat	1	39	(0)	1676725
12	6.2	4.9	9.3	chr17	75878098	75878138	(7379303)	+	(AGGC)n	Simple_repeat	1	43	(0)	1676937
28	16.6	1.2	7.0	chr17	75878221	75878305	(7379136)	+	G-rich	Low_complexity	1	86	(0)	1676938
333	27.8	2.8	7.0	chr17	76453495	76453703	(6803738)	C	L2b	LINE/L2	(10)	3416	3210	1678056
6948	7.7	2.7	0.0	chr17	78082075	78082947	(5174494)	C	MER11D	LTR/ERVK	(0)	897	1	1681170
2196	8.6	4.2	3.0	chr17	78187686	78187989	(5069452)	+	AluSg	SINE/Alu	2	309	(1)	1681348
2246	11.1	0.0	0.0	chr17	78213748	78214044	(5043397)	C	AluSq2	SINE/Alu	(16)	297	1	1681420
17	19.2	3.4	4.9	chr17	78925303	78925363	(4332078)	+	(GGC)n	Simple_repeat	1	60	(0)	1682695
12	24.5	2.6	7.5	chr17	78925564	78925641	(4331800)	+	(CCCGGAC)n	Simple_repeat	1	80	(0)	1682696
93	18.9	8.6	4.0	chr17	79581920	79582220	(3675221)	+	(GCCTGT)n	Simple_repeat	1	429	(25)	1683618
12	45.3	0.0	2.0	chr17	79582221	79582321	(3675120)	+	(TGTA)n	Simple_repeat	1	101	(0)	1683619
93	18.9	8.6	4.0	chr17	79582322	79582337	(3675104)	+	(GCCTGT)n	Simple_repeat	430	454	(0)	1683618
1903	13.6	6.5	0.0	chr17	79582523	79582809	(3674632)	+	AluJb	SINE/Alu	3	309	(3)	1683620
30	0.0	0.0	0.0	chr17	79616583	79616608	(3640833)	+	(AC)n	Simple_repeat	1	26	(0)	1683654
212	36.2	9.6	2.4	chr17	79686011	79686174	(3571267)	C	L2c	LINE/L2	(201)	3186	3010	1683754
300	25.3	15.4	1.9	chr17	81673518	81673674	(1583767)	C	LTR52	LTR/ERVL	(228)	193	12	1686628
590	15.2	0.0	2.8	chr17	81673668	81673824	(1583617)	+	SVA_F	Retroposon/SVA	441	631	(744)	1686629
3870	8.5	2.5	5.7	chr17	81797889	81798717	(1458724)	C	SVA_E	Retroposon/SVA	(520)	862	190	1686742
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
8275	6.6	8.5	0.5	chr17	82453201	82454457	(802984)	C	SVA_A	Retroposon/SVA	(1)	1386	20	1687659
29	18.7	0.0	4.1	chr17	82648451	82648523	(608918)	+	(CGTG)n	Simple_repeat	1	73	(0)	1688030
156	18.1	1.6	0.6	chr17	82648573	82648887	(608554)	+	G-rich	Low_complexity	1	320	(0)	1688031
531	24.5	22.2	0.0	chr17	82946625	82946873	(310568)	+	L1ME3B	LINE/L1	2898	3217	(2929)	1688414
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
17	15.4	6.2	5.8	chr18	3450073	3450137	(76923148)	+	(GCG)n	Simple_repeat	1	69	(0)	1694438
14	18.7	5.0	4.8	chr18	3450196	3450255	(76923030)	+	GA-rich	Low_complexity	1	63	(0)	1694439
351	24.2	2.9	4.8	chr18	5488775	5488878	(74884407)	+	L3b	LINE/CR1	5037	5138	(94)	1697289
12	17.5	3.1	0.0	chr18	7568401	7568432	(72804853)	+	(TGCCC)n	Simple_repeat	1	33	(0)	1700300
6365	6.6	0.0	32.6	chr18	10505447	10507407	(69865878)	C	SVA_A	Retroposon/SVA	(13)	1374	53	1704629
560	16.9	15.0	1.4	chr18	10526472	10526615	(69846670)	C	MER20	DNA/hAT-Charlie	(52)	167	1	1704653
1915	15.5	4.8	1.0	chr18	11613105	11613511	(68759774)	+	SVA_F	Retroposon/SVA	458	857	(518)	1706057
4842	11.6	3.6	35.7	chr18	11613518	11614796	(68758489)	+	SVA_B	Retroposon/SVA	421	1167	(216)	1706057
4928	10.3	3.9	39.0	chr18	11647328	11648518	(68724767)	+	SVA_B	Retroposon/SVA	421	1167	(216)	1706142
18	19.1	3.0	5.8	chr18	12068425	12068491	(68304794)	+	(CCG)n	Simple_repeat	1	69	(0)	1706874
13	19.8	0.0	2.7	chr18	12068499	12068535	(68304750)	+	(CCCCAGG)n	Simple_repeat	1	37	(0)	1706875
8718	7.7	7.5	0.2	chr18	12242897	12244176	(68129109)	+	SVA_A	Retroposon/SVA	6	1387	(0)	1707070
18	0.0	0.0	0.0	chr18	13501487	13501509	(66871776)	+	(CTGT)n	Simple_repeat	1	23	(0)	1709166
2723	13.5	4.0	7.3	chr18	14222334	14222878	(66150407)	+	SVA_A	Retroposon/SVA	347	872	(515)	1710038
1389	14.1	3.7	1.5	chr18	14222885	14223150	(66150135)	+	SVA_F	Retroposon/SVA	421	692	(683)	1710039
2098	14.0	6.6	1.2	chr18	14223152	14223564	(66149721)	+	SVA_F	Retroposon/SVA	421	857	(518)	1710039
6200	11.7	6.0	77.8	chr18	14223572	14225651	(66147634)	+	SVA_A	Retroposon/SVA	422	1386	(1)	1710040
6279	14.6	6.1	53.9	chr18	14854909	14857903	(65515382)	C	SVA_A	Retroposon/SVA	(3)	1384	404	1710925
1799	17.1	6.6	1.5	chr18	14859721	14860587	(65512698)	C	SVA_F	Retroposon/SVA	(518)	857	421	1710925
2114	22.5	2.9	2.5	chr18	14860588	14860709	(65512576)	+	L1PA15-16	LINE/L1	2444	2564	(4289)	1710926
9227	7.0	1.2	8.4	chr18	21137044	21138519	(59234766)	C	SVA_A	Retroposon/SVA	(13)	1374	6	1711975
12	25.1	0.0	4.3	chr18	21242856	21242901	(59130384)	+	G-rich	Low_complexity	1	46	(0)	1712210
2186	6.9	0.0	0.7	chr18	21611831	21612107	(58761178)	C	AluSq	SINE/Alu	(5)	308	34	1712919
570	24.9	5.4	4.9	chr18	23716754	23716956	(56656329)	+	MIR	SINE/MIR	17	220	(42)	1716750
4824	7.3	3.0	1.7	chr18	24642169	24643179	(55730106)	C	MER11A	LTR/ERVK	(0)	1266	1	1718285
329	25.0	8.3	4.3	chr18	24891107	24891244	(55482041)	C	L1MEg	LINE/L1	(5364)	720	577	1718641
800	22.2	13.9	3.1	chr18	24891259	24891546	(55481739)	C	MLT1F	LTR/ERVL-MaLR	(57)	491	168	1718636
426	30.5	4.9	5.6	chr18	26429522	26429652	(53943633)	+	LTR85c	LTR/Gypsy?	663	794	(29)	1720901
410	25.7	4.6	2.0	chr18	31650576	31650722	(48722563)	+	MLT1N2	LTR/ERVL-MaLR	406	556	(6)	1728001
1089	19.9	2.3	3.4	chr18	31710494	31710758	(48662527)	+	MLT1C	LTR/ERVL-MaLR	206	467	(0)	1728091
41	0.0	2.6	0.0	chr18	31710811	31710849	(48662436)	+	(AC)n	Simple_repeat	1	40	(0)	1728092
1994	8.6	1.4	1.0	chr18	31711258	31711550	(48661735)	C	L1PREC2	LINE/L1	(2)	6158	5865	1728093
7854	3.1	0.0	35.9	chr18	31959493	31961654	(48411631)	+	SVA_D	Retroposon/SVA	1	1386	(0)	1728524
317	31.6	2.5	0.0	chr18	32017867	32017983	(48355302)	+	L2a	LINE/L2	3307	3426	(0)	1728642
1087	6.7	0.0	4.0	chr18	32017986	32018135	(48355150)	C	AluSz	SINE/Alu	(167)	145	2	1728648
1905	10.7	0.0	0.4	chr18	32037365	32037641	(48335644)	C	AluSc8	SINE/Alu	(0)	311	31	1728695
676	24.3	1.7	4.0	chr18	34978814	34978989	(45394296)	+	MER5B	DNA/hAT-Charlie	1	172	(6)	1732685
6363	6.3	1.3	8.8	chr18	36076918	36078707	(44294578)	C	SVA_D	Retroposon/SVA	(23)	1363	1	1734263
13	22.6	2.4	0.0	chr18	46333992	46334032	(34039253)	+	(GCTGC)n	Simple_repeat	1	42	(0)	1748472
14	21.4	1.4	8.4	chr18	48948747	48948816	(31424469)	+	(GCCCCG)n	Simple_repeat	1	71	(0)	1752707
3965	9.0	5.9	3.7	chr18	49808450	49809479	(30563806)	C	MER11A	LTR/ERVK	(0)	1266	1	1754243
9299	6.9	0.1	13.6	chr18	50416885	50418457	(29954828)	C	SVA_A	Retroposon/SVA	(0)	1387	27	1755086
9469	6.5	0.3	12.8	chr18	51116550	51118078	(29255207)	C	SVA_D	Retroposon/SVA	(0)	1386	49	1756378
4655	5.0	2.2	2.7	chr18	51360525	51361126	(29012159)	C	SVA_A	Retroposon/SVA	(11)	1376	778	1756836
1688	20.4	7.0	0.0	chr18	51361130	51361486	(29011799)	C	L1MDa	LINE/L1	(6236)	397	14	1756831
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
800	20.0	0.0	0.0	chr18	54278181	54278310	(26094975)	+	FLAM_A	SINE/Alu	1	130	(12)	1761021
13	17.4	2.3	4.5	chr18	58044643	58044685	(22328600)	+	(GCGCCGG)n	Simple_repeat	1	44	(0)	1766704
208	32.9	2.1	1.8	chr18	62186367	62186485	(18186800)	+	MIR3	SINE/MIR	108	232	(36)	1773093
13	3.3	12.1	2.7	chr18	62325382	62325414	(18047871)	+	(GCT)n	Simple_repeat	1	37	(0)	1773279
7723	3.3	0.0	0.0	chr18	64144672	64145568	(16227717)	+	MER11D	LTR/ERVK	1	897	(0)	1776083
12	19.9	9.6	0.0	chr18	69400657	69400708	(10972577)	+	G-rich	Low_complexity	1	57	(0)	1783142
16	18.9	0.0	0.0	chr18	69400822	69400851	(10972434)	+	(C)n	Simple_repeat	1	30	(0)	1783143
24667	7.7	1.6	0.5	chr18	70098646	70102889	(10270396)	C	L1PA8A	LINE/L1	(0)	6131	1848	1784068
6033	7.9	4.0	1.8	chr18	70102890	70103775	(10269510)	+	SVA_A	Retroposon/SVA	482	1387	(0)	1784069
10184	6.7	1.0	10.9	chr18	79072149	79073684	(1299601)	C	SVA_B	Retroposon/SVA	(0)	1383	2	1795145
1031	26.8	13.8	2.2	chr18	79200300	79200694	(1172591)	+	L1MEf	LINE/L1	2654	3070	(3249)	1795300
16	21.7	7.7	2.4	chr18	79393786	79393863	(979422)	+	G-rich	Low_complexity	1	84	(0)	1795467
13	21.3	0.0	0.0	chr18	79400123	79400155	(973130)	+	G-rich	Low_complexity	1	33	(0)	1795474
8904	20.6	10.6	2.4	chr18	79928455	79931730	(441555)	+	L1M4b	LINE/L1	12	3635	(3371)	1795900
2938	10.7	1.1	0.9	chr18	80262297	80262869	(110416)	+	TAR1	Satellite/telo	645	1218	(893)	1796345
1685	10.6	11.8	0.0	chr19	970493	970771	(57646845)	C	AluSg	SINE/Alu	(0)	310	2	1798000
233	16.7	0.0	0.0	chr19	970821	970862	(57646754)	C	Tigger16a	DNA/TcMar-Tigger	(793)	164	123	1798001
6104	6.5	1.4	5.6	chr19	1498619	1500000	(57117616)	C	SVA_D	Retroposon/SVA	(6)	1380	295	1798882
529	26.1	3.2	0.7	chr19	2242230	2242457	(56375159)	C	MLT1D	LTR/ERVL-MaLR	(21)	446	226	1800390
496	17.4	6.9	1.6	chr19	2242477	2242599	(56375017)	C	MLT1D	LTR/ERVL-MaLR	(364)	141	12	1800390
372	30.0	17.7	1.7	chr19	2368375	2368773	(56248843)	C	L2a	LINE/L2	(344)	3075	2558	1800622
18	17.1	4.3	0.0	chr19	2867693	2867711	(55749905)	+	A-rich	Low_complexity	1	47	(0)	1801809
19	8.2	0.0	0.0	chr19	2867712	2867737	(55749879)	+	(A)n	Simple_repeat	1	26	(0)	1801810
33	24.6	1.2	7.4	chr19	3577151	3577310	(55040306)	+	(CCCCTCC)n	Simple_repeat	1	162	(0)	1803569
2214	9.6	0.0	0.3	chr19	4212851	4213141	(54404475)	+	AluSc	SINE/Alu	1	290	(19)	1805048
9599	3.9	0.8	20.8	chr19	5701300	5703031	(52914585)	+	SVA_D	Retroposon/SVA	2	1383	(3)	1808607
1800	15.0	0.3	7.8	chr19	7887841	7888173	(50729443)	C	AluJo	SINE/Alu	(4)	308	1	1813920
16	23.7	0.0	3.8	chr19	7888424	7888476	(50729140)	+	G-rich	Low_complexity	1	53	(0)	1813921
2108	12.4	8.6	1.2	chr19	9488751	9489093	(49128523)	+	MSTA	LTR/ERVL-MaLR	1	371	(57)	1817505
1558	19.3	4.0	3.0	chr19	9489207	9489574	(49128042)	C	SVA_F	Retroposon/SVA	(536)	839	468	1817506
9894	3.6	0.0	15.6	chr19	9679321	9680934	(48936682)	+	SVA_C	Retroposon/SVA	15	1377	(7)	1817914
481	27.7	7.8	7.5	chr19	10095592	10095923	(48521693)	C	MER46C	DNA/TcMar-Tigger	(0)	338	6	1818888
368	17.2	15.2	3.0	chr19	11137656	11137787	(47479829)	+	MIRb	SINE/MIR	25	175	(93)	1821542
10586	5.5	1.4	3.4	chr19	11276125	11277533	(47340083)	C	SVA_B	Retroposon/SVA	(2)	1381	1	1821908
12	16.4	7.8	3.6	chr19	11578557	11578607	(47039009)	+	(CCTG)n	Simple_repeat	1	55	(0)	1822701
9161	5.2	0.9	17.9	chr19	11676263	11677933	(46939683)	C	SVA_B	Retroposon/SVA	(0)	1383	1	1822916
2076	8.6	2.4	3.4	chr19	12059282	12059564	(46558052)	C	AluY	SINE/Alu	(31)	280	1	1823688
1607	17.1	3.1	0.4	chr19	12059981	12060261	(46557355)	+	AluJb	SINE/Alu	3	291	(21)	1823689
5561	10.8	2.9	2.6	chr19	12361748	12362886	(46254730)	+	SVA_C	Retroposon/SVA	55	1044	(339)	1824310
6989	6.3	1.4	2.4	chr19	12467122	12468710	(46148906)	+	SVA_D	Retroposon/SVA	13	1386	(0)	1824490
2454	8.7	0.0	0.0	chr19	12977521	12977820	(45639796)	C	AluSx1	SINE/Alu	(12)	300	1	1825688
300	19.4	1.6	0.0	chr19	13557908	13557969	(45059647)	+	MLT1J2	LTR/ERVL-MaLR	47	109	(335)	1827095
1019	17.9	6.4	0.0	chr19	13558017	13558234	(45059382)	C	Tigger3b	DNA/TcMar-Tigger	(193)	1038	806	1827096
292	10.9	0.0	0.0	chr19	13558235	13558280	(45059336)	+	SVA_F	Retroposon/SVA	507	552	(823)	1827097
503	18.4	0.7	4.4	chr19	13558396	13558523	(45059093)	C	Tigger3b	DNA/TcMar-Tigger	(411)	820	695	1827096
1750	17.4	2.7	0.7	chr19	13688838	13689125	(44928491)	C	AluJo	SINE/Alu	(18)	294	1	1827499
225	32.9	0.0	0.0	chr19	13689150	13689234	(44928382)	+	MamRep137	DNA/TcMar-Tigger	426	510	(0)	1827500
743	23.2	21.4	2.0	chr19	13689274	13689576	(44928040)	+	MLT1J1	LTR/ERVL-MaLR	66	443	(1)	1827501
28	23.7	4.8	5.2	chr19	14690058	14690206	(43927410)	+	(GCGCG)n	Simple_repeat	1	148	(0)	1830169
257	30.5	5.5	0.5	chr19	15556249	15556393	(43061223)	+	MIRb	SINE/MIR	36	187	(43)	1832094
1963	8.4	0.4	1.6	chr19	15822396	15822646	(42794970)	C	AluSx1	SINE/Alu	(23)	289	42	1832585
1875	18.0	0.0	1.0	chr19	15822788	15823092	(42794524)	C	AluJr	SINE/Alu	(10)	302	1	1832586
1707	15.8	7.3	0.4	chr19	16330116	16330393	(42287223)	C	AluJo	SINE/Alu	(12)	300	2	1833731
850	9.2	0.0	2.5	chr19	16330775	16330893	(42286723)	+	AluJo	SINE/Alu	2	117	(195)	1833732
20	12.9	2.3	2.2	chr19	17336295	17336338	(41281278)	+	A-rich	Low_complexity	1	45	(0)	1836057
1237	13.6	0.5	1.1	chr19	17336339	17336529	(41281087)	+	AluJb	SINE/Alu	120	309	(3)	1836058
201	20.4	2.2	0.0	chr19	17336676	17336719	(41280897)	+	MamTip2	DNA/hAT-Tip100	100	144	(161)	1836059
382	32.4	9.2	0.0	chr19	17336833	17337039	(41280577)	C	L2b	LINE/L2	(158)	3217	2990	1836060
9908	2.7	2.5	18.1	chr19	18005017	18006656	(40610960)	C	SVA_D	Retroposon/SVA	(6)	1380	4	1837838
9590	3.8	1.2	7.8	chr19	20295768	20297231	(38320385)	+	SVA_D	Retroposon/SVA	21	1386	(0)	1842412
585	26.8	5.7	5.8	chr19	20692061	20692432	(37925184)	C	L1M4	LINE/L1	(3761)	2877	2509	1843005
6596	8.6	2.6	0.8	chr19	20692433	20693313	(37924303)	+	MER11D	LTR/ERVK	1	897	(0)	1843006
6390	11.7	4.4	39.7	chr19	21258895	21261828	(37355788)	C	SVA_A	Retroposon/SVA	(4)	1383	3	1843736
8127	8.1	8.0	0.9	chr19	21614293	21615546	(37002070)	+	SVA_F	Retroposon/SVA	25	1375	(0)	1844311
11070	3.0	0.1	8.1	chr19	21775160	21776666	(36840950)	+	SVA_D	Retroposon/SVA	1	1386	(0)	1844521
2233	9.4	0.3	0.0	chr19	23686338	23686625	(34930991)	C	AluSq2	SINE/Alu	(24)	289	1	1847041
2721	14.5	0.6	8.5	chr19	23686626	23686677	(34930939)	+	MER57E3	LTR/ERV1	436	487	(0)	1847040
7640	6.9	1.5	22.9	chr19	23963428	23965133	(34652483)	+	SVA_A	Retroposon/SVA	53	1387	(0)	1847402
5712	9.1	3.1	1.7	chr19	29948558	29949954	(28667662)	C	SVA_C	Retroposon/SVA	(216)	1167	1	1851216
13	14.1	3.0	2.9	chr19	32692046	32692078	(25925538)	+	(CCG)n	Simple_repeat	1	34	(0)	1855320
12	13.4	4.2	8.0	chr19	32692415	32692462	(25925154)	+	(CCTGG)n	Simple_repeat	1	50	(0)	1855321
256	30.8	10.6	2.8	chr19	32798674	32798890	(25818726)	C	L1ME4a	LINE/L1	(4)	6120	5885	1855511
261	22.1	1.3	2.5	chr19	32799060	32799138	(25818478)	C	L1ME4c	LINE/L1	(411)	419	342	1855512
284	26.9	6.3	5.6	chr19	32799143	32799284	(25818332)	+	MIRc	SINE/MIR	2	144	(124)	1855513
391	27.5	8.2	2.2	chr19	32799410	32799591	(25818025)	C	L1ME3G	LINE/L1	(714)	210	17	1855514
17	0.0	0.0	0.0	chr19	34677161	34677179	(23940437)	+	(A)n	Simple_repeat	1	19	(0)	1858988
4894	6.9	0.2	0.0	chr19	34797632	34798228	(23819388)	C	MER11D	LTR/ERVK	(299)	598	1	1859155
12739	0.5	0.0	2.1	chr19	36270447	36272042	(22345574)	+	SST1	Satellite/centr	1	1563	(0)	1862253
24	29.7	0.0	2.5	chr19	36272043	36272123	(22345493)	+	(GT)n	Simple_repeat	1	81	(0)	1862254
26	23.7	3.8	3.6	chr19	36272113	36272129	(22345487)	+	(CTGTCT)n	Simple_repeat	1	66	(44)	1862255
36	20.5	1.2	1.2	chr19	36272130	36272209	(22345407)	+	(TC)n	Simple_repeat	1	81	(0)	1862256
26	23.7	3.8	3.6	chr19	36272210	36272218	(22345398)	+	(CTGTCT)n	Simple_repeat	67	110	(0)	1862255
11383	1.6	0.0	2.0	chr19	36308415	36309981	(22307635)	+	SST1	Satellite/centr	1	1535	(28)	1862299
11	21.6	10.9	0.0	chr19	36528911	36528974	(22088642)	+	(TTGTGTGA)n	Simple_repeat	1	71	(0)	1862727
15	16.8	0.0	0.0	chr19	36528950	36528976	(22088640)	+	(GT)n	Simple_repeat	1	27	(0)	1862728
19	21.8	5.0	1.6	chr19	36604933	36604992	(22012624)	+	(CA)n	Simple_repeat	1	63	(0)	1862875
13	14.0	0.0	5.7	chr19	36605285	36605319	(22012297)	+	(GCGCAG)n	Simple_repeat	1	35	(0)	1862876
18	19.3	2.3	2.3	chr19	36605646	36605688	(22011928)	+	(CG)n	Simple_repeat	1	44	(0)	1862877
12	19.4	0.0	5.1	chr19	37370707	37370745	(21246871)	+	(CATTCA)n	Simple_repeat	1	39	(0)	1864323
11	20.5	5.1	0.0	chr19	37371221	37371259	(21246357)	+	G-rich	Low_complexity	1	41	(0)	1864324
14	16.1	0.0	5.1	chr19	38228249	38228300	(20389316)	+	(CCCCAC)n	Simple_repeat	1	49	(0)	1866159
17	26.7	0.0	0.0	chr19	38228376	38228418	(20389198)	+	(CC)n	Simple_repeat	1	43	(0)	1866160
21	24.3	0.0	0.0	chr19	38256748	38256798	(20360818)	+	(TTCA)n	Simple_repeat	1	51	(0)	1866237
2298	9.2	0.0	0.0	chr19	38256810	38257104	(20360512)	C	AluSz	SINE/Alu	(17)	295	1	1866238
343	29.3	5.6	3.7	chr19	38280433	38280623	(20336993)	+	MamRep605	LTR?	564	758	(91)	1866302
378	10.0	0.0	0.0	chr19	38280821	38280870	(20336746)	C	L1MB8	LINE/L1	(16)	6162	6113	1866303
1982	14.5	1.0	0.7	chr19	38807086	38807382	(19810234)	+	AluJb	SINE/Alu	1	298	(14)	1867493
4523	6.1	1.6	3.0	chr19	38807513	38808112	(19809504)	+	SVA_A	Retroposon/SVA	774	1364	(23)	1867494
15	8.6	7.7	2.4	chr19	39342130	39342180	(19275436)	+	(CGCCC)n	Simple_repeat	1	53	(0)	1868895
435	27.9	14.1	0.5	chr19	40548900	40549083	(18068533)	C	L2a	LINE/L2	(215)	3160	2948	1871378
20	19.4	3.8	0.0	chr19	40549435	40549487	(18068129)	+	G-rich	Low_complexity	1	55	(0)	1871384
5451	9.6	1.9	45.2	chr19	40964851	40967429	(17650187)	C	SVA_D	Retroposon/SVA	(339)	1043	54	1872329
4420	15.3	17.1	1.1	chr19	41462248	41463220	(17154396)	C	MER11B	LTR/ERVK	(0)	1236	87	1873491
2224	16.3	10.2	4.7	chr19	41508913	41514972	(17102644)	C	SATR1	Satellite	(88)	6396	1	1873540
778	15.6	0.6	2.5	chr19	41514979	41515136	(17102480)	+	SVA_F	Retroposon/SVA	421	575	(800)	1873543
1644	18.5	3.4	2.6	chr19	41515138	41515553	(17102063)	+	SVA_F	Retroposon/SVA	421	839	(536)	1873544
1901	20.3	9.3	4.9	chr19	41515652	41516250	(17101366)	C	SATR1	Satellite	(330)	625	1	1873545
1922	13.0	5.0	0.3	chr19	42143084	42143367	(16474249)	+	AluSz	SINE/Alu	1	298	(14)	1874673
523	28.3	7.6	6.4	chr19	42143368	42143409	(16474207)	+	L1ME3B	LINE/L1	6166	6207	(35)	1874672
546	32.7	6.7	2.3	chr19	42143647	42144000	(16473616)	+	L2a	LINE/L2	2941	3311	(115)	1874674
12	12.8	5.6	2.6	chr19	42325733	42325768	(16291848)	+	(GCTCCC)n	Simple_repeat	1	38	(0)	1875034
31	0.0	0.0	0.0	chr19	42370844	42370872	(16246744)	+	(G)n	Simple_repeat	1	29	(0)	1875128
1824	7.9	0.0	0.0	chr19	42712688	42712914	(15904702)	C	MER11D	LTR/ERVK	(0)	897	671	1875717
2353	4.0	0.0	0.4	chr19	42712910	42713184	(15904432)	C	MER11D	LTR/ERVK	(623)	274	1	1875717
1845	7.9	0.0	0.0	chr19	43250294	43250520	(15367096)	C	MER11D	LTR/ERVK	(0)	897	671	1876431
2295	4.8	0.4	0.4	chr19	43250516	43250789	(15366827)	C	MER11D	LTR/ERVK	(623)	274	1	1876431
402	24.8	7.5	8.6	chr19	43934794	43934956	(14682660)	C	MIR	SINE/MIR	(40)	222	62	1877949
10102	5.0	0.2	10.2	chr19	44203295	44204831	(14412785)	+	SVA_B	Retroposon/SVA	1	1383	(0)	1878365
6212	7.6	2.8	1.5	chr19	44921135	44922023	(13695593)	C	SVA_D	Retroposon/SVA	(23)	1363	460	1879972
2000	11.8	2.7	0.3	chr19	44922024	44922312	(13695304)	+	AluSz	SINE/Alu	3	298	(14)	1879974
623	28.8	15.0	0.5	chr19	45682849	45683263	(12934353)	C	L2a	LINE/L2	(601)	2818	2333	1881987
12	16.3	7.0	2.2	chr19	45770291	45770333	(12847283)	+	(GCCCCG)n	Simple_repeat	1	46	(0)	1882222
12	18.3	0.0	3.0	chr19	45770724	45770756	(12846860)	+	(CCCGCC)n	Simple_repeat	1	33	(0)	1882223
791	23.4	1.1	1.7	chr19	46513402	46513579	(12104037)	C	MER5B	DNA/hAT-Charlie	(0)	178	2	1883881
274	12.2	2.6	0.5	chr19	46513866	46513924	(12103692)	+	MIRc	SINE/MIR	109	168	(62)	1883882
2019	14.3	0.7	0.0	chr19	46514044	46514350	(12103266)	C	AluSz	SINE/Alu	(3)	309	1	1883883
1069	30.1	14.1	2.4	chr19	46731644	46732623	(11884993)	+	L2a	LINE/L2	2088	3213	(213)	1884395
10848	3.0	1.2	10.7	chr19	47009102	47010634	(11606982)	+	SVA_D	Retroposon/SVA	1	1386	(0)	1885052
191	29.7	9.0	0.9	chr19	47648427	47648538	(10969078)	C	L2a	LINE/L2	(107)	3319	3198	1886682
552	9.2	1.3	0.0	chr19	47648591	47648666	(10968950)	+	AluSq10	SINE/Alu	1	77	(236)	1886683
1934	10.2	8.0	2.8	chr19	47858183	47858467	(10759149)	C	AluSx1	SINE/Alu	(11)	301	1	1887260
13	21.5	4.7	0.0	chr19	48271523	48271565	(10346051)	+	G-rich	Low_complexity	1	45	(0)	1888330
2407	8.5	0.0	2.5	chr19	48468381	48468698	(10148918)	+	AluSg	SINE/Alu	1	310	(0)	1888824
12	19.9	2.9	0.0	chr19	48490980	48491014	(10126602)	+	GA-rich	Low_complexity	1	36	(0)	1888865
10573	3.3	0.1	15.3	chr19	50085714	50087346	(8530270)	+	SVA_D	Retroposon/SVA	1	1385	(1)	1892595
6972	6.3	16.4	1.2	chr19	50390573	50391720	(8225896)	C	SVA_F	Retroposon/SVA	(1)	1374	18	1893403
13	13.6	4.3	6.2	chr19	50725315	50725360	(7892256)	+	(GCCCA)n	Simple_repeat	1	48	(0)	1894171
613	20.6	6.4	7.0	chr19	52022112	52022283	(6595333)	C	MER21C	LTR/ERVL	(37)	901	731	1896652
878	14.0	0.0	7.6	chr19	52022286	52022470	(6595146)	+	SVA_F	Retroposon/SVA	422	592	(783)	1896653
7516	6.8	0.9	29.8	chr19	52719770	52721723	(5895893)	C	SVA_A	Retroposon/SVA	(2)	1385	1	1898040
10955	2.8	4.1	0.9	chr19	53269386	53270726	(5346890)	C	SVA_D	Retroposon/SVA	(0)	1386	1	1899053
13	9.8	0.0	10.0	chr19	53431887	53431926	(5185690)	+	(CCGCC)n	Simple_repeat	1	40	(0)	1899347
2488	9.0	0.3	0.0	chr19	53853210	53853521	(4764095)	C	AluSp	SINE/Alu	(0)	313	1	1900430
2223	10.5	0.3	0.0	chr19	54392687	54392981	(4224635)	+	AluSc8	SINE/Alu	5	300	(11)	1901635
2373	11.3	0.3	3.5	chr19	54392982	54393287	(4224329)	+	THE1B	LTR/ERVL-MaLR	57	363	(1)	1901634
2883	14.3	0.7	0.4	chr19	54393288	54393736	(4223880)	C	LTR72	LTR/ERV1	(66)	453	4	1901633
232	30.1	5.2	0.4	chr19	55670357	55670454	(2947162)	C	L2a	LINE/L2	(18)	3408	3251	1904263
13	15.3	4.1	5.9	chr2	950865	950913	(241242616)	+	(GGAGCC)n	Simple_repeat	1	51	(0)	1911760
10221	3.3	0.3	10.4	chr2	3568504	3570040	(238623489)	C	SVA_D	Retroposon/SVA	(1)	1385	5	1914672
8897	2.4	0.0	29.9	chr2	10901947	10903908	(231289621)	C	SVA_F	Retroposon/SVA	(0)	1375	1	1925697
8909	5.4	1.1	11.6	chr2	11759208	11760727	(230432802)	C	SVA_A	Retroposon/SVA	(26)	1361	3	1927221
215	32.5	6.7	16.0	chr2	14903978	14904127	(227289402)	+	L2b	LINE/L2	3146	3280	(95)	1931875
1364	20.2	1.8	3.2	chr2	14904132	14904501	(227289028)	C	MLT2B3	LTR/ERVL	(0)	554	193	1931876
5374	6.5	1.6	1.6	chr2	15679876	15681090	(226512439)	C	SVA_D	Retroposon/SVA	(339)	1047	1	1933107
