3686	12.6	6.2	2.5	chr1	180999	181980	(248774442)	C	TAR1	Satellite/telo	(399)	1018	1	269
13	23.3	0.0	2.4	chr1	3352487	3352528	(245603894)	+	(CTTTC)n	Simple_repeat	1	42	(0)	3934
1535	0.0	0.0	0.0	chr1	16514122	16514285	(232442137)	C	U1	snRNA	(1)	164	1	27677
15	17.0	0.0	0.0	chr1	16913990	16914022	(232042400)	+	(CCCCGC)n	Simple_repeat	1	33	(0)	28246
234	35.9	3.3	0.7	chr1	16914490	16914635	(232041787)	C	MIRb	SINE/MIR	(23)	245	96	28247
51	0.0	0.0	0.0	chr1	18177393	18177436	(230778986)	+	(GT)n	Simple_repeat	1	44	(0)	31101
374	28.3	2.4	2.4	chr1	18922754	18922876	(230033546)	C	MIR3	SINE/MIR	(44)	164	42	32701
198	35.7	6.7	2.6	chr1	20633053	20633167	(228323255)	+	MIR3	SINE/MIR	22	141	(67)	36237
219	35.1	8.8	0.0	chr1	20633135	20633248	(228323174)	+	MIRb	SINE/MIR	115	239	(29)	36238
21	21.1	0.0	3.5	chr1	20633486	20633543	(228322879)	+	(CGG)n	Simple_repeat	1	58	(0)	36239
12	21.0	0.0	7.8	chr1	20633687	20633737	(228322685)	+	(GGCTCG)n	Simple_repeat	1	51	(0)	36240
2705	4.2	0.0	0.0	chr1	24755989	24756297	(224200125)	C	AluY	SINE/Alu	(1)	310	2	45673
2389	8.2	0.0	0.0	chr1	28328414	28328707	(220627715)	C	AluSz	SINE/Alu	(18)	294	1	53910
1790	15.1	0.0	0.3	chr1	28505413	28505711	(220450711)	C	AluSz6	SINE/Alu	(13)	299	2	54373
384	29.4	2.7	2.7	chr1	28648880	28649025	(220307397)	+	AluJr4	SINE/Alu	11	156	(156)	54782
6250	13.3	3.1	2.2	chr1	32448198	32449195	(216507227)	+	LTR13	LTR/ERVK	1	1007	(0)	62858
24	25.4	3.8	0.0	chr1	32964720	32964798	(215991624)	+	(CGC)n	Simple_repeat	1	82	(0)	64114
208	32.4	7.2	1.1	chr1	37990316	37990440	(210965982)	+	MIR3	SINE/MIR	15	154	(114)	73868
742	23.4	10.8	2.9	chr1	40507946	40508041	(208448381)	C	L1M5	LINE/L1	(1193)	4953	4836	78951
18	0.0	7.1	0.0	chr1	40508087	40508114	(208448308)	+	(AAAT)n	Simple_repeat	1	30	(0)	78954
731	16.3	0.0	2.8	chr1	44730545	44730685	(204225737)	+	AluJr	SINE/Alu	175	311	(1)	86587
1001	16.8	11.2	0.0	chr1	44730709	44730899	(204225523)	+	AluSx4	SINE/Alu	7	221	(89)	86588
632	17.4	0.0	0.9	chr1	44731055	44731170	(204225252)	C	U5	snRNA	(1)	115	1	86589
757	24.1	2.4	0.6	chr1	44819664	44819825	(204136597)	C	AluSx	SINE/Alu	(35)	277	113	86771
588	11.6	2.1	0.0	chr1	44819903	44819997	(204136425)	C	U5	snRNA	(19)	97	1	86772
466	29.0	2.2	3.3	chr1	54950817	54950998	(194005424)	C	MamRep564	Unknown	(70)	287	108	106214
368	18.7	14.0	4.7	chr1	54951101	54951141	(194005281)	+	MIRb	SINE/MIR	67	112	(156)	106215
3452	17.0	2.0	7.5	chr1	54951142	54951873	(194004549)	C	LTR8	LTR/ERV1	(0)	691	1	106216
47	0.0	0.0	0.0	chr1	56249738	56249777	(192706645)	+	(AC)n	Simple_repeat	1	40	(0)	108470
208	25.6	14.0	2.5	chr1	56571115	56571234	(192385188)	+	MIR3	SINE/MIR	23	158	(50)	109104
378	26.5	13.8	4.0	chr1	56571247	56571473	(192384949)	C	MIRb	SINE/MIR	(1)	261	3	109105
2698	24.0	8.2	2.1	chr1	57432956	57434560	(191521862)	+	L1ME2	LINE/L1	4358	6077	(87)	110801
13	17.6	2.4	4.7	chr1	60636378	60636419	(188320003)	+	A-rich	Low_complexity	1	43	(0)	116873
21	30.3	4.3	4.1	chr1	60636640	60636801	(188319621)	+	GA-rich	Low_complexity	1	169	(0)	116874
323	27.2	13.9	3.3	chr1	63522598	63522758	(185433664)	C	MIR3	SINE/MIR	(28)	180	8	122200
22	20.2	7.4	1.1	chr1	63523647	63523727	(185432695)	+	(TCTCTG)n	Simple_repeat	1	87	(0)	122201
6555	11.7	13.7	1.7	chr1	64184166	64184714	(184771708)	C	Tigger3b	DNA/TcMar-Tigger	(0)	1231	530	123452
28005	1.8	0.0	0.1	chr1	65558565	65564576	(183391846)	C	L1PA2	LINE/L1	(16)	6139	127	125968
460	27.7	9.9	0.0	chr1	65564650	65564804	(183391618)	C	MIR3	SINE/MIR	(7)	201	30	125970
3958	15.3	4.5	3.2	chr1	67249146	67251170	(181705252)	C	MER57-int	LTR/ERV1	(2208)	5329	3592	128486
580	29.3	7.0	1.8	chr1	67719613	67719841	(181236581)	C	MIRb	SINE/MIR	(0)	268	27	129466
27	27.3	2.6	3.3	chr1	76074604	76074720	(172881702)	+	G-rich	Low_complexity	1	120	(0)	140897
12	22.1	0.0	0.0	chr1	77281649	77281680	(171674742)	+	(GTGTGT)n	Simple_repeat	1	32	(0)	142614
12	20.6	1.7	8.3	chr1	77281880	77281938	(171674484)	+	(GCGCG)n	Simple_repeat	1	60	(0)	142615
1509	24.2	14.3	1.3	chr1	78617589	78618057	(170338365)	+	LTR41	LTR/ERVL	5	544	(224)	144818
17	26.9	1.8	1.8	chr1	81306144	81306198	(167650224)	+	(CT)n	Simple_repeat	1	56	(0)	148266
435	18.2	9.2	0.0	chr1	91884623	91884721	(157071701)	+	MIR	SINE/MIR	82	190	(72)	163406
448	26.5	3.3	0.0	chr1	91885013	91885129	(157071293)	C	MIR	SINE/MIR	(22)	240	120	163407
316	22.0	2.9	5.7	chr1	92052795	92052900	(156903522)	C	L1MC5	LINE/L1	(8)	9296	9194	163787
1188	33.5	9.2	3.7	chr1	92052958	92054004	(156902418)	C	L2b	LINE/L2	(0)	3375	2257	163788
742	17.2	1.7	0.0	chr1	92804447	92804562	(156151860)	+	AluJr	SINE/Alu	1	118	(194)	165125
38	0.0	0.0	2.5	chr1	92804564	92804603	(156151819)	+	(AAATA)n	Simple_repeat	1	40	(0)	165126
610	22.3	13.7	7.3	chr1	92804604	92804654	(156151768)	C	L2	LINE/L2	(1347)	2072	2013	165124
1516	19.5	4.4	0.3	chr1	92804657	92804960	(156151462)	C	MER65D	LTR/ERV1	(0)	473	157	165127
835	15.8	0.8	0.0	chr1	92805001	92805127	(156151295)	+	AluJb	SINE/Alu	6	133	(179)	165128
920	15.4	7.8	1.3	chr1	100895397	100895552	(148060870)	+	AluJb	SINE/Alu	137	303	(9)	177179
563	30.1	3.4	0.3	chr1	108531272	108531466	(140424956)	C	L4_B_Mam	LINE/RTE-X	(915)	4075	3877	186877
296	29.6	5.7	2.5	chr1	108691739	108691856	(140264566)	C	MIRb	SINE/MIR	(24)	244	123	187163
195	25.9	5.5	1.2	chr1	113072597	113072682	(135883740)	C	L2c	LINE/L2	(11)	3376	3287	194421
33	2.9	0.0	0.0	chr1	114282831	114282865	(134673557)	+	(TTG)n	Simple_repeat	1	35	(0)	196340
2437	7.8	1.3	0.0	chr1	114780959	114781265	(134175157)	C	AluSz	SINE/Alu	(1)	311	1	197271
2597	8.4	5.0	1.9	chr1	144101293	144106919	(104849503)	+	(TGGCTGGCT)n	Simple_repeat	1	5911	(0)	208844
22	22.9	0.0	0.0	chr1	144412465	144412510	(104543912)	+	G-rich	Low_complexity	1	46	(0)	209361
1273	10.3	0.0	0.6	chr1	144412576	144412741	(104543681)	+	U1	snRNA	1	165	(0)	209362
642	18.1	19.5	15.4	chr1	144413100	144413392	(104543030)	C	AluSz	SINE/Alu	(0)	312	5	209363
302	21.5	7.1	0.0	chr1	144551260	144551324	(104405098)	+	MER45B	DNA/hAT-Tip100	311	380	(660)	209606
1290	7.3	0.0	0.6	chr1	144551779	144551943	(104404479)	C	U1	snRNA	(1)	164	1	209607
1305	7.9	0.0	0.6	chr1	145281116	145281281	(103675141)	+	U1	snRNA	1	165	(0)	210764
595	17.9	19.5	14.5	chr1	145281642	145281931	(103674491)	C	AluSz	SINE/Alu	(0)	312	5	210765
637	2.8	0.0	0.0	chr1	146038044	146038115	(102918307)	+	tRNA-His-CAY_	tRNA	1	72	(3)	211993
1391	13.4	6.5	6.5	chr1	146038261	146038383	(102918039)	+	AluJb	SINE/Alu	1	125	(187)	211994
1597	0.0	0.0	0.0	chr1	146376807	146376970	(102579452)	+	U1	snRNA	1	164	(1)	212533
676	20.6	4.9	0.0	chr1	148334612	148334766	(100621656)	C	U1	snRNA	(1)	164	2	215516
2228	8.9	0.3	0.0	chr1	148335176	148335467	(100620955)	C	AluSx	SINE/Alu	(19)	293	1	215517
24	15.6	1.1	0.0	chr1	148522481	148522534	(100433888)	+	G-rich	Low_complexity	1	54	(0)	215837
1272	7.9	0.0	0.6	chr1	148522601	148522766	(100433656)	+	U1	snRNA	1	165	(0)	215838
223	20.0	9.1	0.0	chr1	153966844	153966893	(94989529)	+	Tigger19b	DNA/TcMar-Tigger	365	419	(131)	225149
321	26.6	3.1	3.9	chr1	153966966	153967094	(94989328)	+	MIRc	SINE/MIR	124	251	(17)	225150
1144	15.2	0.0	0.6	chr1	153967505	153967681	(94988741)	+	AluJb	SINE/Alu	137	312	(0)	225151
21938	18.5	6.2	5.6	chr1	155693985	155697375	(93259047)	C	HERVKC4-int	LTR/ERVK	(1313)	3949	525	228566
5846	12.8	14.5	2.0	chr1	155697376	155698454	(93257968)	C	MER11B	LTR/ERVK	(0)	1236	1	228568
660	0.0	0.0	0.0	chr1	161531113	161531184	(87425238)	+	tRNA-Gly-GGA	tRNA	1	72	(3)	237673
503	10.0	0.0	0.0	chr1	161612718	161612787	(87343635)	+	tRNA-Gly-GGA	tRNA	1	70	(5)	237810
15	4.6	17.8	0.0	chr1	165698592	165698636	(83257786)	+	G-rich	Low_complexity	1	53	(0)	244109
12	4.7	0.0	7.7	chr1	171741943	171741968	(77214454)	+	(CGGG)n	Simple_repeat	1	26	(0)	253260
1848	24.3	10.8	1.4	chr1	175022582	175023219	(73933203)	+	L2	LINE/L2	1672	2376	(1043)	258102
1293	17.3	2.5	0.5	chr1	200487655	200487851	(48468571)	+	AluJb	SINE/Alu	87	287	(25)	294354
16	5.2	0.0	0.0	chr1	200487852	200487871	(48468551)	+	(GA)n	Simple_repeat	1	20	(0)	294355
28	0.0	0.0	0.0	chr1	200487873	200487899	(48468523)	+	(G)n	Simple_repeat	1	27	(0)	294356
39	2.7	0.0	0.0	chr1	200487903	200487940	(48468482)	+	(GA)n	Simple_repeat	1	38	(0)	294357
479	27.2	12.9	5.7	chr1	200487956	200488023	(48468399)	C	L2a	LINE/L2	(142)	3284	3217	294352
578	26.0	5.1	6.1	chr1	201155147	201155326	(47801096)	+	MIR3	SINE/MIR	23	200	(8)	295578
211	32.3	0.0	0.0	chr1	206911000	206911061	(42045361)	+	L2a	LINE/L2	3355	3416	(10)	305902
553	12.4	5.8	0.0	chr1	206911323	206911419	(42045003)	C	MER33	DNA/hAT-Charlie	(0)	324	222	305903
13	26.0	0.0	0.0	chr1	206911420	206911460	(42044962)	+	(TATTTT)n	Simple_repeat	1	41	(0)	305904
12	26.9	2.7	6.6	chr1	208245524	208245597	(40710825)	+	GA-rich	Low_complexity	1	76	(0)	307826
437	26.9	0.0	0.0	chr1	208245689	208245792	(40710630)	C	L3	LINE/CR1	(187)	3912	3809	307827
15	20.4	0.0	0.0	chr1	211259202	211259230	(37697192)	+	(C)n	Simple_repeat	1	29	(0)	312388
25	19.3	0.0	0.0	chr1	211259429	211259481	(37696941)	+	(CCT)n	Simple_repeat	1	53	(0)	312389
500	25.9	8.5	2.4	chr1	211469892	211470057	(37486365)	C	MIRb	SINE/MIR	(47)	221	45	312740
1984	15.5	6.3	1.6	chr1	220534168	220534593	(28421829)	C	L1MA4	LINE/L1	(7)	6293	5847	326381
3933	15.2	4.7	3.2	chr1	220534594	220536053	(28420369)	C	L1MB1	LINE/L1	(82)	6086	4599	326380
1309	15.1	2.1	15.7	chr1	226108908	226109078	(22847344)	C	AluJr	SINE/Alu	(183)	129	10	335231
1124	22.8	16.5	4.3	chr1	226109093	226109510	(22846912)	+	L2a	LINE/L2	2948	3426	(0)	335221
40	29.6	0.0	0.0	chr1	228635559	228635667	(20320755)	+	(CA)n	Simple_repeat	1	109	(0)	338951
63	31.5	1.7	0.8	chr1	228635679	228635919	(20320503)	+	GA-rich	Low_complexity	1	245	(0)	338952
283	19.1	13.0	6.0	chr1	229507698	229507797	(19448625)	C	MIRb	SINE/MIR	(84)	184	77	340394
16	9.8	0.0	0.0	chr1	235367084	235367105	(13589317)	+	(T)n	Simple_repeat	1	22	(0)	349596
2937	7.3	0.0	0.0	chr1	236096779	236097148	(12859274)	C	LTR10A	LTR/ERV1	(62)	547	178	350992
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
257	27.5	11.8	7.8	chr1	236794837	236794990	(12161432)	C	MIRc	SINE/MIR	(24)	244	84	352267
2371	10.2	2.6	0.0	chr1	237427509	237427812	(11528610)	+	AluSz	SINE/Alu	1	312	(0)	353291
454	24.6	6.6	6.6	chr1	237427813	237427886	(11528536)	+	L1MC4	LINE/L1	2382	2461	(3754)	353290
5969	9.5	0.7	0.5	chr1	237427924	237428767	(11527655)	+	L1PA10	LINE/L1	5313	6158	(10)	353292
1411	13.1	0.0	0.9	chr1	237455364	237455579	(11500843)	+	L1PA15	LINE/L1	5939	6152	(13)	353338
2626	4.9	0.0	0.0	chr1	244299875	244300180	(4656242)	C	AluY	SINE/Alu	(5)	306	1	363927
2176	7.2	0.7	0.0	chr1	244833995	244834271	(4122151)	C	AluSq4	SINE/Alu	(31)	280	2	364891
15	3.6	6.5	3.0	chr1	244835195	244835233	(4121189)	+	(GGGCTG)n	Simple_repeat	1	40	(0)	364892
8798	3.3	24.6	0.0	chr1	248944224	248945548	(10874)	+	TAR1	Satellite/telo	314	2069	(42)	371028
676	4.0	0.7	3.4	chr1	248945549	248946422	(10000)	+	(AGGGTT)n	Simple_repeat	1	880	(0)	371029
2339	9.9	5.8	3.1	chr10	1066717	1067070	(132730352)	C	THE1B	LTR/ERVL-MaLR	(0)	364	1	372246
4608	20.5	8.0	1.9	chr10	1067071	1067749	(132729673)	+	L1MDa	LINE/L1	5161	5880	(753)	372242
18	13.7	2.4	2.3	chr10	3476198	3476207	(130321215)	+	(GCTGTT)n	Simple_repeat	3	43	(0)	375157
141	39.9	0.1	1.1	chr10	3827868	3828576	(129968846)	+	(TG)n	Simple_repeat	1	710	(0)	375612
715	24.5	3.4	7.0	chr10	4981763	4982034	(128815388)	+	L1PBa	LINE/L1	532	793	(6070)	377179
213	21.1	5.0	1.7	chr10	7086381	7086438	(126710984)	C	L2b	LINE/L2	(6)	3369	3310	380518
27	6.1	0.0	0.0	chr10	7179392	7179425	(126617997)	+	(A)n	Simple_repeat	1	34	(0)	380643
1392	24.7	8.3	0.0	chr10	13556468	13556896	(120240526)	+	L1MC4	LINE/L1	7379	7846	(196)	390986
319	26.7	2.8	12.7	chr10	13556916	13557151	(120240271)	C	HAL1	LINE/L1	(2295)	212	1	390990
35	30.6	0.8	2.4	chr10	26891121	26891246	(106906176)	+	(TG)n	Simple_repeat	1	127	(0)	412513
12	10.0	9.4	0.0	chr10	30056511	30056542	(103740880)	+	(TTTC)n	Simple_repeat	1	35	(0)	417970
651	19.3	0.6	2.5	chr10	55596875	55597038	(78200384)	+	L1M2	LINE/L1	5101	5263	(883)	450388
16	19.1	4.0	1.9	chr10	73246748	73246797	(60550625)	+	(GTTCTCT)n	Simple_repeat	1	52	(0)	478920
15	17.6	0.0	4.8	chr10	73997951	73997992	(59799430)	+	G-rich	Low_complexity	1	42	(0)	480356
311	27.8	9.5	0.0	chr10	92592773	92592905	(41204517)	C	MIR	SINE/MIR	(20)	242	96	509471
14	24.7	0.0	0.0	chr10	95561502	95561540	(38235882)	+	G-rich	Low_complexity	1	39	(0)	514501
516	22.7	8.3	0.7	chr10	95561764	95561918	(38235504)	+	MIR	SINE/MIR	94	261	(1)	514502
2613	3.3	2.9	0.3	chr10	103966137	103966438	(29830984)	+	AluY	SINE/Alu	1	310	(1)	529994
470	19.6	12.8	2.0	chr10	103966531	103966676	(29830746)	C	MIRb	SINE/MIR	(19)	249	86	529995
511	32.2	6.5	10.6	chr10	107792054	107792564	(26004858)	C	MLT1H2	LTR/ERVL-MaLR	(0)	489	1	535736
16	35.7	0.0	0.0	chr10	112950432	112950491	(20846931)	+	(TT)n	Simple_repeat	1	60	(0)	543548
18	14.7	0.0	4.7	chr10	112950556	112950598	(20846824)	+	(CTCCC)n	Simple_repeat	1	43	(0)	543549
17	19.7	2.0	3.9	chr10	118342436	118342486	(15454936)	+	(TTTC)n	Simple_repeat	1	52	(0)	551885
535	19.4	18.5	3.8	chr10	122413289	122413553	(11383869)	C	L1ME4a	LINE/L1	(213)	5911	5611	558834
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
8705	1.0	24.2	0.0	chr10	133785742	133787104	(10318)	+	TAR1	Satellite/telo	314	2111	(0)	572857
113	26.6	0.6	1.2	chr10	133787105	133787422	(10000)	+	G-rich	Low_complexity	1	320	(0)	572858
289	2.3	15.7	0.0	chr11	14520846	14520888	(120565734)	C	MADE1	DNA/TcMar-Mariner	(2)	78	28	594098
225	29.9	14.9	2.0	chr11	14520962	14521060	(120565562)	+	L2a	LINE/L2	3244	3396	(30)	594099
524	23.2	8.5	0.0	chr11	27507067	27507217	(107579405)	+	MIR3	SINE/MIR	36	200	(8)	614072
1348	13.2	0.3	0.6	chr11	50390023	50399923	(84686699)	+	ALR/Alpha	Satellite/centr	1	9880	(0)	650402
1263	15.5	0.6	0.5	chr11	55021433	55043729	(80042893)	C	ALR/Alpha	Satellite/centr	(23)	22323	1	650757
2124	9.5	3.2	1.0	chr11	61391207	61391252	(73695370)	+	AluSq2	SINE/Alu	1	47	(266)	660081
32	0.0	0.0	0.0	chr11	61391253	61391282	(73695340)	+	(G)n	Simple_repeat	1	30	(0)	660082
2124	9.5	3.2	1.0	chr11	61391283	61391540	(73695082)	+	AluSq2	SINE/Alu	48	311	(2)	660081
2070	8.9	0.0	0.0	chr11	62754546	62754825	(72331797)	+	AluSz	SINE/Alu	1	280	(32)	662715
2337	9.2	0.0	0.3	chr11	62841037	62841341	(72245281)	+	AluSc	SINE/Alu	1	304	(5)	662921