187	26.9	4.3	0.0	chr2	17831124	17831190	(224362339)	+	MIR	SINE/MIR	122	191	(71)	1936591
7648	8.0	13.1	3.9	chr2	19615106	19616249	(222577280)	C	MER11A	LTR/ERVK	(0)	1266	1	1939059
208	21.2	4.0	3.1	chr2	20650799	20650882	(221542647)	+	MIRc	SINE/MIR	90	179	(89)	1940694
14	10.3	3.0	2.9	chr2	20651130	20651162	(221542367)	+	(CCCTG)n	Simple_repeat	1	34	(0)	1940695
10318	2.0	0.1	9.8	chr2	27358784	27360255	(214833274)	+	SVA_F	Retroposon/SVA	47	1375	(0)	1951664
15	8.4	0.0	6.9	chr2	27381081	27381120	(214812409)	+	(AC)n	Simple_repeat	1	37	(0)	1951699
6834	6.1	0.6	19.3	chr2	27593795	27595164	(214598365)	C	SVA_A	Retroposon/SVA	(263)	1124	13	1952090
21	24.4	1.4	2.8	chr2	32064106	32064176	(210129353)	+	(GCGCCG)n	Simple_repeat	1	72	(0)	1959449
5921	7.5	3.9	5.7	chr2	32293074	32295072	(209898457)	C	SVA_D	Retroposon/SVA	(0)	1386	29	1959977
14	20.2	0.0	0.0	chr2	32865430	32865476	(209328053)	+	(TCTC)n	Simple_repeat	1	47	(0)	1961099
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
11208	4.9	2.0	0.7	chr2	33760864	33762227	(208431302)	C	SVA_C	Retroposon/SVA	(0)	1384	4	1962498
632	15.1	0.0	4.8	chr2	36662758	36662903	(205530626)	+	SVA_A	Retroposon/SVA	427	565	(822)	1966321
234	31.2	4.9	0.0	chr2	37323807	37323883	(204869646)	C	MamRTE1	LINE/RTE-BovB	(10)	3802	3722	1967536
9102	2.6	0.4	21.6	chr2	37932082	37933815	(204259714)	C	SVA_D	Retroposon/SVA	(20)	1366	3	1968489
6435	6.6	1.1	2.3	chr2	37963318	37964247	(204229282)	C	SVA_C	Retroposon/SVA	(1)	1383	465	1968512
9935	4.6	1.0	9.9	chr2	37976844	37978351	(204215178)	C	SVA_B	Retroposon/SVA	(0)	1383	12	1968527
2361	8.4	0.3	1.3	chr2	38119139	38119446	(204074083)	+	AluSq2	SINE/Alu	9	313	(0)	1968714
10014	2.9	0.0	19.6	chr2	39627523	39629246	(202564283)	C	SVA_D	Retroposon/SVA	(0)	1386	1	1971524
5436	5.1	2.4	7.7	chr2	42606214	42607056	(199586473)	C	SVA_F	Retroposon/SVA	(520)	855	59	1975985
6767	5.7	1.2	4.7	chr2	43677204	43678719	(198514810)	C	SVA_D	Retroposon/SVA	(6)	1380	32	1977892
810	14.4	2.8	3.9	chr2	44061561	44061740	(198131789)	C	SVA_E	Retroposon/SVA	(710)	672	495	1978485
1230	19.9	11.1	5.1	chr2	44061737	44062091	(198131438)	+	LTR48	LTR/ERV1	77	455	(332)	1978486
6604	7.9	2.4	6.1	chr2	44066369	44068379	(198125150)	C	SVA_D	Retroposon/SVA	(23)	1363	1	1978501
5301	9.0	2.9	2.1	chr2	44587440	44588427	(197605102)	+	SVA_D	Retroposon/SVA	1	870	(517)	1979452
1657	10.3	2.6	38.3	chr2	44588153	44588659	(197604870)	+	SVA_F	Retroposon/SVA	421	855	(520)	1979452
24	19.7	1.2	6.9	chr2	47175810	47175896	(195017633)	+	(CGCC)n	Simple_repeat	1	82	(0)	1983480
558	16.9	7.8	4.4	chr2	47249365	47249500	(194944029)	C	MamRep488	DNA/hAT-Tip100	(78)	141	1	1983629
6763	4.2	0.2	36.4	chr2	47432431	47434571	(194758958)	C	SVA_D	Retroposon/SVA	(17)	1369	4	1984090
1715	15.7	4.0	1.7	chr2	48319614	48319785	(193873744)	C	AluJo	SINE/Alu	(12)	300	129	1985755
27	0.0	0.0	0.0	chr2	48319786	48319811	(193873718)	+	(T)n	Simple_repeat	1	26	(0)	1985756
1715	15.7	4.0	1.7	chr2	48319812	48319931	(193873598)	C	AluJo	SINE/Alu	(184)	128	1	1985755
11179	3.4	0.0	12.8	chr2	54485158	54486746	(187706783)	+	SVA_D	Retroposon/SVA	1	1386	(0)	1994450
6956	7.4	2.0	1.9	chr2	54698422	54699828	(187493701)	+	SVA_C	Retroposon/SVA	53	1384	(0)	1994700
2626	6.8	0.0	0.0	chr2	56020665	56020992	(186172537)	+	AluY	SINE/Alu	1	311	(0)	1996880
13	18.5	2.6	2.5	chr2	58428270	58428308	(183765221)	+	GA-rich	Low_complexity	1	40	(0)	1999768
2185	11.1	0.7	0.3	chr2	61467024	61467321	(180726208)	+	AluSg	SINE/Alu	1	299	(11)	2004387
662	18.7	0.0	0.0	chr2	61467342	61467448	(180726081)	C	FLAM_A	SINE/Alu	(35)	107	1	2004388
20	8.5	5.3	6.7	chr2	63057453	63057509	(179136020)	+	A-rich	Low_complexity	1	60	(0)	2007380
22	7.4	0.0	0.0	chr2	64676230	64676258	(177517271)	+	(A)n	Simple_repeat	1	29	(0)	2009749
17	0.0	0.0	0.0	chr2	65228427	65228445	(176965084)	+	(A)n	Simple_repeat	1	19	(0)	2010877
1747	17.6	4.0	3.2	chr2	68526993	68528158	(173665371)	C	SVA_F	Retroposon/SVA	(518)	857	421	2015740
631	10.8	1.2	0.0	chr2	68528159	68528241	(173665288)	C	AluSc	SINE/Alu	(225)	84	1	2015741
5284	8.4	3.1	2.0	chr2	68628860	68629884	(173563645)	C	MER11A	LTR/ERVK	(0)	1266	1	2015865
6817	9.0	18.6	0.5	chr2	69259642	69260677	(172932852)	+	MER11A	LTR/ERVK	1	1266	(0)	2016752
16	18.9	2.9	7.0	chr2	69387229	69387297	(172806232)	+	(CCGCCGC)n	Simple_repeat	1	71	(0)	2016984
12	26.2	0.0	2.3	chr2	69387605	69387647	(172805882)	+	(GCAGGAA)n	Simple_repeat	1	43	(0)	2016985
2530	3.5	0.3	0.0	chr2	70124690	70124974	(172068555)	+	AluYc	SINE/Alu	1	286	(13)	2018443
738	17.9	1.1	11.5	chr2	70125461	70125606	(172067923)	C	L1MB4	LINE/L1	(179)	6001	5877	2018444
10568	6.5	1.4	0.4	chr2	70266465	70267815	(171925714)	C	SVA_B	Retroposon/SVA	(0)	1383	19	2018764
13	17.7	4.2	4.0	chr2	70554078	70554125	(171639404)	+	G-rich	Low_complexity	1	50	(0)	2019278
5594	11.7	14.6	4.8	chr2	71232779	71233887	(170959642)	C	MER11B	LTR/ERVK	(0)	1236	1	2020342
10734	3.8	0.2	10.7	chr2	71542375	71543918	(170649611)	C	SVA_C	Retroposon/SVA	(2)	1382	1	2020810
6633	7.2	2.0	5.4	chr2	74123568	74124936	(168068593)	+	SVA_B	Retroposon/SVA	344	1382	(1)	2024832
5640	7.4	4.3	1.6	chr2	75724618	75725805	(166467724)	+	SVA_D	Retroposon/SVA	53	1386	(0)	2027425
4884	3.5	0.3	6.9	chr2	86345910	86346561	(155846968)	C	SVA_A	Retroposon/SVA	(0)	1387	779	2042504
235	27.5	14.3	3.8	chr2	86346561	86346666	(155846863)	+	Arthur1B	DNA/hAT-Tip100	1107	1225	(0)	2042505
250	21.0	7.4	17.8	chr2	86346668	86346864	(155846665)	C	L1ME3Cz	LINE/L1	(809)	188	14	2042506
6415	5.3	0.7	33.6	chr2	86544344	86546400	(155647129)	C	SVA_A	Retroposon/SVA	(0)	1387	13	2042820
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
21	8.8	2.8	0.0	chr2	91478098	91478133	(150715396)	+	(CCG)n	Simple_repeat	1	37	(0)	2048369
11	25.1	0.0	4.3	chr2	94857273	94857318	(147336211)	+	A-rich	Low_complexity	1	46	(0)	2049858
292	29.5	3.1	0.0	chr2	96557079	96557173	(145636356)	+	MER117	DNA/hAT-Charlie	100	197	(0)	2052342
16	16.6	0.0	0.0	chr2	99336696	99336722	(142856807)	+	(T)n	Simple_repeat	1	27	(0)	2056309
328	23.8	0.9	0.9	chr2	99336753	99336858	(142856671)	C	L1ME3	LINE/L1	(50)	6112	6007	2056310
7304	5.3	2.7	0.0	chr2	101244226	101245098	(140948431)	+	MER11D	LTR/ERVK	1	897	(0)	2059253
19	18.1	0.0	0.0	chr2	102356190	102356222	(139837307)	+	(T)n	Simple_repeat	1	33	(0)	2060973
5704	7.0	14.3	11.0	chr2	103591423	103592551	(138600978)	+	MER11A	LTR/ERVK	1	1266	(0)	2062499
358	28.0	9.0	3.2	chr2	105776911	105777098	(136416431)	C	LTR33A	LTR/ERVL	(25)	495	296	2065484
286	28.1	4.8	2.8	chr2	105777216	105777349	(136416180)	C	LTR33A	LTR/ERVL	(261)	242	87	2065484
3736	12.9	10.3	3.6	chr2	106235011	106236109	(135957420)	C	MER11A	LTR/ERVK	(0)	1236	2	2066061
12	4.5	4.0	3.9	chr2	111120579	111120603	(131072926)	+	(GCC)n	Simple_repeat	1	26	(0)	2073127
10861	4.7	0.6	5.1	chr2	111672042	111673490	(130520039)	+	SVA_B	Retroposon/SVA	1	1383	(0)	2073848
968	20.4	1.5	6.0	chr2	112433719	112434000	(129759529)	+	L1M4	LINE/L1	4215	4483	(1663)	2075094
6810	6.6	3.2	0.0	chr2	116260276	116261141	(125932388)	+	MER11D	LTR/ERVK	3	897	(0)	2080860
2286	18.7	3.8	0.5	chr2	121803679	121804087	(120389442)	+	MSTB1	LTR/ERVL-MaLR	10	432	(0)	2089387
185	21.6	2.6	0.0	chr2	121804346	121804382	(120389147)	+	MamTip2	DNA/hAT-Tip100	186	223	(82)	2089388
6119	8.5	3.5	2.6	chr2	125276589	125277825	(116915704)	C	SVA_B	Retroposon/SVA	(13)	1370	1	2094409
16	0.0	0.0	0.0	chr2	127294420	127294437	(114899092)	+	(GA)n	Simple_repeat	1	18	(0)	2097200
2208	13.3	0.0	1.0	chr2	127294494	127294786	(114898743)	+	AluSz	SINE/Alu	1	290	(22)	2097201
10683	2.9	0.4	12.9	chr2	127352677	127354259	(114839270)	+	SVA_D	Retroposon/SVA	4	1386	(0)	2097295
1871	16.1	0.3	1.2	chr2	128207820	128208158	(113985371)	C	MER1B	DNA/hAT-Charlie	(0)	339	4	2098864
325	22.0	1.1	9.9	chr2	128208159	128208206	(113985323)	C	MLT1A	LTR/ERVL-MaLR	(53)	312	271	2098863
1896	18.4	5.2	58.5	chr2	128208189	128208913	(113984616)	+	SVA_F	Retroposon/SVA	380	862	(522)	2098865
1855	19.6	5.0	2.3	chr2	128208914	128209714	(113983815)	+	SVA_F	Retroposon/SVA	421	857	(518)	2098866
16	20.9	0.0	7.8	chr2	128209790	128209853	(113983676)	+	A-rich	Low_complexity	1	64	(0)	2098867
10348	4.8	3.8	0.1	chr2	129833026	129834328	(112359201)	+	SVA_B	Retroposon/SVA	31	1383	(0)	2100942
4915	9.2	3.1	1.3	chr2	132220385	132221314	(109972215)	+	SVA_D	Retroposon/SVA	50	866	(520)	2104280
1064	30.6	3.8	4.7	chr2	133344533	133344978	(108848551)	C	L2a	LINE/L2	(658)	2761	2320	2105808
373	15.6	6.1	1.3	chr2	133345173	133345250	(108848279)	+	SVA_E	Retroposon/SVA	441	522	(860)	2105811
569	12.8	0.0	0.0	chr2	133464235	133464320	(108729209)	C	Tigger7	DNA/TcMar-Tigger	(2059)	432	347	2105974
6831	7.3	1.9	2.3	chr2	134063421	134064977	(108128552)	+	SVA_D	Retroposon/SVA	32	1382	(4)	2106872
11302	3.3	0.1	10.7	chr2	134967859	134969408	(107224121)	C	SVA_D	Retroposon/SVA	(0)	1386	1	2108210
4763	7.1	2.6	1.5	chr2	135177139	135178156	(107015373)	C	MER11A	LTR/ERVK	(0)	1266	2	2108572
15	18.3	0.0	2.6	chr2	135531567	135531621	(106661908)	+	(CCCGC)n	Simple_repeat	1	53	(0)	2109150
17	15.5	4.7	0.0	chr2	135531859	135531901	(106661628)	+	(GGCTGC)n	Simple_repeat	1	45	(0)	2109151
7294	3.7	2.8	0.1	chr2	139912644	139913516	(102280013)	C	MER11D	LTR/ERVK	(0)	897	1	2115452
5974	7.5	3.2	2.8	chr2	152159709	152161514	(90032015)	+	SVA_D	Retroposon/SVA	9	1386	(0)	2131966
13	14.7	3.3	0.0	chr2	157628876	157628905	(84564624)	+	G-rich	Low_complexity	1	31	(0)	2138967
9476	5.1	0.8	14.7	chr2	158309921	158311529	(83882000)	C	SVA_B	Retroposon/SVA	(0)	1383	1	2139995
2074	12.1	2.3	0.3	chr2	158957787	158958084	(83235445)	C	AluJb	SINE/Alu	(7)	305	2	2140889
448	13.6	2.0	2.1	chr2	158958099	158958195	(83235334)	+	SVA_F	Retroposon/SVA	413	552	(823)	2140890
21	16.8	1.4	7.1	chr2	159798202	159798270	(82395259)	+	G-rich	Low_complexity	1	70	(0)	2142174
1869	21.8	6.2	1.7	chr2	159798406	159798945	(82394584)	C	L1MC4a	LINE/L1	(0)	7882	7317	2142175
6051	8.2	2.4	4.0	chr2	160438259	160440064	(81753465)	C	SVA_D	Retroposon/SVA	(0)	1386	32	2143073
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
19	9.8	0.0	2.9	chr2	166376052	166376086	(75817443)	+	(CCCT)n	Simple_repeat	1	35	(0)	2150940
24	6.6	0.0	0.0	chr2	166376221	166376252	(75817277)	+	(GT)n	Simple_repeat	1	32	(0)	2150941
5770	10.2	2.2	50.1	chr2	167562650	167564687	(74628842)	C	SVA_D	Retroposon/SVA	(2)	1384	222	2152376
5298	7.6	2.6	7.3	chr2	169326183	169327431	(72866098)	+	SVA_D	Retroposon/SVA	1	866	(520)	2154779
4901	9.4	1.9	2.7	chr2	169505004	169506468	(72687061)	+	SVA_D	Retroposon/SVA	79	1036	(350)	2155064
9303	4.1	0.4	10.2	chr2	169855350	169856825	(72336704)	C	SVA_B	Retroposon/SVA	(0)	1383	53	2155747
8179	3.9	0.0	0.1	chr2	170615660	170616557	(71576972)	C	MER11D	LTR/ERVK	(0)	897	1	2156932
7555	3.6	0.5	3.0	chr2	170618536	170619450	(71574079)	C	MER11D	LTR/ERVK	(5)	892	1	2156933
51	25.7	3.3	3.6	chr2	170770826	170771037	(71422492)	+	(GCCCCC)n	Simple_repeat	1	219	(0)	2157212
3985	12.9	8.2	1.4	chr2	171386665	171387393	(70806136)	+	LTR1	LTR/ERV1	1	783	(0)	2158357
10414	3.6	0.9	7.9	chr2	171774049	171775537	(70417992)	+	SVA_C	Retroposon/SVA	2	1384	(0)	2159004
6840	5.4	1.3	8.3	chr2	171899247	171900972	(70292557)	+	SVA_D	Retroposon/SVA	32	1385	(1)	2159227
16	0.0	0.0	0.0	chr2	172428546	172428562	(69764967)	+	(A)n	Simple_repeat	1	17	(0)	2160152
7399	4.7	0.8	29.3	chr2	172537160	172539055	(69654474)	+	SVA_F	Retroposon/SVA	2	1352	(23)	2160300
16	23.5	5.5	2.6	chr2	173965785	173965857	(68227672)	+	(GCTGCC)n	Simple_repeat	1	77	(0)	2162466
14	16.2	0.0	0.0	chr2	173965834	173965861	(68227668)	+	(GCT)n	Simple_repeat	1	28	(0)	2162467
14	15.0	5.4	0.0	chr2	174248642	174248678	(67944851)	+	(GCCCC)n	Simple_repeat	1	39	(0)	2162948
9604	3.5	0.2	16.9	chr2	175107527	175109188	(67084341)	+	SVA_C	Retroposon/SVA	1	1384	(0)	2164312
20	16.4	5.9	4.2	chr2	176106847	176106915	(66086614)	+	(TCC)n	Simple_repeat	1	70	(0)	2165664
15	11.9	0.0	9.1	chr2	176106942	176106985	(66086544)	+	(GCGG)n	Simple_repeat	1	44	(0)	2165665
13	21.9	0.0	7.3	chr2	176106994	176107048	(66086481)	+	(GCGGCCA)n	Simple_repeat	1	55	(0)	2165666
12	17.1	4.9	2.3	chr2	176188731	176188771	(66004758)	+	(TCCGGC)n	Simple_repeat	1	43	(0)	2165742
213	26.0	2.7	6.4	chr2	178523566	178523643	(63669886)	C	MIR3	SINE/MIR	(7)	201	127	2169226
1140	18.4	6.7	9.6	chr2	178523762	178524116	(63669413)	+	LTR16A1	LTR/ERVL	112	455	(1)	2169227
6243	11.0	4.1	46.8	chr2	183791344	183793322	(58400207)	C	SVA_A	Retroposon/SVA	(13)	1374	81	2175812
2058	15.5	1.1	1.1	chr2	186374734	186375098	(55818431)	+	MER47A	DNA/TcMar-Tigger	2	366	(0)	2178961
7790	2.6	0.3	0.1	chr2	186375135	186376029	(55817500)	+	MER11D	LTR/ERVK	1	897	(0)	2178962
8765	13.5	7.5	1.4	chr2	186962105	186963583	(55229946)	+	LTR12C	LTR/ERV1	3	1579	(0)	2179798
5373	9.2	3.8	5.4	chr2	187555926	187556933	(54636596)	+	SVA_D	Retroposon/SVA	53	866	(520)	2180525
7526	7.3	0.0	27.7	chr2	187636288	187638204	(54555325)	C	SVA_A	Retroposon/SVA	(1)	1386	1	2180629
10534	2.9	0.4	10.9	chr2	190430205	190431750	(51761779)	C	SVA_D	Retroposon/SVA	(0)	1386	3	2184362
744	30.8	10.2	11.4	chr2	197168617	197169522	(45024007)	+	L2b	LINE/L2	2484	3375	(0)	2193500
5830	7.3	2.1	5.0	chr2	197695454	197697458	(44496071)	C	SVA_D	Retroposon/SVA	(23)	1363	1	2194496
6497	8.9	3.5	33.1	chr2	197922007	197924136	(44269393)	C	SVA_F	Retroposon/SVA	(0)	1375	57	2194790
34	6.5	0.0	0.0	chr2	202033744	202033808	(40159721)	+	(GGGAG)n	Simple_repeat	1	65	(0)	2201078
28	0.0	0.0	3.2	chr2	202033874	202033904	(40159625)	+	(CGG)n	Simple_repeat	1	31	(0)	2201079
16	22.1	8.0	1.2	chr2	202376124	202376198	(39817331)	+	(CGGCGC)n	Simple_repeat	1	81	(0)	2201854
22	3.5	0.0	0.0	chr2	202376172	202376200	(39817329)	+	(CCG)n	Simple_repeat	1	29	(0)	2201855
18	29.1	1.4	2.7	chr2	202376240	202376327	(39817202)	+	(GGC)n	Simple_repeat	1	86	(0)	2201856
14	27.5	2.5	4.8	chr2	202376396	202376476	(39817053)	+	(CGCCGCC)n	Simple_repeat	1	83	(0)	2201857
39	0.0	0.0	0.0	chr2	202376512	202376547	(39816982)	+	(GGC)n	Simple_repeat	1	36	(0)	2201858
5771	10.2	6.2	3.5	chr2	202439749	202440764	(39752765)	C	SVA_B	Retroposon/SVA	(0)	1383	339	2202014
5673	9.1	3.0	6.7	chr2	202534282	202536111	(39657418)	C	SVA_F	Retroposon/SVA	(23)	1361	9	2202223
4153	9.8	5.6	3.5	chr2	203066340	203067121	(39126408)	C	SVA_A	Retroposon/SVA	(263)	1124	436	2203231
9510	2.8	0.4	12.6	chr2	203371930	203373472	(38820057)	C	SVA_D	Retroposon/SVA	(2)	1384	32	2203886
7148	4.2	2.9	0.0	chr2	208482219	208483089	(33710440)	C	MER11D	LTR/ERVK	(0)	897	1	2211927
16	6.3	5.7	2.7	chr2	216081863	216081897	(26111632)	+	(CCCGG)n	Simple_repeat	1	37	(0)	2222151
16	19.6	0.0	0.0	chr2	216082042	216082071	(26111458)	+	A-rich	Low_complexity	1	30	(0)	2222152
15	19.9	0.0	0.0	chr2	216692009	216692037	(25501492)	+	(CT)n	Simple_repeat	1	29	(0)	2223255
49	0.0	0.0	2.2	chr2	216692358	216692403	(25501126)	+	(GT)n	Simple_repeat	1	46	(0)	2223256
16	16.0	0.0	2.7	chr2	218865990	218866026	(23327503)	+	G-rich	Low_complexity	1	37	(0)	2226945
12	13.8	5.7	2.7	chr2	218866046	218866080	(23327449)	+	(GACAG)n	Simple_repeat	1	37	(0)	2226946
13	16.2	4.4	4.3	chr2	219160852	219160896	(23032633)	+	G-rich	Low_complexity	1	47	(0)	2227435
184	25.0	13.6	8.4	chr2	219160993	219161158	(23032371)	+	MIR3	SINE/MIR	10	185	(23)	2227436
299	34.7	7.6	3.2	chr2	219161197	219161634	(23031895)	+	L2c	LINE/L2	2913	3371	(16)	2227437
460	26.1	4.7	1.4	chr2	219497481	219497624	(22695905)	C	MIRc	SINE/MIR	(45)	223	75	2228033
17	22.7	3.5	1.7	chr2	219497866	219497923	(22695606)	+	G-rich	Low_complexity	1	60	(0)	2228034
10057	5.0	0.8	9.2	chr2	219750537	219752021	(22441508)	C	SVA_B	Retroposon/SVA	(5)	1378	19	2228433
1733	19.0	1.1	0.0	chr2	221371533	221371811	(20821718)	C	AluJo	SINE/Alu	(30)	282	1	2230977
6990	5.9	2.6	1.1	chr2	228714589	228715466	(13478063)	C	MER11D	LTR/ERVK	(0)	897	7	2242484
5775	9.2	4.1	3.2	chr2	229742162	229743329	(12450200)	+	SVA_D	Retroposon/SVA	8	866	(520)	2244026
654	34.0	0.9	0.0	chr2	234178681	234178889	(8014640)	+	LTR33	LTR/ERVL	28	238	(277)	2251512
505	27.9	4.2	0.0	chr2	234178937	234179072	(8014457)	+	LTR33	LTR/ERVL	355	496	(19)	2251512
305	34.3	6.3	3.2	chr2	238061407	238061683	(4131846)	C	L2	LINE/L2	(438)	2981	2696	2257311
384	23.9	4.1	1.9	chr2	238125960	238127216	(4066313)	+	(TCTGTG)n	Simple_repeat	1	1309	(0)	2257395
989	28.4	2.9	0.7	chr2	241993248	241993552	(199977)	C	MLT1B	LTR/ERVL-MaLR	(71)	319	8	2261935
14	35.9	0.0	0.0	chr20	653096	653162	(63791005)	+	(GCCCG)n	Simple_repeat	1	67	(0)	2263435
13	14.8	4.0	10.4	chr20	653483	653556	(63790611)	+	G-rich	Low_complexity	1	77	(0)	2263436
16	14.2	0.0	0.0	chr20	653539	653569	(63790598)	+	(GCGGGG)n	Simple_repeat	1	31	(0)	2263437
945	25.6	1.7	1.1	chr20	653689	653915	(63790252)	C	MIR	SINE/MIR	(32)	230	3	2263438
325	32.6	16.7	4.7	chr20	2172446	2172542	(62271625)	+	L2b	LINE/L2	3239	3354	(21)	2266401
12	16.6	4.5	4.3	chr20	2693353	2693396	(61750771)	+	(CCGC)n	Simple_repeat	1	46	(0)	2267442
239	36.3	16.0	5.8	chr20	2841327	2841763	(61602404)	+	L2b	LINE/L2	2798	3284	(91)	2267677
3897	10.6	12.1	46.0	chr20	3124216	3125132	(61319035)	+	SVA_A	Retroposon/SVA	30	872	(515)	2268251
6447	8.6	3.9	34.5	chr20	3125133	3126524	(61317643)	+	SVA_A	Retroposon/SVA	421	1387	(0)	2268252
1276	16.7	2.1	3.3	chr20	5118301	5118545	(59325622)	+	AluJr4	SINE/Alu	55	296	(16)	2272053
7423	5.6	0.2	27.9	chr20	5452297	5454164	(58990003)	+	SVA_A	Retroposon/SVA	28	1377	(10)	2272590
8773	7.3	0.6	8.5	chr20	9384800	9386288	(55057879)	C	SVA_A	Retroposon/SVA	(0)	1387	17	2278831
749	18.3	1.5	1.0	chr20	13703191	13703389	(50740778)	+	L1MD	LINE/L1	3154	3353	(2793)	2285271
376	12.2	0.0	2.6	chr20	13703398	13703473	(50740694)	+	SVA_F	Retroposon/SVA	440	513	(862)	2285272
4095	23.7	4.8	6.2	chr20	13703579	13703763	(50740404)	+	L1MD	LINE/L1	3356	3519	(2627)	2285271
7050	7.5	1.5	1.8	chr20	13760174	13761396	(50682771)	+	SVA_D	Retroposon/SVA	421	1385	(1)	2285361
213	20.4	0.0	0.0	chr20	14054108	14054151	(50390016)	+	L2c	LINE/L2	3245	3288	(99)	2285868
329	24.6	2.7	4.7	chr20	18058540	18058688	(46385479)	C	MamRep1879	DNA/hAT-Tip100?	(58)	158	13	2292019
10384	4.3	0.6	9.1	chr20	18193880	18195391	(46248776)	+	SVA_D	Retroposon/SVA	3	1385	(1)	2292291
9394	2.8	0.0	25.3	chr20	19677709	19679559	(44764608)	C	SVA_D	Retroposon/SVA	(3)	1383	1	2294470
285	16.3	0.0	0.0	chr20	20921136	20921178	(43522989)	C	LTR16C	LTR/ERVL	(446)	43	1	2296310
6402	7.5	2.8	4.9	chr20	24625385	24627119	(39817048)	C	SVA_D	Retroposon/SVA	(2)	1384	8	2301135
411	24.8	0.0	9.9	chr20	29411577	29411728	(35032439)	+	LSAU	Satellite	2	138	(360)	2304090
2860	28.3	4.9	5.5	chr20	30283322	30285229	(34158938)	+	SST1	Satellite/centr	1	1895	(14)	2304820
6473	7.3	1.6	5.7	chr20	30290998	30292703	(34151464)	C	SVA_D	Retroposon/SVA	(16)	1370	1	2304837
1159	13.1	0.5	0.0	chr20	30519545	30520660	(33923507)	C	ACRO1	Satellite/acro	(55)	1121	1	2305115
4636	22.9	5.1	7.7	chr20	30625824	30628238	(33815929)	C	L1PA13	LINE/L1	(3745)	3021	486	2305284
10694	3.8	0.1	16.6	chr20	30846336	30847994	(33596173)	C	SVA_D	Retroposon/SVA	(0)	1386	1	2305510
1030	9.4	0.8	0.0	chr20	30866424	30866600	(33577567)	+	BSR/Beta	Satellite	1	178	(0)	2305529
6212	8.7	2.0	17.0	chr20	31469446	31472453	(32971714)	C	SVA_D	Retroposon/SVA	(0)	1386	1	2306034
8432	4.2	0.2	31.3	chr20	32121204	32123212	(32320955)	C	SVA_D	Retroposon/SVA	(2)	1384	1	2307715
5668	7.2	2.2	1.3	chr20	33388608	33389882	(31054285)	+	SVA_C	Retroposon/SVA	8	1045	(339)	2310589
6304	7.9	1.8	4.0	chr20	33698513	33700714	(30743453)	+	SVA_D	Retroposon/SVA	53	1383	(3)	2311374
9526	7.4	0.6	13.7	chr20	33700738	33702334	(30741833)	+	SVA_D	Retroposon/SVA	1	1386	(0)	2311376
8885	3.8	0.7	26.3	chr20	34131811	34133679	(30310488)	+	SVA_D	Retroposon/SVA	1	1386	(0)	2312376
333	25.3	1.2	0.0	chr20	34303623	34303701	(30140466)	+	MIRb	SINE/MIR	106	185	(83)	2312723
1908	11.5	0.3	2.0	chr20	34303712	34304015	(30140152)	+	AluJr	SINE/Alu	1	299	(13)	2312724
10548	3.6	0.4	10.3	chr20	34474164	34475701	(29968466)	C	SVA_D	Retroposon/SVA	(1)	1385	1	2313168
6747	7.2	1.9	6.9	chr20	35152902	35155074	(29289093)	+	SVA_F	Retroposon/SVA	57	1375	(0)	2314652
15	7.8	3.7	0.0	chr20	36835845	36835871	(27608296)	+	(CCG)n	Simple_repeat	1	28	(0)	2318572
8921	2.3	0.1	29.9	chr20	37125176	37127141	(27317026)	+	SVA_D	Retroposon/SVA	1	1377	(9)	2319287
7708	5.2	0.7	17.0	chr20	37150247	37151650	(27292517)	+	SVA_B	Retroposon/SVA	1	1173	(210)	2319361
8777	1.9	1.4	29.6	chr20	38460665	38462605	(25981562)	C	SVA_D	Retroposon/SVA	(0)	1386	1	2322219
9795	2.5	0.3	14.4	chr20	43606592	43608196	(20835971)	C	SVA_D	Retroposon/SVA	(6)	1380	3	2331534
226	32.5	4.7	3.9	chr20	43657193	43657320	(20786847)	C	L2b	LINE/L2	(97)	3278	3150	2331665
12	9.7	0.0	0.0	chr20	45629717	45629738	(18814429)	+	(TCCT)n	Simple_repeat	1	22	(0)	2336003
10137	2.7	0.1	23.6	chr20	45645020	45646831	(18797336)	C	SVA_D	Retroposon/SVA	(0)	1386	1	2336021
776	16.0	0.0	3.4	chr20	47251725	47251873	(17192294)	+	SVA_F	Retroposon/SVA	523	666	(709)	2339576
16	20.3	0.0	0.0	chr20	47251983	47252012	(17192155)	+	A-rich	Low_complexity	1	30	(0)	2339577
2263	10.3	1.0	0.0	chr20	47252014	47252314	(17191853)	+	AluSx1	SINE/Alu	2	305	(7)	2339578
760	16.1	8.6	11.3	chr20	47361355	47361557	(17082610)	+	MER20	DNA/hAT-Charlie	19	215	(4)	2339815
319	22.9	22.4	0.0	chr20	47501517	47501634	(16942533)	+	MIR	SINE/MIR	111	262	(0)	2340295
20	19.0	0.0	6.6	chr20	47501914	47501974	(16942193)	+	(GCG)n	Simple_repeat	1	61	(0)	2340296
22	23.3	1.7	0.0	chr20	49188384	49188443	(15255724)	+	(GCCCCC)n	Simple_repeat	1	61	(0)	2343772
28	14.9	5.5	5.2	chr20	49188641	49188731	(15255436)	+	(CCTT)n	Simple_repeat	1	96	(0)	2343773
608	27.1	5.9	0.6	chr20	49188743	49188902	(15255265)	C	L2a	LINE/L2	(1)	3425	3257	2343774
6843	10.0	2.8	6.0	chr20	58413146	58415106	(6029061)	C	SVA_F	Retroposon/SVA	(0)	1375	70	2362897
2229	10.4	0.0	1.3	chr20	62301637	62301943	(2142224)	C	AluSz	SINE/Alu	(6)	306	4	2368406
302	24.6	1.4	7.8	chr20	62383243	62383307	(2060860)	C	L1MA10	LINE/L1	(15)	6319	6260	2368488
81	21.6	1.4	3.2	chr20	63653429	63653646	(790521)	+	G-rich	Low_complexity	1	221	(0)	2369848
28	0.0	0.0	0.0	chr20	64255724	64255749	(188418)	+	(GGC)n	Simple_repeat	1	26	(0)	2370630
17	0.0	0.0	0.0	chr20	64255876	64255896	(188271)	+	(GCC)n	Simple_repeat	1	21	(0)	2370631
2508	17.7	4.2	1.4	chr20	64285514	64286699	(157468)	+	TAR1	Satellite/telo	1	1219	(1436)	2370665
605	6.4	0.9	3.6	chr20	64286700	64287633	(156534)	+	(AGGGTT)n	Simple_repeat	1	942	(0)	2370666
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
37669	0.4	1.2	0.8	chr21	8397807	8401980	(38308003)	+	LSU-rRNA_Hsa	rRNA	878	5034	(1)	2373509
312	38.2	6.5	3.6	chr21	8419786	8420171	(38289812)	C	HAL1	LINE/L1	(1230)	1277	880	2373573
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
12	20.8	0.0	2.9	chr21	8434102	8434136	(38275847)	+	(CCG)n	Simple_repeat	1	35	(0)	2373611
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
74	12.3	0.0	0.0	chr21	9247783	9247915	(37462068)	+	(TGGAA)n	Simple_repeat	1	133	(0)	2374340
378	16.1	3.0	0.2	chr21	9247917	9247990	(37461993)	+	AluJb	SINE/Alu	216	290	(12)	2374341
1562	29.8	5.6	6.5	chr21	9817901	9819192	(36890791)	C	SST1	Satellite/centr	(1)	1562	284	2374896
20	28.0	1.7	0.0	chr21	9819212	9819271	(36890712)	+	GA-rich	Low_complexity	1	61	(0)	2374897
1996	29.3	5.0	5.8	chr21	9819321	9820600	(36889383)	C	SST1	Satellite/centr	(11)	1552	284	2374899
1750	28.6	6.0	7.2	chr21	9822132	9823427	(36886556)	C	SST1	Satellite/centr	(1)	1562	284	2374905
3733	5.1	0.8	0.0	chr21	10269869	10270342	(36439641)	+	HSATI	Satellite	90	567	(10)	2375347
1732	14.4	0.0	5.1	chr21	10270343	10270634	(36439349)	+	AluSc8	SINE/Alu	13	289	(22)	2375348
398	8.6	0.2	0.0	chr21	10426491	10427038	(36282945)	+	(GTGGTG)n	Simple_repeat	1	549	(0)	2375540
404	28.3	11.0	2.7	chr21	10427070	10427382	(36282601)	C	L2c	LINE/L2	(213)	3174	2827	2375541
25	15.4	0.0	0.0	chr21	10427515	10427557	(36282426)	+	(CA)n	Simple_repeat	1	43	(0)	2375542
1235	12.2	6.4	4.1	chr21	13378920	13379209	(33330774)	+	SVA_F	Retroposon/SVA	442	738	(637)	2376376
1850	11.9	8.0	0.5	chr21	13379213	13379616	(33330367)	+	SVA_F	Retroposon/SVA	421	857	(518)	2376377
5700	14.2	5.1	24.1	chr21	13379624	13381691	(33328292)	+	SVA_A	Retroposon/SVA	421	1385	(2)	2376377
6063	11.6	5.8	62.6	chr21	13934253	13936999	(32772984)	C	SVA_A	Retroposon/SVA	(3)	1384	347	2377147
5023	3.4	1.6	2.8	chr21	15672194	15672850	(31037133)	C	SVA_A	Retroposon/SVA	(0)	1387	406	2379443
538	24.1	12.9	3.4	chr21	15672838	15673103	(31036880)	+	Helitron1Nb_Mam	RC/Helitron	805	1099	(17)	2379442
10346	4.7	0.9	6.1	chr21	25694976	25696434	(21013549)	C	SVA_C	Retroposon/SVA	(0)	1384	3	2392887
4816	3.3	0.5	2.7	chr21	29392191	29392813	(17317170)	C	SVA_A	Retroposon/SVA	(0)	1387	779	2398232
7277	7.7	1.3	0.4	chr21	29392814	29393884	(17316099)	C	L1PA10	LINE/L1	(816)	5330	4250	2398231
2413	13.4	4.3	6.8	chr21	33069311	33069806	(13640177)	+	L1MB2	LINE/L1	5689	6171	(0)	2404251
588	36.0	6.9	3.6	chr21	37700478	37700726	(9009257)	C	L2b	LINE/L2	(560)	2859	2611	2411998
631	22.1	8.5	0.6	chr21	37700727	37700899	(9009084)	+	MER91B	DNA/hAT-Tip100	1	188	(2)	2411999
588	36.0	6.9	3.6	chr21	37700900	37701317	(9008666)	C	L2b	LINE/L2	(809)	2610	2168	2411998
9536	4.9	1.7	14.9	chr21	39156597	39158198	(7551785)	+	SVA_D	Retroposon/SVA	1	1386	(0)	2414094
9491	3.5	0.3	7.6	chr21	43821751	43823046	(2886937)	+	SVA_B	Retroposon/SVA	53	1383	(0)	2420859
8346	5.2	12.7	0.2	chr21	43896970	43898155	(2811828)	C	SVA_A	Retroposon/SVA	(13)	1374	19	2421008
8044	2.0	0.4	27.7	chr21	44824049	44825934	(1884049)	+	SVA_D	Retroposon/SVA	1	1368	(18)	2422199
20	22.7	0.0	3.3	chr21	44940122	44940181	(1769802)	+	(CCGGCC)n	Simple_repeat	1	60	(0)	2422350
1832	21.2	11.5	4.6	chr21	44940543	44941444	(1768539)	C	L1MB8	LINE/L1	(4805)	2062	1214	2422351
15	28.8	0.0	5.4	chr21	45059231	45059304	(1650679)	+	(CCTCC)n	Simple_repeat	1	74	(0)	2422469
276	28.1	9.8	9.4	chr21	45059344	45059587	(1650396)	+	L2b	LINE/L2	3014	3258	(117)	2422470
2364	7.6	0.0	3.0	chr21	45059626	45059926	(1650057)	C	AluY	SINE/Alu	(19)	292	1	2422471
4462	9.1	4.2	3.2	chr21	46448533	46449316	(260667)	C	MER11A	LTR/ERVK	(0)	1266	316	2423965
1989	7.6	0.0	0.8	chr21	46449317	46449566	(260417)	C	AluY	SINE/Alu	(1)	310	63	2423966
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
530	23.4	6.1	1.9	chr22	11572555	11572711	(39245757)	+	MIRb	SINE/MIR	33	196	(72)	2425189
1118	10.7	0.3	0.1	chr22	11814559	11816405	(39002063)	C	ACRO1	Satellite/acro	(55)	1851	1	2425389
194	23.1	0.0	1.9	chr22	11817844	11817896	(39000572)	C	MER5A	DNA/hAT-Charlie	(20)	169	118	2425392
590	21.9	0.2	0.0	chr22	11818875	11819136	(38999332)	+	ACRO1	Satellite/acro	1	262	(0)	2425395
1249	21.0	6.5	1.2	chr22	11896731	11897053	(38921415)	C	L1MB8	LINE/L1	(5)	6173	5833	2425507
2301	14.0	7.0	0.5	chr22	11897054	11897465	(38921003)	C	MER61C	LTR/ERV1	(0)	428	4	2425508
1124	22.8	3.2	0.8	chr22	11900617	11900862	(38917606)	C	AluJr	SINE/Alu	(48)	264	13	2425511
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
6890	5.8	2.0	1.8	chr22	17560648	17562053	(33256415)	+	SVA_D	Retroposon/SVA	47	1386	(0)	2429245
9371	3.8	2.3	10.1	chr22	18040935	18042416	(32776052)	C	SVA_D	Retroposon/SVA	(23)	1363	1	2430110
1944	8.3	10.1	0.0	chr22	18149157	18149422	(32669046)	C	AluSq2	SINE/Alu	(13)	300	5	2430307
430	21.6	0.0	10.2	chr22	18149423	18149453	(32669015)	+	MER47C	DNA/TcMar-Tigger	77	97	(0)	2430306
2091	8.8	6.9	0.0	chr22	18149659	18149942	(32668526)	+	AluSx	SINE/Alu	1	305	(7)	2430308
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4274	7.6	2.2	4.8	chr22	18900036	18900952	(31917516)	C	SVA_D	Retroposon/SVA	(339)	1047	328	2431183
5752	8.6	2.3	3.0	chr22	19083682	19085107	(31733361)	+	SVA_D	Retroposon/SVA	1	1047	(339)	2431404
17	11.7	5.8	5.5	chr22	19447536	19447587	(31370881)	+	(GGC)n	Simple_repeat	1	55	(0)	2432024
7936	3.0	0.1	0.0	chr22	21071693	21072588	(29745880)	+	MER11D	LTR/ERVK	1	897	(0)	2434501
293	35.0	11.2	5.9	chr22	21666391	21666528	(29151940)	+	L2	LINE/L2	1672	1813	(1606)	2435647
10224	5.4	1.0	0.7	chr22	21676369	21677721	(29140747)	C	SVA_C	Retroposon/SVA	(7)	1377	21	2435673
20	8.8	0.0	5.0	chr22	21736077	21736116	(29082352)	+	(GGGGC)n	Simple_repeat	1	40	(0)	2435787
9489	5.9	1.6	7.9	chr22	21847028	21848451	(28970017)	+	SVA_B	Retroposon/SVA	52	1383	(0)	2436037
7113	6.7	1.5	3.9	chr22	21882943	21884800	(28933668)	C	SVA_D	Retroposon/SVA	(5)	1381	27	2436133
7280	7.9	1.8	1.8	chr22	22441382	22442609	(28375859)	+	SVA_C	Retroposon/SVA	117	1364	(23)	2436858
273	29.3	5.3	1.6	chr22	23849107	23849274	(26969194)	C	MIRb	SINE/MIR	(89)	179	1	2439069
6918	7.7	3.3	1.9	chr22	23936432	23937909	(26880559)	+	SVA_D	Retroposon/SVA	20	1385	(1)	2439243
57	3.6	0.0	0.0	chr22	24011077	24011134	(26807334)	+	(AC)n	Simple_repeat	1	58	(0)	2439358
26	18.8	2.0	0.0	chr22	24011135	24011185	(26807283)	+	(GC)n	Simple_repeat	1	52	(0)	2439359
10452	2.9	0.3	10.7	chr22	24064516	24066060	(26752408)	C	SVA_D	Retroposon/SVA	(0)	1386	3	2439453
278	32.6	9.7	2.6	chr22	24951881	24952060	(25866408)	+	L2a	LINE/L2	3205	3426	(0)	2441075
36	2.9	0.0	0.0	chr22	28020779	28020813	(22797655)	+	(AC)n	Simple_repeat	1	35	(0)	2447874
184	30.8	21.6	0.0	chr22	29245792	29245882	(21572586)	C	MIR3	SINE/MIR	(60)	148	33	2450195
579	29.8	16.7	3.1	chr22	29245894	29246575	(21571893)	C	L2b	LINE/L2	(11)	3364	2557	2450196
13	19.2	6.1	1.9	chr22	29553633	29553681	(21264787)	+	(CCCATCT)n	Simple_repeat	1	52	(0)	2450825
242	25.1	9.8	1.5	chr22	29553838	29553941	(21264527)	+	L2a	LINE/L2	3260	3423	(3)	2450826
453	24.8	8.7	0.7	chr22	30356405	30356542	(20461926)	C	MER5A1	DNA/hAT-Charlie	(0)	166	17	2452430
10047	5.3	0.2	12.6	chr22	31183383	31184960	(19633508)	C	SVA_B	Retroposon/SVA	(0)	1383	1	2454210
2583	9.9	0.0	0.0	chr22	33122346	33122658	(17695810)	C	AluSq2	SINE/Alu	(0)	313	1	2458441
6832	15.2	4.5	2.9	chr22	33122659	33123609	(17694859)	C	MER66-int	LTR/ERV1	(4512)	2164	1210	2458440
5368	3.5	1.6	0.0	chr22	36203145	36203924	(14614544)	C	MER11D	LTR/ERVK	(0)	897	1	2464564
39	4.5	2.5	6.2	chr22	36703239	36703317	(14115151)	+	(GCG)n	Simple_repeat	1	81	(0)	2465662
19	26.7	1.6	3.1	chr22	38202654	38202725	(12615743)	+	(GT)n	Simple_repeat	1	70	(0)	2469024
10109	4.1	3.4	1.3	chr22	38409401	38410725	(12407743)	C	SVA_B	Retroposon/SVA	(2)	1381	28	2469422
248	21.5	7.9	2.1	chr22	38448668	38448762	(12369706)	+	MIRc	SINE/MIR	38	138	(130)	2469519
2293	8.9	1.0	2.5	chr22	38802501	38802816	(12015652)	+	AluSz	SINE/Alu	2	312	(0)	2470299
638	14.7	0.0	2.9	chr22	38981116	38981255	(11837213)	+	SVA_F	Retroposon/SVA	454	589	(786)	2470648
18	12.6	0.0	0.0	chr22	38981378	38981404	(11837064)	+	(A)n	Simple_repeat	1	27	(0)	2470649
2386	16.8	8.8	11.9	chr22	39143280	39143938	(11674530)	+	Tigger3b	DNA/TcMar-Tigger	576	1231	(0)	2470983
18	28.3	4.6	1.1	chr22	39456974	39457060	(11361408)	+	(CGCA)n	Simple_repeat	1	91	(0)	2471690
2270	18.1	7.0	8.2	chr22	40747418	40747847	(10070621)	C	MER21B	LTR/ERVL	(110)	758	317	2474262
2441	8.2	0.3	0.0	chr22	40747848	40748150	(10070318)	C	AluSp	SINE/Alu	(9)	304	1	2474264
219	32.2	4.8	2.5	chr22	41544685	41544805	(9273663)	+	L2	LINE/L2	2721	2844	(575)	2476155
479	27.8	3.9	0.0	chr22	41544849	41545021	(9273447)	+	L1ME2	LINE/L1	5985	6164	(0)	2476156
771	23.8	3.6	0.0	chr22	41545079	41545238	(9273230)	+	AluJo	SINE/Alu	137	302	(10)	2476157
9648	2.8	2.8	20.3	chr22	41630493	41632184	(9186284)	C	SVA_D	Retroposon/SVA	(0)	1386	1	2476375
7807	3.6	0.6	0.0	chr22	42498284	42499175	(8319293)	C	MER11D	LTR/ERVK	(0)	897	1	2478217
839	14.8	0.7	4.9	chr22	42499176	42499288	(8319180)	C	AluSz	SINE/Alu	(199)	113	1	2478216
44	0.0	0.0	0.0	chr22	42499306	42499343	(8319125)	+	(AC)n	Simple_repeat	1	38	(0)	2478218
7155	4.8	1.2	10.0	chr22	42607120	42608264	(8210204)	+	SVA_B	Retroposon/SVA	34	1076	(307)	2478487
2274	8.5	2.0	0.3	chr22	42857684	42857978	(7960490)	C	AluSx	SINE/Alu	(11)	301	2	2479093
2153	12.5	1.0	0.0	chr22	43007212	43007515	(7810953)	C	AluSz6	SINE/Alu	(5)	307	1	2479355
308	32.9	8.1	4.2	chr22	43150931	43151073	(7667395)	C	MIRb	SINE/MIR	(27)	241	93	2479717
247	29.3	1.2	2.4	chr22	43151206	43151289	(7667179)	C	MIRb	SINE/MIR	(99)	169	87	2479718
29	15.4	5.4	1.3	chr22	43151471	43151544	(7666924)	+	(GGCGG)n	Simple_repeat	1	78	(0)	2479719
2366	6.6	1.6	0.3	chr22	43196699	43196999	(7621469)	+	AluY	SINE/Alu	1	305	(6)	2479810
12	14.7	3.7	8.9	chr22	43923847	43923900	(6894568)	+	(GACCC)n	Simple_repeat	1	56	(0)	2481024
15	3.8	7.4	0.0	chr22	43923885	43923911	(6894557)	+	(CCG)n	Simple_repeat	1	29	(0)	2481025
420	24.4	0.0	0.2	chr22	44628831	44628941	(6189527)	+	L1MC2	LINE/L1	5722	5830	(1955)	2482310
1094	16.7	0.0	3.8	chr22	44628944	44629155	(6189313)	+	SVA_F	Retroposon/SVA	438	641	(734)	2482311
91	8.0	2.2	0.0	chr22	44629248	44629382	(6189086)	+	(AGAA)n	Simple_repeat	1	138	(0)	2482312
361	31.9	4.8	3.5	chr22	44661657	44661799	(6156669)	C	L2b	LINE/L2	(2)	3373	3229	2482370
392	30.9	5.7	0.7	chr22	44685008	44685157	(6133311)	+	MIRb	SINE/MIR	21	178	(90)	2482426
1590	20.6	9.5	3.2	chr22	46335153	46335459	(4483009)	C	MER4B	LTR/ERV1	(263)	347	2	2485393
2251	11.2	0.0	0.0	chr22	46385976	46386269	(4432199)	C	AluSx	SINE/Alu	(18)	294	1	2485449
2392	9.5	0.0	1.3	chr22	46386743	46387057	(4431411)	C	AluSq2	SINE/Alu	(2)	311	1	2485450
12	13.6	2.8	5.4	chr22	49853226	49853261	(965207)	+	(CGCCC)n	Simple_repeat	1	37	(0)	2489842
21	14.6	0.0	4.1	chr22	49853776	49853824	(964644)	+	(GCCCC)n	Simple_repeat	1	49	(0)	2489843
9567	6.5	8.2	0.9	chr22	49989349	49990633	(827835)	C	SVA_A	Retroposon/SVA	(0)	1387	1	2490037
23	19.0	3.9	3.8	chr22	50185845	50185921	(632547)	+	(CCCGC)n	Simple_repeat	1	80	(0)	2490311
19	31.1	2.1	2.1	chr22	50186029	50186122	(632346)	+	G-rich	Low_complexity	1	96	(0)	2490312
243	22.8	7.1	1.2	chr3	1729873	1729952	(196565607)	+	L2a	LINE/L2	2721	2805	(614)	2494819
10095	3.6	3.0	8.7	chr3	5113234	5114703	(193180856)	C	SVA_D	Retroposon/SVA	(3)	1383	1	2500239
5097	7.2	1.1	2.7	chr3	5242386	5243512	(193052047)	C	SVA_B	Retroposon/SVA	(13)	1370	14	2500474
39	2.6	0.0	0.0	chr3	9397652	9397691	(188897868)	+	(GCC)n	Simple_repeat	1	40	(0)	2507136
5512	4.1	0.9	16.0	chr3	9559359	9560382	(188735177)	+	SVA_D	Retroposon/SVA	1	868	(518)	2507448
6802	7.7	2.5	4.1	chr3	10069494	10071145	(188224414)	+	SVA_D	Retroposon/SVA	61	1387	(0)	2508587
323	30.1	3.9	0.8	chr3	10416408	10416531	(187879028)	+	MER102a	DNA/hAT-Charlie	8	135	(195)	2509365
219	23.8	3.4	6.7	chr3	10416664	10416753	(187878806)	+	L3	LINE/CR1	3820	3906	(193)	2509366
18	8.7	0.0	0.0	chr3	10416754	10416778	(187878781)	+	(T)n	Simple_repeat	1	25	(0)	2509367
1810	17.5	3.4	3.3	chr3	10416872	10417379	(187878180)	C	SVA_F	Retroposon/SVA	(518)	857	433	2509368
209	26.9	16.7	5.2	chr3	12662590	12662820	(185632739)	+	L2c	LINE/L2	2943	3205	(182)	2513759
55	0.0	0.0	0.0	chr3	14403078	14403124	(183892435)	+	(GT)n	Simple_repeat	1	47	(0)	2516884
3831	12.2	6.1	2.7	chr3	15619724	15620803	(182674756)	C	MER11A	LTR/ERVK	(4)	1232	1	2519162
6485	8.0	3.1	4.3	chr3	15741801	15743355	(182552204)	+	SVA_D	Retroposon/SVA	70	1370	(17)	2519336
2777	10.9	5.8	0.8	chr3	19839681	19840168	(178455391)	+	L1PREC2	LINE/L1	5177	5690	(2451)	2525190
1225	19.4	2.6	3.2	chr3	19840170	19840500	(178455059)	+	SVA_F	Retroposon/SVA	421	857	(518)	2525194
4432	8.1	3.5	7.3	chr3	20282479	20283557	(178012002)	+	MER11A	LTR/ERVK	1	1266	(0)	2525958
9587	5.0	0.9	11.2	chr3	20547286	20548829	(177746730)	C	SVA_B	Retroposon/SVA	(0)	1383	1	2526293
15	9.8	0.0	0.0	chr3	23946025	23946046	(174349513)	+	(GC)n	Simple_repeat	1	22	(0)	2531076
198	20.9	0.0	0.0	chr3	23993490	23993532	(174302027)	C	L3	LINE/CR1	(6)	4093	4051	2531159
706	28.3	18.0	2.2	chr3	23993563	23993891	(174301668)	C	LTR16E1	LTR/ERVL	(5)	533	132	2531160
2166	21.7	2.4	5.3	chr3	23993892	23994401	(174301158)	C	LTR42	LTR/ERVL	(0)	495	1	2531161
366	27.8	7.1	1.7	chr3	32467553	32467724	(165827835)	C	MER102b	DNA/hAT-Charlie	(155)	186	5	2543934
15	19.5	6.4	0.0	chr3	32468102	32468148	(165827411)	+	(GTT)n	Simple_repeat	1	50	(0)	2543935
2354	6.7	1.0	1.0	chr3	32468152	32468448	(165827111)	C	AluSx1	SINE/Alu	(15)	297	1	2543936
12	19.9	0.0	0.0	chr3	33798625	33798653	(164496906)	+	(CAGC)n	Simple_repeat	1	29	(0)	2546482
988	24.3	4.7	5.3	chr3	34075679	34075978	(164219581)	C	L2a	LINE/L2	(0)	3426	3129	2546921
1156	15.3	0.9	2.3	chr3	34076086	34076299	(164219260)	C	SVA_F	Retroposon/SVA	(744)	631	421	2546922
528	25.5	6.7	2.0	chr3	34076303	34076502	(164219057)	C	L2a	LINE/L2	(276)	3150	2941	2546914
581	25.4	2.1	2.1	chr3	34076515	34076659	(164218900)	C	LTR16A1	LTR/ERVL	(306)	150	6	2546923
5036	13.2	2.2	4.7	chr3	34824105	34824963	(163470596)	+	LTR1A2	LTR/ERV1	1	837	(0)	2547896
2555	9.4	0.0	0.0	chr3	37236580	37236888	(161058671)	C	AluSc5	SINE/Alu	(0)	309	1	2551238
496	29.7	8.9	5.1	chr3	37236889	37237197	(161058362)	+	L1ME3G	LINE/L1	384	632	(292)	2551237
1631	13.8	2.8	0.0	chr3	38050953	38051199	(160244360)	C	AluJb	SINE/Alu	(57)	255	2	2552459
13	17.1	6.0	3.8	chr3	38051365	38051414	(160244145)	+	(CCTGCTG)n	Simple_repeat	1	53	(0)	2552460
11196	4.2	1.2	1.1	chr3	38064012	38065390	(160230169)	C	SVA_B	Retroposon/SVA	(0)	1383	3	2552484
267	16.2	0.0	5.6	chr3	39260896	39260967	(159034592)	+	L1ME4c	LINE/L1	110	177	(653)	2554246
8868	5.7	3.5	3.9	chr3	39655292	39656655	(158638904)	+	SVA_B	Retroposon/SVA	25	1383	(0)	2554861
5903	9.3	3.7	2.7	chr3	41840388	41842153	(156453406)	+	SVA_A	Retroposon/SVA	47	1387	(0)	2558030
8614	4.5	0.2	9.5	chr3	41982619	41983869	(156311690)	C	SVA_C	Retroposon/SVA	(18)	1366	223	2558307
9045	9.1	4.4	0.8	chr3	42909070	42910380	(155385179)	C	SVA_F	Retroposon/SVA	(3)	1372	13	2559869
224	24.1	0.0	3.7	chr3	44712922	44713003	(153582556)	+	L2b	LINE/L2	3297	3375	(0)	2562545
5756	8.2	1.4	3.6	chr3	44820355	44822089	(153473470)	C	SVA_D	Retroposon/SVA	(5)	1381	82	2562733
5251	21.2	7.3	3.5	chr3	46488577	46488737	(151806822)	C	L1MC3	LINE/L1	(1430)	6355	6204	2565461
489	21.8	4.7	2.1	chr3	46488743	46488887	(151806672)	+	LTR41B	LTR/ERVL	19	167	(591)	2565464
377	26.0	16.2	1.0	chr3	46489221	46489418	(151806141)	+	LTR41B	LTR/ERVL	444	677	(81)	2565464
13	22.5	2.0	3.9	chr3	46812591	46812640	(151482919)	+	G-rich	Low_complexity	1	51	(0)	2565967
14	8.9	0.0	0.0	chr3	46882670	46882693	(151412866)	+	(GGGA)n	Simple_repeat	1	24	(0)	2566056
16	14.2	0.0	0.0	chr3	46882749	46882779	(151412780)	+	(AGAC)n	Simple_repeat	1	31	(0)	2566057
6467	5.3	1.5	3.0	chr3	46963419	46964951	(151330608)	+	SVA_D	Retroposon/SVA	2	1369	(17)	2566183
15	26.8	0.0	0.0	chr3	47163892	47163936	(151131623)	+	(CTGCGG)n	Simple_repeat	1	45	(0)	2566541
36	0.0	2.4	2.4	chr3	47164013	47164053	(151131506)	+	(GCG)n	Simple_repeat	1	42	(0)	2566542
17	24.5	1.5	4.3	chr3	47164059	47164126	(151131433)	+	(TCCC)n	Simple_repeat	1	69	(0)	2566543
9535	3.7	9.2	0.3	chr3	47308773	47309978	(150985581)	C	SVA_C	Retroposon/SVA	(3)	1381	58	2566889
2121	8.8	1.0	5.3	chr3	47512253	47512572	(150782987)	+	AluSx	SINE/Alu	1	306	(6)	2567323
7658	3.8	0.0	15.3	chr3	47951316	47952639	(150342920)	+	SVA_C	Retroposon/SVA	1	1121	(263)	2568322
5498	8.8	2.1	6.8	chr3	48055242	48056610	(150238949)	+	SVA_F	Retroposon/SVA	56	857	(518)	2568539
13	8.5	0.0	3.7	chr3	48685810	48685836	(149609723)	+	(GGCAG)n	Simple_repeat	1	27	(0)	2569696
17	26.6	5.3	3.0	chr3	48685860	48685954	(149609605)	+	(CGCCG)n	Simple_repeat	1	100	(0)	2569697
15	14.9	2.6	2.5	chr3	48686065	48686103	(149609456)	+	(CCCCTCA)n	Simple_repeat	1	40	(0)	2569698
458	25.2	1.8	0.0	chr3	48717505	48717611	(149577948)	C	MER81	DNA/hAT-Blackjack	(5)	109	1	2569769
6666	7.7	2.0	19.2	chr3	50083645	50085883	(148209676)	C	SVA_D	Retroposon/SVA	(0)	1386	11	2572610
9112	5.6	0.4	19.8	chr3	50803086	50804780	(147490779)	C	SVA_B	Retroposon/SVA	(12)	1371	5	2573588
9106	4.2	0.0	22.6	chr3	51607107	51608890	(146686669)	C	SVA_B	Retroposon/SVA	(0)	1383	3	2574724
10035	2.3	0.4	19.6	chr3	51857958	51859674	(146435885)	+	SVA_D	Retroposon/SVA	2	1386	(0)	2575066
206	37.0	5.4	4.2	chr3	52287628	52287792	(146007767)	C	MIRc	SINE/MIR	(97)	171	6	2575713
13	5.2	0.0	0.0	chr3	53046028	53046047	(145249512)	+	(CGG)n	Simple_repeat	1	20	(0)	2576892
23	21.5	6.9	4.0	chr3	53046088	53046203	(145249356)	+	(GCGCCC)n	Simple_repeat	1	124	(0)	2576893
1964	13.2	0.3	1.4	chr3	53196363	53196651	(145098908)	C	AluJb	SINE/Alu	(22)	290	5	2577180
341	34.3	7.5	4.4	chr3	53996251	53996613	(144298946)	+	LTR88a	LTR/Gypsy?	7	381	(435)	2578372
7514	6.0	2.7	0.0	chr3	55248802	55249674	(143045885)	C	MER11D	LTR/ERVK	(0)	897	1	2580150
8935	3.8	0.0	25.1	chr3	56583299	56585147	(141710412)	C	SVA_C	Retroposon/SVA	(0)	1384	1	2582391
207	35.4	7.3	2.3	chr3	57080073	57080220	(141215339)	C	MIRb	SINE/MIR	(0)	262	103	2583326
9065	7.4	3.1	4.9	chr3	57338000	57339393	(140956166)	+	SVA_A	Retroposon/SVA	20	1387	(0)	2583729
7862	2.8	0.4	37.0	chr3	58289234	58291423	(140004136)	C	SVA_D	Retroposon/SVA	(0)	1386	1	2585733
15	16.5	8.9	1.6	chr3	58332712	58332767	(139962792)	+	(GCGCAG)n	Simple_repeat	1	61	(0)	2585826
2181	10.9	0.6	1.3	chr3	58374163	58374473	(139921086)	C	AluSx1	SINE/Alu	(3)	309	1	2585910
9883	6.3	2.8	1.8	chr3	60926959	60928326	(137367233)	+	SVA_B	Retroposon/SVA	1	1383	(0)	2589738
35	5.4	0.0	0.0	chr3	61202068	61202106	(137093453)	+	(AC)n	Simple_repeat	1	39	(0)	2590159
1084	16.8	2.6	3.0	chr3	61202139	61202408	(137093151)	+	SVA_F	Retroposon/SVA	441	709	(666)	2590160
531	25.2	17.1	5.7	chr3	61202511	61202772	(137092787)	+	L1MEd	LINE/L1	1173	1467	(5636)	2590161
67	0.0	0.0	0.0	chr3	61249934	61249990	(137045569)	+	(AC)n	Simple_repeat	1	57	(0)	2590232
10994	5.5	0.4	7.8	chr3	61392943	61394436	(136901123)	C	SVA_B	Retroposon/SVA	(0)	1383	1	2590482
1541	32.1	11.0	2.2	chr3	65030513	65031391	(133264168)	C	L2b	LINE/L2	(497)	2922	1946	2596786
2140	12.9	1.7	0.0	chr3	69095501	69095794	(129199765)	C	AluSz6	SINE/Alu	(13)	299	1	2603445
26	0.0	0.0	0.0	chr3	69096032	69096056	(129199503)	+	(TGTC)n	Simple_repeat	1	25	(0)	2603446
16	16.6	3.9	3.8	chr3	71064851	71064901	(127230658)	+	(GCGCGG)n	Simple_repeat	1	53	(0)	2606644