1365	9.9	0.0	6.1	chr11	62841342	62841418	(72245204)	+	AluSc8	SINE/Alu	131	199	(112)	662920
1657	2.7	0.0	0.0	chr11	62841624	62841809	(72244813)	C	U2	snRNA	(2)	186	1	662922
20	8.1	2.3	4.5	chr11	63671527	63671569	(71415053)	+	(CGAGG)n	Simple_repeat	1	44	(0)	664137
16	12.6	4.1	5.9	chr11	65818245	65818293	(69268329)	+	G-rich	Low_complexity	1	51	(0)	668224
291	22.6	6.4	6.4	chr11	65818452	65818560	(69268062)	+	MIRc	SINE/MIR	98	206	(62)	668225
2317	9.1	0.3	0.0	chr11	65988547	65988844	(69097778)	+	AluSp	SINE/Alu	1	299	(14)	668598
2234	8.5	1.3	2.3	chr11	65989469	65989773	(69096849)	C	AluSx	SINE/Alu	(10)	302	1	668599
181	26.7	10.3	3.0	chr11	66282791	66282925	(68803697)	+	MIR3	SINE/MIR	30	175	(33)	669177
4508	7.8	0.6	0.0	chr11	68670886	68671513	(66415109)	C	L1P3	LINE/L1	(1276)	4870	4239	673775
378	29.2	2.7	11.0	chr11	74139292	74139491	(60947131)	+	L2c	LINE/L2	3199	3381	(6)	683510
274	28.2	1.5	0.3	chr11	77113284	77113368	(57973254)	+	L2b	LINE/L2	3303	3416	(10)	689278
17	24.9	0.0	0.0	chr11	77113571	77113609	(57973013)	+	GA-rich	Low_complexity	1	39	(0)	689279
819	22.1	3.1	0.0	chr11	77113784	77113973	(57972649)	C	L1MB4	LINE/L1	(2)	6178	5983	689280
2456	8.0	0.0	0.3	chr11	90117822	90118122	(44968500)	C	AluY	SINE/Alu	(11)	300	1	711006
273	22.5	11.9	12.6	chr11	90118123	90118163	(44968459)	+	MER5B	DNA/hAT-Charlie	124	156	(22)	711005
13	22.5	0.0	4.4	chr11	93543471	93543515	(41543107)	+	(GCCCCC)n	Simple_repeat	1	45	(0)	715720
191	33.1	1.3	8.6	chr11	93543565	93543821	(41542801)	+	L2a	LINE/L2	3128	3413	(13)	715721
467	29.6	7.4	0.6	chr11	93544042	93544218	(41542404)	+	MIRb	SINE/MIR	34	223	(45)	715722
26226	2.5	0.4	0.0	chr11	94232525	94238528	(40848094)	C	L1PA2	LINE/L1	(3)	6152	124	716864
15	6.9	2.9	5.7	chr11	110373869	110373902	(24712720)	+	GA-rich	Low_complexity	1	35	(0)	739752
1988	11.1	0.4	0.0	chr11	110373952	110374240	(24712382)	C	AluSz	SINE/Alu	(0)	312	24	739753
276	28.0	3.1	3.9	chr11	113315464	113315593	(21771029)	+	MER5A	DNA/hAT-Charlie	37	165	(24)	744367
28	26.6	2.8	2.7	chr12	1690996	1691104	(131584205)	+	(CGG)n	Simple_repeat	1	112	(0)	781100
541	3.2	0.0	0.0	chr12	6943817	6943878	(126331431)	+	U7	snRNA	2	63	(0)	789678
2252	10.6	0.0	2.9	chr12	12319281	12319592	(120955717)	C	AluSx3	SINE/Alu	(8)	303	1	797935
1208	19.0	4.2	4.9	chr12	12319593	12319784	(120955525)	+	MER89	LTR/ERV1	344	535	(24)	797934
2149	12.1	0.7	0.0	chr12	17097227	17097508	(116177801)	C	AluSx	SINE/Alu	(24)	288	5	805103
241	31.9	0.8	0.8	chr12	17097512	17097631	(116177678)	C	MLT1J-int	LTR/ERVL-MaLR	(653)	734	615	805100
237	37.0	2.8	1.4	chr12	17097913	17098052	(116177257)	C	MLT1J-int	LTR/ERVL-MaLR	(876)	511	370	805100
2219	17.7	14.6	3.9	chr12	19438162	19438884	(113836425)	+	Charlie2b	DNA/hAT-Charlie	1784	2597	(185)	808196
233	26.4	4.2	2.1	chr12	19438915	19439007	(113836302)	+	Charlie2a	DNA/hAT-Charlie	2763	2857	(4)	808197
31	16.6	1.4	1.4	chr12	19439369	19439437	(113835872)	+	G-rich	Low_complexity	1	70	(0)	808198
1017	30.5	8.4	2.8	chr12	22443340	22443842	(110831467)	+	MamGypLTR3	LTR/Gypsy	348	881	(13)	812123
327	26.7	17.2	9.9	chr12	31659808	31659866	(101615443)	+	MER102a	DNA/hAT-Charlie	45	102	(228)	825746
2332	6.2	1.6	5.6	chr12	31659867	31660188	(101615121)	+	AluSz	SINE/Alu	1	309	(3)	825747
328	29.6	0.0	5.3	chr12	31729530	31729661	(101545648)	C	MIRb	SINE/MIR	(16)	252	128	825912
213	32.9	0.0	0.0	chr12	31729924	31730002	(101545307)	C	L2b	LINE/L2	(3)	3372	3294	825913
1065	15.4	0.0	0.0	chr12	34608124	34608358	(98666951)	+	ALR/Alpha	Satellite/centr	1	235	(0)	830152
38	0.0	4.8	0.0	chr12	34608359	34608400	(98666909)	+	(TTTTA)n	Simple_repeat	1	44	(0)	830153
1214	13.2	0.7	0.3	chr12	34614659	34619618	(98655691)	+	ALR/Alpha	Satellite/centr	1	4976	(0)	830155
5048	5.0	0.0	0.0	chr12	37778594	37779231	(95496078)	+	L1PA3	LINE/L1	4142	4779	(1367)	830545
1042	17.9	0.8	0.5	chr12	37779232	37784946	(95490363)	+	ALR/Alpha	Satellite/centr	1	5731	(0)	830546
334	18.3	4.1	0.0	chr12	44948505	44948575	(88326734)	+	UCON101	Unknown	34	107	(13)	840110
2290	10.2	0.0	1.9	chr12	44949039	44949351	(88325958)	+	AluSc	SINE/Alu	1	307	(2)	840111
2323	10.3	0.6	0.6	chr12	49137957	49138268	(84137041)	+	AluSz6	SINE/Alu	1	312	(0)	846465
282	29.6	10.2	3.4	chr12	49138281	49138399	(84136910)	+	MIRb	SINE/MIR	27	154	(114)	846466
401	25.2	13.7	12.7	chr12	49138600	49138954	(84136355)	+	MLT1L	LTR/ERVL-MaLR	1	359	(251)	846467
2113	9.5	4.1	0.0	chr12	56316550	56316832	(76958477)	C	AluSg7	SINE/Alu	(14)	295	1	859298
53	0.0	0.0	0.0	chr12	56763438	56763482	(76511827)	+	(TG)n	Simple_repeat	1	45	(0)	860211
1469	25.1	1.0	1.2	chr12	66066225	66066631	(67208678)	+	AmnSINE1	SINE/5S-Deu-L2	5	410	(165)	873753
264	31.0	5.0	4.2	chr12	66066835	66067073	(67208236)	+	CR1-3_Croc	LINE/CR1	2478	2718	(887)	873754
65	0.0	0.0	0.0	chr12	66067077	66067134	(67208175)	+	(AAGG)n	Simple_repeat	1	58	(0)	873755
242	20.9	0.0	6.9	chr12	75511955	75512026	(57763283)	C	L2c	LINE/L2	(0)	3387	3321	887648
1424	27.1	14.6	2.1	chr12	81680997	81681163	(51594146)	+	LTR75B	LTR/ERVL	420	607	(1)	896725
336	24.2	12.1	1.1	chr12	85079694	85079877	(48195432)	C	L1MEg	LINE/L1	(4091)	2151	1945	901161
457	22.6	11.9	0.0	chr12	85079926	85080058	(48195251)	C	L1MEg	LINE/L1	(4524)	1718	1568	901161
283	30.6	1.2	0.0	chr12	85080255	85080339	(48194970)	C	L1MEg	LINE/L1	(4917)	1325	1240	901161
15	29.4	1.6	1.5	chr12	85280565	85280628	(47994681)	+	(GGAAGGT)n	Simple_repeat	1	65	(0)	901405
19	11.4	2.6	0.0	chr12	85280930	85280967	(47994342)	+	(AAACAAA)n	Simple_repeat	1	39	(0)	901406
700	25.6	3.8	1.0	chr12	106154838	106155067	(27120242)	C	MIR	SINE/MIR	(0)	262	35	935725
945	24.9	6.3	5.7	chr12	106155257	106155571	(27119738)	+	MLT1J	LTR/ERVL-MaLR	31	347	(165)	935726
277	30.8	0.0	1.1	chr12	109387246	109387337	(23887972)	C	L1ME2	LINE/L1	(1208)	4938	4848	942421
293	19.4	0.0	0.0	chr12	109387366	109387427	(23887882)	C	L1ME2	LINE/L1	(1433)	4713	4652	942421
1973	23.9	4.5	9.9	chr12	109387428	109388086	(23887223)	+	LTR41B	LTR/ERVL	1	622	(136)	942424
916	31.4	8.5	11.7	chr12	111304479	111305246	(21970063)	C	MamGypLTR3a	LTR/Gypsy	(2)	979	239	946756
2005	12.2	3.3	0.3	chr12	112409729	112410024	(20865285)	+	AluSx	SINE/Alu	1	305	(7)	949133
2004	17.2	13.5	1.8	chr12	118120423	118120936	(15154373)	C	LTR29	LTR/ERV1	(38)	584	1	961899
290	27.2	11.0	2.2	chr12	118121136	118121293	(15154016)	C	MIR3	SINE/MIR	(32)	176	9	961900
2223	9.1	1.3	0.3	chr12	120291111	120291406	(12983903)	+	AluSq	SINE/Alu	8	306	(7)	966630
1323	1.4	0.0	0.0	chr12	120291760	120291903	(12983406)	C	U4	snRNA	(1)	144	1	966631
1269	27.7	9.9	2.5	chr12	123571335	123571727	(9703582)	+	MLT1J2	LTR/ERVL-MaLR	10	434	(14)	974436
436	27.0	12.8	5.4	chr12	123571729	123571896	(9703413)	C	MLT1J1	LTR/ERVL-MaLR	(1)	410	211	974437
2433	8.2	0.3	0.0	chr12	124926845	124927147	(8348162)	+	AluSg	SINE/Alu	1	304	(6)	977164
659	0.0	0.0	0.0	chr12	124927345	124927416	(8347893)	C	tRNA-Asp-GAY	tRNA	(3)	72	1	977165
462	22.6	9.4	0.0	chr12	124992512	124992675	(8282634)	+	L1M5	LINE/L1	5292	5472	(651)	977330
1847	26.9	9.9	1.3	chr12	124992683	124993439	(8281870)	C	L1MC5a	LINE/L1	(325)	2452	1624	977331