14	21.0	6.2	2.9	chr3	71064928	71064991	(127230568)	+	(CGCGC)n	Simple_repeat	1	68	(0)	2606645
14	24.0	0.0	0.0	chr3	71064963	71065001	(127230558)	+	(CGCCC)n	Simple_repeat	1	39	(0)	2606646
28	0.0	0.0	0.0	chr3	71065026	71065052	(127230507)	+	(CCGCG)n	Simple_repeat	1	27	(0)	2606647
17	13.9	0.0	6.7	chr3	71065067	71065111	(127230448)	+	(CCGCGC)n	Simple_repeat	1	45	(0)	2606648
342	28.3	12.8	1.6	chr3	72088516	72088709	(126206850)	C	LTR52	LTR/ERVL	(136)	285	67	2608436
612	17.0	2.3	3.2	chr3	72088739	72088895	(126206664)	+	SVA_F	Retroposon/SVA	464	736	(639)	2608438
10190	5.5	1.2	2.9	chr3	72787701	72789094	(125506465)	+	SVA_B	Retroposon/SVA	13	1383	(0)	2609948
1829	15.1	2.8	2.8	chr3	75108096	75108386	(123187173)	+	AluSz6	SINE/Alu	1	291	(21)	2613719
35	0.0	0.0	0.0	chr3	75108415	75108446	(123187113)	+	(GAAGGG)n	Simple_repeat	1	32	(0)	2613720
1568	12.1	22.1	0.7	chr3	75108448	75108755	(123186804)	C	MSTA	LTR/ERVL-MaLR	(35)	393	1	2613721
6835	7.8	1.4	2.7	chr3	75288733	75290456	(123005103)	+	SVA_D	Retroposon/SVA	53	1363	(23)	2613967
16	13.4	3.0	0.0	chr3	75397404	75397436	(122898123)	+	(TGGT)n	Simple_repeat	1	34	(0)	2614127
851	12.7	5.3	0.0	chr3	75397439	75397564	(122897995)	C	AluSz6	SINE/Alu	(179)	133	1	2614128
1390	11.5	3.3	0.4	chr3	75397593	75397828	(122897731)	C	SVA_F	Retroposon/SVA	(689)	686	444	2614129
2457	5.0	2.3	2.0	chr3	75397826	75398169	(122897390)	+	LTR7B	LTR/ERV1	82	426	(38)	2614130
320	21.9	0.0	9.6	chr3	75668819	75668954	(122626605)	C	LSAU	Satellite	(374)	124	2	2614560
1262	31.9	11.3	0.5	chr3	75859256	75859901	(122435658)	+	L2	LINE/L2	916	1640	(1779)	2614783
8781	3.4	0.1	26.2	chr3	82583835	82585707	(115709852)	+	SVA_D	Retroposon/SVA	1	1385	(1)	2623574
6783	7.5	2.7	0.1	chr3	84896402	84897275	(113398284)	C	MER11D	LTR/ERVK	(0)	897	1	2626327
6894	6.5	2.6	0.8	chr3	94647179	94648059	(103647500)	+	MER11D	LTR/ERVK	1	897	(0)	2634561
5832	6.9	2.1	1.9	chr3	95744162	95745331	(102550228)	C	SVA_D	Retroposon/SVA	(0)	1386	382	2635868
464	10.6	0.0	4.2	chr3	95745349	95745466	(102550093)	+	SVA_F	Retroposon/SVA	653	765	(610)	2635868
20	20.4	0.0	0.0	chr3	96814782	96814826	(101480733)	+	GA-rich	Low_complexity	1	45	(0)	2637044
9660	14.0	1.2	8.5	chr3	97386009	97387769	(100907790)	C	MSTA-int	LTR/ERVL-MaLR	(0)	1631	1	2637738
5097	8.8	2.2	7.0	chr3	98836460	98839024	(99456535)	C	SVA_F	Retroposon/SVA	(367)	1008	58	2639522
2261	16.4	5.6	10.0	chr3	99633682	99633721	(98661838)	+	MLT2B3	LTR/ERVL	514	554	(0)	2640482
515	28.1	1.7	11.4	chr3	99633824	99634016	(98661543)	C	MIR3	SINE/MIR	(25)	183	10	2640484
1282	25.0	16.8	0.2	chr3	99741422	99741914	(98553645)	C	MLT1G	LTR/ERVL-MaLR	(0)	591	1	2640633
20	8.4	5.3	0.0	chr3	99876079	99876116	(98419443)	+	(GCCGGG)n	Simple_repeat	1	40	(0)	2640829
18	29.8	0.0	0.0	chr3	99876246	99876302	(98419257)	+	(GCG)n	Simple_repeat	1	57	(0)	2640830
8151	3.2	1.7	35.1	chr3	100476930	100479025	(97816534)	C	SVA_D	Retroposon/SVA	(2)	1384	1	2641780
4678	9.7	3.2	3.1	chr3	101011980	101013017	(97282542)	C	MER11A	LTR/ERVK	(0)	1266	1	2642445
9005	6.1	0.1	16.1	chr3	101550905	101552496	(96743063)	+	SVA_A	Retroposon/SVA	51	1387	(0)	2643160
9525	2.8	0.1	29.1	chr3	113045642	113047592	(85247967)	C	SVA_D	Retroposon/SVA	(0)	1386	1	2658630
7089	7.3	1.6	4.2	chr3	118717749	118719230	(79576329)	C	SVA_D	Retroposon/SVA	(0)	1387	70	2666591
293	29.7	4.1	4.1	chr3	119241130	119241252	(79054307)	C	MIRb	SINE/MIR	(47)	221	99	2667269
421	22.7	5.4	7.2	chr3	119673603	119673754	(78621805)	C	L2a	LINE/L2	(220)	3206	3058	2667992
1551	16.9	5.1	2.7	chr3	119673856	119674296	(78621263)	+	SVA_F	Retroposon/SVA	421	857	(518)	2667994
10673	4.3	0.4	6.5	chr3	122201000	122202475	(76093084)	C	SVA_D	Retroposon/SVA	(0)	1386	2	2671628
5255	5.9	4.6	2.8	chr3	122724650	122725431	(75570128)	C	SVA_A	Retroposon/SVA	(0)	1387	591	2672511
257	26.0	4.8	0.0	chr3	122725481	122725580	(75569979)	C	L1MC5a	LINE/L1	(1570)	1207	1103	2672512
764	22.2	4.0	0.0	chr3	125592841	125593056	(72702503)	+	L1M4	LINE/L1	4971	5195	(951)	2677358
243	14.1	0.0	6.0	chr3	125593057	125593116	(72702443)	+	MER4D1	LTR/ERV1	1	55	(817)	2677359
932	26.4	3.4	5.4	chr3	128546345	128546473	(69749086)	+	L1MEc	LINE/L1	3021	3153	(3166)	2681899
504	20.0	2.8	0.0	chr3	128546474	128546578	(69748981)	C	ERVL-E-int	LTR/ERVL	(4067)	1600	1493	2681898
777	25.7	11.2	6.4	chr3	128546645	128547127	(69748432)	C	MLT1H	LTR/ERVL-MaLR	(28)	521	13	2681904
8946	3.8	1.3	12.0	chr3	128772722	128774097	(69521462)	+	SVA_C	Retroposon/SVA	158	1384	(0)	2682439
190	30.8	14.7	5.0	chr3	129026766	129026905	(69268654)	C	L3	LINE/CR1	(601)	3498	3343	2682900
245	27.7	2.6	7.4	chr3	129026923	129027043	(69268516)	C	MLT1L	LTR/ERVL-MaLR	(81)	529	415	2682901
6046	8.2	1.9	17.3	chr3	129338486	129340852	(68954707)	C	SVA_D	Retroposon/SVA	(17)	1369	1	2683567
26	2.8	2.6	2.6	chr3	129607107	129607144	(68688415)	+	(TCTCTGCG)n	Simple_repeat	1	39	(0)	2684063
14	22.4	2.4	0.0	chr3	129607184	129607225	(68688334)	+	(TTCTGC)n	Simple_repeat	1	43	(0)	2684064
9974	2.7	0.0	20.2	chr3	131951522	131953258	(66342301)	+	SVA_D	Retroposon/SVA	1	1386	(0)	2687723
11	27.7	0.0	0.0	chr3	132660552	132660590	(65634969)	+	(GGAGCG)n	Simple_repeat	1	39	(0)	2688747
20	10.4	0.0	8.0	chr3	133573614	133573663	(64721896)	+	(CCCTC)n	Simple_repeat	1	50	(0)	2690190
6258	11.2	14.4	1.8	chr3	135956953	135958056	(62337503)	C	MER11A	LTR/ERVK	(0)	1266	1	2693581
9750	6.7	0.7	9.8	chr3	138520780	138522300	(59773259)	+	SVA_B	Retroposon/SVA	3	1383	(0)	2697664
7268	6.6	15.3	2.0	chr3	138545179	138546269	(59749290)	+	MER11A	LTR/ERVK	1	1262	(4)	2697702
2785	20.3	6.0	0.8	chr3	139485326	139485991	(58809568)	C	L1MB5	LINE/L1	(0)	6174	5472	2699389
7798	3.0	0.0	0.2	chr3	142206945	142207843	(56087716)	+	MER11D	LTR/ERVK	1	897	(0)	2703744
13	11.6	2.2	8.7	chr3	142225686	142225730	(56069829)	+	(CAGCCGC)n	Simple_repeat	1	46	(0)	2703768
2437	5.8	0.3	0.0	chr3	142225760	142226051	(56069508)	C	AluSg	SINE/Alu	(16)	294	2	2703769
2295	13.4	0.0	0.0	chr3	142554954	142555266	(55740293)	+	AluSq2	SINE/Alu	1	313	(0)	2704297
14	13.7	4.5	4.3	chr3	146251023	146251066	(52044493)	+	GA-rich	Low_complexity	1	46	(0)	2709348
6975	6.2	2.7	0.0	chr3	151808620	151809492	(46486067)	C	MER11D	LTR/ERVK	(0)	897	1	2717294
5436	10.0	10.1	3.0	chr3	153874245	153875323	(44420236)	C	MER11A	LTR/ERVK	(0)	1266	6	2720376
396	32.9	17.8	2.5	chr3	156024952	156025350	(42270209)	+	L2c	LINE/L2	2910	3382	(5)	2723457
6471	11.7	4.8	49.6	chr3	157177939	157179758	(41115801)	C	SVA_A	Retroposon/SVA	(1)	1386	421	2725101
2045	12.1	2.4	2.4	chr3	159837441	159837738	(38457821)	+	AluSx	SINE/Alu	1	298	(14)	2728825
15	17.9	0.0	0.0	chr3	160226116	160226147	(38069412)	+	(GGC)n	Simple_repeat	1	32	(0)	2729486
10246	5.0	1.7	4.2	chr3	164783893	164785312	(33510247)	+	SVA_B	Retroposon/SVA	1	1383	(0)	2735365
1318	30.6	3.2	0.5	chr3	165041743	165042172	(33253387)	+	LTR16B	LTR/ERVL	22	463	(0)	2735696
562	27.8	6.2	3.6	chr3	165042379	165042598	(33252961)	+	Tigger13a	DNA/TcMar-Tigger	11	236	(535)	2735697
10694	4.3	0.1	0.5	chr3	165546743	165548053	(32747506)	+	HERVK11D-int	LTR/ERVK	6446	7752	(0)	2736394
6438	7.1	6.1	0.0	chr3	165548054	165548895	(32746664)	+	MER11D	LTR/ERVK	1	897	(0)	2736394
6801	6.5	4.0	0.0	chr3	165676473	165677333	(32618226)	C	MER11D	LTR/ERVK	(0)	897	1	2736553
9600	5.2	0.2	14.7	chr3	167018076	167019691	(31275868)	+	SVA_B	Retroposon/SVA	2	1383	(0)	2738196
11	21.8	0.0	4.9	chr3	169662565	169662605	(28632954)	+	(GCCCCC)n	Simple_repeat	1	41	(0)	2741631
13	25.5	5.5	2.6	chr3	169662638	169662710	(28632849)	+	(CGCAG)n	Simple_repeat	1	77	(0)	2741632
1401	24.2	4.7	2.4	chr3	169836695	169836973	(28458586)	C	L2a	LINE/L2	(290)	3136	2848	2741891
308	25.2	7.8	1.6	chr3	169836990	169837110	(28458449)	C	L2a	LINE/L2	(1714)	1705	1577	2741891
495	23.8	10.4	2.6	chr3	169837111	169837304	(28458255)	+	L2a	LINE/L2	3207	3417	(9)	2741885
13	14.4	3.2	0.0	chr3	170357188	170357218	(27938341)	+	G-rich	Low_complexity	1	32	(0)	2742885
15	20.3	4.4	0.0	chr3	170357245	170357255	(27938304)	+	GA-rich	Low_complexity	1	46	(0)	2742886
12	18.4	0.0	3.0	chr3	170357256	170357288	(27938271)	+	G-rich	Low_complexity	1	33	(0)	2742887
18	16.9	4.2	2.0	chr3	170357487	170357534	(27938025)	+	(GGC)n	Simple_repeat	1	50	(0)	2742888
13	15.0	0.0	8.9	chr3	170357539	170357583	(27937976)	+	(CTCCC)n	Simple_repeat	1	45	(0)	2742889
12	15.8	0.0	3.3	chr3	170357586	170357615	(27937944)	+	(GGC)n	Simple_repeat	1	30	(0)	2742890
242	20.3	5.3	2.5	chr3	170815354	170815468	(27480091)	C	L1ME4c	LINE/L1	(122)	6002	5960	2743634
2181	13.0	0.3	8.9	chr3	170815486	170815856	(27479703)	+	MER1B	DNA/hAT-Charlie	1	339	(0)	2743635
226	25.0	3.0	1.5	chr3	174589527	174589591	(23705968)	C	L1MC5a	LINE/L1	(2442)	335	270	2749198
12	15.3	3.5	0.0	chr3	174589840	174589868	(23705691)	+	(GTT)n	Simple_repeat	1	30	(0)	2749199
6088	11.1	4.0	28.8	chr3	175131152	175133754	(23161805)	C	SVA_D	Retroposon/SVA	(0)	1386	8	2749958
10469	4.2	0.3	8.3	chr3	177412214	177413712	(20881847)	C	SVA_C	Retroposon/SVA	(6)	1378	1	2753211
9850	5.3	1.4	3.2	chr3	181925308	181926663	(16368896)	C	SVA_B	Retroposon/SVA	(0)	1383	52	2760249
3020	1.0	0.0	0.0	chr3	185689687	185689988	(12605571)	+	AluYa5	SINE/Alu	1	302	(9)	2766905
10086	5.8	2.2	2.9	chr3	186434854	186436234	(11859325)	C	SVA_B	Retroposon/SVA	(0)	1383	12	2768347
251	25.2	20.5	0.7	chr3	189738069	189738216	(8557343)	+	MamTip2	DNA/hAT-Tip100	38	222	(83)	2774015
230	32.0	9.5	5.6	chr3	190119966	190120127	(8175432)	C	MIR3	SINE/MIR	(11)	197	29	2774609
21	17.3	0.0	0.0	chr3	190120671	190120711	(8174848)	+	(GCA)n	Simple_repeat	1	41	(0)	2774610
7435	4.1	1.4	0.0	chr3	191267466	191268349	(7027210)	C	MER11D	LTR/ERVK	(0)	897	1	2776289
610	28.2	13.2	1.8	chr3	194333041	194333440	(3962119)	C	MER20B	DNA/hAT-Charlie	(10)	773	321	2780947
10671	5.0	1.7	1.2	chr3	195599157	195600516	(2695043)	C	SVA_C	Retroposon/SVA	(17)	1367	1	2783343
311	31.1	3.9	5.1	chr3	195714500	195714655	(2580904)	+	L2	LINE/L2	2831	2984	(435)	2783530
825	28.6	5.9	0.4	chr3	195714783	195715021	(2580538)	C	LTR16E2	LTR/ERVL	(56)	512	260	2783531
250	39.2	6.5	0.6	chr3	195849250	195849408	(2446151)	C	MIRb	SINE/MIR	(74)	194	26	2783737
596	23.4	0.6	1.8	chr3	195849608	195849777	(2445782)	+	LTR16B2	LTR/ERVL	294	461	(1)	2783738
205	27.1	0.0	2.8	chr3	195849779	195849850	(2445709)	C	L2b	LINE/L2	(2116)	1303	1234	2783734
222	27.8	0.0	0.0	chr3	195850023	195850076	(2445483)	+	MER5B	DNA/hAT-Charlie	1	54	(124)	2783739
2234	9.7	0.3	0.7	chr3	195850090	195850389	(2445170)	+	AluSx1	SINE/Alu	2	300	(12)	2783740
1956	16.8	0.7	0.0	chr3	195897504	195897801	(2397758)	C	AluJb	SINE/Alu	(12)	300	1	2783803
9622	4.5	0.4	14.3	chr3	196243542	196245112	(2050447)	+	SVA_C	Retroposon/SVA	32	1384	(0)	2784568
9908	6.6	1.2	3.6	chr3	196385004	196386393	(1909166)	+	SVA_B	Retroposon/SVA	28	1383	(0)	2784895
7290	6.5	2.0	1.5	chr3	196542580	196543623	(1751936)	C	SVA_D	Retroposon/SVA	(0)	1386	400	2785258
1320	23.7	6.9	8.7	chr3	196543624	196543781	(1751778)	C	L1ME1	LINE/L1	(820)	5326	5202	2785256
1219	25.0	4.7	1.9	chr4	256504	256874	(189957681)	C	SVA_E	Retroposon/SVA	(573)	809	428	2788829
432	17.6	1.4	4.3	chr4	321947	322072	(189892483)	+	SVA_F	Retroposon/SVA	456	671	(704)	2788927
15	11.7	10.2	1.9	chr4	2242081	2242129	(187972426)	+	(GCCTCGCGC)n	Simple_repeat	1	54	(0)	2791310
22	17.2	1.3	7.8	chr4	2242305	2242380	(187972175)	+	(GCAGG)n	Simple_repeat	1	77	(0)	2791311
363	24.1	0.0	2.4	chr4	2470187	2470271	(187744284)	C	MIR3	SINE/MIR	(76)	132	50	2791606
19	22.9	0.0	0.0	chr4	2963881	2963926	(187250629)	+	(GCG)n	Simple_repeat	1	46	(0)	2792483
553	23.1	6.7	2.5	chr4	3635388	3635608	(186578947)	C	MER21B	LTR/ERVL	(6)	932	617	2793410
320	19.5	3.8	0.0	chr4	3635606	3635682	(186578873)	C	MER21C	LTR/ERVL	(172)	696	617	2793411
2062	18.6	6.7	0.0	chr4	3635680	3636124	(186578431)	C	MER21B	LTR/ERVL	(172)	696	220	2793412
552	27.1	13.4	1.0	chr4	6221284	6221492	(183993063)	C	MIR	SINE/MIR	(0)	262	24	2797979
1031	16.2	0.0	0.0	chr4	6691332	6691491	(183523064)	+	AluJr	SINE/Alu	137	296	(16)	2798887
2353	11.3	0.3	0.0	chr4	6691495	6691803	(183522752)	+	AluSz	SINE/Alu	1	310	(2)	2798888
2401	6.2	0.0	0.0	chr4	6701144	6701427	(183513128)	C	AluSx1	SINE/Alu	(28)	284	1	2798906
2044	11.2	1.0	2.0	chr4	6701716	6702020	(183512535)	C	AluSx1	SINE/Alu	(10)	302	1	2798907
994	26.2	2.9	0.4	chr4	6970209	6970442	(183244113)	+	MIR	SINE/MIR	2	241	(21)	2799405
10240	5.0	0.7	10.8	chr4	7601672	7603208	(182611347)	C	SVA_B	Retroposon/SVA	(2)	1381	1	2800393
25	10.7	0.0	0.0	chr4	20251997	20252036	(169962519)	+	(GGC)n	Simple_repeat	1	40	(0)	2820693
10377	3.5	0.2	11.6	chr4	40140582	40142144	(150072411)	C	SVA_D	Retroposon/SVA	(1)	1385	1	2851365
9467	4.0	2.3	9.7	chr4	41048639	41050114	(149164441)	+	SVA_C	Retroposon/SVA	1	1364	(20)	2853355
7169	5.9	0.2	36.6	chr4	41490281	41492463	(148722092)	C	SVA_A	Retroposon/SVA	(0)	1387	2	2854163
13	8.5	4.0	0.0	chr4	44448672	44448696	(145765859)	+	(CGG)n	Simple_repeat	1	26	(0)	2858301
5157	9.8	3.4	0.2	chr4	45206938	45207685	(145006870)	+	SVA_A	Retroposon/SVA	58	872	(515)	2859268
1285	13.8	4.1	1.9	chr4	45207693	45207957	(145006598)	+	SVA_F	Retroposon/SVA	422	692	(683)	2859269
6507	9.3	5.0	33.6	chr4	45207959	45209309	(145005246)	+	SVA_A	Retroposon/SVA	421	1386	(1)	2859270
4236	9.2	4.5	2.0	chr4	47753003	47754007	(142460548)	C	MER11A	LTR/ERVK	(0)	1266	1	2862722
9778	4.1	0.6	15.9	chr4	48291729	48293365	(141921190)	+	SVA_C	Retroposon/SVA	1	1384	(0)	2863623
1150	16.1	0.5	5.1	chr4	48777905	48778121	(141436434)	+	AluJr	SINE/Alu	1	207	(105)	2864374
326	30.5	8.4	0.6	chr4	48909844	48910018	(141304537)	+	L2c	LINE/L2	3020	3209	(178)	2864616
1174	15.5	0.0	0.6	chr4	48910079	48910252	(141304303)	C	FAM	SINE/Alu	(12)	173	1	2864617
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
1094	12.9	0.2	0.0	chr4	49322499	49324803	(140889752)	+	ACRO1	Satellite/acro	1	2308	(0)	2865130
10652	4.8	0.7	3.6	chr4	52991985	52993410	(137221145)	+	SVA_B	Retroposon/SVA	1	1383	(0)	2867085
8472	2.9	1.5	20.1	chr4	53255234	53256916	(136957639)	C	SVA_D	Retroposon/SVA	(23)	1363	1	2867443
2146	12.1	1.0	0.3	chr4	54192478	54192782	(136021773)	+	AluSx1	SINE/Alu	1	307	(5)	2868922
234	32.9	0.0	1.2	chr4	54192847	54192926	(136021629)	C	L1MC4	LINE/L1	(372)	7670	7592	2868923
1336	11.9	1.6	3.6	chr4	54192931	54193182	(136021373)	+	SVA_F	Retroposon/SVA	421	667	(708)	2868924
9486	3.1	0.4	22.3	chr4	54324793	54326569	(135887986)	C	SVA_D	Retroposon/SVA	(0)	1386	1	2869118
7477	4.5	0.5	0.6	chr4	54408991	54409888	(135804667)	C	MER11D	LTR/ERVK	(0)	897	1	2869250
827	18.2	4.0	5.0	chr4	54466452	54466653	(135747902)	C	L1MCa	LINE/L1	(4094)	2657	2458	2869344
4903	9.1	2.7	2.1	chr4	54466654	54467666	(135746889)	+	MER11A	LTR/ERVK	1	1266	(0)	2869345
266	28.8	9.6	1.5	chr4	56907409	56907542	(133307013)	C	Tigger16a	DNA/TcMar-Tigger	(260)	697	552	2873603
9265	6.5	0.9	9.6	chr4	64036670	64038133	(126176422)	+	SVA_B	Retroposon/SVA	48	1383	(0)	2882689
13	18.2	0.0	4.9	chr4	65670313	65670353	(124544202)	+	(GCTGAGG)n	Simple_repeat	1	41	(0)	2884662
5158	9.4	4.0	0.1	chr4	67380164	67380991	(122833564)	+	SVA_A	Retroposon/SVA	12	872	(515)	2886832
5862	9.6	4.0	34.1	chr4	67380998	67382382	(122832173)	+	SVA_A	Retroposon/SVA	421	1387	(0)	2886833
9480	3.5	0.5	13.7	chr4	67636367	67637833	(122576722)	+	SVA_C	Retroposon/SVA	4	1364	(20)	2887252
12	17.7	3.1	0.0	chr4	70902282	70902313	(119312242)	+	(CCTCC)n	Simple_repeat	1	33	(0)	2891446
12	20.4	5.6	3.5	chr4	70902418	70902471	(119312084)	+	(CTCCTGT)n	Simple_repeat	1	57	(0)	2891447
1223	17.1	0.0	0.0	chr4	75954406	75954592	(114259963)	+	AluJb	SINE/Alu	16	202	(110)	2898466
6863	6.9	2.6	0.0	chr4	75954593	75955464	(114259091)	+	MER11D	LTR/ERVK	3	897	(0)	2898467
10287	3.5	0.0	14.0	chr4	76422706	76424316	(113790239)	+	SVA_D	Retroposon/SVA	1	1386	(0)	2899211
9519	3.3	0.4	16.2	chr4	77983174	77984787	(112229768)	C	SVA_D	Retroposon/SVA	(11)	1375	17	2901517
9592	5.8	1.8	0.1	chr4	78006566	78007887	(112206668)	C	SVA_B	Retroposon/SVA	(0)	1383	40	2901556
6375	6.7	2.0	4.4	chr4	78547347	78549048	(111665507)	+	SVA_D	Retroposon/SVA	32	1366	(20)	2902290
7225	4.7	1.0	23.9	chr4	79244643	79246390	(110968165)	+	SVA_B	Retroposon/SVA	40	1383	(0)	2903376
5803	9.2	2.2	2.0	chr4	82077124	82078574	(108135981)	+	SVA_B	Retroposon/SVA	32	1360	(23)	2907068
14	16.4	2.9	0.0	chr4	84965922	84965955	(105248600)	+	(CCGACC)n	Simple_repeat	1	35	(0)	2911909
14	0.0	0.0	0.0	chr4	86594582	86594599	(103619956)	+	(GAG)n	Simple_repeat	1	18	(0)	2914076
4181	8.7	2.8	1.7	chr4	87293570	87294581	(102919974)	C	MER11A	LTR/ERVK	(0)	1266	1	2915260
24	19.2	0.0	1.8	chr4	89837163	89837217	(100377338)	+	(TCC)n	Simple_repeat	1	55	(0)	2919194
306	37.1	5.3	1.6	chr4	91167679	91167804	(99046751)	C	MIRb	SINE/MIR	(121)	147	10	2920855
12	15.8	0.0	3.3	chr4	91167811	91167840	(99046715)	+	(ATAAC)n	Simple_repeat	1	30	(0)	2920856
6429	9.2	4.1	36.3	chr4	91167862	91169214	(99045341)	+	SVA_A	Retroposon/SVA	436	1387	(0)	2920857
7130	5.0	2.6	0.1	chr4	92217751	92218625	(97995930)	+	MER11D	LTR/ERVK	1	897	(0)	2922000
16571	13.1	1.9	0.7	chr4	97964871	97968744	(92245811)	+	L1PA6	LINE/L1	178	4116	(2203)	2929522
6743	7.4	3.0	0.0	chr4	97968745	97969614	(92244941)	+	MER11D	LTR/ERVK	1	897	(0)	2929523
8066	6.1	8.8	10.9	chr4	98329924	98331338	(91883217)	C	SVA_B	Retroposon/SVA	(0)	1383	2	2930022
7298	4.8	2.9	0.0	chr4	98479298	98480167	(91734388)	+	MER11D	LTR/ERVK	2	897	(0)	2930207
13	23.2	0.0	2.4	chr4	98928035	98928076	(91286479)	+	A-rich	Low_complexity	1	42	(0)	2930945
255	35.1	0.7	0.0	chr4	102761481	102761591	(87452964)	+	MIRb	SINE/MIR	147	262	(0)	2936102
18	29.9	0.0	1.6	chr4	104494731	104494793	(85719762)	+	GA-rich	Low_complexity	1	63	(0)	2938271
34	4.0	7.7	0.0	chr4	104494918	104494969	(85719586)	+	(TC)n	Simple_repeat	1	56	(0)	2938272
13	13.0	0.0	7.7	chr4	104495055	104495093	(85719462)	+	G-rich	Low_complexity	1	39	(0)	2938273
4351	9.0	5.1	2.9	chr4	105500230	105501215	(84713340)	C	SVA_A	Retroposon/SVA	(184)	1203	46	2939569
280	31.8	3.7	7.1	chr4	107654322	107654516	(82560039)	+	L2a	LINE/L2	3176	3422	(4)	2942342
808	17.1	0.0	0.0	chr4	108077057	108077179	(82137376)	+	AluJo	SINE/Alu	1	123	(189)	2942908
1725	14.8	4.2	2.5	chr4	108077207	108077767	(82136788)	+	SVA_F	Retroposon/SVA	422	857	(518)	2942909
11	16.4	5.9	0.0	chr4	109560059	109560092	(80654463)	+	(GCTCTC)n	Simple_repeat	1	36	(0)	2945187
16	0.0	0.0	0.0	chr4	109560093	109560110	(80654445)	+	(T)n	Simple_repeat	1	18	(0)	2945188
9952	5.8	4.6	0.8	chr4	109603083	109604400	(80610155)	+	SVA_B	Retroposon/SVA	13	1383	(0)	2945238
7114	5.5	2.5	27.3	chr4	109677830	109679647	(80534908)	C	SVA_A	Retroposon/SVA	(13)	1374	20	2945357
18	20.1	0.0	5.3	chr4	109703447	109703455	(80511100)	+	(GGCCCC)n	Simple_repeat	1	27	(30)	2945395
12	18.1	2.4	4.8	chr4	109703456	109703496	(80511059)	+	(GCCCC)n	Simple_repeat	1	42	(0)	2945396
17825	7.2	2.3	0.6	chr4	109852611	109855910	(80358645)	C	L1PA7	LINE/L1	(8)	6146	2781	2945626
3151	5.1	0.0	0.0	chr4	109855911	109856281	(80358274)	C	MER11D	LTR/ERVK	(526)	371	1	2945627
7023	5.1	3.3	0.2	chr4	109859069	109859937	(80354618)	C	MER11D	LTR/ERVK	(0)	897	1	2945628
3614	13.2	7.0	2.2	chr4	112072880	112073842	(78140713)	+	MER11A	LTR/ERVK	1	1266	(0)	2948654
367	18.2	0.0	0.0	chr4	112148044	112148118	(78066437)	+	LTR67B	LTR/ERVL	505	569	(51)	2948774
6828	8.4	3.1	4.5	chr4	112957034	112958648	(77255907)	C	SVA_D	Retroposon/SVA	(20)	1366	1	2950180
351	20.6	12.1	12.8	chr4	113761739	113761855	(76452700)	+	L1MDb	LINE/L1	597	712	(5697)	2951248
10326	5.7	1.7	0.5	chr4	113795887	113797250	(76417305)	+	SVA_B	Retroposon/SVA	2	1382	(1)	2951299
4585	9.7	3.3	1.6	chr4	115592253	115593252	(74621303)	+	MER11A	LTR/ERVK	1	1266	(0)	2953455
9513	5.3	1.2	3.1	chr4	118791510	118792905	(71421650)	+	SVA_B	Retroposon/SVA	13	1381	(2)	2957509
9702	7.1	2.2	3.4	chr4	121237960	121239357	(68975198)	+	SVA_B	Retroposon/SVA	1	1382	(1)	2960802
16	0.0	4.3	0.0	chr4	123505553	123505575	(66708980)	+	(TGA)n	Simple_repeat	1	24	(0)	2964102
20	0.0	0.0	0.0	chr4	123505599	123505620	(66708935)	+	(A)n	Simple_repeat	1	22	(0)	2964103
17	25.9	0.0	1.9	chr4	123505639	123505690	(66708865)	+	(CGC)n	Simple_repeat	1	52	(0)	2964104
9899	6.2	1.2	7.2	chr4	123684306	123685775	(66528780)	+	SVA_B	Retroposon/SVA	4	1383	(0)	2964378
6924	6.6	2.7	0.0	chr4	132308349	132309221	(57905334)	C	MER11D	LTR/ERVK	(0)	897	1	2975706
7051	5.2	2.6	1.0	chr4	144542550	144543432	(45671123)	+	MER11D	LTR/ERVK	1	897	(0)	2991714
7143	8.1	1.3	6.1	chr4	145693024	145694750	(44519805)	C	SVA_F	Retroposon/SVA	(0)	1375	421	2993283
19	30.5	0.0	5.2	chr4	148442401	148442497	(41772058)	+	G-rich	Low_complexity	1	97	(0)	2997124
9376	5.2	0.3	18.4	chr4	150963150	150964838	(39249717)	+	SVA_B	Retroposon/SVA	1	1382	(1)	3000521
202	28.9	7.1	0.0	chr4	151167591	151167642	(39046913)	C	L2a	LINE/L2	(1)	3425	3370	3000991
1275	13.7	0.4	1.0	chr4	151167643	151167921	(39046634)	+	SVA_F	Retroposon/SVA	421	711	(664)	3000992