2582	16.2	6.8	1.1	chr12	131670667	131671209	(1604100)	+	L1MB2	LINE/L1	4510	5085	(1291)	988425
2248	19.8	7.7	1.9	chr12	131671209	131671771	(1603538)	+	L1MB2	LINE/L1	5810	6407	(0)	988425
2224	5.7	7.3	0.0	chr12	131864788	131865068	(1410241)	+	AluY	SINE/Alu	1	303	(8)	988719
476	32.5	7.4	0.4	chr12	131865315	131865567	(1409742)	+	L1ME3	LINE/L1	5889	6160	(2)	988720
12	15.6	3.5	0.0	chr12	133130499	133130527	(144782)	+	(GTGT)n	Simple_repeat	1	30	(0)	990566
12	26.2	0.0	2.3	chr13	25372552	25372594	(88991734)	+	(GTGCGC)n	Simple_repeat	1	43	(0)	1001745
33	25.6	0.0	0.0	chr13	25372859	25372932	(88991396)	+	(AC)n	Simple_repeat	1	74	(0)	1001746
108	0.0	1.0	0.0	chr13	26982957	26983054	(87381274)	+	(AAAG)n	Simple_repeat	1	99	(0)	1004109
9919	16.5	2.4	1.2	chr13	28756988	28759403	(85604925)	C	L1MB2	LINE/L1	(17)	6154	3692	1007296
520	33.0	9.3	1.7	chr13	43384394	43384630	(70979698)	C	MIRb	SINE/MIR	(1)	267	11	1028796
291	30.1	10.4	8.1	chr13	43384638	43384872	(70979456)	+	MamRTE1	LINE/RTE-BovB	3562	3802	(10)	1028795
337	34.4	9.3	6.7	chr13	50877942	50878150	(63486178)	C	L1MCc	LINE/L1	(5956)	467	253	1040771
1042	29.3	4.7	7.4	chr13	57544719	57545219	(56819109)	+	LTR16A2	LTR/ERVL	9	495	(0)	1049704
9346	16.1	3.5	0.8	chr13	63009431	63011011	(51353317)	C	MSTA-int	LTR/ERVL-MaLR	(6)	1625	1	1056706
1284	30.0	2.5	5.1	chr13	63481242	63481694	(50882634)	C	LTR16A1	LTR/ERVL	(12)	444	4	1057340
331	27.0	0.0	0.1	chr13	63481816	63481935	(50882393)	C	L1ME3G	LINE/L1	(486)	406	304	1057341
407	30.5	11.3	3.5	chr13	63481940	63482396	(50881932)	C	L1M4	LINE/L1	(607)	5517	5025	1057342
1943	22.1	8.0	2.7	chr13	64333866	64334562	(50029766)	+	LTR27D	LTR/ERV1	139	1073	(4)	1058409
5719	16.3	4.9	4.8	chr13	64494873	64495710	(49868618)	+	Tigger3b	DNA/TcMar-Tigger	1	856	(375)	1058600
3029	13.5	1.8	0.4	chr13	64495711	64496200	(49868128)	+	LOR1a	LTR/ERV1	1	497	(0)	1058601
532	27.5	3.3	5.8	chr13	64695310	64695498	(49668830)	C	Tigger15a	DNA/TcMar-Tigger	(461)	254	71	1058874
240	23.6	3.5	8.3	chr13	64695499	64695618	(49668710)	C	CR1_Mam	LINE/CR1	(33)	2171	2058	1058875
1221	25.7	10.4	3.2	chr13	67859390	67859718	(46504610)	+	L1MEg	LINE/L1	966	1301	(4783)	1062805
29	0.0	0.0	0.0	chr13	67859719	67859743	(46504585)	+	(AC)n	Simple_repeat	1	25	(0)	1062807
1221	25.7	10.4	3.2	chr13	67859744	67859825	(46504503)	+	L1MEg	LINE/L1	1302	1426	(4658)	1062805
409	25.0	14.6	4.3	chr13	67859846	67860029	(46504299)	+	L2a	LINE/L2	2299	2504	(915)	1062808
444	27.4	7.9	1.8	chr13	67860141	67860307	(46504021)	+	L2a	LINE/L2	2783	2960	(459)	1062808
1948	23.7	7.0	6.1	chr13	68992115	68993329	(45370999)	C	L1MC3	LINE/L1	(1838)	6122	4920	1064223
348	29.2	5.3	7.8	chr13	68993361	68993553	(45370775)	C	L1MC3	LINE/L1	(6319)	189	2	1064223
5561	16.4	0.6	1.3	chr13	70095545	70096543	(44267785)	C	L1MA4	LINE/L1	(6)	6294	5303	1065681
633	31.6	4.9	5.3	chr13	70203162	70203757	(44160571)	+	L1ME3D	LINE/L1	5468	6080	(162)	1065828
1042	25.5	12.0	0.9	chr13	70203758	70204074	(44160254)	+	LTR18A	LTR/ERVL	1	357	(0)	1065829
293	28.8	2.1	8.9	chr13	70204075	70204191	(44160137)	+	L1ME3D	LINE/L1	6073	6123	(0)	1065828
1237	31.6	4.9	3.2	chr13	70729226	70729722	(43634606)	+	MLT1G1	LTR/ERVL-MaLR	73	578	(1)	1066521
18	9.2	2.7	2.6	chr13	71713073	71713112	(42651216)	+	(TTCTT)n	Simple_repeat	1	40	(0)	1067816
911	22.8	13.0	3.8	chr13	75538434	75538830	(38825498)	C	L1MC4	LINE/L1	(0)	8042	7604	1073517
11267	11.3	0.9	0.2	chr13	76086294	76087912	(38276416)	C	THE1D-int	LTR/ERVL-MaLR	(0)	1631	1	1074283
15109	11.6	1.4	1.4	chr13	77367447	77370743	(36993585)	+	L1PA16	LINE/L1	2857	6155	(11)	1076111
277	25.0	6.2	0.0	chr13	79406598	79406673	(34957655)	+	Charlie17	DNA/hAT-Charlie	2834	2914	(2)	1078871
6311	13.4	7.8	0.6	chr13	79528293	79528914	(34835414)	+	Tigger3b	DNA/TcMar-Tigger	595	1230	(1)	1079095
531	31.9	9.8	0.6	chr13	79529006	79529236	(34835092)	C	MIRc	SINE/MIR	(3)	265	6	1079097
19	4.5	0.0	0.0	chr13	80360240	80360262	(34004066)	+	(A)n	Simple_repeat	1	23	(0)	1080239
3502	16.3	4.6	2.9	chr13	82393954	82394888	(31969440)	+	LTR27D	LTR/ERV1	1	758	(21)	1082708
611	19.1	0.0	0.0	chr13	82394895	82395009	(31969319)	+	L1M2	LINE/L1	5023	5137	(1006)	1082705
331	33.4	7.4	6.7	chr13	82395097	82395387	(31968941)	+	L2a	LINE/L2	3114	3426	(0)	1082709
13	5.2	0.0	0.0	chr13	84866214	84866233	(29498095)	+	(AAC)n	Simple_repeat	1	20	(0)	1085790
47	0.0	0.0	0.0	chr13	84866234	84866273	(29498055)	+	(AC)n	Simple_repeat	1	40	(0)	1085791
5542	11.7	16.8	5.3	chr13	85362955	85364056	(29000272)	+	LTR12D	LTR/ERV1	1	1254	(0)	1086446
205	35.1	2.6	5.0	chr13	85364084	85364203	(29000125)	C	L3	LINE/CR1	(29)	4070	3954	1086447
321	24.6	10.2	3.4	chr13	85364223	85364340	(28999988)	+	L2	LINE/L2	2347	2473	(946)	1086448
278	36.4	0.7	0.7	chr13	86201670	86201824	(28162504)	+	L1M5	LINE/L1	5728	5882	(312)	1087474
683	32.5	8.7	2.3	chr13	87124037	87124421	(27239907)	C	MamRTE1	LINE/RTE-BovB	(100)	3712	3301	1088601
1765	17.3	5.4	12.6	chr13	87887375	87887781	(26476547)	C	MSTC	LTR/ERVL-MaLR	(0)	428	41	1089616
1826	20.3	0.0	0.3	chr13	87887782	87888092	(26476236)	C	AluJb	SINE/Alu	(2)	310	1	1089617
5432	16.0	3.2	1.0	chr13	90249931	90251630	(24112698)	C	L1MA4	LINE/L1	(192)	7527	5788	1092693
2797	24.6	8.2	2.1	chr13	92103673	92104445	(22259883)	C	L1M4	LINE/L1	(6665)	852	28	1095162
594	20.4	10.2	0.0	chr13	94548873	94549004	(19815324)	C	MER5A	DNA/hAT-Charlie	(42)	147	1	1098497
661	1.4	0.0	0.0	chr13	94549650	94549722	(19814606)	C	tRNA-Phe-TTY	tRNA	(3)	73	1	1098498
851	28.0	17.0	3.0	chr13	94594896	94595618	(19768710)	C	L2a	LINE/L2	(0)	3426	2569	1098573
137	38.6	0.0	0.0	chr13	104524667	104525122	(9839206)	+	(AC)n	Simple_repeat	1	456	(0)	1113557
17	30.5	0.0	1.7	chr13	104525089	104525127	(9839201)	+	(AT)n	Simple_repeat	1	38	(0)	1113558
30	0.0	0.0	0.0	chr13	104525128	104525153	(9839175)	+	(CA)n	Simple_repeat	1	26	(0)	1113559
17	30.5	0.0	1.7	chr13	104525154	104525173	(9839155)	+	(AT)n	Simple_repeat	1	20	(0)	1113560
22	19.0	0.0	0.0	chr14	20469448	20469495	(86574223)	+	(AGCGG)n	Simple_repeat	1	48	(0)	1128100
1854	24.3	4.2	4.8	chr14	28677205	28677702	(78366016)	C	MLT1E3	LTR/ERVL-MaLR	(0)	624	130	1139544
13	8.5	0.0	3.7	chr14	35826847	35826873	(71216845)	+	(CGGGG)n	Simple_repeat	1	27	(0)	1150696
15	22.0	2.0	2.0	chr14	52695751	52695799	(54347919)	+	(CCCCG)n	Simple_repeat	1	50	(0)	1173340
20	17.5	0.0	2.1	chr14	52695949	52695995	(54347723)	+	(CCCGC)n	Simple_repeat	1	47	(0)	1173341
212	21.4	0.0	0.0	chr14	52696063	52696104	(54347614)	C	MIR3	SINE/MIR	(16)	192	151	1173342
689	16.2	16.7	1.6	chr14	52696111	52696354	(54347364)	C	MER33	DNA/hAT-Charlie	(33)	291	4	1173343
1920	8.1	0.4	2.2	chr14	61269361	61269627	(45774091)	C	L1PA13	LINE/L1	(9)	6154	5893	1186265
5711	8.9	0.8	4.3	chr14	69165733	69166322	(37877396)	+	L1MA2	LINE/L1	7005	7559	(164)	1198970
1328	15.7	1.6	1.2	chr14	69166325	69166576	(37877142)	C	LTR37A	LTR/ERV1	(149)	277	25	1198974
1159	27.7	17.3	1.9	chr14	70971494	70972409	(36071309)	C	L2a	LINE/L2	(7)	3419	2320	1202065
794	19.2	9.7	0.0	chr14	73456767	73456933	(33586785)	+	MER5A	DNA/hAT-Charlie	2	186	(3)	1206316
413	23.6	4.5	8.0	chr14	73456997	73457134	(33586584)	C	MIR	SINE/MIR	(28)	234	102	1206317
16	0.0	0.0	0.0	chr14	77033326	77033342	(30010376)	+	(A)n	Simple_repeat	1	17	(0)	1213476
135	1.6	0.8	0.0	chr14	77269669	77269795	(29773923)	+	(TC)n	Simple_repeat	1	128	(0)	1213918
25	0.0	0.0	0.0	chr14	77269796	77269822	(29773896)	+	(C)n	Simple_repeat	1	27	(0)	1213919
529	28.8	2.5	2.5	chr14	77269823	77269979	(29773739)	C	MIR	SINE/MIR	(43)	219	63	1213920
183	27.5	0.0	0.0	chr14	77470442	77470481	(29573237)	C	L2c	LINE/L2	(20)	3367	3328	1214259
283	33.3	9.4	1.5	chr14	93028527	93028663	(14015055)	+	MIRb	SINE/MIR	94	242	(26)	1238667
209	26.0	1.4	6.4	chr14	93028944	93029021	(14014697)	+	L2c	LINE/L2	3274	3347	(40)	1238668
209	36.5	8.0	0.0	chr14	93029131	93029245	(14014473)	C	MIRb	SINE/MIR	(80)	188	64	1238669
99	32.9	2.3	1.4	chr14	94218333	94218761	(12824957)	+	(CA)n	Simple_repeat	1	439	(0)	1240817
847	24.4	11.8	7.0	chr14	94218765	94219057	(12824661)	+	L1MCc	LINE/L1	2085	2398	(4639)	1240815
709	24.4	2.7	1.1	chr14	100663242	100663423	(6380295)	C	MIR	SINE/MIR	(4)	258	74	1252228
876	24.9	14.5	0.7	chr14	100663498	100663776	(6379942)	C	MER33	DNA/hAT-Charlie	(0)	324	1	1252229
2070	20.6	8.6	4.2	chr14	103362173	103362627	(3681091)	C	L1M4c	LINE/L1	(4279)	2367	1883	1256647
1534	20.1	0.3	2.5	chr14	103362628	103362941	(3680777)	C	AluJr	SINE/Alu	(4)	308	2	1256648
2070	20.6	8.1	5.7	chr14	103362942	103363116	(3680602)	C	L1M4c	LINE/L1	(5615)	1902	1720	1256647
856	17.1	0.0	0.0	chr14	103363117	103363239	(3680479)	+	AluJo	SINE/Alu	1	123	(189)	1256649
1172	16.9	0.5	0.3	chr15	17019738	17035566	(84955623)	+	ALR/Alpha	Satellite/centr	1	15847	(8)	1262351
322	26.1	21.0	4.2	chr15	42208490	42208705	(59782484)	+	MIRb	SINE/MIR	7	268	(0)	1294730
815	18.1	5.3	4.3	chr15	42208766	42208950	(59782239)	+	MER5A	DNA/hAT-Charlie	1	187	(2)	1294731
515	22.0	11.8	7.0	chr15	55319411	55319610	(46671579)	C	MER102b	DNA/hAT-Charlie	(59)	282	72	1315309
572	30.0	9.5	0.5	chr15	56364804	56365024	(45626165)	C	MIR	SINE/MIR	(15)	247	5	1317028
2022	13.1	0.0	0.0	chr15	65292394	65292691	(36698498)	C	AluSz6	SINE/Alu	(14)	298	1	1332311
1923	22.5	12.6	3.1	chr15	65292740	65293440	(36697749)	+	L1ME2z	LINE/L1	5335	6111	(333)	1332312
859	6.9	0.0	0.8	chr15	65304677	65304793	(36686396)	+	U5	snRNA	1	116	(0)	1332345
706	12.5	0.0	1.8	chr15	65305005	65305116	(36686073)	+	AluSz	SINE/Alu	1	110	(202)	1332346
509	19.5	7.4	0.0	chr15	65305120	65305232	(36685957)	C	MER33	DNA/hAT-Charlie	(184)	140	19	1332347
237	28.8	9.8	7.7	chr15	65305347	65305533	(36685656)	C	L1M5	LINE/L1	(561)	5681	5486	1332348
116	5.2	4.2	3.0	chr15	66566718	66566910	(35424279)	+	(TTTC)n	Simple_repeat	1	201	(0)	1334957
818	17.8	7.3	0.0	chr15	66566915	66567066	(35424123)	C	AluJb	SINE/Alu	(66)	246	83	1334958
223	29.3	5.7	7.9	chr15	66567121	66567246	(35423943)	+	L2c	LINE/L2	3257	3379	(8)	1334956
21	18.4	0.0	0.0	chr15	66701954	66701991	(35289198)	+	(TG)n	Simple_repeat	1	38	(0)	1335297
19	21.5	1.5	4.5	chr15	74956809	74956873	(27034316)	+	(GCCCC)n	Simple_repeat	1	66	(0)	1349865
14	10.3	3.0	2.9	chr15	74956911	74956943	(27034246)	+	G-rich	Low_complexity	1	34	(0)	1349866
428	28.8	3.0	1.8	chr15	74956962	74957124	(27034065)	C	MamRep1879	DNA/hAT-Tip100?	(36)	180	16	1349867
2203	13.1	0.0	1.0	chr15	75204465	75204809	(26786380)	C	AluSz	SINE/Alu	(0)	312	1	1350398
209	25.0	3.7	0.0	chr15	75205082	75205133	(26786056)	+	MIRc	SINE/MIR	26	79	(189)	1350399
237	27.0	7.4	6.7	chr15	75904750	75904826	(26086363)	C	L1M5	LINE/L1	(289)	5835	5750	1351720
2758	2.4	0.0	0.0	chr15	75904827	75905121	(26086068)	C	AluY	SINE/Alu	(15)	296	2	1351721
222	32.1	10.4	0.9	chr15	85296960	85297072	(16694117)	C	L2c	LINE/L2	(12)	3375	3251	1367554
40	5.5	3.5	0.0	chr16	10001	10057	(90328288)	+	(TAACCC)n	Simple_repeat	1	59	(0)	1394055
3841	13.7	2.4	0.7	chr16	10059	11142	(90327203)	C	TAR1	Satellite/telo	(43)	1103	1	1394056
207	27.4	14.8	0.9	chr16	1959161	1959271	(88379074)	+	L2a	LINE/L2	3226	3405	(21)	1396715
242	27.9	17.2	0.9	chr16	1959282	1959393	(88378952)	+	L2a	LINE/L2	3267	3400	(26)	1396716
1921	11.8	3.8	0.7	chr16	3815272	3815550	(86522795)	+	AluSz	SINE/Alu	15	302	(10)	1399850
1507	10.4	4.6	0.4	chr16	3815659	3815910	(86522435)	C	L1MA2	LINE/L1	(0)	6304	6042	1399851
322	26.3	2.6	3.4	chr16	23453366	23453391	(66884954)	C	SVA_A	Retroposon/SVA	(1035)	352	236	1442306
694	10.9	0.0	0.0	chr16	23453392	23453483	(66884862)	+	AluJr	SINE/Alu	8	99	(213)	1442307
270	20.8	0.0	0.0	chr16	23453505	23453552	(66884793)	C	AluJo	SINE/Alu	(59)	253	206	1442308
814	13.6	0.0	0.0	chr16	23453553	23453670	(66884675)	C	AluJr	SINE/Alu	(65)	247	130	1442309
2275	10.1	0.7	0.3	chr16	28553269	28553575	(61784770)	C	AluSq2	SINE/Alu	(5)	308	1	1453834
513	12.9	4.1	3.1	chr16	28553590	28553685	(61784660)	C	L1MC1	LINE/L1	(0)	6333	6237	1453835
17	0.0	0.0	0.0	chr16	28553720	28553741	(61784604)	+	(TTTA)n	Simple_repeat	1	22	(0)	1453836
20	23.8	1.4	4.0	chr16	28554226	28554299	(61784046)	+	G-rich	Low_complexity	1	75	(0)	1453837
13	22.6	0.0	0.0	chr16	30896871	30896906	(59441439)	+	G-rich	Low_complexity	1	36	(0)	1459128
187	8.0	0.0	0.0	chr16	30897313	30897337	(59441008)	+	MIR1_Amn	SINE/MIR	126	150	(80)	1459129
2357	5.0	5.4	2.5	chr16	33335927	33340033	(56998312)	+	(TGGCTTGGC)n	Simple_repeat	1	4327	(0)	1462585
888	6.7	4.2	0.7	chr16	33340034	33340155	(56998190)	C	LTR13A	LTR/ERVK	(840)	126	1	1462584
330	24.4	1.2	2.4	chr16	34071698	34071779	(56266566)	+	AluJb	SINE/Alu	208	288	(24)	1463578
276	18.3	11.2	2.7	chr16	48366161	48366233	(41972112)	C	MADE2	DNA/TcMar-Mariner	(0)	80	1	1468610
1549	18.2	2.6	0.0	chr16	48366908	48367170	(41971175)	C	AluJb	SINE/Alu	(13)	299	30	1468611
2040	16.0	0.3	3.0	chr16	73124143	73124478	(17213867)	C	MLT1A0	LTR/ERVL-MaLR	(0)	365	39	1512472
1127	24.8	13.0	2.9	chr16	73124650	73125068	(17213277)	C	LTR33	LTR/ERVL	(47)	468	1	1512473
206	31.6	9.5	4.2	chr16	74483238	74483356	(15854989)	C	OldhAT1	DNA/hAT-Ac	(431)	2417	2292	1514777
905	19.8	15.4	5.7	chr16	74483363	74483649	(15854696)	C	L1MC5a	LINE/L1	(4)	2773	2447	1514778
850	14.4	0.0	0.0	chr16	84754859	84754976	(5583369)	+	AluSx	SINE/Alu	1	118	(194)	1533515
14	21.8	0.0	0.0	chr16	87855005	87855041	(2483304)	+	(GGCCAG)n	Simple_repeat	1	37	(0)	1539175
2076	9.3	2.8	0.0	chr17	4909369	4909648	(78347793)	C	AluSx	SINE/Alu	(11)	301	14	1554030
19	17.3	2.1	2.0	chr17	6444058	6444105	(76813336)	+	G-rich	Low_complexity	1	49	(0)	1557110
3173	13.8	3.3	2.5	chr17	14834326	14834951	(68422490)	+	LTR12D	LTR/ERV1	559	1238	(84)	1572121
1948	20.4	3.3	8.3	chr17	14835056	14835383	(68422058)	C	LTR32	LTR/ERVL	(0)	457	130	1572122
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
427	30.9	11.2	1.1	chr17	28952781	28952963	(54304478)	C	MIR3	SINE/MIR	(4)	204	6	1589657
18	23.6	0.0	0.0	chr17	35587383	35587428	(47670013)	+	(CCCGCC)n	Simple_repeat	1	46	(0)	1602448
403	27.9	14.9	0.7	chr17	35808685	35808855	(47448586)	+	MIRb	SINE/MIR	45	230	(0)	1602853
2495	4.3	3.5	0.7	chr17	39451545	39451847	(43805594)	C	AluSq2	SINE/Alu	(1)	312	1	1610119
12	12.0	3.3	3.2	chr17	41688405	41688434	(41569007)	+	(GTAG)n	Simple_repeat	1	31	(0)	1614054
573	8.8	0.0	0.0	chr17	41695758	41695837	(41561604)	+	AluYj4	SINE/Alu	232	311	(0)	1614067
337	10.8	0.0	9.2	chr17	41696231	41696295	(41561146)	C	AluSz6	SINE/Alu	(13)	299	241	1614068