6826	7.3	1.9	4.8	chr4	152865882	152867553	(37347002)	C	SVA_D	Retroposon/SVA	(7)	1376	1	3003685
301	29.8	3.5	0.0	chr4	155689838	155689921	(34524634)	+	LTR104_Mam	LTR/Gypsy	109	195	(1314)	3007796
16	18.9	0.0	0.0	chr4	156971396	156971425	(33243130)	+	(C)n	Simple_repeat	1	30	(0)	3009494
17	22.0	5.8	4.3	chr4	156971449	156971535	(33243020)	+	(GGCGCC)n	Simple_repeat	1	92	(0)	3009495
6481	10.8	16.3	2.4	chr4	158759179	158760332	(31454223)	+	SVA_F	Retroposon/SVA	30	1375	(0)	3011867
10179	3.4	0.4	14.3	chr4	158881409	158883015	(31331540)	+	SVA_C	Retroposon/SVA	2	1384	(0)	3012049
3258	17.0	7.0	2.8	chr4	159420077	159420719	(30793836)	+	MER61F	LTR/ERV1	5	676	(0)	3012872
6972	9.4	16.7	0.3	chr4	159420727	159421774	(30792781)	+	LTR12D	LTR/ERV1	1	1254	(0)	3012873
6310	8.8	5.5	5.5	chr4	159938369	159940647	(30273908)	C	SVA_F	Retroposon/SVA	(8)	1367	38	3013538
371	13.6	0.7	1.7	chr4	162604920	162605006	(27609549)	+	SVA_F	Retroposon/SVA	421	566	(818)	3016955
277	20.3	1.2	6.0	chr4	162605101	162605184	(27609371)	+	MER4B-int	LTR/ERV1	5378	5457	(1461)	3016956
4586	8.8	2.6	1.7	chr4	164752245	164753249	(25461306)	+	MER11A	LTR/ERVK	4	1266	(0)	3019799
766	19.9	0.7	2.0	chr4	165113332	165113482	(25101073)	C	FRAM	SINE/Alu	(24)	152	4	3020553
9664	4.6	1.2	10.9	chr4	169678415	169679948	(20534607)	C	SVA_B	Retroposon/SVA	(0)	1383	1	3026680
8365	3.5	0.3	26.0	chr4	170045722	170047562	(20166993)	+	SVA_C	Retroposon/SVA	1	1367	(17)	3027284
6491	5.4	0.5	10.8	chr4	173183492	173184653	(17029902)	C	SVA_B	Retroposon/SVA	(340)	1043	2	3031262
12144	19.1	5.8	3.8	chr4	173379785	173383574	(16830981)	C	L1MB5	LINE/L1	(3)	6171	2301	3031528
4853	3.6	0.0	6.5	chr4	174983876	174984522	(15230033)	C	SVA_A	Retroposon/SVA	(2)	1385	781	3033657
807	27.2	2.6	3.6	chr4	174984523	174984831	(15229724)	C	HERVK9-int	LTR/ERVK	(531)	6903	6598	3033656
10649	2.8	0.0	13.3	chr4	183040120	183041715	(7172840)	C	SVA_D	Retroposon/SVA	(2)	1384	2	3044282
638	30.2	7.3	7.5	chr4	186200343	186200729	(4013826)	C	L2a	LINE/L2	(1)	3425	3040	3049342
14	15.2	2.0	7.7	chr4	186723601	186723651	(3490904)	+	(CCGCCCG)n	Simple_repeat	1	52	(0)	3050036
398	23.5	0.7	2.2	chr4	190022652	190022790	(191765)	+	LSAU	Satellite	2	138	(360)	3054526
7790	7.7	1.0	1.3	chr4	190106259	190107263	(107292)	C	LTR5B	LTR/ERVK	(0)	1002	1	3054628
2295	15.6	0.6	1.2	chr4	190175256	190175756	(38799)	C	LSAU	Satellite	(0)	498	1	3054650
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
13	13.6	6.8	4.3	chr5	6633477	6633520	(174904739)	+	(GCC)n	Simple_repeat	1	47	(0)	3062115
745	16.7	0.9	0.0	chr5	10125898	10126011	(171412248)	+	AluJr	SINE/Alu	2	116	(196)	3066367
1165	24.5	9.8	3.2	chr5	10126208	10126642	(171411617)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	1	3066368
222	29.9	4.0	9.3	chr5	10567337	10567443	(170970816)	C	L2a	LINE/L2	(15)	3372	3272	3067146
235	19.6	24.0	5.1	chr5	10567669	10567805	(170970454)	C	L2a	LINE/L2	(240)	3186	3014	3067146
19	7.3	0.0	0.0	chr5	14011855	14011883	(167526376)	+	(GCGCG)n	Simple_repeat	1	29	(0)	3071610
30	18.2	0.0	0.0	chr5	17217607	17217664	(164320595)	+	(GGC)n	Simple_repeat	1	58	(0)	3076467
16	20.9	2.9	5.7	chr5	17217831	17217898	(164320361)	+	(GCCCC)n	Simple_repeat	1	70	(0)	3076468
8690	2.9	0.4	22.8	chr5	18308962	18310723	(163227536)	+	SVA_D	Retroposon/SVA	1	1367	(19)	3077901
15	12.0	0.0	3.3	chr5	28929194	28929223	(152609036)	+	GA-rich	Low_complexity	1	30	(0)	3091758
15	13.9	3.1	0.0	chr5	28929289	28929320	(152608939)	+	(TGGT)n	Simple_repeat	1	33	(0)	3091759
836	15.0	5.0	0.8	chr5	28929321	28929453	(152608806)	C	AluSz	SINE/Alu	(173)	139	1	3091760
1227	8.2	4.5	0.8	chr5	28929482	28929715	(152608544)	C	SVA_F	Retroposon/SVA	(689)	686	444	3091761
2666	4.7	1.2	2.0	chr5	28929713	28930060	(152608199)	+	LTR7B	LTR/ERV1	82	426	(38)	3091762
602	32.2	8.8	6.9	chr5	31998271	31998631	(149539628)	+	MamGypLTR1a	LTR/Gypsy	52	408	(376)	3095987
1523	10.2	6.1	0.0	chr5	31998632	31998847	(149539412)	C	MER30	DNA/hAT-Charlie	(0)	230	1	3095988
8101	3.0	0.6	27.3	chr5	32141607	32143467	(149394792)	+	SVA_D	Retroposon/SVA	26	1386	(0)	3096245
7397	3.4	2.8	0.2	chr5	34421366	34422239	(147116020)	C	MER11D	LTR/ERVK	(0)	897	1	3099775
6409	8.4	4.9	0.0	chr5	34460958	34461810	(147076449)	C	MER11D	LTR/ERVK	(0)	897	1	3099824
6896	5.7	2.1	1.6	chr5	37483102	37484595	(144053664)	C	SVA_D	Retroposon/SVA	(0)	1386	6	3104630
8074	3.8	0.3	34.2	chr5	38861118	38863213	(142675046)	C	SVA_D	Retroposon/SVA	(2)	1384	1	3106798
5340	8.3	2.4	6.9	chr5	39333623	39334995	(142203264)	+	SVA_D	Retroposon/SVA	35	1047	(339)	3107415
6684	7.9	3.1	1.7	chr5	40722207	40723453	(140814806)	+	SVA_B	Retroposon/SVA	95	1383	(0)	3109311
4608	9.8	5.4	5.9	chr5	40864387	40865439	(140672820)	+	MER11A	LTR/ERVK	1	1266	(0)	3109580
6953	6.9	2.6	0.0	chr5	42834271	42835144	(138703115)	C	MER11D	LTR/ERVK	(0)	897	1	3112141
5404	11.0	3.3	1.5	chr5	42835145	42835888	(138702371)	+	L1PREC2	LINE/L1	5409	6160	(0)	3112140
4124	5.6	0.2	0.0	chr5	42931194	42931678	(138606581)	+	MER11D	LTR/ERVK	1	486	(411)	3112281
26315	5.7	0.2	0.8	chr5	42931681	42937866	(138600393)	+	L1PA4	LINE/L1	1	6144	(11)	3112282
5754	5.5	0.6	17.1	chr5	42978716	42979809	(138558450)	+	SVA_B	Retroposon/SVA	48	959	(424)	3112353
8188	5.7	1.7	16.3	chr5	43510427	43512039	(138026220)	+	SVA_A	Retroposon/SVA	15	1387	(0)	3113199
10312	4.7	1.3	2.7	chr5	43665241	43666629	(137871630)	C	SVA_B	Retroposon/SVA	(7)	1376	8	3113431
7728	8.4	0.2	19.3	chr5	50607479	50609138	(130929121)	+	SVA_A	Retroposon/SVA	46	1387	(0)	3116712
6082	8.5	3.8	7.1	chr5	50773838	50775578	(130762681)	C	SVA_B	Retroposon/SVA	(0)	1387	28	3116937
10252	4.5	0.6	8.6	chr5	54380742	54382247	(127156012)	+	SVA_D	Retroposon/SVA	1	1384	(2)	3121626
1136	17.6	21.4	0.6	chr5	55146086	55146422	(126391837)	+	MER57C2	LTR/ERV1	5	430	(4)	3122766
2943	8.8	4.8	9.5	chr5	55696411	55697281	(125840978)	C	SVA_D	Retroposon/SVA	(517)	870	74	3123717
8125	2.9	0.0	34.1	chr5	56013918	56016020	(125522239)	C	SVA_D	Retroposon/SVA	(0)	1386	1	3124269
13	8.7	0.0	14.0	chr5	56909853	56909902	(124628357)	+	G-rich	Low_complexity	1	50	(0)	3125753
9255	6.9	4.7	1.5	chr5	57517902	57519226	(124019033)	C	SVA_A	Retroposon/SVA	(0)	1387	19	3126887
6175	10.5	3.1	53.7	chr5	58562497	58565202	(122973057)	C	SVA_A	Retroposon/SVA	(3)	1384	7	3128288
2032	11.8	6.5	81.2	chr5	64225270	64225732	(117312527)	+	SVA_A	Retroposon/SVA	425	872	(515)	3136180
6519	6.7	4.5	4.0	chr5	64225700	64226678	(117311581)	+	SVA_A	Retroposon/SVA	404	1387	(0)	3136181
9742	4.3	0.4	5.3	chr5	65957241	65958672	(115579587)	C	SVA_C	Retroposon/SVA	(23)	1361	1	3138742
866	14.8	0.8	0.0	chr5	69220375	69220496	(112317763)	+	AluJo	SINE/Alu	2	124	(188)	3143539
5063	4.9	4.4	2.9	chr5	69220501	69221191	(112317068)	+	SVA_A	Retroposon/SVA	676	1377	(10)	3143540
375	30.0	15.0	3.2	chr5	69502930	69503146	(112035113)	+	MIRb	SINE/MIR	14	260	(8)	3144202
194	23.8	0.0	0.0	chr5	69503546	69503587	(112034672)	+	L2a	LINE/L2	3380	3421	(5)	3144203
6795	4.8	0.1	32.0	chr5	71793324	71795258	(109743001)	C	SVA_A	Retroposon/SVA	(13)	1374	60	3148079
243	29.0	7.4	0.0	chr5	75053862	75053961	(106484298)	C	MIR3	SINE/MIR	(59)	149	42	3152997
5547	9.1	3.2	6.7	chr5	75269508	75271127	(106267132)	+	SVA_D	Retroposon/SVA	2	870	(517)	3153277
425	23.5	19.0	1.2	chr5	78546356	78546578	(102991681)	+	MIR	SINE/MIR	2	267	(1)	3158245
19	13.0	0.0	6.2	chr5	79236341	79236388	(102301871)	+	(CGCGCGG)n	Simple_repeat	1	48	(0)	3159398
7257	4.8	2.6	0.0	chr5	79706001	79706874	(101831385)	C	MER11D	LTR/ERVK	(0)	897	1	3160253
4967	5.3	2.0	2.9	chr5	83437816	83438481	(98099778)	+	SVA_A	Retroposon/SVA	727	1386	(1)	3165969
20	32.6	3.2	1.0	chr5	83473435	83473527	(98064732)	+	(TC)n	Simple_repeat	1	96	(0)	3166014
2978	8.2	1.2	0.0	chr5	88376448	88376863	(93161396)	+	L1P1	LINE/L1	4912	5332	(814)	3172242
677	15.8	2.2	2.9	chr5	88376864	88377000	(93161259)	+	SVA_F	Retroposon/SVA	477	612	(763)	3172243
272	27.1	0.0	0.0	chr5	88377001	88377059	(93161200)	C	HAL1	LINE/L1	(2448)	59	1	3172240
2706	7.7	20.4	0.2	chr5	91342906	91343412	(90194847)	C	SVA_B	Retroposon/SVA	(427)	956	321	3176104
9060	5.4	0.8	16.2	chr5	93985398	93987034	(87551225)	+	SVA_B	Retroposon/SVA	1	1383	(0)	3179302
230	22.9	1.4	5.4	chr5	95555504	95555577	(85982682)	C	Charlie9	DNA/hAT-Charlie	(7)	2750	2680	3181311
7596	10.6	8.1	2.7	chr5	100785193	100786438	(80751821)	+	SVA_F	Retroposon/SVA	58	1375	(0)	3188194
1675	12.5	0.9	0.4	chr5	106535533	106535764	(75002495)	C	AluSc	SINE/Alu	(27)	282	50	3195261
6181	8.9	3.0	1.7	chr5	109832187	109833718	(71704541)	C	SVA_B	Retroposon/SVA	(13)	1370	4	3199522
15	24.9	0.0	0.0	chr5	111758220	111758253	(69780006)	+	(CA)n	Simple_repeat	1	34	(0)	3201828
234	30.9	10.4	3.7	chr5	111967367	111967581	(69570678)	+	L2	LINE/L2	2756	2986	(433)	3202145
583	12.8	0.0	2.9	chr5	111967609	111967739	(69570520)	+	SVA_F	Retroposon/SVA	421	592	(783)	3202146
8083	8.1	7.3	1.3	chr5	112360274	112361538	(69176721)	+	SVA_F	Retroposon/SVA	29	1375	(0)	3202671
521	15.7	4.3	8.8	chr5	113513247	113513393	(68024866)	C	MER53	DNA/hAT	(52)	141	2	3204397
387	32.6	1.5	0.0	chr5	113513394	113513522	(68024737)	+	L2a	LINE/L2	3296	3426	(0)	3204398
6694	7.7	2.8	0.3	chr5	114142955	114143829	(67394430)	C	MER11D	LTR/ERVK	(0)	897	1	3205235
16	11.1	0.0	0.0	chr5	116085200	116085228	(65453031)	+	(GGTGG)n	Simple_repeat	1	29	(0)	3207708
563	28.1	9.9	2.6	chr5	116085485	116085794	(65452465)	+	MER113	DNA/hAT-Charlie	152	486	(35)	3207709
15	16.9	0.0	0.0	chr5	116574585	116574617	(64963642)	+	G-rich	Low_complexity	1	33	(0)	3208281
3652	10.8	8.2	2.3	chr5	119450491	119451542	(62086717)	C	MER11A	LTR/ERVK	(4)	1232	1	3212324
10227	4.5	4.2	2.6	chr5	120147386	120148746	(61389513)	+	SVA_C	Retroposon/SVA	1	1384	(0)	3213180
14	24.7	0.0	2.2	chr5	120464396	120464440	(61073819)	+	(GCGGCA)n	Simple_repeat	1	45	(0)	3213552
388	29.9	16.3	1.6	chr5	122604292	122604546	(58933713)	+	L2c	LINE/L2	3084	3383	(4)	3216113
310	30.8	1.8	1.4	chr5	124221259	124221435	(57316824)	C	L1MC5a	LINE/L1	(304)	5820	5707	3218377
10620	2.9	0.1	13.2	chr5	132982392	132983987	(48554272)	C	SVA_D	Retroposon/SVA	(0)	1386	1	3230282
9240	6.3	0.3	19.2	chr5	133857174	133858883	(47679376)	C	SVA_A	Retroposon/SVA	(0)	1387	3	3231483
10788	3.1	0.7	5.5	chr5	135408539	135409983	(46128276)	+	SVA_C	Retroposon/SVA	1	1375	(9)	3234252
225	25.4	11.4	1.5	chr5	135440177	135440325	(46097934)	+	MIR1_Amn	SINE/MIR	79	245	(23)	3234294
196	30.2	0.0	0.0	chr5	135466116	135466168	(46072091)	C	MamRTE1	LINE/RTE-BovB	(2631)	1181	1129	3234330
17	13.0	0.0	2.8	chr5	135930280	135930315	(45607944)	+	G-rich	Low_complexity	1	36	(0)	3234978
1126	7.5	0.0	0.0	chr5	138069898	138070030	(43468229)	+	AluSp	SINE/Alu	1	133	(180)	3238051
6578	7.1	1.4	6.0	chr5	138070035	138071356	(43466903)	+	SVA_D	Retroposon/SVA	421	1381	(5)	3238052
576	28.6	5.3	2.5	chr5	138438584	138438784	(43099475)	+	MIRb	SINE/MIR	38	244	(24)	3238878
10596	3.2	0.6	8.3	chr5	139111826	139113290	(42424969)	+	SVA_C	Retroposon/SVA	12	1361	(23)	3240100
8404	4.3	0.4	26.8	chr5	139169852	139171717	(42366542)	+	SVA_C	Retroposon/SVA	14	1384	(0)	3240212
7085	6.2	2.6	3.4	chr5	139223878	139225114	(42313145)	+	SVA_D	Retroposon/SVA	24	1194	(192)	3240334
24	17.4	7.6	1.2	chr5	140042801	140042879	(41495380)	+	(GCGGCT)n	Simple_repeat	1	85	(0)	3241897
64	5.7	2.1	2.1	chr5	140042904	140042998	(41495261)	+	(TGC)n	Simple_repeat	1	97	(0)	3241898
17	13.7	0.0	0.0	chr5	140043211	140043266	(41494993)	+	(GCAGC)n	Simple_repeat	1	56	(0)	3241899
18	0.0	0.0	3.9	chr5	140107832	140107857	(41430402)	+	(GCG)n	Simple_repeat	1	26	(0)	3242039
5698	8.1	3.1	6.5	chr5	140426539	140428681	(41109578)	C	SVA_D	Retroposon/SVA	(23)	1363	1	3242614
308	32.7	6.6	1.3	chr5	140556770	140556927	(40981332)	C	L2b	LINE/L2	(971)	2448	2282	3242811
425	31.9	5.8	0.6	chr5	141968523	141968686	(39569573)	+	MIR	SINE/MIR	78	250	(12)	3244970
247	17.4	6.8	4.2	chr5	141968852	141968923	(39569336)	+	MER5A	DNA/hAT-Charlie	27	100	(89)	3244973
13	11.5	12.2	1.8	chr5	142357141	142357189	(39181070)	+	(TCCGCC)n	Simple_repeat	1	55	(0)	3245797
235	28.1	4.3	6.9	chr5	142357425	142357569	(39180690)	C	MIRb	SINE/MIR	(42)	226	86	3245798
343	27.2	1.0	0.2	chr5	142611336	142611432	(38926827)	C	MIRc	SINE/MIR	(87)	181	87	3246344
17	25.0	4.3	5.1	chr5	149358053	149358146	(32180113)	+	(CCG)n	Simple_repeat	1	98	(0)	3257561
256	26.5	3.8	4.7	chr5	149358613	149358719	(32179540)	C	L2b	LINE/L2	(188)	3187	3082	3257562
19	19.9	3.9	0.0	chr5	149731600	149731651	(31806608)	+	G-rich	Low_complexity	1	54	(0)	3258411
603	26.4	2.0	8.9	chr5	150410979	150411254	(31127005)	+	MIR	SINE/MIR	3	261	(1)	3259869
220	27.8	3.4	1.2	chr5	150411228	150411311	(31126948)	C	MIR3	SINE/MIR	(94)	174	84	3259870
237	30.9	3.4	4.5	chr5	150459212	150459374	(31078885)	C	MIRb	SINE/MIR	(57)	211	49	3259993
1139	30.6	10.5	3.2	chr5	150459494	150460012	(31078247)	C	L2a	LINE/L2	(1)	3425	2877	3259994
1829	10.4	11.0	0.7	chr5	150460013	150460039	(31078220)	C	AluSz	SINE/Alu	(2)	310	285	3259995
42	0.0	0.0	0.0	chr5	150460040	150460077	(31078182)	+	(TTA)n	Simple_repeat	1	38	(0)	3259996
14	12.7	0.0	0.0	chr5	150656530	150656555	(30881704)	+	(CCG)n	Simple_repeat	1	26	(0)	3260455
276	31.0	7.9	2.8	chr5	150778286	150778464	(30759795)	C	MIRb	SINE/MIR	(56)	212	24	3260678
267	33.1	3.1	2.5	chr5	150778484	150778644	(30759615)	C	MIR3	SINE/MIR	(25)	183	22	3260679
12	11.1	3.2	3.1	chr5	150778679	150778709	(30759550)	+	(GGAGCT)n	Simple_repeat	1	32	(0)	3260680
10150	2.9	0.2	15.0	chr5	152479242	152480866	(29057393)	C	SVA_C	Retroposon/SVA	(0)	1384	1	3263838
2422	7.7	0.0	0.0	chr5	154610037	154610335	(26927924)	+	AluSc	SINE/Alu	1	299	(10)	3267598
278	29.6	0.0	2.4	chr5	154610336	154610354	(26927905)	+	MIRc	SINE/MIR	112	129	(139)	3267597
1074	21.5	0.6	3.3	chr5	155325205	155325486	(26212773)	C	SVA_F	Retroposon/SVA	(519)	856	422	3269033
292	18.0	0.0	0.0	chr5	155325496	155325552	(26212707)	C	MIRc	SINE/MIR	(110)	158	101	3269032
10502	5.5	1.1	2.5	chr5	156939948	156941333	(24596926)	+	SVA_B	Retroposon/SVA	17	1383	(0)	3271670
15253	17.8	4.4	1.5	chr5	157401073	157401720	(24136539)	+	L1MA4A	LINE/L1	718	1353	(6213)	3272628
1660	21.6	1.6	1.3	chr5	157401721	157402021	(24136238)	+	AluJr4	SINE/Alu	5	306	(6)	3272629
6718	6.3	1.4	6.9	chr5	157418939	157420653	(24117606)	+	SVA_D	Retroposon/SVA	19	1386	(0)	3272641
295	20.8	2.0	3.0	chr5	157511528	157511626	(24026633)	+	UCON37	Unknown	42	139	(4)	3272815
393	35.0	8.2	5.1	chr5	158630321	158630934	(22907325)	C	L2a	LINE/L2	(35)	3352	2654	3274917
6544	6.7	2.6	1.5	chr5	163583058	163584614	(17953645)	C	SVA_B	Retroposon/SVA	(0)	1383	12	3282799
516	33.2	8.6	4.5	chr5	164543747	164544074	(16994185)	C	LTR83	LTR/ERVL	(2)	778	430	3284136
6787	5.7	4.3	0.0	chr5	164544075	164544932	(16993327)	+	MER11D	LTR/ERVK	1	897	(0)	3284137
16	15.4	4.4	2.1	chr5	169300641	169300685	(12237574)	+	(CGCCAG)n	Simple_repeat	1	47	(0)	3291587
12	19.1	2.1	6.2	chr5	169301281	169301327	(12236932)	+	GA-rich	Low_complexity	1	48	(0)	3291588
21	21.6	0.0	0.0	chr5	169583476	169583518	(11954741)	+	A-rich	Low_complexity	1	43	(0)	3292030
31	0.0	0.0	0.0	chr5	172834268	172834296	(8703963)	+	(GGCGAGT)n	Simple_repeat	1	29	(0)	3298313
17	17.7	2.1	4.1	chr5	172834301	172834348	(8703911)	+	(GGC)n	Simple_repeat	1	49	(0)	3298314
3062	18.2	2.8	2.5	chr5	176214270	176214491	(5323768)	+	L1MB8	LINE/L1	4769	4995	(1151)	3304836
5913	6.7	4.1	2.5	chr5	176214493	176215360	(5322899)	+	SVA_A	Retroposon/SVA	499	1380	(7)	3304838
7372	6.2	2.2	5.2	chr5	176251582	176253159	(5285100)	C	SVA_D	Retroposon/SVA	(0)	1387	24	3304896
5413	8.4	1.5	8.2	chr5	176304241	176305945	(5232314)	+	SVA_F	Retroposon/SVA	72	866	(518)	3304974
9112	3.2	0.5	22.1	chr5	176433061	176434829	(5103430)	+	SVA_D	Retroposon/SVA	1	1386	(0)	3305241
366	15.1	1.8	0.0	chr5	176945312	176945380	(4592879)	+	FLAM_C	SINE/Alu	1	53	(80)	3306262
7757	3.6	0.2	0.2	chr5	176945381	176946277	(4591982)	+	MER11D	LTR/ERVK	1	897	(0)	3306263
6522	7.6	3.6	5.6	chr5	177695268	177696445	(3841814)	C	SVA_A	Retroposon/SVA	(7)	1380	403	3307870
3331	17.6	2.8	2.8	chr5	177696447	177696668	(3841591)	C	L1MB8	LINE/L1	(1151)	4995	4769	3307863
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
336	24.5	3.3	3.3	chr5	178671664	178671783	(2866476)	+	L1MEg2	LINE/L1	434	531	(5921)	3309600
363	29.5	2.8	0.0	chr5	178671834	178671938	(2866321)	+	L1MEg2	LINE/L1	418	525	(5927)	3309601
647	35.0	7.5	2.6	chr5	178671955	178672763	(2865496)	+	L1MEg2	LINE/L1	591	986	(5466)	3309601
927	24.3	10.5	2.4	chr5	179170937	179171223	(2367036)	+	MER5C	DNA/hAT-Charlie	1	313	(0)	3310447
12	15.3	6.4	4.0	chr5	179171369	179171415	(2366844)	+	(CCTAGCC)n	Simple_repeat	1	50	(0)	3310448
10116	3.6	5.4	0.1	chr5	179834413	179835696	(1702563)	C	SVA_D	Retroposon/SVA	(0)	1386	31	3311658
2176	7.3	2.7	3.6	chr5	180090667	180090969	(1447290)	C	AluSz	SINE/Alu	(12)	300	1	3312066
10240	4.3	1.0	6.8	chr5	180530567	180532000	(1006259)	C	SVA_B	Retroposon/SVA	(0)	1383	34	3312855
620	19.6	10.7	4.8	chr5	181063530	181063656	(474603)	C	MER63A	DNA/hAT-Blackjack	(39)	171	34	3313592
1049	23.3	9.6	10.2	chr5	181063788	181064006	(474253)	C	MLT1A1	LTR/ERVL-MaLR	(0)	408	176	3313594
670	1.4	0.0	0.0	chr5	181188416	181188488	(349771)	C	tRNA-Val-GTY	tRNA	(3)	73	1	3313824
638	0.0	1.4	0.0	chr5	181191687	181191758	(346501)	C	tRNA-Thr-ACA	tRNA	(3)	73	1	3313826
13	9.3	5.3	5.0	chr5	181191960	181191997	(346262)	+	G-rich	Low_complexity	1	40	(0)	3313827
15	25.2	4.3	2.8	chr6	2245428	2245498	(168560481)	+	(GGCG)n	Simple_repeat	1	72	(0)	3317164
19	11.6	0.0	0.0	chr6	2765183	2765210	(168040769)	+	(C)n	Simple_repeat	1	28	(0)	3317888
921	9.8	5.0	0.0	chr6	7434023	7434154	(163371825)	C	MER85	DNA/PiggyBac	(0)	139	1	3325138
1789	17.3	2.3	2.3	chr6	7434210	7434515	(163371464)	C	AluJb	SINE/Alu	(6)	306	1	3325139
4805	6.1	2.6	5.8	chr6	10853429	10854481	(159951498)	+	MER11A	LTR/ERVK	1	1266	(0)	3330328
12	16.3	7.0	2.2	chr6	13795464	13795506	(157010473)	+	(TAATATT)n	Simple_repeat	1	46	(0)	3334928
40	17.6	1.1	3.1	chr6	14117549	14117643	(156688336)	+	G-rich	Low_complexity	1	96	(0)	3335494
443	26.0	4.9	2.4	chr6	16636167	16636323	(154169656)	C	MIR3	SINE/MIR	(15)	193	44	3339824
631	10.8	1.2	0.0	chr6	23855433	23855515	(146950464)	+	AluSc	SINE/Alu	1	84	(225)	3351077
1736	19.1	4.1	4.8	chr6	23855516	23856256	(146949723)	+	SVA_F	Retroposon/SVA	380	861	(514)	3351078
1613	20.1	3.7	2.1	chr6	23855882	23856281	(146949698)	+	SVA_A	Retroposon/SVA	432	817	(570)	3351078
3424	9.2	1.5	1.8	chr6	25157506	25158189	(145647790)	+	MER11A	LTR/ERVK	1	752	(484)	3353176
24713	5.9	0.3	0.1	chr6	25158198	25164309	(145641670)	+	L1PA5	LINE/L1	11	6136	(18)	3353177
10523	4.8	0.6	6.5	chr6	25585548	25587018	(145218961)	C	SVA_B	Retroposon/SVA	(0)	1383	1	3353827
5755	3.7	1.1	0.3	chr6	27529371	27530073	(143275906)	C	SVA_B	Retroposon/SVA	(0)	1383	675	3357058
2848	16.8	2.3	3.8	chr6	27530074	27530326	(143275653)	C	L1MA9	LINE/L1	(1245)	4895	4654	3357055
9964	3.4	0.6	10.4	chr6	27652930	27654404	(143151575)	+	SVA_B	Retroposon/SVA	55	1382	(1)	3357305
5817	8.0	4.2	6.0	chr6	27826626	27828514	(142977465)	C	SVA_D	Retroposon/SVA	(450)	936	8	3357662
1107	23.2	11.8	1.6	chr6	28446530	28446892	(142359087)	+	L1ME3A	LINE/L1	5486	5890	(283)	3358631
9699	4.8	0.4	14.9	chr6	28501515	28503131	(142302848)	+	SVA_B	Retroposon/SVA	2	1382	(1)	3358732
15	19.7	0.0	0.0	chr6	28633308	28633336	(142172643)	+	(T)n	Simple_repeat	1	29	(0)	3358947
7434	11.2	10.9	3.0	chr6	30221504	30222724	(140583255)	C	SVA_F	Retroposon/SVA	(17)	1358	30	3361289
7664	6.3	2.6	1.3	chr6	30474490	30475999	(140329980)	+	SVA_D	Retroposon/SVA	32	1387	(0)	3361650
9197	6.0	1.4	0.2	chr6	30498160	30499333	(140306646)	C	SVA_B	Retroposon/SVA	(0)	1383	195	3361688
10924	3.8	0.7	5.5	chr6	31066603	31068056	(139737923)	C	SVA_C	Retroposon/SVA	(0)	1384	2	3362735
12	16.1	2.6	5.0	chr6	31442131	31442169	(139363810)	+	(GCCCCT)n	Simple_repeat	1	40	(0)	3363325
5581	8.1	2.4	3.1	chr6	31975656	31977038	(138828941)	C	SVA_D	Retroposon/SVA	(377)	1009	52	3364267
8441	2.4	1.6	29.5	chr6	32384190	32386122	(138419857)	C	SVA_D	Retroposon/SVA	(2)	1384	1	3364826
16	15.5	0.0	0.0	chr6	33298454	33298483	(137507496)	+	(CCT)n	Simple_repeat	1	30	(0)	3366145
4635	4.4	1.5	2.8	chr6	33357412	33358020	(137447959)	C	SVA_A	Retroposon/SVA	(13)	1374	774	3366276
470	30.6	1.5	9.9	chr6	33358021	33358119	(137447860)	+	MIRb	SINE/MIR	64	156	(112)	3366277
2037	14.9	2.3	0.7	chr6	33358120	33358421	(137447558)	+	AluJr	SINE/Alu	1	307	(5)	3366278
10457	2.7	0.4	17.1	chr6	33831938	33833602	(136972377)	C	SVA_D	Retroposon/SVA	(0)	1386	1	3367194
213	23.4	0.0	2.1	chr6	35318035	35318082	(135487897)	+	MIRc	SINE/MIR	122	168	(100)	3370117
11	13.2	5.7	2.7	chr6	35496605	35496639	(135309340)	+	(GGACAGG)n	Simple_repeat	1	37	(0)	3370489
16	15.9	0.0	0.0	chr6	35496685	35496712	(135309267)	+	G-rich	Low_complexity	1	28	(0)	3370490
23	24.1	2.7	1.3	chr6	35497087	35497161	(135308818)	+	G-rich	Low_complexity	1	77	(0)	3370491
14	29.1	2.5	3.7	chr6	36986351	36986430	(133819549)	+	G-rich	Low_complexity	1	82	(0)	3373670
3879	12.2	7.2	6.0	chr6	38699152	38700211	(132105768)	+	MER11A	LTR/ERVK	1	1067	(4)	3376816
1088	24.7	3.8	6.1	chr6	38710596	38710923	(132095056)	+	MER11D	LTR/ERVK	103	422	(475)	3376841
565	23.7	11.0	2.8	chr6	38711067	38711283	(132094696)	+	MER11D	LTR/ERVK	646	882	(15)	3376841
451	16.5	0.0	0.9	chr6	41872359	41872458	(128933521)	+	SVA_F	Retroposon/SVA	511	592	(783)	3381989
10394	4.7	1.0	5.8	chr6	42686078	42687510	(128118469)	C	SVA_B	Retroposon/SVA	(1)	1382	19	3383792
13	14.9	5.1	2.4	chr6	45377470	45377508	(125428471)	+	(CAGCC)n	Simple_repeat	1	41	(0)	3388537
14	13.7	3.1	0.0	chr6	45377643	45377674	(125428305)	+	G-rich	Low_complexity	1	33	(0)	3388538
8683	7.5	5.0	1.1	chr6	47443358	47444661	(123361318)	C	SVA_B	Retroposon/SVA	(0)	1383	26	3391764
10153	5.0	0.7	4.3	chr6	48370665	48372097	(122433882)	C	SVA_D	Retroposon/SVA	(1)	1385	4	3393068
6826	6.0	2.9	2.0	chr6	49508329	49508842	(121297137)	C	MER11D	LTR/ERVK	(384)	513	2	3394448
8706	6.6	1.4	18.2	chr6	52824723	52826369	(117979610)	+	SVA_A	Retroposon/SVA	22	1387	(0)	3399136
463	30.8	2.0	1.4	chr6	52882636	52882783	(117923196)	+	L2b	LINE/L2	3219	3367	(8)	3399199
251	38.0	2.0	0.0	chr6	53307099	53307198	(117498781)	C	L2b	LINE/L2	(0)	3375	3274	3399963
10470	2.8	0.6	10.5	chr6	56823986	56825519	(113980460)	+	SVA_D	Retroposon/SVA	6	1386	(0)	3404668
4536	18.1	0.5	3.5	chr6	56998982	56999851	(113806128)	+	L1PA15-16	LINE/L1	705	1548	(5305)	3404975
740	11.4	5.0	0.2	chr6	56999852	56999999	(113805980)	+	SVA_F	Retroposon/SVA	468	745	(642)	3404976
4403	3.0	3.6	2.9	chr6	57000001	57000585	(113805394)	+	SVA_A	Retroposon/SVA	797	1385	(2)	3404977
4403	10.6	5.2	48.6	chr6	57310241	57312009	(113493970)	C	SVA_A	Retroposon/SVA	(190)	1197	54	3405437
267	13.4	13.0	1.5	chr6	57853697	57853764	(112952215)	C	L2a	LINE/L2	(1)	3425	3349	3406178
6862	7.0	0.4	27.5	chr6	63163335	63165221	(107640758)	+	SVA_A	Retroposon/SVA	15	1387	(0)	3410081
1700	18.7	4.2	3.8	chr6	63228026	63229030	(107576949)	C	SVA_F	Retroposon/SVA	(518)	857	421	3410168
644	9.6	1.2	0.0	chr6	63229031	63229113	(107576866)	C	AluSc	SINE/Alu	(225)	84	1	3410169
7654	4.1	0.0	0.0	chr6	66482360	66483256	(104322723)	C	MER11D	LTR/ERVK	(0)	897	1	3414366
9304	8.2	0.6	8.3	chr6	69121006	69122509	(101683470)	C	SVA_A	Retroposon/SVA	(0)	1387	1	3417552
6417	8.3	2.0	4.5	chr6	69431792	69432765	(101373214)	C	SVA_A	Retroposon/SVA	(3)	1384	436	3417909
5309	12.6	4.5	56.2	chr6	69432809	69434107	(101371872)	C	SVA_A	Retroposon/SVA	(515)	872	3	3417909
11013	2.8	7.9	0.7	chr6	73205112	73206394	(97599585)	C	SVA_C	Retroposon/SVA	(0)	1384	1	3422880
6588	5.4	3.8	0.7	chr6	73914310	73915224	(96890755)	C	SVA_D	Retroposon/SVA	(11)	1375	430	3424386
9735	5.0	0.2	8.0	chr6	74254522	74255963	(96550016)	C	SVA_C	Retroposon/SVA	(8)	1376	48	3424783
18	10.8	0.0	0.0	chr6	79078201	79078230	(91727749)	+	(GGA)n	Simple_repeat	1	30	(0)	3430771
13533	20.2	4.1	1.5	chr6	81438791	81440741	(89365238)	C	L1MA4A	LINE/L1	(3530)	3315	1328	3433767
7111	5.7	2.6	0.0	chr6	81440742	81441615	(89364364)	+	MER11D	LTR/ERVK	1	897	(0)	3433774
6534	6.6	0.0	0.0	chr6	83358054	83358868	(87447111)	+	HERVL-int	LTR/ERVL	1	815	(4839)	3436409
16	10.0	0.0	0.0	chr6	83358869	83358890	(87447089)	+	(T)n	Simple_repeat	1	22	(0)	3436412
13	24.2	4.1	0.0	chr6	83358902	83358950	(87447029)	+	A-rich	Low_complexity	1	51	(0)	3436413
1058	20.4	1.2	1.6	chr6	83358978	83359221	(87446758)	C	SVA_F	Retroposon/SVA	(676)	699	457	3436414
32036	8.6	1.2	0.3	chr6	83359227	83364004	(87441975)	+	HERVL-int	LTR/ERVL	734	5654	(0)	3436409
7835	3.6	0.3	0.0	chr6	85485885	85486778	(85319201)	C	MER11D	LTR/ERVK	(0)	897	1	3439124
6134	9.3	1.3	3.4	chr6	85837973	85839700	(84966279)	+	SVA_D	Retroposon/SVA	53	1386	(0)	3439667
8228	5.8	1.6	20.3	chr6	87238690	87240393	(83565586)	C	SVA_A	Retroposon/SVA	(3)	1384	5	3441264
20	28.5	2.6	1.2	chr6	87701510	87701587	(83104392)	+	(GCG)n	Simple_repeat	1	80	(0)	3442026
10574	3.8	0.4	10.0	chr6	87735343	87736873	(83069106)	C	SVA_C	Retroposon/SVA	(0)	1384	1	3442102
17	19.1	7.2	2.7	chr6	88166294	88166362	(82639617)	+	(TCGCTC)n	Simple_repeat	1	74	(0)	3442790
3400	14.4	7.4	2.6	chr6	89072858	89073477	(81732502)	+	MER61F	LTR/ERV1	1	652	(24)	3444118
401	23.8	0.0	6.9	chr6	90190688	90190818	(80615161)	C	Charlie4z	DNA/hAT-Charlie	(31)	136	15	3446017
7054	7.0	2.2	1.4	chr6	99141343	99142878	(71663101)	+	SVA_D	Retroposon/SVA	1	1381	(5)	3457171
211	27.1	0.0	0.0	chr6	99588505	99588552	(71217427)	+	L2a	LINE/L2	3377	3424	(2)	3457915
247	24.2	1.6	1.6	chr6	99588556	99588618	(71217361)	C	L2a	LINE/L2	(16)	3410	3348	3457916
6724	6.4	4.0	2.3	chr6	104990586	104992027	(65813952)	C	SVA_C	Retroposon/SVA	(23)	1361	26	3464759
9048	2.7	0.7	25.4	chr6	105853107	105854948	(64951031)	C	SVA_D	Retroposon/SVA	(2)	1384	1	3466007
6085	3.0	0.4	35.0	chr6	107933705	107935786	(62870193)	+	SVA_D	Retroposon/SVA	8	1366	(20)	3469610
447	29.8	17.4	7.5	chr6	108765822	108766605	(62039374)	+	L3	LINE/CR1	3172	4049	(50)	3471116
1214	14.3	22.6	0.9	chr6	108766879	108767110	(62038869)	C	AluJb	SINE/Alu	(5)	297	1	3471117
16	18.9	0.0	0.0	chr6	108767281	108767310	(62038669)	+	(T)n	Simple_repeat	1	30	(0)	3471118
6786	7.0	17.6	0.5	chr6	110742100	110743147	(60062832)	+	MER11A	LTR/ERVK	1	1266	(0)	3474219
10383	3.2	1.2	12.7	chr6	111016684	111018243	(59787736)	C	SVA_C	Retroposon/SVA	(1)	1383	5	3474861
10236	4.0	7.3	0.0	chr6	112047111	112048372	(58757607)	+	SVA_D	Retroposon/SVA	26	1386	(0)	3476574
26	0.0	0.0	0.0	chr6	113970946	113970970	(56835009)	+	(CTG)n	Simple_repeat	1	25	(0)	3479422
16	0.0	0.0	4.2	chr6	113971649	113971672	(56834307)	+	(TTA)n	Simple_repeat	1	24	(0)	3479423
300	27.4	13.3	5.0	chr6	113971785	113972009	(56833970)	C	MIRb	SINE/MIR	(8)	260	5	3479424
18	24.6	0.0	0.0	chr6	116100826	116100873	(54705106)	+	(GCCCC)n	Simple_repeat	1	48	(0)	3482130
9615	3.9	7.0	0.7	chr6	117750372	117751657	(53054322)	+	SVA_C	Retroposon/SVA	12	1384	(0)	3484287
12017	12.4	5.7	2.5	chr6	119236728	119237363	(51568616)	+	Tigger1	DNA/TcMar-Tigger	1446	2071	(347)	3486334
2080	12.9	0.0	0.0	chr6	121041797	121042083	(49763896)	+	AluY	SINE/Alu	17	303	(8)	3488503
6632	7.4	3.6	0.0	chr6	121042085	121042949	(49763030)	+	MER11D	LTR/ERVK	1	897	(0)	3488504
38999	3.6	0.6	0.2	chr6	121043811	121048473	(49757506)	+	HERVK11D-int	LTR/ERVK	3073	7752	(0)	3488504
7243	4.7	2.6	0.0	chr6	121048474	121049347	(49756632)	+	MER11D	LTR/ERVK	1	897	(0)	3488504
18	7.0	0.0	3.1	chr6	121334481	121334521	(49471458)	+	(CGCGCA)n	Simple_repeat	1	39	(0)	3488811
9830	7.3	1.0	4.5	chr6	121729073	121730450	(49075529)	C	SVA_B	Retroposon/SVA	(0)	1383	41	3489488
17	15.7	5.5	6.5	chr6	122610433	122610505	(48195474)	+	(GAGCGC)n	Simple_repeat	1	77	(0)	3490622
5319	7.8	3.0	5.5	chr6	122849195	122850317	(47955662)	C	SVA_F	Retroposon/SVA	(518)	857	18	3490955
10784	2.8	0.4	8.6	chr6	125770165	125771668	(45034311)	+	SVA_C	Retroposon/SVA	5	1384	(0)	3494794
13	13.1	0.0	0.0	chr6	125790897	125790921	(45015058)	+	(CCT)n	Simple_repeat	1	25	(0)	3494827
11	28.1	0.0	5.3	chr6	127343105	127343161	(43462818)	+	(CCGCGGC)n	Simple_repeat	1	57	(0)	3496758
37	0.0	0.0	0.0	chr6	135180404	135180437	(35625542)	+	(T)n	Simple_repeat	1	34	(0)	3508087
28	2.7	0.0	6.8	chr6	135181329	135181372	(35624607)	+	(TCC)n	Simple_repeat	1	44	(0)	3508088
13	10.4	2.9	5.6	chr6	136792031	136792065	(34013914)	+	(CCTCGC)n	Simple_repeat	1	36	(0)	3510465
13	20.9	1.0	5.2	chr6	136822627	136822692	(33983287)	+	G-rich	Low_complexity	1	63	(0)	3510537
14	20.6	0.0	6.0	chr6	136822798	136822847	(33983132)	+	(GAGGCG)n	Simple_repeat	1	50	(0)	3510538
584	30.0	1.4	0.9	chr6	138370297	138370508	(32435471)	C	L1MC4a	LINE/L1	(1984)	5898	5686	3512859
15	12.0	3.7	0.0	chr6	138988291	138988317	(31817662)	+	GA-rich	Low_complexity	1	28	(0)	3513899
12	20.1	2.9	0.0	chr6	141139837	141139870	(29666109)	+	(ATTT)n	Simple_repeat	1	35	(0)	3516902
372	34.8	5.7	3.1	chr6	143213222	143213461	(27592518)	C	L2c	LINE/L2	(1)	3374	3150	3519541
2230	12.5	0.0	0.7	chr6	143213489	143213816	(27592163)	C	AluSx1	SINE/Alu	(0)	312	1	3519542
17	15.8	5.9	1.9	chr6	144064364	144064414	(26741565)	+	(GCCCCCGC)n	Simple_repeat	1	54	(0)	3520784
13	18.2	2.6	2.5	chr6	144285043	144285081	(26520898)	+	G-rich	Low_complexity	1	40	(0)	3521175
10171	6.3	1.7	0.9	chr6	144469704	144471072	(26334907)	C	SVA_B	Retroposon/SVA	(2)	1381	1	3521471
576	21.5	4.0	0.0	chr6	146347685	146347805	(24458174)	+	L1ME3	LINE/L1	6036	6161	(1)	3523924
1546	30.7	3.5	1.3	chr6	147126605	147127139	(23678840)	+	MLT1H1	LTR/ERVL-MaLR	1	547	(8)	3524976
16	9.8	0.0	0.0	chr6	149108072	149108093	(21697886)	+	(A)n	Simple_repeat	1	22	(0)	3527923
462	12.0	0.0	3.9	chr6	149699304	149699381	(21106598)	+	SVA_F	Retroposon/SVA	478	552	(823)	3528963
17	18.5	0.0	0.0	chr6	149699472	149699502	(21106477)	+	A-rich	Low_complexity	1	31	(0)	3528964
24	21.4	3.0	1.4	chr6	151391468	151391582	(19414397)	+	(GCG)n	Simple_repeat	1	116	(0)	3531914
28	19.6	2.0	6.9	chr6	151391701	151391800	(19414179)	+	(GCC)n	Simple_repeat	1	102	(0)	3531915
9535	3.8	0.0	24.4	chr6	154965599	154967432	(15838547)	C	SVA_D	Retroposon/SVA	(0)	1386	1	3537365
4400	10.8	2.5	8.0	chr6	158239477	158241596	(12564383)	C	SVA_F	Retroposon/SVA	(518)	857	183	3542208
6905	9.0	3.6	62.3	chr6	158348176	158350731	(12455248)	C	SVA_A	Retroposon/SVA	(0)	1387	46	3542391
15	5.6	0.0	0.0	chr6	158707399	158707417	(12098562)	+	(T)n	Simple_repeat	1	19	(0)	3542986
1879	13.2	1.1	0.0	chr6	158798659	158798923	(12007056)	C	AluSx1	SINE/Alu	(39)	273	6	3543138
345	22.7	9.2	1.5	chr6	158799198	158799327	(12006652)	C	MER5A	DNA/hAT-Charlie	(8)	181	41	3543139
219	23.5	0.0	3.8	chr6	163356397	163356449	(7449530)	C	MIRc	SINE/MIR	(115)	153	103	3549325
12	13.9	0.0	0.0	chr6	165663204	165663227	(5142752)	+	(GGC)n	Simple_repeat	1	24	(0)	3552227
19	12.2	4.2	4.0	chr6	165663262	165663309	(5142670)	+	(CGC)n	Simple_repeat	1	50	(0)	3552228
7329	6.8	0.5	24.0	chr6	169855931	169857709	(948270)	C	SVA_A	Retroposon/SVA	(0)	1387	30	3556912
12	24.6	1.7	5.1	chr6	170306579	170306584	(499395)	+	(GCCGGC)n	Simple_repeat	1	58	(0)	3557310
14	19.1	3.9	3.8	chr6	170306585	170306635	(499344)	+	(GCGTCC)n	Simple_repeat	1	53	(0)	3557311
13	28.8	0.0	0.0	chr6	170306744	170306824	(499155)	+	(GCGGAG)n	Simple_repeat	1	81	(0)	3557312
333	27.9	2.8	6.8	chr7	102759	102955	(159243018)	+	L1MB7	LINE/L1	2498	2682	(3464)	3557959
180	21.6	5.6	3.8	chr7	867154	867206	(158478767)	C	L2	LINE/L2	(2106)	1313	1260	3559012
2083	18.4	1.0	7.5	chr7	1617779	1618080	(157727893)	+	MLT1B	LTR/ERVL-MaLR	89	386	(4)	3560186
412	25.9	0.7	1.7	chr7	1618224	1618650	(157727323)	+	(GT)n	Simple_repeat	1	418	(0)	3560188
9218	3.9	0.5	9.9	chr7	2161104	2162602	(157183371)	+	SVA_B	Retroposon/SVA	24	1381	(2)	3560848
19	14.5	7.5	0.0	chr7	2232651	2232703	(157113270)	+	G-rich	Low_complexity	1	57	(0)	3560953
6394	7.3	1.8	5.2	chr7	2302090	2303968	(157042005)	+	SVA_D	Retroposon/SVA	17	1386	(0)	3561092
7349	4.8	2.9	0.1	chr7	2428388	2429259	(156916714)	C	MER11D	LTR/ERVK	(0)	897	1	3561395
3739	10.3	5.9	2.5	chr7	3578097	3579088	(155766885)	C	MER11A	LTR/ERVK	(0)	1266	1	3563509
498	24.7	9.3	3.6	chr7	3809565	3809757	(155536216)	+	UCON78	DNA	1	205	(238)	3563850
13	21.4	0.0	4.8	chr7	3810036	3810077	(155535896)	+	(TATT)n	Simple_repeat	1	42	(0)	3563851
305	32.2	6.1	5.2	chr7	3922556	3923177	(155422796)	C	L1MEj	LINE/L1	(4806)	1690	937	3564017
16	28.7	2.5	3.6	chr7	5592618	5592698	(153753275)	+	(GGC)n	Simple_repeat	1	83	(0)	3567435
1007	12.3	2.0	0.0	chr7	5611094	5611273	(153734700)	C	AluSx3	SINE/Alu	(0)	311	133	3567464
1627	6.9	0.0	2.8	chr7	5611274	5611515	(153734458)	C	AluY	SINE/Alu	(0)	311	72	3567465
10358	4.9	0.8	5.3	chr7	5736109	5737522	(153608451)	+	SVA_C	Retroposon/SVA	19	1368	(16)	3567685
5648	6.3	3.4	2.5	chr7	6223082	6223849	(153122124)	+	SVA_A	Retroposon/SVA	613	1387	(0)	3568837
179	0.0	3.4	0.0	chr7	6577112	6577287	(152768686)	+	(ATAAA)n	Simple_repeat	1	182	(0)	3569724
6451	6.0	2.0	5.6	chr7	6670236	6671350	(152674623)	C	SVA_D	Retroposon/SVA	(0)	1386	433	3569918
5851	8.2	3.1	5.3	chr7	6671368	6672456	(152673517)	C	SVA_D	Retroposon/SVA	(517)	870	19	3569918
337	30.1	6.6	10.6	chr7	14052379	14052549	(145293424)	C	L2a	LINE/L2	(1156)	2263	2096	3579544
1570	18.9	2.0	1.8	chr7	14052550	14052889	(145293084)	C	MER61A	LTR/ERV1	(0)	341	1	3579549
337	30.1	6.6	10.6	chr7	14052890	14052927	(145293046)	C	L2a	LINE/L2	(1324)	2095	2049	3579544
31	6.7	2.0	2.0	chr7	19117029	19117078	(140228895)	+	(CCG)n	Simple_repeat	1	51	(0)	3586148
23	24.8	5.1	4.0	chr7	19117129	19117246	(140228727)	+	(CGC)n	Simple_repeat	1	124	(0)	3586149
210	36.0	11.2	1.3	chr7	22822375	22822526	(136523447)	C	MIRc	SINE/MIR	(50)	218	50	3591270
6382	9.0	5.4	4.2	chr7	23045312	23047416	(136298557)	C	SVA_D	Retroposon/SVA	(18)	1368	6	3591619
10346	3.8	0.1	14.2	chr7	26147462	26149075	(133196898)	+	SVA_D	Retroposon/SVA	1	1386	(0)	3596509
8438	6.2	0.0	22.7	chr7	26175860	26177628	(133168345)	C	SVA_A	Retroposon/SVA	(0)	1387	21	3596567
6900	5.9	1.1	5.8	chr7	26261274	26263036	(133082937)	+	SVA_D	Retroposon/SVA	38	1386	(0)	3596716
274	25.9	7.0	7.0	chr7	26574920	26575077	(132770896)	+	L1ME4c	LINE/L1	415	572	(258)	3597263
31	5.5	0.0	0.0	chr7	27169594	27169631	(132176342)	+	(CCG)n	Simple_repeat	1	38	(0)	3598076
14	13.4	4.3	6.1	chr7	27169773	27169819	(132176154)	+	G-rich	Low_complexity	1	49	(0)	3598077
14	24.9	2.0	8.7	chr7	27169977	27170077	(132175896)	+	(GCCCCC)n	Simple_repeat	1	103	(0)	3598078
16	27.4	2.1	0.0	chr7	27662892	27662939	(131683034)	+	(GC)n	Simple_repeat	1	49	(0)	3598812
10877	3.8	0.7	12.8	chr7	27986631	27988204	(131357769)	+	SVA_B	Retroposon/SVA	1	1383	(0)	3599326
228	35.4	0.9	0.0	chr7	28468294	28468406	(130877567)	+	L3	LINE/CR1	3956	4069	(30)	3600112
679	24.4	2.4	0.6	chr7	29006096	29006260	(130339713)	+	MER63A	DNA/hAT-Blackjack	1	168	(42)	3600897
8376	5.3	0.7	25.1	chr7	29263001	29264829	(130081144)	+	SVA_B	Retroposon/SVA	5	1383	(0)	3601318
1213	26.4	10.9	3.0	chr7	30249112	30249871	(129096102)	C	L2a	LINE/L2	(0)	3426	2622	3602856
6921	6.4	4.1	0.1	chr7	30509034	30509894	(128836079)	C	MER11D	LTR/ERVK	(0)	897	1	3603230
9715	4.1	0.8	16.8	chr7	32753149	32754796	(126591177)	+	SVA_B	Retroposon/SVA	1	1383	(0)	3606721
8713	5.5	1.2	18.1	chr7	33303519	33305150	(126040823)	+	SVA_A	Retroposon/SVA	35	1387	(0)	3607657
16	20.8	0.0	0.0	chr7	33905439	33905471	(125440502)	+	(C)n	Simple_repeat	1	33	(0)	3608572
15	30.3	1.5	1.5	chr7	33905472	33905499	(125440474)	+	(TCCC)n	Simple_repeat	6	67	(0)	3608573
751	24.8	17.5	1.4	chr7	44279065	44279342	(115066631)	+	L1MC5	LINE/L1	8973	9304	(0)	3624019
12	27.3	2.2	0.0	chr7	44582356	44582400	(114763573)	+	(CCGCCCC)n	Simple_repeat	1	46	(0)	3624448
6692	9.4	3.9	47.8	chr7	44870328	44872661	(114473312)	C	SVA_A	Retroposon/SVA	(0)	1387	1	3625072
7886	6.8	0.1	18.4	chr7	54443501	54445134	(104900839)	+	SVA_A	Retroposon/SVA	51	1384	(3)	3637357
2455	9.1	0.9	0.3	chr7	54791893	54792235	(104553738)	+	L1PREC2	LINE/L1	4340	4684	(1462)	3637813
1584	20.0	3.6	2.8	chr7	54792339	54792900	(104553073)	C	SVA_F	Retroposon/SVA	(519)	856	421	3637814
6174	9.9	2.5	1.1	chr7	54792901	54794364	(104551609)	+	L1PA13	LINE/L1	4676	6162	(1)	3637815
367	17.7	3.1	0.0	chr7	57495408	57495469	(101850504)	+	AluYj4	SINE/Alu	226	289	(22)	3642546
94	10.7	1.1	1.1	chr7	57495470	57495644	(101850329)	+	(GGAAT)n	Simple_repeat	1	177	(0)	3642547
21	20.1	0.0	0.0	chr7	57867910	57867949	(101478024)	+	A-rich	Low_complexity	1	40	(0)	3643144
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
10988	3.9	0.4	5.8	chr7	65032923	65034384	(94311589)	+	SVA_C	Retroposon/SVA	1	1384	(0)	3647120
6626	2.3	0.0	42.5	chr7	66392755	66395116	(92950857)	C	SVA_E	Retroposon/SVA	(23)	1359	3	3649899
9957	3.8	0.9	6.3	chr7	66614054	66615506	(92730467)	+	SVA_C	Retroposon/SVA	12	1384	(0)	3650407
1611	19.5	5.8	5.0	chr7	67888204	67889141	(91456832)	+	SVA_F	Retroposon/SVA	420	872	(515)	3653239
920	16.1	1.1	2.2	chr7	67889149	67889332	(91456641)	+	SVA_F	Retroposon/SVA	471	652	(723)	3653240
1673	20.4	4.8	65.1	chr7	67889333	67889914	(91456059)	+	SVA_F	Retroposon/SVA	421	857	(518)	3653241
1783	19.9	5.5	2.4	chr7	67889915	67890337	(91455636)	+	SVA_F	Retroposon/SVA	421	857	(518)	3653241
323	22.1	0.0	8.3	chr7	68082010	68082093	(91263880)	+	MLT1A0	LTR/ERVL-MaLR	1	77	(297)	3653678
2034	12.8	7.7	46.4	chr7	68082079	68082876	(91263097)	+	SVA_F	Retroposon/SVA	422	857	(518)	3653679
1961	14.5	7.1	1.0	chr7	68082877	68083286	(91262687)	+	SVA_F	Retroposon/SVA	421	857	(518)	3653679
6488	7.7	3.8	5.1	chr7	68083283	68084260	(91261713)	+	SVA_A	Retroposon/SVA	423	1387	(0)	3653680
321	26.9	10.2	2.8	chr7	70595589	70595733	(88750240)	+	MIR3	SINE/MIR	31	187	(21)	3658540
16	24.9	1.8	1.8	chr7	70596143	70596197	(88749776)	+	(GCGCG)n	Simple_repeat	1	56	(0)	3658541
1246	18.9	0.0	0.0	chr7	72488692	72488897	(86857076)	C	AluJr	SINE/Alu	(20)	292	87	3662434
2320	9.6	0.0	3.4	chr7	76354229	76354551	(82991422)	+	AluSx1	SINE/Alu	1	312	(0)	3671934
334	23.1	3.7	1.9	chr7	76355131	76355236	(82990737)	+	L1MB4	LINE/L1	6072	6179	(1)	3671935
6198	8.2	3.7	7.2	chr7	77532904	77534787	(81811186)	C	SVA_D	Retroposon/SVA	(0)	1386	119	3673964
7079	5.3	2.7	0.0	chr7	78832666	78833536	(80512437)	+	MER11D	LTR/ERVK	1	895	(2)	3675993
8240	4.2	15.4	2.2	chr7	83124708	83125903	(76220070)	+	SVA_B	Retroposon/SVA	1	1383	(0)	3681852
48	0.0	0.0	0.0	chr7	87628585	87628625	(71717348)	+	(GT)n	Simple_repeat	1	41	(0)	3687477
14	9.3	0.0	0.0	chr7	87628861	87628883	(71717090)	+	(GCG)n	Simple_repeat	1	23	(0)	3687478
7691	3.3	0.0	0.7	chr7	87714158	87715060	(71630913)	C	MER11D	LTR/ERVK	(0)	897	1	3687583
7524	3.9	0.9	0.1	chr7	87732531	87733420	(71612553)	C	MER11D	LTR/ERVK	(0)	897	1	3687605
5032	9.6	2.2	4.7	chr7	91886846	91887740	(67458233)	+	SVA_A	Retroposon/SVA	1	872	(515)	3693024
6204	8.9	4.3	80.2	chr7	91887747	91889713	(67456260)	+	SVA_A	Retroposon/SVA	421	1386	(1)	3693025
3589	14.1	9.8	2.8	chr7	92442577	92443686	(66902287)	C	MER11A	LTR/ERVK	(0)	1236	1	3693898
10177	5.3	0.7	5.7	chr7	92544409	92545863	(66800110)	C	SVA_B	Retroposon/SVA	(0)	1383	2	3694048
2190	8.9	1.1	0.7	chr7	92590620	92590931	(66755042)	C	AluSx1	SINE/Alu	(0)	312	1	3694135
3184	8.8	2.1	3.2	chr7	94713839	94714330	(64631643)	C	L1PA8	LINE/L1	(0)	6172	5687	3697009
384	20.1	0.6	1.1	chr7	94714335	94714423	(64631550)	+	SVA_F	Retroposon/SVA	510	629	(746)	3697010
22945	12.1	2.2	1.6	chr7	94714546	94720331	(64625642)	C	L1PA8A	LINE/L1	(431)	7695	1	3697011
1206	20.6	4.2	2.7	chr7	94849053	94849568	(64496405)	C	SVA_F	Retroposon/SVA	(505)	877	405	3697142
679	8.1	0.0	0.0	chr7	94849583	94849669	(64496304)	C	AluYj4	SINE/Alu	(10)	301	215	3697143
1274	19.4	5.5	3.1	chr7	94849680	94850104	(64495869)	C	SVA_F	Retroposon/SVA	(518)	857	422	3697142
3576	19.8	5.4	1.4	chr7	95919794	95920648	(63425325)	+	L1MC3	LINE/L1	6895	7785	(0)	3698645
1320	31.0	5.3	2.4	chr7	97159311	97159934	(62186039)	C	L1M4	LINE/L1	(6870)	647	5	3700360
3352	8.2	5.2	3.8	chr7	97160025	97160611	(62185362)	+	SVA_A	Retroposon/SVA	485	1080	(307)	3700361
13	21.7	0.0	2.6	chr7	98878848	98878886	(60467087)	+	(GCGCTCG)n	Simple_repeat	1	39	(0)	3703633
15	18.5	4.7	0.0	chr7	100626715	100626757	(58719216)	+	G-rich	Low_complexity	1	45	(0)	3706987
12	17.8	7.9	4.4	chr7	100626885	100626947	(58719026)	+	G-rich	Low_complexity	1	68	(0)	3706988
15	12.8	2.0	7.8	chr7	100627014	100627063	(58718910)	+	(GCAGGAG)n	Simple_repeat	1	51	(0)	3706989
14	17.9	0.0	4.8	chr7	100627110	100627151	(58718822)	+	G-rich	Low_complexity	1	42	(0)	3706990
661	27.6	10.2	2.1	chr7	100717838	100718003	(58627970)	+	L2a	LINE/L2	3251	3425	(1)	3707203
7783	3.6	0.2	0.7	chr7	100718143	100719043	(58626930)	+	MER11D	LTR/ERVK	1	897	(0)	3707205
5207	7.8	2.0	5.3	chr7	100741755	100742900	(58603073)	C	SVA_F	Retroposon/SVA	(518)	857	4	3707260
251	30.3	3.4	14.3	chr7	100855952	100856182	(58489791)	C	L2c	LINE/L2	(20)	3367	3163	3707526
6615	9.0	3.0	5.5	chr7	101091763	101093354	(58252619)	+	SVA_C	Retroposon/SVA	10	1384	(0)	3707974
204	30.9	11.3	6.2	chr7	102626677	102626717	(56719256)	+	L2b	LINE/L2	3141	3187	(188)	3711454
2250	12.7	0.7	0.0	chr7	102626718	102626904	(56719069)	C	AluSz	SINE/Alu	(0)	312	126	3711455
1410	27.4	8.0	1.2	chr7	103068442	103068869	(56277104)	+	L1MEg2	LINE/L1	12	471	(5981)	3712156
250	28.1	0.0	0.0	chr7	103068884	103068940	(56277033)	+	L1MEg2	LINE/L1	568	624	(5828)	3712156
1396	18.1	4.5	3.2	chr7	103068949	103069340	(56276633)	+	SVA_F	Retroposon/SVA	430	801	(574)	3712157
1531	23.5	2.6	1.5	chr7	103069460	103069796	(56276177)	+	L1MEg2	LINE/L1	633	973	(5479)	3712156
280	22.6	0.0	2.2	chr7	105657366	105657430	(53688543)	+	MER3	DNA/hAT-Charlie	7	115	(94)	3716312
1952	13.9	5.2	2.0	chr7	105657431	105657731	(53688242)	+	AluJb	SINE/Alu	1	311	(1)	3716313
269	24.0	0.0	20.9	chr7	105657732	105657818	(53688155)	+	Charlie5	DNA/hAT-Charlie	69	127	(2497)	3716312
10100	3.9	0.2	10.6	chr7	107847519	107849053	(51496920)	+	SVA_C	Retroposon/SVA	1	1376	(8)	3719704
8517	4.3	0.3	26.9	chr7	111609316	111611173	(47734800)	+	SVA_D	Retroposon/SVA	30	1386	(0)	3724582