252	30.5	11.2	0.6	chr17	41696344	41696511	(41560930)	+	L2	LINE/L2	2198	2385	(1034)	1614069
26	0.0	0.0	0.0	chr17	41696533	41696557	(41560884)	+	(TTCA)n	Simple_repeat	1	25	(0)	1614070
308	27.1	8.3	2.4	chr17	41696561	41696685	(41560756)	C	L2b	LINE/L2	(22)	3353	3221	1614071
423	30.2	4.8	1.6	chr17	41930142	41930323	(41327118)	C	MIRc	SINE/MIR	(58)	210	20	1614595
21	8.3	7.9	0.0	chr17	43367817	43367854	(39889587)	+	(AC)n	Simple_repeat	1	41	(0)	1617634
680	25.3	1.7	0.6	chr17	43367908	43368082	(39889359)	C	U2	snRNA	(6)	182	6	1617635
2175	10.4	0.3	0.0	chr17	43368407	43368693	(39888748)	C	AluSx3	SINE/Alu	(23)	288	1	1617636
20	14.2	0.0	0.0	chr17	43484225	43484233	(39773208)	+	(GAGGAAG)n	Simple_repeat	1	36	(0)	1617945
12	3.9	11.1	0.0	chr17	43484234	43484260	(39773181)	+	(GGAA)n	Simple_repeat	1	30	(0)	1617946
12	12.0	3.7	0.0	chr17	43484418	43484444	(39772997)	+	(TGTT)n	Simple_repeat	1	28	(0)	1617947
2221	7.4	0.0	0.0	chr17	44239616	44239885	(39017556)	+	AluSx4	SINE/Alu	2	271	(39)	1619510
499	18.7	16.2	7.8	chr17	44239886	44240065	(39017376)	+	MSTC	LTR/ERVL-MaLR	89	286	(142)	1619511
19	0.0	3.7	3.6	chr17	48570944	48570970	(34686471)	+	(AG)n	Simple_repeat	1	28	(0)	1628107
27	0.0	0.0	0.0	chr17	48636528	48636553	(34620888)	+	(T)n	Simple_repeat	1	26	(0)	1628167
426	31.6	3.6	5.9	chr17	48636898	48637099	(34620342)	C	MIRc	SINE/MIR	(50)	218	22	1628168
667	28.9	6.1	11.7	chr17	49099774	49099984	(34157457)	+	MLT1J	LTR/ERVL-MaLR	1	209	(303)	1629219
1596	16.3	4.6	3.0	chr17	57597349	57597649	(25659792)	+	AluJr	SINE/Alu	1	306	(6)	1643515
1095	22.1	9.4	4.4	chr17	57597650	57597736	(25659705)	C	MER58B	DNA/hAT-Charlie	(266)	75	1	1643514
1578	18.6	4.9	0.4	chr17	58631185	58631459	(24625982)	+	AluSz6	SINE/Alu	6	293	(19)	1645372
725	21.4	11.5	2.0	chr17	58631641	58631836	(24625605)	C	U3	snRNA	(0)	217	1	1645373
2291	9.7	0.0	0.0	chr17	58678873	58679171	(24578270)	+	AluSq2	SINE/Alu	2	300	(13)	1645510
300	23.6	12.9	12.1	chr17	58679172	58679272	(24578169)	+	MLT1D	LTR/ERVL-MaLR	199	292	(213)	1645507
886	18.4	0.6	1.2	chr17	58679526	58679690	(24577751)	C	U1	snRNA	(1)	164	1	1645511
14	25.8	0.0	0.0	chr17	59220524	59220561	(24036880)	+	(GCC)n	Simple_repeat	1	38	(0)	1646719
12	36.7	0.0	0.0	chr17	61235701	61235749	(22021692)	+	A-rich	Low_complexity	1	49	(0)	1650720
2478	6.8	0.0	0.0	chr17	63612548	63612840	(19644601)	+	AluSq2	SINE/Alu	1	293	(20)	1655024
14	7.0	0.0	10.5	chr17	63826976	63827013	(19430428)	+	(TTCCAC)n	Simple_repeat	1	38	(0)	1655423
313	29.1	8.5	4.3	chr17	65062558	65062756	(18194685)	C	MIRc	SINE/MIR	(3)	265	37	1657866
1493	14.4	11.7	1.9	chr17	65062757	65063026	(18194415)	C	AluJo	SINE/Alu	(12)	300	1	1657867
236	34.0	10.2	0.7	chr17	68262810	68262960	(14994481)	C	L2a	LINE/L2	(944)	2475	2309	1663845
2345	6.8	0.0	6.8	chr17	73190967	73191292	(10066149)	C	AluSx	SINE/Alu	(8)	304	1	1671828
1818	10.5	0.0	7.6	chr17	73191293	73191407	(10066034)	C	AluJb	SINE/Alu	(179)	133	23	1671827
345	34.5	7.0	3.4	chr17	73191681	73191887	(10065554)	+	MIRc	SINE/MIR	20	234	(34)	1671829
306	27.4	1.9	11.7	chr17	73191908	73192027	(10065414)	+	MIRb	SINE/MIR	110	217	(51)	1671830
2218	11.3	0.0	0.3	chr17	75204850	75205149	(8052292)	C	AluSx1	SINE/Alu	(13)	299	1	1675625
781	24.1	16.8	4.3	chr17	75861225	75861539	(7395902)	C	LTR50	LTR/ERVL	(323)	472	91	1676899
2120	13.2	0.0	2.2	chr17	75861540	75861856	(7395585)	+	AluSx	SINE/Alu	3	312	(0)	1676900
433	22.7	9.8	11.3	chr17	80575294	80575441	(2682000)	C	L1ME3B	LINE/L1	(3191)	2955	2792	1685241
288	25.5	3.1	0.0	chr17	80575470	80575563	(2681878)	+	MER91C	DNA/hAT-Tip100	30	126	(14)	1685248
1520	27.4	9.9	5.2	chr17	80575618	80576693	(2680748)	C	L1ME3B	LINE/L1	(3403)	2743	1573	1685241
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
42	8.4	4.9	2.4	chr18	7116773	7116853	(73256432)	+	(TTCT)n	Simple_repeat	1	85	(0)	1699530
233	25.3	9.2	1.2	chr18	26511602	26511681	(53861604)	C	MIRb	SINE/MIR	(103)	165	79	1721039
1168	26.1	14.2	3.7	chr18	33403588	33404128	(46969157)	+	L1MCa	LINE/L1	26	632	(5876)	1730673
1028	17.6	7.7	2.0	chr18	33404133	33404376	(46968909)	+	L1MC2	LINE/L1	6077	6335	(9)	1730674
2988	22.4	1.8	2.0	chr18	33404390	33405121	(46968164)	+	L1MB7	LINE/L1	5934	6663	(19)	1730670
525	25.7	7.5	1.7	chr18	34647367	34647564	(45725721)	C	MLT1J1	LTR/ERVL-MaLR	(204)	244	34	1732226
2064	10.8	1.1	2.8	chr18	35288987	35289272	(45084013)	C	AluSx	SINE/Alu	(31)	281	1	1733111
665	16.5	7.6	1.2	chr18	35289777	35289936	(45083349)	+	MER5A	DNA/hAT-Charlie	1	171	(18)	1733112
2352	25.1	4.3	1.1	chr18	35354669	35355657	(45017628)	C	L1MD2	LINE/L1	(5153)	1487	471	1733200
2238	10.6	0.3	0.7	chr18	45973765	45974066	(34399219)	+	AluSp	SINE/Alu	1	301	(12)	1747726
707	24.9	8.2	1.8	chr18	50657048	50657276	(29716009)	C	MLT1L	LTR/ERVL-MaLR	(221)	389	145	1755501
28122	17.0	7.8	7.8	chr18	52790112	52792754	(27580531)	C	HUERS-P3b-int	LTR/ERV1	(7)	2901	90	1758952
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
2382	8.3	0.0	0.6	chr18	59837129	59837441	(20535844)	C	AluY	SINE/Alu	(0)	311	1	1769592
2299	10.5	0.0	0.3	chr18	59837968	59838272	(20535013)	+	AluSx1	SINE/Alu	5	308	(4)	1769593
406	22.2	2.0	0.0	chr19	2019403	2019501	(56598115)	+	L1ME2z	LINE/L1	6058	6158	(286)	1799955
37	0.0	0.0	0.0	chr19	2019620	2019653	(56597963)	+	(T)n	Simple_repeat	1	34	(0)	1799961
28	11.3	3.3	3.2	chr19	2019928	2019988	(56597628)	+	(CTTT)n	Simple_repeat	1	63	(0)	1799962
1129	16.5	5.1	0.5	chr19	2019990	2020177	(56597439)	C	AluJb	SINE/Alu	(3)	309	113	1799963
280	12.4	0.7	3.3	chr19	7354337	7354403	(51263213)	+	FLAM_C	SINE/Alu	14	76	(226)	1812732
191	16.3	0.0	6.5	chr19	7354438	7354483	(51263133)	C	MIR	SINE/MIR	(173)	89	47	1812733
1996	12.5	0.7	1.3	chr19	7354628	7354930	(51262686)	+	AluJo	SINE/Alu	12	312	(0)	1812734
1655	16.4	1.6	1.3	chr19	9769071	9769380	(48848236)	C	AluJr	SINE/Alu	(0)	312	2	1818054
2335	8.0	0.3	0.0	chr19	11596928	11597239	(47020377)	+	AluSq2	SINE/Alu	1	313	(0)	1822764
27	0.0	0.0	0.0	chr19	12401542	12401567	(46216049)	+	(T)n	Simple_repeat	1	26	(0)	1824374
36	0.0	0.0	0.0	chr19	12401570	12401600	(46216016)	+	(GA)n	Simple_repeat	1	31	(0)	1824375
2029	8.1	2.5	1.8	chr19	12401601	12401872	(46215744)	C	AluSg	SINE/Alu	(35)	275	2	1824376
278	27.5	12.1	0.8	chr19	12723377	12723508	(45894108)	+	MIR	SINE/MIR	8	156	(106)	1825079
382	32.4	9.2	0.0	chr19	17336833	17337039	(41280577)	C	L2b	LINE/L2	(158)	3217	2990	1836060
180	34.1	5.5	0.0	chr19	17337067	17337151	(41280465)	C	L3	LINE/CR1	(3010)	1089	1000	1836061
463	26.6	2.9	2.5	chr19	18412935	18413138	(40204478)	C	LTR16C	LTR/ERVL	(61)	428	224	1838855
17	0.0	0.0	0.0	chr19	18413148	18413166	(40204450)	+	(T)n	Simple_repeat	1	19	(0)	1838856
1894	9.7	0.0	1.9	chr19	18413257	18413513	(40204103)	C	AluSx	SINE/Alu	(60)	252	1	1838857
2455	6.1	0.3	0.0	chr19	18571037	18571330	(40046286)	+	AluSp	SINE/Alu	9	303	(10)	1839153
1220	17.2	0.4	0.4	chr19	27330343	27346451	(31271165)	C	ALR/Alpha	Satellite/centr	(0)	16117	1	1847797
1097	17.8	0.4	0.3	chr19	27348171	27362171	(31255445)	C	ALR/Alpha	Satellite/centr	(57)	14013	1	1847799
1175	16.7	0.4	0.3	chr19	27376223	27392067	(31225549)	+	ALR/Alpha	Satellite/centr	1	15859	(0)	1847804