10465	5.3	0.7	4.0	chr7	112696646	112698078	(46647895)	C	SVA_C	Retroposon/SVA	(0)	1384	1	3726180
18	7.8	0.0	0.0	chr7	114922577	114922603	(44423370)	+	(GGA)n	Simple_repeat	1	27	(0)	3729032
15	21.1	1.9	3.7	chr7	116210745	116210797	(43135176)	+	(GCGCGCG)n	Simple_repeat	1	54	(0)	3730740
7185	7.8	1.6	6.8	chr7	116638124	116639351	(42706622)	+	SVA_A	Retroposon/SVA	5	1167	(220)	3731343
12	12.4	8.6	0.0	chr7	117322933	117322967	(42023006)	+	(GAGCCA)n	Simple_repeat	1	38	(0)	3732387
20	25.5	1.1	6.3	chr7	127588308	127588401	(31757572)	+	G-rich	Low_complexity	1	95	(0)	3745955
15	27.6	4.6	0.0	chr7	127588434	127588498	(31757475)	+	(CCCGCG)n	Simple_repeat	1	68	(0)	3745956
11	25.3	0.0	4.3	chr7	127588585	127588630	(31757343)	+	(CGGCCC)n	Simple_repeat	1	46	(0)	3745957
3777	7.3	3.1	1.6	chr7	128291336	128292007	(31053966)	+	MER11A	LTR/ERVK	1	748	(488)	3746969
28101	3.2	0.4	0.0	chr7	128292012	128298140	(31047833)	+	L1PA3	LINE/L1	1	6155	(0)	3746970
15	24.3	3.8	0.0	chr7	128409985	128410037	(30935936)	+	G-rich	Low_complexity	1	55	(0)	3747161
10533	4.8	0.9	5.7	chr7	128462839	128464284	(30881689)	+	SVA_B	Retroposon/SVA	8	1383	(0)	3747285
9933	3.9	0.5	16.8	chr7	128688772	128690418	(30655555)	+	SVA_C	Retroposon/SVA	5	1381	(3)	3747800
8980	6.2	0.8	12.6	chr7	129215717	129217278	(30128695)	+	SVA_A	Retroposon/SVA	12	1387	(0)	3748736
9670	4.3	0.4	17.1	chr7	129475564	129477221	(29868752)	C	SVA_C	Retroposon/SVA	(0)	1384	4	3749201
9775	6.2	1.4	4.4	chr7	129662776	129664186	(29681787)	C	SVA_A	Retroposon/SVA	(12)	1375	1	3749628
4084	15.0	4.1	4.3	chr7	131755240	131755743	(27590230)	C	L1MC1	LINE/L1	(2457)	3689	3170	3753398
1862	15.6	2.3	1.0	chr7	131755836	131756246	(27589727)	C	SVA_F	Retroposon/SVA	(518)	857	421	3753405
1844	16.4	6.8	0.2	chr7	131756269	131756664	(27589309)	C	L1MC	LINE/L1	(2800)	3346	2923	3753406
13	25.5	0.0	9.5	chr7	134127159	134127242	(25218731)	+	A-rich	Low_complexity	1	84	(0)	3757000
1693	20.4	1.9	0.0	chr7	136212737	136213049	(23132924)	C	MLT1A0	LTR/ERVL-MaLR	(0)	365	47	3760295
517	17.2	2.0	6.5	chr7	136213149	136213303	(23132670)	C	SVA_F	Retroposon/SVA	(800)	575	428	3760296
263	18.5	3.6	0.0	chr7	136213303	136213356	(23132617)	C	MLT1A0	LTR/ERVL-MaLR	(309)	56	1	3760295
1689	22.7	6.3	0.4	chr7	136213357	136213807	(23132166)	C	L1ME2	LINE/L1	(306)	5858	5380	3760294
7718	3.1	0.2	0.1	chr7	137205564	137206459	(22139514)	+	MER11D	LTR/ERVK	1	897	(0)	3761651
2384	9.9	0.0	0.0	chr7	138008338	138008640	(21337333)	C	AluSg	SINE/Alu	(7)	303	1	3762734
974	16.6	0.0	0.7	chr7	138009089	138009239	(21336734)	C	AluJo	SINE/Alu	(162)	150	1	3762735
480	28.2	11.6	0.0	chr7	138009285	138009497	(21336476)	C	L1ME3	LINE/L1	(88)	6074	5834	3762736
9239	3.0	12.6	1.2	chr7	139100801	139102019	(20243954)	+	SVA_C	Retroposon/SVA	2	1379	(5)	3764927
4924	8.8	4.4	0.6	chr7	139224867	139225682	(20120291)	+	SVA_A	Retroposon/SVA	25	872	(515)	3765150
1265	16.3	11.0	0.6	chr7	139225689	139226022	(20119951)	+	SVA_F	Retroposon/SVA	421	793	(582)	3765151
6126	6.6	5.6	2.1	chr7	139226023	139226979	(20118994)	+	SVA_A	Retroposon/SVA	395	1387	(0)	3765152
6328	8.8	2.1	3.1	chr7	140114172	140115812	(19230161)	+	SVA_D	Retroposon/SVA	29	1385	(1)	3766723
328	4.3	0.0	0.0	chr7	140200720	140200766	(19145207)	C	AluJb	SINE/Alu	(0)	302	256	3766882
830	13.9	0.0	9.2	chr7	140200767	140200820	(19145153)	C	AluJb	SINE/Alu	(142)	170	130	3766882
10481	3.6	9.6	0.1	chr7	142574939	142576144	(16769829)	+	SVA_B	Retroposon/SVA	43	1380	(3)	3770754
410	20.6	6.8	1.4	chr7	149135986	149136123	(10209850)	C	L1MD	LINE/L1	(986)	5160	5015	3780119
26	6.1	0.0	0.0	chr7	149136125	149136158	(10209815)	+	(ATTT)n	Simple_repeat	1	34	(0)	3780124
819	14.1	0.1	2.9	chr7	149136252	149136426	(10209547)	C	SVA_F	Retroposon/SVA	(709)	666	445	3780125
968	22.0	2.2	4.7	chr7	149136427	149136569	(10209404)	C	L1MD	LINE/L1	(1128)	5018	4887	3780119
303	32.9	0.5	0.0	chr7	149692449	149692597	(9653376)	+	L1MEg	LINE/L1	1483	1638	(869)	3781041
7471	4.0	0.8	24.4	chr7	150197884	150199625	(9146348)	+	SVA_C	Retroposon/SVA	58	1384	(0)	3781688
13	28.0	0.0	4.9	chr7	150323401	150323461	(9022512)	+	G-rich	Low_complexity	1	61	(0)	3781882
427	32.1	2.1	1.4	chr7	150323695	150323836	(9022137)	C	MIR	SINE/MIR	(3)	259	117	3781883
13	25.7	1.5	5.9	chr7	150379630	150379696	(8966277)	+	GA-rich	Low_complexity	1	68	(0)	3781974
216	28.8	11.9	0.9	chr7	150379770	150379874	(8966099)	+	L2c	LINE/L2	3264	3381	(6)	3781975
199	26.8	10.1	0.0	chr7	150380185	150380255	(8965718)	+	MIR3	SINE/MIR	130	208	(0)	3781976
1531	18.2	3.0	4.6	chr7	150486823	150487129	(8858844)	C	AluJr	SINE/Alu	(10)	302	1	3782147
729	25.1	20.8	5.8	chr7	150487130	150487659	(8858314)	C	L1MC5a	LINE/L1	(2081)	696	447	3782146
206	17.4	8.0	6.8	chr7	151460498	151460571	(7885402)	C	MIR3	SINE/MIR	(18)	190	116	3783484
906	10.5	0.7	0.0	chr7	151778369	151778501	(7567472)	+	MSTB1	LTR/ERVL-MaLR	298	431	(1)	3784030
1021	27.4	6.5	2.9	chr7	151990598	151990980	(7354993)	+	MLT1J1	LTR/ERVL-MaLR	39	436	(8)	3784381
7071	5.5	2.7	0.1	chr7	153244679	153245552	(6100421)	C	MER11D	LTR/ERVK	(0)	897	1	3786691
14	27.5	2.9	2.8	chr7	155003419	155003487	(4342486)	+	G-rich	Low_complexity	1	71	(0)	3789016
1465	22.1	9.5	8.1	chr7	155101590	155101920	(4244053)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	186	3789177
1938	15.0	0.0	1.0	chr7	155101921	155102214	(4243759)	C	AluJb	SINE/Alu	(21)	291	1	3789178
2488	17.1	7.5	3.0	chr7	155279529	155280136	(4065837)	+	MER6	DNA/TcMar-Tigger	16	653	(212)	3789448
437	13.9	0.0	1.2	chr7	155280249	155280328	(4065645)	C	SVA_F	Retroposon/SVA	(860)	515	437	3789449
1129	16.3	6.1	0.5	chr7	155280335	155280550	(4065423)	+	MER6A	DNA/TcMar-Tigger	377	605	(0)	3789450
14	3.9	7.4	0.0	chr7	155280944	155280970	(4065003)	+	(TTTTA)n	Simple_repeat	1	29	(0)	3789451
1010	25.2	9.0	0.6	chr7	155340574	155340888	(4005085)	C	L1MB3	LINE/L1	(10)	6173	5830	3789528
598	29.8	6.2	4.7	chr7	157442556	157442838	(1903135)	+	MLT1D	LTR/ERVL-MaLR	137	435	(70)	3792479
1837	17.1	2.7	0.6	chr7	157442839	157443168	(1902805)	C	MER1B	DNA/hAT-Charlie	(2)	337	1	3792480
17	30.1	3.6	3.5	chr7	157810538	157810649	(1535324)	+	G-rich	Low_complexity	1	116	(0)	3792769
367	29.1	3.9	9.0	chr7	157810896	157810989	(1534984)	C	Charlie16a	DNA/hAT-Charlie	(66)	276	190	3792770
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
10015	4.3	0.8	9.9	chr8	9153427	9154908	(135983728)	C	SVA_F	Retroposon/SVA	(22)	1353	11	3806008
7106	6.1	1.6	2.9	chr8	9364368	9365405	(135773231)	C	SVA_D	Retroposon/SVA	(0)	1386	427	3806376
18	6.4	6.1	0.0	chr8	10730665	10730697	(134407939)	+	(GGGA)n	Simple_repeat	1	35	(0)	3808552
2210	5.9	4.1	1.8	chr8	11769122	11769407	(133369229)	+	AluSx	SINE/Alu	1	293	(19)	3810129
6147	6.9	12.8	6.5	chr8	14544085	14545174	(130593462)	+	MER11A	LTR/ERVK	1	1266	(0)	3814153
2501	5.8	0.3	0.0	chr8	17912374	17912664	(127225972)	C	AluY	SINE/Alu	(19)	292	1	3818930
17248	27.8	2.7	2.6	chr8	17912665	17914948	(127223688)	C	HERVK-int	LTR/ERVK	(4257)	3279	966	3818929
1897	25.4	9.6	5.7	chr8	22237338	22237806	(122900830)	C	L2a	LINE/L2	(303)	3123	2563	3825811
1979	12.7	0.0	1.9	chr8	22237807	22238113	(122900523)	+	AluJb	SINE/Alu	1	301	(11)	3825813
10391	4.4	0.2	7.4	chr8	25102442	25103887	(120034749)	+	SVA_B	Retroposon/SVA	36	1377	(6)	3830503
13	10.4	6.5	0.0	chr8	26382996	26383040	(118755596)	+	G-rich	Low_complexity	1	47	(0)	3832641
13	0.0	0.0	0.0	chr8	26383168	26383184	(118755452)	+	(ACA)n	Simple_repeat	1	17	(0)	3832642
6453	9.4	3.8	1.3	chr8	26683137	26684098	(118454538)	C	SVA_A	Retroposon/SVA	(3)	1384	437	3833161
508	22.2	7.5	2.9	chr8	26684090	26684228	(118454408)	C	MER5B	DNA/hAT-Charlie	(32)	146	1	3833162
770	22.7	1.2	0.0	chr8	26684230	26684392	(118454244)	+	MER5A1	DNA/hAT-Charlie	2	166	(0)	3833163
271	31.0	10.7	5.6	chr8	27785868	27786105	(117352531)	C	L2c	LINE/L2	(8)	3379	3090	3834985
245	22.7	23.6	5.3	chr8	27786106	27786177	(117352459)	+	MER112	DNA/hAT-Charlie	2	68	(193)	3834986
2714	8.0	7.2	1.5	chr8	27786178	27786585	(117352051)	C	LTR3B	LTR/ERVK	(4)	433	1	3834987
6495	12.7	7.7	1.4	chr8	29935922	29937071	(115201565)	+	Tigger3b	DNA/TcMar-Tigger	4	1231	(0)	3838723
6688	5.5	1.4	18.1	chr8	30245945	30247879	(114890757)	C	SVA_E	Retroposon/SVA	(20)	1367	50	3839362
570	7.0	1.0	4.8	chr8	36320775	36320879	(108817757)	C	SVA_F	Retroposon/SVA	(822)	553	453	3848728
769	4.8	0.0	0.0	chr8	36320880	36320963	(108817673)	C	AluSc	SINE/Alu	(225)	84	1	3848729
23307	11.5	0.9	0.8	chr8	37278961	37285367	(107853269)	+	L1PA8A	LINE/L1	8	6431	(15)	3850082
14	28.5	3.4	0.0	chr8	37684264	37684322	(107454314)	+	(TGTTGT)n	Simple_repeat	1	61	(0)	3850777
968	13.1	0.0	0.0	chr8	37684703	37684832	(107453804)	+	AluJb	SINE/Alu	167	296	(16)	3850778
1096	26.2	4.6	3.7	chr8	39112887	39113207	(106025429)	+	MLT1H	LTR/ERVL-MaLR	8	331	(218)	3853529
293	22.2	0.0	0.0	chr8	39113225	39113287	(106025349)	+	MLT1H	LTR/ERVL-MaLR	286	348	(141)	3853529
1277	30.3	4.8	5.9	chr8	39113325	39113978	(106024658)	C	ERVL-E-int	LTR/ERVL	(2586)	3081	2325	3853530
6412	10.8	3.1	2.4	chr8	39338431	39339934	(105798702)	C	SVA_B	Retroposon/SVA	(0)	1383	79	3853759
1998	13.8	6.9	3.1	chr8	42254213	42254372	(102884264)	C	MER31-int	LTR/ERV1	(637)	4299	4123	3858449
1973	17.6	5.5	50.9	chr8	42254373	42255202	(102883434)	+	SVA_F	Retroposon/SVA	421	857	(518)	3858451
1460	13.8	1.2	5.2	chr8	42391246	42391514	(102747122)	+	AluJo	SINE/Alu	1	258	(54)	3858711
7603	6.1	1.4	2.8	chr8	43032396	43034027	(102104609)	C	SVA_D	Retroposon/SVA	(6)	1380	1	3859972
6850	7.6	2.9	0.0	chr8	46019600	46020470	(99118166)	+	MER11D	LTR/ERVK	1	897	(0)	3860727
8893	5.8	12.3	0.0	chr8	47137487	47138690	(97999946)	+	SVA_A	Retroposon/SVA	15	1387	(0)	3861509
373	27.4	2.9	5.6	chr8	48148023	48148165	(96990471)	C	MIR3	SINE/MIR	(45)	163	25	3863027
1920	16.1	4.4	1.5	chr8	48148236	48148755	(96989881)	+	SVA_F	Retroposon/SVA	421	857	(518)	3863028
10211	5.5	1.4	6.9	chr8	49040894	49042358	(96096278)	C	SVA_B	Retroposon/SVA	(0)	1383	1	3863972
6274	7.3	3.0	11.1	chr8	51533478	51535612	(93603024)	+	SVA_E	Retroposon/SVA	6	1359	(23)	3866911
3794	19.5	4.3	1.6	chr8	53944746	53945626	(91193010)	+	L1MB7	LINE/L1	5270	6175	(9)	3870182
10107	4.0	2.4	8.6	chr8	54084968	54086444	(91052192)	+	SVA_B	Retroposon/SVA	1	1383	(0)	3870467
7907	3.6	0.0	0.1	chr8	54089877	54090774	(91047862)	+	MER11D	LTR/ERVK	1	897	(0)	3870475
605	22.5	2.4	0.6	chr8	54255628	54255788	(90882848)	+	MER5A1	DNA/hAT-Charlie	1	164	(2)	3870783
1831	16.5	4.3	0.0	chr8	54255890	54256180	(90882456)	C	AluJb	SINE/Alu	(8)	304	1	3870784
8520	2.6	0.0	31.6	chr8	56103838	56105655	(89032981)	C	SVA_D	Retroposon/SVA	(191)	1195	4	3873556
304	21.1	10.6	1.3	chr8	56157513	56157589	(88981047)	+	Tigger9a	DNA/TcMar-Tigger	648	732	(0)	3873622
7213	22.8	2.8	1.4	chr8	56359734	56360561	(88778075)	C	L1M2a1	LINE/L1	(3932)	3633	2809	3873844
6898	6.5	2.7	0.6	chr8	56360562	56361439	(88777197)	+	MER11D	LTR/ERVK	1	897	(0)	3873846
7899	4.0	1.5	31.0	chr8	57021203	57023175	(88115461)	+	SVA_D	Retroposon/SVA	2	1383	(3)	3874748
6948	6.5	1.8	2.0	chr8	57070790	57072010	(88066626)	C	SVA_D	Retroposon/SVA	(1)	1385	317	3874811
1574	27.8	4.4	3.6	chr8	57205915	57206586	(87932050)	C	MER50	LTR/ERV1	(29)	705	28	3874990
2155	21.6	10.2	2.4	chr8	57209256	57210098	(87928538)	C	MER50-int	LTR/ERV1	(5568)	1637	729	3874991
1080	24.1	1.3	2.5	chr8	57210109	57210427	(87928209)	C	MER50	LTR/ERV1	(134)	600	286	3874991
1801	18.8	4.1	4.4	chr8	62394586	62395434	(82743202)	C	SVA_F	Retroposon/SVA	(515)	872	389	3881816
7773	20.2	5.7	4.5	chr8	65973806	65974145	(79164491)	+	MLT1A1-int	LTR/ERVL-MaLR	1387	1735	(0)	3886691
1752	19.0	12.3	0.0	chr8	65974146	65974503	(79164133)	+	MLT1A1	LTR/ERVL-MaLR	1	408	(0)	3886691
12	13.7	0.0	0.0	chr8	66177114	66177137	(78961499)	+	(GCA)n	Simple_repeat	1	24	(0)	3886967
17	19.9	2.1	2.0	chr8	66177289	66177336	(78961300)	+	(CGGCTG)n	Simple_repeat	1	49	(0)	3886968
3883	11.7	4.5	3.3	chr8	66249155	66250113	(78888523)	+	MER11A	LTR/ERVK	1	1071	(0)	3887061
5343	7.8	1.9	14.1	chr8	67310126	67311232	(77827404)	+	SVA_F	Retroposon/SVA	47	857	(518)	3889049
29	0.0	0.0	0.0	chr8	67343821	67343847	(77794789)	+	(GCG)n	Simple_repeat	1	27	(0)	3889097
17	24.9	1.2	6.2	chr8	67343866	67343945	(77794691)	+	(CGCGG)n	Simple_repeat	1	81	(0)	3889098
26	0.0	0.0	0.0	chr8	69832995	69833019	(75305617)	+	(CCG)n	Simple_repeat	1	25	(0)	3892657
17	6.6	6.2	0.0	chr8	69855490	69855522	(75283114)	+	(TTTTG)n	Simple_repeat	1	35	(0)	3892694
6543	6.5	2.9	4.9	chr8	69855614	69856557	(75282079)	+	SVA_A	Retroposon/SVA	463	1387	(0)	3892695
1631	21.4	22.1	1.6	chr8	70088264	70088871	(75049765)	C	LTR41	LTR/ERVL	(0)	768	1	3893264
26	0.0	0.0	0.0	chr8	71362156	71362180	(73776456)	+	(T)n	Simple_repeat	1	25	(0)	3895128
9324	5.0	0.4	14.5	chr8	73844155	73845726	(71292910)	+	SVA_B	Retroposon/SVA	34	1383	(0)	3898641
298	29.0	3.1	1.6	chr8	85659943	85660068	(59478568)	C	L1ME4b	LINE/L1	(0)	892	765	3914925
322	27.6	0.0	0.0	chr8	85660141	85660227	(59478409)	C	MLT1F1	LTR/ERVL-MaLR	(482)	87	1	3914926
4592	9.3	0.1	1.5	chr8	85660229	85660904	(59477732)	C	L1P1	LINE/L1	(2973)	3173	2507	3914927
354	9.5	1.6	6.0	chr8	86184931	86184997	(58953639)	C	SVA_F	Retroposon/SVA	(822)	553	490	3915644
1677	19.4	0.4	0.4	chr8	86185031	86185308	(58953328)	+	AluJb	SINE/Alu	13	290	(22)	3915645
9987	3.7	0.4	13.0	chr8	86389157	86390736	(58747900)	C	SVA_B	Retroposon/SVA	(0)	1383	3	3916002
13	19.0	0.0	5.0	chr8	92102807	92102846	(53035790)	+	(GCCC)n	Simple_repeat	1	40	(0)	3923412
16	10.5	3.2	0.0	chr8	92103158	92103188	(53035448)	+	(CTCC)n	Simple_repeat	1	32	(0)	3923413
17	21.4	3.9	5.0	chr8	92103352	92103428	(53035208)	+	(GCGCCGC)n	Simple_repeat	1	80	(0)	3923414
12	9.8	0.0	0.0	chr8	92103580	92103601	(53035035)	+	(GGGC)n	Simple_repeat	1	22	(0)	3923415
6620	12.1	5.7	27.4	chr8	93832699	93833753	(51304883)	C	SVA_A	Retroposon/SVA	(0)	1387	694	3925894
1726	14.5	9.5	3.4	chr8	93833754	93834224	(51304412)	C	SVA_E	Retroposon/SVA	(492)	890	388	3925895
6620	12.1	5.7	27.4	chr8	93834225	93835276	(51303360)	C	SVA_A	Retroposon/SVA	(0)	693	1	3925894
8228	7.0	1.2	4.5	chr8	93970257	93971448	(51167188)	C	SVA_B	Retroposon/SVA	(216)	1167	15	3926121
12	12.0	3.7	0.0	chr8	94474885	94474911	(50663725)	+	(CCTC)n	Simple_repeat	1	28	(0)	3926895
13	24.6	2.3	0.0	chr8	97840655	97840697	(47297939)	+	A-rich	Low_complexity	1	44	(0)	3932554
1824	14.8	3.4	2.6	chr8	97840756	97841189	(47297447)	C	SVA_F	Retroposon/SVA	(518)	857	421	3932555
10212	5.2	0.6	5.8	chr8	98051107	98052515	(47086121)	C	SVA_B	Retroposon/SVA	(0)	1383	48	3932998
13	18.1	0.0	7.0	chr8	102806671	102806713	(42331923)	+	G-rich	Low_complexity	1	43	(0)	3941146
6624	5.8	1.0	29.2	chr8	117426170	117428074	(27710562)	+	SVA_A	Retroposon/SVA	23	1384	(3)	3961601
368	32.8	7.5	8.5	chr8	117615158	117615604	(27523032)	+	MLT1N2	LTR/ERVL-MaLR	10	451	(111)	3961877
9747	6.8	4.6	1.3	chr8	117777075	117778410	(27360226)	+	SVA_B	Retroposon/SVA	1	1383	(0)	3962151
30	16.8	3.9	2.5	chr8	118111659	118111735	(27026901)	+	(GCG)n	Simple_repeat	1	80	(0)	3962716
10225	2.9	1.7	13.5	chr8	124431312	124432886	(20705750)	C	SVA_D	Retroposon/SVA	(0)	1386	1	3973700
2405	5.4	0.0	0.0	chr8	130518528	130518836	(14619800)	C	AluY	SINE/Alu	(0)	311	2	3985243
19	10.8	0.0	6.5	chr8	131904178	131904223	(13234413)	+	(CCCTTCG)n	Simple_repeat	1	46	(0)	3987615
194	31.4	7.4	2.8	chr8	131904500	131904640	(13233996)	C	MIRc	SINE/MIR	(120)	148	1	3987616
7240	2.8	1.7	38.0	chr8	133756868	133759061	(11379575)	+	SVA_D	Retroposon/SVA	1	1385	(1)	3991149
7451	4.3	2.7	0.0	chr8	134378504	134379372	(10759264)	C	MER11D	LTR/ERVK	(0)	897	5	3992223
1757	11.4	0.3	28.1	chr8	139364898	139365435	(5773201)	C	MLT1B	LTR/ERVL-MaLR	(2)	388	1	4000247
10740	2.4	0.4	16.2	chr8	141201549	141203194	(3935442)	C	SVA_D	Retroposon/SVA	(0)	1386	2	4003338
18	18.5	4.7	6.7	chr8	141375964	141376048	(3762588)	+	(GGATCAG)n	Simple_repeat	1	89	(0)	4003560
10610	4.5	0.8	9.0	chr8	142826372	142827879	(2310757)	C	SVA_B	Retroposon/SVA	(0)	1383	1	4005353
16	16.1	2.8	1.4	chr8	143617538	143617580	(1521056)	+	G-rich	Low_complexity	1	43	(0)	4006383
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
226	12.1	0.0	0.0	chr8	143669745	143669777	(1468859)	+	Alu	SINE/Alu	2	34	(99)	4006490
303	13.6	4.3	2.9	chr8	143669777	143669844	(1468792)	C	MSTA	LTR/ERVL-MaLR	(175)	253	185	4006491
557	14.8	0.0	4.2	chr8	143669970	143670089	(1468547)	C	SVA_F	Retroposon/SVA	(783)	592	478	4006492
898	12.5	12.9	0.0	chr8	143670098	143670273	(1468363)	C	MSTA	LTR/ERVL-MaLR	(226)	202	1	4006491
2083	6.8	0.0	0.0	chr8	143714369	143714617	(1424019)	+	AluY	SINE/Alu	44	292	(19)	4006565
285	2.6	0.0	0.0	chr8	143714624	143714661	(1423975)	+	Alu	SINE/Alu	5	42	(91)	4006566
297	11.0	0.0	1.0	chr8	143714659	143714729	(1423907)	+	SVA_F	Retroposon/SVA	470	577	(798)	4006567
399	25.0	6.4	5.7	chr8	143714787	143714836	(1423800)	C	L1M4	LINE/L1	(4934)	2945	2897	4006568
2207	10.7	0.0	0.7	chr8	143714844	143715151	(1423485)	C	AluSx	SINE/Alu	(0)	312	1	4006569
1387	25.7	7.0	3.4	chr8	144125268	144125631	(1013005)	+	L1MC4	LINE/L1	7167	7535	(507)	4007142
4299	12.5	5.7	4.2	chr8	144151275	144151874	(986762)	+	LTR1A2	LTR/ERV1	227	830	(7)	4007190
258	32.3	15.3	1.2	chr8	144686723	144686885	(451751)	+	L2	LINE/L2	1151	1340	(2079)	4007919
15	10.0	0.0	7.9	chr8	144755323	144755360	(383276)	+	(CCGCC)n	Simple_repeat	1	38	(0)	4008042
957	18.8	11.2	0.0	chr8	144755894	144756122	(382514)	+	MER39B	LTR/ERV1	1	258	(395)	4008043
1398	6.9	0.0	0.0	chr8	144756123	144756295	(382341)	+	AluSx1	SINE/Alu	137	309	(3)	4008044
408	31.8	14.6	8.3	chr8	144899670	144900064	(238572)	+	L1M5	LINE/L1	4817	5240	(906)	4008268
274	21.0	5.8	0.0	chr8	144900065	144900145	(238491)	+	L1ME3G	LINE/L1	68	153	(771)	4008269
194	29.1	14.0	1.9	chr8	145051640	145051846	(86790)	+	L2	LINE/L2	2665	2900	(519)	4008471
10220	4.2	1.0	7.8	chr9	861060	862502	(137532215)	C	SVA_B	Retroposon/SVA	(0)	1383	40	4009899
16	23.2	1.9	1.9	chr9	976573	976624	(137418093)	+	G-rich	Low_complexity	1	53	(0)	4010079
462	33.3	13.7	3.2	chr9	2859735	2860171	(135534546)	+	L3	LINE/CR1	2566	3055	(1044)	4012764
46	0.0	0.0	0.0	chr9	4300209	4300247	(134094470)	+	(CA)n	Simple_repeat	1	39	(0)	4014806
4892	10.3	3.4	1.3	chr9	5432485	5433320	(132961397)	+	SVA_A	Retroposon/SVA	19	872	(515)	4016455
1688	13.9	6.9	0.9	chr9	5433329	5433669	(132961048)	+	SVA_F	Retroposon/SVA	423	785	(590)	4016456
2199	11.3	6.9	1.0	chr9	5433671	5434081	(132960636)	+	SVA_F	Retroposon/SVA	421	857	(518)	4016456
6539	9.2	3.9	26.5	chr9	5434088	5435334	(132959383)	+	SVA_A	Retroposon/SVA	421	1387	(0)	4016457
6288	7.1	2.2	6.6	chr9	6806927	6808710	(131586007)	+	SVA_F	Retroposon/SVA	57	1375	(0)	4018803
10435	3.8	2.0	3.0	chr9	6948490	6949866	(131444851)	C	SVA_C	Retroposon/SVA	(6)	1378	16	4019035
2531	5.3	0.0	3.7	chr9	14360534	14360855	(124033862)	C	AluYm1	SINE/Alu	(1)	310	1	4028853
9076	3.9	0.1	24.5	chr9	15441391	15443218	(122951499)	C	SVA_C	Retroposon/SVA	(0)	1384	3	4030551
16	22.0	0.0	6.7	chr9	15510372	15510431	(122884286)	+	G-rich	Low_complexity	1	60	(0)	4030657
407	23.7	35.4	6.5	chr9	16133529	16133872	(122260845)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	1	4031509
16277	9.8	1.5	0.8	chr9	18996975	18999256	(119395461)	+	L1P2	LINE/L1	5	2288	(3858)	4035372
1057	18.9	1.2	3.9	chr9	18999257	18999515	(119395202)	+	SVA_F	Retroposon/SVA	441	692	(683)	4035373
2018	14.7	3.2	3.3	chr9	18999516	19000000	(119394717)	+	SVA_F	Retroposon/SVA	421	857	(518)	4035373
1904	17.4	4.1	2.8	chr9	19000001	19000608	(119394109)	+	SVA_F	Retroposon/SVA	421	857	(518)	4035374
14	15.4	6.7	2.1	chr9	19230372	19230416	(119164301)	+	(CCTC)n	Simple_repeat	1	48	(0)	4035923
4629	11.5	2.2	3.9	chr9	19402919	19403940	(118990777)	+	MER11A	LTR/ERVK	1	1266	(0)	4036264
16	13.9	2.3	4.5	chr9	20622066	20622108	(117772609)	+	G-rich	Low_complexity	1	44	(0)	4038137
8601	4.7	0.8	22.5	chr9	26214191	26215961	(112178756)	C	SVA_B	Retroposon/SVA	(0)	1383	1	4045360
6113	7.0	0.0	33.8	chr9	26491971	26493979	(111900738)	+	SVA_B	Retroposon/SVA	48	1378	(9)	4045702
637	9.6	1.2	0.0	chr9	28149209	28149291	(110245426)	+	AluSc	SINE/Alu	1	84	(225)	4048142
1799	18.0	5.6	4.0	chr9	28149302	28150209	(110244508)	+	SVA_A	Retroposon/SVA	388	872	(515)	4048143
1173	17.0	1.7	3.5	chr9	28149978	28150296	(110244421)	+	SVA_F	Retroposon/SVA	386	680	(707)	4048143
7226	7.4	1.8	4.0	chr9	32691921	32693837	(105700880)	+	L1MA1	LINE/L1	5851	7721	(0)	4054046
6106	6.3	2.4	5.2	chr9	32693942	32694828	(105699889)	+	SVA_A	Retroposon/SVA	526	1387	(0)	4054052
10890	2.4	0.1	13.0	chr9	33600251	33601837	(104792880)	+	SVA_D	Retroposon/SVA	1	1382	(4)	4055727
10325	3.9	6.7	0.8	chr9	33667071	33668370	(104726347)	+	SVA_C	Retroposon/SVA	1	1381	(3)	4055805
9747	3.6	0.8	15.1	chr9	34038300	34039864	(104354853)	+	SVA_C	Retroposon/SVA	46	1384	(0)	4056546
12	14.5	4.8	4.5	chr9	34578075	34578116	(103816601)	+	G-rich	Low_complexity	1	44	(0)	4057629
19	26.0	2.2	4.4	chr9	34578159	34578247	(103816470)	+	G-rich	Low_complexity	1	91	(0)	4057629