258	25.0	1.5	4.3	chr19	30407777	30407883	(28209733)	C	L1ME4b	LINE/L1	(331)	5792	5723	1851816
679	12.0	0.0	0.0	chr19	32288129	32288220	(26329396)	+	FLAM_C	SINE/Alu	6	97	(46)	1854535
188	21.7	5.5	9.2	chr19	34773510	34773585	(23844031)	+	MIRc	SINE/MIR	85	157	(111)	1859112
525	20.4	9.3	1.4	chr19	34773633	34773771	(23843845)	+	MER5A	DNA/hAT-Charlie	36	186	(3)	1859113
12739	0.5	0.0	2.1	chr19	36270447	36272042	(22345574)	+	SST1	Satellite/centr	1	1563	(0)	1862253
24	29.7	0.0	2.5	chr19	36272043	36272123	(22345493)	+	(GT)n	Simple_repeat	1	81	(0)	1862254
26	23.7	3.8	3.6	chr19	36272113	36272129	(22345487)	+	(CTGTCT)n	Simple_repeat	1	66	(44)	1862255
36	20.5	1.2	1.2	chr19	36272130	36272209	(22345407)	+	(TC)n	Simple_repeat	1	81	(0)	1862256
26	23.7	3.8	3.6	chr19	36272210	36272218	(22345398)	+	(CTGTCT)n	Simple_repeat	67	110	(0)	1862255
15	27.1	2.2	6.5	chr19	36489006	36489096	(22128520)	+	(CAGTCA)n	Simple_repeat	1	93	(0)	1862647
14	20.0	0.0	5.8	chr19	36667250	36667260	(21950356)	+	(ATTT)n	Simple_repeat	1	11	(0)	1863007
1895	4.3	14.7	0.0	chr19	36667261	36667515	(21950101)	+	AluSp	SINE/Alu	1	299	(14)	1863008
1852	8.8	0.0	0.8	chr19	37370320	37370558	(21247058)	+	AluSc5	SINE/Alu	1	237	(72)	1864322
12	19.4	0.0	5.1	chr19	37370707	37370745	(21246871)	+	(CATTCA)n	Simple_repeat	1	39	(0)	1864323
11	20.5	5.1	0.0	chr19	37371221	37371259	(21246357)	+	G-rich	Low_complexity	1	41	(0)	1864324
3195	13.6	3.5	1.1	chr19	39046064	39046591	(19571025)	+	MER66C	LTR/ERV1	1	541	(14)	1868095
699	24.2	13.4	0.0	chr19	39046604	39046830	(19570786)	C	L2a	LINE/L2	(337)	3082	2821	1868094
312	27.5	8.1	10.5	chr19	43519312	43519355	(15098261)	+	Charlie1	DNA/hAT-Charlie	212	245	(2536)	1876989
1076	13.7	2.6	0.0	chr19	43519747	43519915	(15097701)	C	Tigger7	DNA/TcMar-Tigger	(1)	2490	2317	1876991
650	18.2	0.6	1.4	chr19	43519916	43520061	(15097555)	+	FLAM_C	SINE/Alu	2	210	(92)	1876992
804	18.5	0.6	7.8	chr19	43691494	43691575	(14926041)	C	Zaphod3	DNA/hAT-Tip100	(2543)	80	1	1877447
950	30.0	6.7	0.8	chr19	43691838	43692190	(14925426)	+	L1MEd	LINE/L1	561	935	(6151)	1877446
2257	16.2	1.2	1.2	chr19	44164068	44164473	(14453143)	C	L1MB7	LINE/L1	(156)	6028	5623	1878307
1348	20.7	1.9	0.8	chr19	44164479	44164746	(14452870)	C	MLT1A0	LTR/ERVL-MaLR	(94)	271	1	1878309
615	22.7	3.9	3.9	chr19	45326209	45326387	(13291229)	+	MLT1N2	LTR/ERVL-MaLR	17	195	(367)	1881010
803	0.0	0.0	0.0	chr19	45478602	45478687	(13138929)	C	tRNA-SeC(e)-TGA	tRNA	(3)	86	1	1881421
7404	9.5	1.1	0.6	chr19	48259616	48260614	(10357002)	C	LTR13	LTR/ERVK	(0)	1007	4	1888303
189	20.0	16.7	0.0	chr19	53520507	53520551	(5097065)	C	OldhAT1	DNA/hAT-Ac	(929)	1919	1866	1899507
2096	12.8	1.0	0.0	chr19	55118037	55118340	(3499276)	C	AluSc	SINE/Alu	(1)	308	2	1903034
232	30.1	5.2	0.4	chr19	55670357	55670454	(2947162)	C	L2a	LINE/L2	(18)	3408	3251	1904263
26	0.0	0.0	0.0	chr19	57363364	57363388	(1254228)	+	(TGCG)n	Simple_repeat	1	25	(0)	1907684
412	33.2	10.4	2.7	chr19	58304721	58305020	(312596)	+	L1MC4a	LINE/L1	7489	7814	(68)	1909307
15	10.0	0.0	0.0	chr2	389326	389347	(241804182)	+	(GT)n	Simple_repeat	1	22	(0)	1911203
26	6.5	0.0	7.0	chr2	2180775	2180831	(240012698)	+	(TGTACCTGTG)n	Simple_repeat	1	57	(0)	1912928
1422	25.2	11.2	6.3	chr2	3396165	3396871	(238796658)	C	L1MEc	LINE/L1	(4698)	1702	953	1914421
23	16.2	2.0	0.0	chr2	26033766	26033814	(216159715)	+	G-rich	Low_complexity	1	50	(0)	1949188
16	22.7	3.5	1.7	chr2	32011040	32011097	(210182432)	+	(GGCGCAG)n	Simple_repeat	1	60	(0)	1959290
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
217	36.2	8.9	6.3	chr2	42858920	42859093	(199334436)	C	MER5A	DNA/hAT-Charlie	(6)	183	5	1976448
1014	16.2	8.6	10.3	chr2	42859341	42859670	(199333859)	+	MER33	DNA/hAT-Charlie	1	324	(0)	1976449
1460	5.4	0.0	0.0	chr2	45610776	45610941	(196582588)	+	AluYh3	SINE/Alu	130	295	(16)	1980960
429	25.0	7.7	4.6	chr2	45940270	45940420	(196253109)	+	Charlie7	DNA/hAT-Charlie	2	157	(2455)	1981515
2340	10.6	0.0	2.2	chr2	45940777	45941087	(196252442)	+	AluSx1	SINE/Alu	1	304	(8)	1981516
310	5.1	0.0	0.0	chr2	61855355	61855393	(180338136)	C	Alu	SINE/Alu	(112)	190	152	2005332
662	7.6	0.0	0.0	chr2	61855395	61855473	(180338056)	+	AluSx3	SINE/Alu	204	282	(29)	2005333
562	39.5	3.8	4.5	chr2	63850894	63851182	(178342347)	C	L2b	LINE/L2	(2)	3373	3087	2008444
185	40.6	4.3	1.5	chr2	63851225	63851359	(178342170)	C	L2b	LINE/L2	(13)	3362	3224	2008445
15	9.1	0.0	0.0	chr2	64645377	64645400	(177548129)	+	(GAA)n	Simple_repeat	1	24	(0)	2009699
15	5.6	0.0	0.0	chr2	65213248	65213266	(176980263)	+	(CA)n	Simple_repeat	1	19	(0)	2010836
825	24.9	8.2	8.8	chr2	65213267	65213678	(176979851)	C	HAL1	LINE/L1	(19)	2488	2085	2010837
851	19.8	0.0	2.9	chr2	68715189	68715360	(173478169)	+	MER5A	DNA/hAT-Charlie	17	183	(6)	2015979
14	14.4	3.2	0.0	chr2	68715385	68715415	(173478114)	+	(AAC)n	Simple_repeat	1	32	(0)	2015980
262	30.9	13.9	2.5	chr2	68715428	68715782	(173477747)	+	MLT1L	LTR/ERVL-MaLR	172	573	(37)	2015981
2522	15.6	0.6	8.5	chr2	74179169	74179239	(168014290)	C	L1MB7	LINE/L1	(16)	6168	6101	2024932
1874	14.1	4.8	1.0	chr2	74179240	74179537	(168013992)	C	AluJr	SINE/Alu	(1)	311	2	2024933
2522	15.6	0.6	8.5	chr2	74179538	74179577	(168013952)	C	L1MB7	LINE/L1	(84)	6100	6068	2024932
2123	8.5	1.4	7.0	chr2	74179578	74179893	(168013636)	C	AluSz6	SINE/Alu	(14)	298	1	2024934
27696	0.6	0.0	0.0	chr2	86655239	86661268	(155532261)	C	L1HS	LINE/L1	(1)	6154	125	2042998
1823	16.0	4.2	0.0	chr2	86661298	86661615	(155531914)	C	LTR18C	LTR/ERVL	(13)	332	1	2042999
232	25.7	1.4	0.0	chr2	86661618	86661687	(155531842)	C	MIR	SINE/MIR	(60)	202	132	2043000
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
4655	24.4	6.0	3.6	chr2	91895372	91895827	(150297702)	+	L1M4c	LINE/L1	798	1520	(4783)	2049044
2411	5.3	0.0	0.3	chr2	96377103	96377384	(145816145)	C	AluY	SINE/Alu	(10)	301	21	2052037
1195	19.9	3.2	3.8	chr2	96377385	96377682	(145815847)	C	L1M4a1	LINE/L1	(744)	2695	2395	2052036
1261	13.2	5.5	0.0	chr2	96377695	96377898	(145815631)	C	Tigger17	DNA/TcMar-Tigger	(18)	2655	2440	2052038
276	25.9	6.5	2.0	chr2	101776123	101776221	(140417308)	C	MER5A	DNA/hAT-Charlie	(26)	163	45	2060208
381	27.6	4.6	2.7	chr2	101776358	101776506	(140417023)	C	MER102c	DNA/hAT-Charlie	(81)	250	99	2060209
33	31.6	1.5	0.8	chr2	104854134	104854263	(137339266)	+	GA-rich	Low_complexity	1	132	(0)	2064065
13	19.2	2.2	4.3	chr2	104854390	104854434	(137339095)	+	(CACCTC)n	Simple_repeat	1	46	(0)	2064066
297	21.3	3.9	1.3	chr2	108339309	108339384	(133854145)	C	L4_C_Mam	LINE/RTE-X	(169)	4969	4892	2069109
14	10.1	6.2	0.0	chr2	113889918	113889949	(128303580)	+	G-rich	Low_complexity	1	34	(0)	2077575
217	28.9	1.3	2.6	chr2	119765776	119765853	(122427676)	C	L2c	LINE/L2	(319)	3068	2992	2085925
27	25.5	0.0	0.0	chr2	119765865	119765934	(122427595)	+	(TGTG)n	Simple_repeat	1	70	(0)	2085926
333	29.8	8.3	8.8	chr2	119766031	119766247	(122427282)	+	Charlie17a	DNA/hAT-Charlie	2	217	(0)	2085927
228	24.7	4.9	11.0	chr2	119766248	119766348	(122427181)	C	MamTip1	DNA/hAT-Tip100	(17)	250	156	2085928
66	1.7	0.0	0.0	chr2	119766450	119766510	(122427019)	+	(GT)n	Simple_repeat	1	61	(0)	2085929