31	26.9	5.4	1.9	chr9	34578248	34578304	(103816413)	+	(GCGA)n	Simple_repeat	3	156	(0)	4057630
12	12.8	5.6	2.6	chr9	34652039	34652074	(103742643)	+	(GGTGGA)n	Simple_repeat	1	38	(0)	4057743
23	17.4	2.9	4.2	chr9	34652148	34652217	(103742500)	+	(GCGAGG)n	Simple_repeat	1	72	(0)	4057744
13	19.8	4.0	3.9	chr9	34652418	34652467	(103742250)	+	(TGCATG)n	Simple_repeat	1	52	(0)	4057745
22	11.2	2.6	0.0	chr9	34809992	34810037	(103584680)	+	(CGC)n	Simple_repeat	1	47	(0)	4057978
308	20.7	3.9	13.3	chr9	35080271	35080443	(103314274)	+	L1M4	LINE/L1	4897	5052	(1094)	4058321
6828	9.1	3.9	48.2	chr9	35182472	35184757	(103209960)	C	SVA_A	Retroposon/SVA	(0)	1387	2	4058498
13	9.8	9.1	0.0	chr9	36036918	36036950	(102357767)	+	(AGCGGC)n	Simple_repeat	1	36	(0)	4059831
1335	9.0	0.0	0.0	chr9	36166934	36167111	(102227606)	+	AluSx1	SINE/Alu	1	178	(134)	4060087
4951	4.9	1.2	4.0	chr9	36167148	36167214	(102227503)	C	LTR8	LTR/ERV1	(54)	637	577	4060088
19	17.5	2.7	7.8	chr9	37027606	37027680	(101367037)	+	(GCC)n	Simple_repeat	1	77	(0)	4061903
347	14.9	2.6	0.0	chr9	38048208	38048281	(100346436)	C	L1ME4a	LINE/L1	(93)	6031	5956	4063838
1564	19.4	3.1	0.0	chr9	38048361	38048643	(100346074)	+	AluJr	SINE/Alu	1	292	(20)	4063839
20	17.5	2.2	0.0	chr9	40885837	40885881	(97508836)	+	(TGGT)n	Simple_repeat	1	46	(0)	4067930
859	12.0	0.0	0.0	chr9	40885894	40886001	(97508716)	C	AluSz6	SINE/Alu	(204)	108	1	4067931
1168	12.2	2.5	0.0	chr9	40886030	40886226	(97508491)	C	SVA_F	Retroposon/SVA	(730)	645	444	4067932
2487	6.8	2.3	2.0	chr9	40886224	40886567	(97508150)	+	LTR7B	LTR/ERV1	82	426	(38)	4067933
1653	20.2	5.0	1.3	chr9	40951357	40951784	(97442933)	C	L1MB4	LINE/L1	(63)	6117	5685	4067963
930	25.7	7.4	0.0	chr9	40951786	40952022	(97442695)	+	7SLRNA	srpRNA	3	258	(62)	4067964
383	20.0	1.2	0.0	chr9	40952277	40952356	(97442361)	+	7SLRNA	srpRNA	230	310	(10)	4067964
853	15.3	3.2	19.9	chr9	40952372	40952621	(97442096)	C	L1MB4	LINE/L1	(483)	5700	5483	4067963
296	22.0	5.7	2.5	chr9	41229379	41230391	(97164326)	+	(TG)n	Simple_repeat	1	1071	(0)	4068370
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
3051	15.5	2.6	0.5	chr9	62838347	62838981	(75555736)	+	TAR1	Satellite/telo	1420	2068	(43)	4073704
4404	7.1	0.4	0.2	chr9	69092142	69092694	(69302023)	C	MER41A	LTR/ERV1	(0)	554	1	4080969
1995	14.6	2.0	0.0	chr9	69192921	69193214	(69201503)	C	AluJb	SINE/Alu	(11)	301	2	4081201
18	20.1	4.4	4.2	chr9	69516200	69516267	(68878450)	+	(CCG)n	Simple_repeat	1	71	(0)	4081689
17	8.2	0.0	0.0	chr9	69517074	69517099	(68877618)	+	(TGC)n	Simple_repeat	1	26	(0)	4081690
23	25.9	3.6	1.1	chr9	69799390	69799473	(68595244)	+	(TAGA)n	Simple_repeat	1	87	(0)	4082110
13	15.4	5.6	0.0	chr9	69799528	69799563	(68595154)	+	(ATATAAT)n	Simple_repeat	1	38	(0)	4082111
5703	8.7	3.7	1.3	chr9	69799575	69800399	(68594318)	+	SVA_A	Retroposon/SVA	543	1387	(0)	4082112
14	8.1	0.0	3.6	chr9	70412567	70412594	(67982123)	+	(GGGGC)n	Simple_repeat	1	28	(0)	4083102
12	11.1	3.2	3.1	chr9	70420323	70420353	(67974364)	+	(CCCGCG)n	Simple_repeat	1	32	(0)	4083114
10720	6.0	1.1	3.7	chr9	74852455	74853873	(63540844)	+	SVA_B	Retroposon/SVA	1	1382	(1)	4090063
13	21.1	0.0	6.1	chr9	76394000	76394048	(62000669)	+	(CCCCGCT)n	Simple_repeat	1	49	(0)	4092454
18	17.2	0.0	5.9	chr9	76394543	76394593	(62000124)	+	(GCCCC)n	Simple_repeat	1	51	(0)	4092455
268	34.7	8.2	1.5	chr9	76459660	76459864	(61934853)	C	MIRb	SINE/MIR	(47)	221	2	4092595
9932	3.1	0.2	7.8	chr9	77060158	77061612	(61333105)	C	SVA_D	Retroposon/SVA	(5)	1381	38	4093663
788	22.0	0.6	0.0	chr9	79874412	79874588	(58520129)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	328	4097869
13	21.6	8.2	2.5	chr9	81689772	81689844	(56704873)	+	(TCTCC)n	Simple_repeat	1	79	(0)	4100306
1654	17.9	3.2	50.5	chr9	82430893	82431833	(55962884)	C	SVA_F	Retroposon/SVA	(518)	857	421	4101470
627	10.8	1.2	0.0	chr9	82431834	82431916	(55962801)	C	AluSc	SINE/Alu	(225)	84	1	4101471
9841	3.6	2.1	13.6	chr9	83272058	83273626	(55121091)	+	SVA_C	Retroposon/SVA	1	1384	(0)	4102611
6609	8.5	2.2	2.0	chr9	83947513	83949108	(54445609)	+	SVA_B	Retroposon/SVA	30	1387	(0)	4103801
6019	10.1	4.1	39.0	chr9	84525761	84528257	(53866460)	C	SVA_A	Retroposon/SVA	(0)	1387	20	4104870
31	14.4	1.6	1.6	chr9	85741887	85741949	(52652768)	+	(CGG)n	Simple_repeat	1	64	(0)	4106656
5301	8.8	3.9	3.8	chr9	87758582	87759887	(50634830)	C	SVA_D	Retroposon/SVA	(520)	866	53	4109955
1498	19.0	3.8	5.1	chr9	87857113	87857984	(50536733)	C	SVA_F	Retroposon/SVA	(518)	857	421	4110100
559	12.8	1.3	0.0	chr9	87857985	87858062	(50536655)	C	AluYk11	SINE/Alu	(227)	84	6	4110101
17	33.9	0.0	2.5	chr9	88534237	88534317	(49860400)	+	GA-rich	Low_complexity	1	81	(0)	4111361
23	18.5	0.0	7.7	chr9	89311427	89311504	(49083213)	+	G-rich	Low_complexity	1	78	(0)	4112389
27	19.2	10.4	0.8	chr9	90642901	90643015	(47751702)	+	(CGCCCTG)n	Simple_repeat	1	127	(0)	4114122
618	9.6	1.2	0.0	chr9	92105424	92105506	(46289211)	+	AluSc	SINE/Alu	1	84	(225)	4116202
837	15.1	4.9	2.5	chr9	92105507	92105701	(46289016)	+	SVA_F	Retroposon/SVA	453	615	(760)	4116203
1824	18.6	3.3	2.5	chr9	92105668	92106186	(46288531)	+	SVA_F	Retroposon/SVA	421	857	(518)	4116204
7366	6.8	2.9	6.9	chr9	92226805	92228143	(46166574)	C	SVA_D	Retroposon/SVA	(0)	1386	70	4116376
248	30.4	14.0	2.3	chr9	93946228	93946618	(44448099)	+	L2b	LINE/L2	2932	3375	(0)	4118810
9279	6.0	0.4	14.0	chr9	97129738	97131289	(41263428)	C	SVA_A	Retroposon/SVA	(0)	1387	48	4124046
5413	8.4	2.4	1.5	chr9	97497786	97498944	(40895773)	C	SVA_B	Retroposon/SVA	(342)	1042	1	4124591
6484	7.2	2.5	5.1	chr9	97795944	97797652	(40597065)	+	SVA_D	Retroposon/SVA	128	1378	(8)	4125152
9953	6.2	0.7	10.1	chr9	98463604	98465134	(39929583)	+	SVA_A	Retroposon/SVA	2	1387	(0)	4126572
8803	5.5	1.6	19.7	chr9	100392185	100393882	(38000835)	+	SVA_A	Retroposon/SVA	1	1387	(0)	4130031
188	24.6	11.5	1.4	chr9	101398283	101398352	(36996365)	C	MIRb	SINE/MIR	(113)	155	78	4131635
8752	6.5	0.6	16.8	chr9	102602679	102604330	(35790387)	C	SVA_B	Retroposon/SVA	(0)	1383	1	4133274
7391	6.1	0.1	26.5	chr9	104234246	104236110	(34158607)	C	SVA_A	Retroposon/SVA	(13)	1374	3	4135432
9498	7.9	2.5	3.1	chr9	104316037	104317433	(34077284)	+	SVA_A	Retroposon/SVA	1	1387	(0)	4135567
7298	3.7	2.8	0.0	chr9	104394521	104395392	(33999325)	C	MER11D	LTR/ERVK	(0)	897	1	4135696
2307	7.5	0.3	2.6	chr9	104764541	104764845	(33629872)	C	AluSx3	SINE/Alu	(13)	298	1	4136224
7281	5.0	2.7	0.1	chr9	111591784	111592657	(26802060)	+	MER11D	LTR/ERVK	1	897	(0)	4148170
4477	8.3	2.4	3.0	chr9	112391953	112392990	(26001727)	C	MER11A	LTR/ERVK	(0)	1266	1	4149752
4663	7.5	2.7	1.6	chr9	112399090	112400106	(25994611)	C	MER11A	LTR/ERVK	(0)	1266	1	4149752
955	34.0	4.7	2.7	chr9	113062933	113063595	(25331122)	+	L1MA9	LINE/L1	5622	6298	(14)	4150944
723	18.4	0.9	0.0	chr9	113137142	113137255	(25257462)	+	FLAM_A	SINE/Alu	2	116	(26)	4151051
336	22.3	6.2	10.4	chr9	113137482	113137616	(25257101)	C	Charlie4z	DNA/hAT-Charlie	(35)	132	4	4151052
275	26.0	2.9	0.0	chr9	114156640	114156739	(24237978)	C	MIR3	SINE/MIR	(15)	193	91	4153077
34	0.0	3.0	0.0	chr9	114157072	114157104	(24237613)	+	(CA)n	Simple_repeat	1	34	(0)	4153078
11	13.9	2.0	10.0	chr9	120929026	120929074	(17465643)	+	G-rich	Low_complexity	1	50	(0)	4166014
246	26.9	4.1	5.2	chr9	122099547	122099679	(16295038)	+	L2b	LINE/L2	3007	3142	(245)	4168300
6632	6.6	1.9	5.2	chr9	122851488	122853397	(15541320)	+	SVA_D	Retroposon/SVA	20	1385	(1)	4169658
7367	3.5	3.0	1.5	chr9	123586950	123587830	(14806887)	C	MER11D	LTR/ERVK	(0)	897	3	4170965
249	23.9	5.4	5.4	chr9	123587831	123587849	(14806868)	C	MIRb	SINE/MIR	(218)	50	36	4170964
10226	2.7	0.0	16.4	chr9	125458216	125459873	(12934844)	C	SVA_D	Retroposon/SVA	(0)	1386	1	4174730
9407	2.3	0.1	29.8	chr9	125576480	125578451	(12816266)	+	SVA_D	Retroposon/SVA	1	1386	(0)	4174916
6698	3.7	0.0	40.1	chr9	125779256	125781570	(12613147)	C	SVA_D	Retroposon/SVA	(0)	1386	1	4175308
1435	15.7	7.4	5.5	chr9	128159643	128159935	(10234782)	+	AluJb	SINE/Alu	1	299	(13)	4179863
10308	3.0	0.1	17.7	chr9	128779485	128781166	(9613551)	+	SVA_D	Retroposon/SVA	1	1386	(0)	4181314
13	21.7	0.0	2.6	chr9	129236842	129236880	(9157837)	+	(CCCTC)n	Simple_repeat	1	39	(0)	4182391
1644	15.4	0.0	5.5	chr9	131046181	131046503	(7348214)	C	AluJb	SINE/Alu	(0)	312	6	4186268
766	13.4	8.0	0.8	chr9	131046506	131046518	(7348199)	C	AluJo	SINE/Alu	(174)	138	126	4186269
27	0.0	0.0	0.0	chr9	131046519	131046544	(7348173)	+	(T)n	Simple_repeat	1	26	(0)	4186270
766	13.4	8.0	0.8	chr9	131046545	131046657	(7348060)	C	AluJo	SINE/Alu	(193)	119	2	4186269
15	20.4	1.5	7.6	chr9	131531183	131531247	(6863470)	+	(CCGCGC)n	Simple_repeat	1	66	(0)	4187226
10207	4.7	0.7	5.1	chr9	134075176	134076577	(4318140)	+	SVA_B	Retroposon/SVA	42	1382	(1)	4191497
212	31.4	2.3	6.5	chr9	135273369	135273460	(3121257)	C	MIRc	SINE/MIR	(69)	199	112	4192977
312	24.6	13.7	0.0	chr9	135273535	135273660	(3121057)	C	MIR3	SINE/MIR	(11)	197	52	4192978
20	18.4	0.0	0.0	chr9	136610344	136610380	(1784337)	+	G-rich	Low_complexity	1	37	(0)	4194545
2273	8.9	1.3	2.2	chr9	137085364	137085676	(1309041)	C	AluSx1	SINE/Alu	(2)	310	1	4195208
226	12.5	9.4	0.0	chr9	137085679	137085726	(1308991)	C	MER65D	LTR/ERV1	(135)	338	286	4195209
2466	7.1	0.0	0.0	chr9	137561867	137562163	(832554)	C	AluY	SINE/Alu	(14)	297	1	4195791
2411	18.6	9.2	1.9	chr9	137562164	137562608	(832109)	+	L1MC4	LINE/L1	2626	3118	(3096)	4195786
11	18.6	0.0	7.1	chr9	137606258	137606299	(788418)	+	(CGCCCCC)n	Simple_repeat	1	42	(0)	4195863
264	24.8	3.7	7.9	chr9	137689141	137689254	(705463)	C	L1ME3G	LINE/L1	(9)	915	807	4196039
12	16.9	4.8	7.7	chrX	3815886	3815947	(152224948)	+	(GGCCTGG)n	Simple_repeat	1	65	(0)	4365656
7777	3.0	0.1	0.1	chrX	6355220	6356116	(149684779)	C	MER11D	LTR/ERVK	(0)	897	1	4369985
656	31.8	9.1	4.8	chrX	8501691	8502195	(147538700)	+	L1M5	LINE/L1	2809	3337	(2809)	4373270
4969	4.4	3.9	2.7	chrX	8502208	8502910	(147537985)	+	SVA_A	Retroposon/SVA	676	1387	(0)	4373271
218	26.4	1.4	5.3	chrX	11539678	11539753	(144501142)	C	L2a	LINE/L2	(7)	3419	3347	4378188
28	0.0	0.0	0.0	chrX	11539942	11539968	(144500927)	+	(AAACA)n	Simple_repeat	1	27	(0)	4378189
2422	11.0	0.0	0.0	chrX	11539974	11540283	(144500612)	+	AluSg4	SINE/Alu	1	310	(0)	4378190
1400	23.5	4.1	0.5	chrX	12790647	12791018	(143249877)	C	MER58D	DNA/hAT-Charlie	(0)	386	1	4380114
20	30.5	2.3	1.1	chrX	12791390	12791475	(143249420)	+	(GCC)n	Simple_repeat	1	88	(0)	4380115
18	16.7	6.1	4.3	chrX	14030226	14030291	(142010604)	+	(CTTT)n	Simple_repeat	1	70	(0)	4382166
180	17.5	0.0	13.0	chrX	14030346	14030391	(142010504)	C	MIR1_Amn	SINE/MIR	(162)	68	29	4382167
7812	2.7	0.0	0.2	chrX	14848131	14849029	(141191866)	+	MER11D	LTR/ERVK	1	897	(0)	4383334
29	26.9	5.8	4.5	chrX	16869818	16870025	(139170870)	+	(GCCCCGC)n	Simple_repeat	1	220	(0)	4386870
8952	2.5	0.1	28.5	chrX	16967841	16969776	(139071119)	C	SVA_D	Retroposon/SVA	(0)	1386	1	4387087
8780	6.1	1.3	13.2	chrX	17244279	17245797	(138795098)	C	SVA_A	Retroposon/SVA	(0)	1387	53	4387539
5905	7.4	4.1	2.2	chrX	17274906	17275750	(138765145)	C	SVA_A	Retroposon/SVA	(0)	1387	527	4387582
804	34.4	9.1	1.8	chrX	17275754	17276243	(138764652)	+	L2c	LINE/L2	2848	3372	(15)	4387583
2709	14.8	3.0	0.4	chrX	17430510	17431045	(138609850)	C	L1MB7	LINE/L1	(1)	6183	5587	4387832
4835	7.7	2.9	1.3	chrX	21807951	21808962	(134231933)	C	MER11A	LTR/ERVK	(0)	1266	1	4394956
5979	10.2	4.9	31.7	chrX	23522826	23524122	(132516773)	+	SVA_A	Retroposon/SVA	435	1387	(0)	4397598
224	33.6	5.9	0.0	chrX	24298485	24298612	(131742283)	+	L2	LINE/L2	2137	2272	(1147)	4399257
8178	4.8	0.9	21.6	chrX	27457866	27459560	(128581335)	+	SVA_A	Retroposon/SVA	48	1387	(0)	4403844
15	0.0	0.0	0.0	chrX	31266912	31266930	(124773965)	+	(CGC)n	Simple_repeat	1	19	(0)	4409508
13	28.4	3.3	1.6	chrX	31266961	31267021	(124773874)	+	(GCCGG)n	Simple_repeat	1	63	(0)	4409509
32	4.3	4.2	0.0	chrX	31267089	31267136	(124773759)	+	(GAAA)n	Simple_repeat	1	50	(0)	4409510
7226	4.2	2.8	0.9	chrX	37297197	37298076	(118742819)	C	MER11D	LTR/ERVK	(0)	897	1	4417227
17	15.7	0.0	6.2	chrX	40097513	40097560	(115943335)	+	G-rich	Low_complexity	1	48	(0)	4421760
15	12.2	0.0	0.0	chrX	40097719	40097745	(115943150)	+	(TGTG)n	Simple_repeat	1	27	(0)	4421761
14	19.6	2.2	4.3	chrX	40097789	40097833	(115943062)	+	(CCG)n	Simple_repeat	1	46	(0)	4421762
655	7.1	0.0	0.0	chrX	41473098	41473182	(114567713)	C	PABL_A	LTR/ERV1	(575)	85	1	4424487
21	25.8	1.7	6.8	chrX	41473494	41473617	(114567278)	+	(GCCTGC)n	Simple_repeat	1	117	(0)	4424490
7267	4.2	2.6	0.1	chrX	43028039	43028913	(113011982)	C	MER11D	LTR/ERVK	(0)	897	1	4426774
1546	24.7	5.1	0.5	chrX	44432391	44432805	(111608090)	+	LTR16A	LTR/ERVL	17	451	(0)	4428851
876	16.5	0.0	0.0	chrX	44432837	44432963	(111607932)	+	AluJo	SINE/Alu	1	127	(185)	4428852
9085	5.4	0.4	18.4	chrX	45503256	45504943	(110535952)	C	SVA_B	Retroposon/SVA	(0)	1383	1	4430852
5442	7.7	4.0	5.2	chrX	46274734	46275710	(109765185)	+	SVA_F	Retroposon/SVA	38	857	(518)	4431889
6088	6.8	2.9	2.5	chrX	46395852	46397039	(109643856)	C	SVA_D	Retroposon/SVA	(518)	868	6	4432079
1553	17.9	5.6	1.6	chrX	47965468	47965830	(108075065)	+	SVA_F	Retroposon/SVA	425	802	(573)	4435082
9635	2.4	0.4	21.3	chrX	48114626	48116365	(107924530)	+	SVA_D	Retroposon/SVA	13	1386	(0)	4435359
11078	3.3	0.1	6.1	chrX	48221747	48223217	(107817678)	+	SVA_D	Retroposon/SVA	1	1382	(4)	4435600
8715	4.1	1.4	29.6	chrX	51118584	51120517	(104920378)	C	SVA_B	Retroposon/SVA	(0)	1383	3	4440279
9002	3.3	0.0	20.2	chrX	51279256	51280864	(104760031)	+	SVA_D	Retroposon/SVA	1	1363	(23)	4440440
15	19.0	2.6	0.0	chrX	51803443	51803480	(104237415)	+	(CTCCTAC)n	Simple_repeat	1	39	(0)	4441139
7111	6.7	1.5	3.7	chrX	53503416	53505081	(102535814)	+	SVA_C	Retroposon/SVA	32	1381	(3)	4443923
7741	6.2	4.1	14.2	chrX	54572012	54573505	(101467390)	C	SVA_A	Retroposon/SVA	(3)	1384	48	4446106
4492	5.2	0.7	6.2	chrX	55371213	55371886	(100669009)	C	SVA_A	Retroposon/SVA	(12)	1375	439	4447078
844	16.6	1.4	0.0	chrX	55371879	55372044	(100668851)	C	MSTD	LTR/ERVL-MaLR	(39)	357	145	4447076
5602	13.7	2.3	2.2	chrX	55372045	55373651	(100667244)	C	L1MA4	LINE/L1	(10)	6290	4661	4447079
5431	9.3	3.2	2.8	chrX	56379479	56381211	(99659684)	C	SVA_C	Retroposon/SVA	(7)	1377	1	4448140
8901	6.4	0.6	10.0	chrX	65391765	65393265	(90647630)	+	SVA_B	Retroposon/SVA	25	1383	(0)	4452283
1424	20.7	1.0	0.7	chrX	68478524	68478820	(87562075)	+	L1MB8	LINE/L1	4693	4990	(1156)	4456394
5230	5.7	3.8	2.9	chrX	68478821	68479520	(87561375)	+	SVA_A	Retroposon/SVA	681	1387	(0)	4456414
6925	4.8	0.0	36.7	chrX	70348353	70350539	(85690356)	C	SVA_A	Retroposon/SVA	(0)	1387	3	4459531
1644	19.4	2.7	4.6	chrX	71269732	71270271	(84770624)	C	SVA_E	Retroposon/SVA	(518)	864	421	4461158
7355	12.4	1.0	1.4	chrX	71270272	71271283	(84769612)	+	HERVH-int	LTR/ERV1	4853	5870	(1843)	4461156
9478	5.4	0.4	11.1	chrX	71644371	71645918	(84394977)	C	SVA_B	Retroposon/SVA	(0)	1383	1	4462004
5180	9.6	3.6	1.6	chrX	71675148	71676002	(84364893)	+	SVA_A	Retroposon/SVA	1	872	(515)	4462046
1837	13.5	6.6	1.9	chrX	71676009	71676424	(84364471)	+	SVA_F	Retroposon/SVA	421	857	(518)	4462046
6325	8.6	4.1	18.1	chrX	71676432	71677552	(84363343)	+	SVA_A	Retroposon/SVA	422	1386	(1)	4462047
6940	8.1	2.8	3.8	chrX	71876247	71877783	(84163112)	C	SVA_B	Retroposon/SVA	(1)	1382	8	4462306
7028	6.7	0.1	30.2	chrX	73020862	73022803	(83018092)	C	SVA_A	Retroposon/SVA	(0)	1387	31	4464157
5111	10.9	2.3	40.0	chrX	73067352	73068311	(82972584)	+	SVA_A	Retroposon/SVA	54	872	(515)	4464182
1977	12.7	7.8	2.4	chrX	73068312	73068724	(82972171)	+	SVA_F	Retroposon/SVA	421	857	(518)	4464182
1450	16.2	9.6	53.0	chrX	73068731	73069202	(82971693)	+	SVA_F	Retroposon/SVA	421	857	(518)	4464182
6232	12.2	4.7	33.4	chrX	73069205	73070552	(82970343)	+	SVA_A	Retroposon/SVA	422	1385	(2)	4464183
30	12.2	4.8	0.0	chrX	73944168	73944229	(82096666)	+	(ACGGCA)n	Simple_repeat	1	65	(0)	4464971
9284	4.9	0.4	15.7	chrX	74097733	74099338	(81941557)	+	SVA_B	Retroposon/SVA	1	1360	(23)	4465176
5580	8.6	5.0	6.2	chrX	74165721	74166910	(81873985)	+	SVA_D	Retroposon/SVA	38	870	(517)	4465221
5647	7.7	3.6	20.3	chrX	74166504	74167007	(81873888)	+	SVA_D	Retroposon/SVA	422	842	(544)	4465221
8800	2.5	0.4	29.4	chrX	74567907	74569859	(81471036)	C	SVA_D	Retroposon/SVA	(0)	1386	3	4465836
6176	10.3	3.9	50.1	chrX	75333929	75336363	(80704532)	C	SVA_A	Retroposon/SVA	(1)	1386	3	4466639
4551	4.0	2.2	0.2	chrX	77065323	77065851	(78975044)	C	L1PA4	LINE/L1	(0)	6155	5616	4467981
4148	9.6	10.6	2.0	chrX	77066030	77066681	(78974214)	+	SVA_A	Retroposon/SVA	670	1384	(3)	4467982
11314	2.5	0.3	12.6	chrX	77765691	77767271	(78273624)	C	SVA_D	Retroposon/SVA	(0)	1386	1	4468797
7165	3.8	3.9	0.3	chrX	83070435	83071299	(72969596)	+	MER11D	LTR/ERVK	1	897	(0)	4474502
4771	10.1	2.2	1.6	chrX	84850868	84851875	(71189020)	+	MER11A	LTR/ERVK	1	1266	(0)	4476349
1182	15.7	6.3	0.9	chrX	84851876	84852099	(71188796)	+	MER89	LTR/ERV1	323	559	(0)	4476348
1516	12.9	9.4	0.6	chrX	92821154	92821473	(63219422)	C	MER51-int	LTR/ERV1	(4755)	3061	2711	4484942
300	12.0	0.0	0.0	chrX	92821491	92821540	(63219355)	+	SVA_F	Retroposon/SVA	808	857	(518)	4484943
1567	20.3	3.5	3.9	chrX	92821507	92822072	(63218823)	+	SVA_F	Retroposon/SVA	421	857	(518)	4484944
8776	3.6	0.2	17.9	chrX	97274642	97276308	(58764587)	C	SVA_C	Retroposon/SVA	(0)	1384	14	4490408
6214	7.2	2.7	4.4	chrX	100723149	100724888	(55316007)	+	SVA_D	Retroposon/SVA	58	1386	(0)	4494722
8880	8.0	2.3	3.6	chrX	101738423	101739716	(54301179)	+	SVA_A	Retroposon/SVA	1	1276	(111)	4496411
333	19.4	6.0	0.0	chrX	102769446	102769538	(53271357)	+	MIRb	SINE/MIR	112	218	(50)	4497628
24244	6.6	0.8	0.2	chrX	110229539	110232609	(45808286)	+	L1PA6	LINE/L1	180	3254	(3065)	4508111
15752	10.7	4.7	0.1	chrX	110554450	110557811	(45483084)	C	L1PA8	LINE/L1	(8)	6164	2653	4508592
1611	19.1	4.3	3.1	chrX	110557915	110558904	(45481991)	C	SVA_F	Retroposon/SVA	(515)	872	420	4508593
13529	13.7	1.2	4.5	chrX	110558907	110561867	(45479028)	C	L1PA10	LINE/L1	(3476)	2855	1	4508594
6038	8.2	2.7	30.3	chrX	115346495	115348243	(40692652)	C	SVA_F	Retroposon/SVA	(0)	1375	382	4515348
17	8.3	0.0	0.0	chrX	120469184	120469209	(35571686)	+	(GGC)n	Simple_repeat	1	26	(0)	4522978
12	23.9	0.0	2.4	chrX	120561001	120561041	(35479854)	+	G-rich	Low_complexity	1	41	(0)	4523167
13	18.2	0.0	0.0	chrX	120561247	120561277	(35479618)	+	(CGCTCC)n	Simple_repeat	1	31	(0)	4523168
8500	12.2	3.0	1.6	chrX	122652737	122655369	(33385526)	+	L1MA3	LINE/L1	2325	4996	(2569)	4525672
5069	6.2	4.6	2.5	chrX	122655370	122656086	(33384809)	+	SVA_A	Retroposon/SVA	655	1387	(0)	4525673
9966	11.3	3.6	1.9	chrX	123569887	123573213	(32467682)	+	L1PBa	LINE/L1	537	3900	(2962)	4526948
10934	2.9	0.2	8.2	chrX	123733494	123734995	(32305900)	+	SVA_D	Retroposon/SVA	1	1382	(4)	4527197
2750	14.9	11.9	9.4	chrX	123846525	123846912	(32193983)	+	LTR8B	LTR/ERV1	210	654	(166)	4527500
767	12.2	19.6	0.0	chrX	123846913	123847043	(32193852)	+	AluSx3	SINE/Alu	136	298	(13)	4527501
2750	14.9	11.9	9.4	chrX	123847044	123847248	(32193647)	+	LTR8B	LTR/ERV1	655	820	(0)	4527500
7386	2.7	0.0	38.3	chrX	129849745	129851969	(26188926)	+	SVA_D	Retroposon/SVA	1	1368	(18)	4535429
1673	14.5	1.7	0.0	chrX	131968195	131968429	(24072466)	C	AluJr	SINE/Alu	(73)	239	1	4538719
5329	19.0	2.5	1.5	chrX	131968430	131969647	(24071248)	+	L1MA4	LINE/L1	6403	7712	(7)	4538716
23	10.0	0.0	0.0	chrX	133266117	133266149	(22774746)	+	(A)n	Simple_repeat	1	33	(0)	4540643
20	11.8	2.7	0.0	chrX	133266284	133266325	(22774570)	+	(TTG)n	Simple_repeat	1	43	(0)	4540644
481	10.3	0.0	3.3	chrX	133266428	133266517	(22774378)	C	SVA_F	Retroposon/SVA	(783)	592	506	4540645
1905	12.1	3.1	1.4	chrX	133266526	133266677	(22774218)	C	AluSx1	SINE/Alu	(25)	287	137	4540646
2473	7.4	0.0	0.0	chrX	133266678	133266973	(22773922)	C	AluY	SINE/Alu	(15)	296	1	4540647
10446	4.7	0.5	2.7	chrX	134285344	134286737	(21754158)	C	SVA_B	Retroposon/SVA	(2)	1381	19	4542395
7358	4.5	2.9	0.0	chrX	135023852	135024722	(21016173)	+	MER11D	LTR/ERVK	1	897	(0)	4543831
18	23.8	5.6	1.3	chrX	135438457	135438527	(20602368)	+	(AGC)n	Simple_repeat	1	75	(0)	4544331
673	26.9	9.5	8.0	chrX	149718913	149719276	(6321619)	+	MLT1I	LTR/ERVL-MaLR	42	411	(0)	4564964
443	33.5	8.8	3.2	chrX	149719340	149719906	(6320989)	C	L1ME3G	LINE/L1	(39)	885	284	4564965
1802	17.0	0.0	3.8	chrX	151073362	151073682	(4967213)	C	AluJb	SINE/Alu	(0)	312	3	4567063
232	13.9	0.0	0.0	chrX	151073715	151073750	(4967145)	+	L1MA5	LINE/L1	6062	6097	(203)	4567064
1183	17.4	1.2	2.4	chrX	151073857	151074103	(4966792)	C	SVA_F	Retroposon/SVA	(710)	665	422	4567065
2382	5.7	1.1	0.3	chrX	151074118	151074399	(4966496)	C	AluSp	SINE/Alu	(29)	284	1	4567066
24	19.4	4.5	4.3	chrX	151397071	151397159	(4643736)	+	(GCGCC)n	Simple_repeat	1	93	(0)	4567572
335	28.9	3.9	4.1	chrX	151397603	151397760	(4643135)	+	L2c	LINE/L2	3199	3386	(1)	4567573
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638