387	21.3	1.3	0.0	chr2	119766511	119766585	(122426944)	C	MamTip1	DNA/hAT-Tip100	(190)	77	2	2085928
193	29.6	8.3	9.7	chr2	119766603	119766797	(122426732)	C	L2c	LINE/L2	(568)	2851	2660	2085925
14	14.1	0.0	3.0	chr2	131802599	131802631	(110390898)	+	G-rich	Low_complexity	1	33	(0)	2103745
2490	15.7	1.1	3.2	chr2	131802642	131803123	(110390406)	+	TAR1	Satellite/telo	1	471	(308)	2103746
67	0.0	0.0	0.0	chr2	161278891	161278950	(80914579)	+	(TCCT)n	Simple_repeat	1	60	(0)	2144204
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
651	31.5	5.2	0.5	chr2	178522694	178522894	(63670635)	C	MIR	SINE/MIR	(0)	262	52	2169225
1915	14.1	1.3	1.3	chr2	190383166	190383464	(51810065)	C	AluSx3	SINE/Alu	(11)	300	2	2184277
254	26.2	4.6	7.2	chr2	197704980	197705090	(44488439)	C	L2c	LINE/L2	(38)	3349	3242	2194509
20	18.7	1.4	7.0	chr2	197705224	197705240	(44488289)	+	(GGCG)n	Simple_repeat	1	66	(0)	2194510
21	14.3	2.1	2.0	chr2	197705241	197705288	(44488241)	+	(GGCGG)n	Simple_repeat	1	49	(0)	2194511
12	4.2	0.0	10.0	chr2	200963841	200963870	(41229659)	+	(CCTTT)n	Simple_repeat	1	30	(0)	2199238
5435	15.6	2.9	1.5	chr2	204396891	204397915	(37795614)	+	L1MC1	LINE/L1	5288	6327	(6)	2205567
303	27.4	5.9	2.3	chr2	215653360	215653490	(26540039)	C	MIRc	SINE/MIR	(19)	249	114	2221428
387	23.4	0.0	1.3	chr2	219103869	219103946	(23089583)	C	MIRb	SINE/MIR	(156)	112	36	2227350
17	15.2	4.3	2.1	chr2	219104038	219104083	(23089446)	+	(TTTG)n	Simple_repeat	1	48	(0)	2227351
283	25.8	13.1	0.0	chr2	219104142	219104234	(23089295)	+	MER91C	DNA/hAT-Tip100	32	138	(2)	2227352
18	26.3	2.4	3.6	chr2	219178294	219178375	(23015154)	+	(CGGCGG)n	Simple_repeat	1	84	(0)	2227459
250	31.8	1.8	2.7	chr2	227406635	227406744	(14786785)	C	L2a	LINE/L2	(2)	3424	3316	2240428
1795	20.1	5.8	1.5	chr2	231515704	231516098	(10677431)	+	MER39	LTR/ERV1	294	706	(1)	2247036
351	23.2	2.0	2.0	chr2	231831871	231831971	(10361558)	+	MER20	DNA/hAT-Charlie	119	219	(0)	2247712
328	25.0	2.1	0.0	chr2	231831972	231832061	(10361468)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247712
364	22.7	1.1	0.0	chr2	231832103	231832190	(10361339)	+	MER20	DNA/hAT-Charlie	131	219	(0)	2247713
310	24.2	3.2	0.0	chr2	231832191	231832279	(10361250)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
268	25.3	2.2	0.0	chr2	231832282	231832368	(10361161)	+	MER20	DNA/hAT-Charlie	131	219	(0)	2247713
339	22.0	3.2	0.0	chr2	231832369	231832457	(10361072)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
326	23.1	3.2	0.0	chr2	231832458	231832546	(10360983)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
316	23.8	14.6	0.9	chr2	232652487	232652592	(9540937)	+	MIRb	SINE/MIR	125	247	(21)	2249047
273	30.3	0.0	0.0	chr2	232652626	232652691	(9540838)	+	MIRc	SINE/MIR	172	237	(31)	2249048
20	4.2	0.0	0.0	chr2	235514163	235514187	(6679342)	+	(CA)n	Simple_repeat	1	25	(0)	2253763
375	25.2	7.5	1.4	chr2	236343365	236343543	(5849986)	C	MIRb	SINE/MIR	(15)	193	10	2254882
2339	6.5	4.0	0.0	chr20	1900092	1900383	(62543784)	C	AluSp	SINE/Alu	(4)	309	6	2265858
1087	25.9	10.4	1.8	chr20	2471024	2471471	(61972696)	+	L2a	LINE/L2	2926	3416	(10)	2267029
1658	14.1	8.5	0.0	chr20	18506893	18507183	(45936984)	+	L1PA16	LINE/L1	5827	6144	(22)	2292787
303	20.5	9.3	0.0	chr20	18507204	18507281	(45936886)	+	LTR37-int	LTR/ERV1	1438	1523	(2537)	2292784
1115	15.3	0.3	0.0	chr20	29737065	29738766	(34705401)	C	ALR/Alpha	Satellite/centr	(30)	1706	1	2304484
1265	13.1	0.6	0.7	chr20	29917407	29978043	(34466124)	+	ALR/Alpha	Satellite/centr	1	60588	(0)	2304639
1223	12.9	0.3	0.4	chr20	30017663	30030437	(34413730)	+	ALR/Alpha	Satellite/centr	1	12769	(0)	2304644
1204	13.2	0.5	0.4	chr20	30030839	30038347	(34405820)	+	ALR/Alpha	Satellite/centr	1	7515	(0)	2304647
1266	13.4	0.7	0.4	chr20	30128160	30140821	(34303346)	+	ALR/Alpha	Satellite/centr	1	12697	(0)	2304650
2860	28.3	4.9	5.5	chr20	30283322	30285229	(34158938)	+	SST1	Satellite/centr	1	1895	(14)	2304820
1222	17.0	0.6	0.4	chr20	30457460	30482231	(33961936)	+	ALR/Alpha	Satellite/centr	1	24819	(0)	2305034
1159	13.1	0.5	0.0	chr20	30519545	30520660	(33923507)	C	ACRO1	Satellite/acro	(55)	1121	1	2305115
1188	16.0	0.5	0.3	chr20	30925093	30943023	(33501144)	+	ALR/Alpha	Satellite/centr	1	17965	(0)	2305625
771	25.3	6.5	1.4	chr20	31260187	31260406	(33183761)	C	MIR	SINE/MIR	(8)	254	23	2305675
1008	27.7	6.1	3.8	chr20	33947611	33947978	(30496189)	C	MamGypLTR3a	LTR/Gypsy	(4)	977	601	2311980
319	28.6	16.6	1.8	chr20	33947979	33948142	(30496025)	+	L2a	LINE/L2	3234	3426	(0)	2311981
12	9.8	0.0	0.0	chr20	33948153	33948174	(30495993)	+	(ATGC)n	Simple_repeat	1	22	(0)	2311982
255	32.4	1.8	2.6	chr20	37289861	37289974	(27154193)	C	MIR3	SINE/MIR	(77)	131	19	2319673
261	33.1	4.0	9.6	chr20	45362669	45362825	(19081342)	+	MIR3	SINE/MIR	47	194	(14)	2335497
4733	14.7	6.2	0.5	chr20	46706390	46707162	(17737005)	C	LTR8B	LTR/ERV1	(0)	820	1	2338273
790	23.3	13.4	1.6	chr20	46707163	46707263	(17736904)	C	LTR83	LTR/ERVL	(155)	625	496	2338272
619	30.1	11.2	6.7	chr20	50744408	50745057	(13699110)	+	L2c	LINE/L2	2730	3381	(6)	2347621
458	24.3	7.6	1.0	chr20	64119945	64120138	(324029)	+	MIRc	SINE/MIR	2	194	(68)	2370515
28	0.0	0.0	0.0	chr20	64120329	64120359	(323808)	+	(AG)n	Simple_repeat	1	31	(0)	2370516
43	0.0	0.0	0.0	chr20	64120360	64120396	(323771)	+	(GT)n	Simple_repeat	1	37	(0)	2370517
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
37669	0.4	1.2	0.8	chr21	8397807	8401980	(38308003)	+	LSU-rRNA_Hsa	rRNA	878	5034	(1)	2373509
24	15.5	7.0	0.0	chr21	8401981	8402037	(38307946)	+	(CG)n	Simple_repeat	1	61	(0)	2373511
14	13.3	9.8	0.0	chr21	8402028	8402068	(38307915)	+	(CGTC)n	Simple_repeat	1	45	(0)	2373512
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
12	20.8	0.0	2.9	chr21	8434102	8434136	(38275847)	+	(CCG)n	Simple_repeat	1	35	(0)	2373611
25399	0.2	1.5	0.8	chr21	8441146	8441992	(38267991)	+	LSU-rRNA_Hsa	rRNA	1	877	(4158)	2373624
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
342	35.4	4.7	0.0	chr21	9126682	9126862	(37583121)	+	L4_B_Mam	LINE/RTE-X	4232	4421	(520)	2374264
1738	18.7	0.7	1.0	chr21	9144154	9144447	(37565536)	C	AluJb	SINE/Alu	(18)	294	2	2374279
3424	21.2	4.9	9.9	chr21	9144448	9144867	(37565116)	C	LTR49-int	LTR/ERV1	(1760)	4571	4283	2374278
1562	29.8	5.6	6.5	chr21	9817901	9819192	(36890791)	C	SST1	Satellite/centr	(1)	1562	284	2374896
20	28.0	1.7	0.0	chr21	9819212	9819271	(36890712)	+	GA-rich	Low_complexity	1	61	(0)	2374897
1996	29.3	5.0	5.8	chr21	9819321	9820600	(36889383)	C	SST1	Satellite/centr	(11)	1552	284	2374899
1750	28.6	6.0	7.2	chr21	9822132	9823427	(36886556)	C	SST1	Satellite/centr	(1)	1562	284	2374905
3733	5.1	0.8	0.0	chr21	10269869	10270342	(36439641)	+	HSATI	Satellite	90	567	(10)	2375347
1732	14.4	0.0	5.1	chr21	10270343	10270634	(36439349)	+	AluSc8	SINE/Alu	13	289	(22)	2375348
385	25.4	26.8	2.6	chr21	28991945	28992380	(17717603)	C	L2a	LINE/L2	(6)	3420	2818	2397560
22	7.2	0.0	0.0	chr21	29499600	29499628	(17210355)	+	(TC)n	Simple_repeat	1	29	(0)	2398418
1272	21.1	7.4	3.7	chr21	31722961	31723231	(14986752)	+	Zaphod3	DNA/hAT-Tip100	1984	2265	(358)	2401937
1406	12.1	0.0	0.5	chr21	31723254	31723496	(14986487)	+	AluSx	SINE/Alu	85	312	(0)	2401939
607	25.1	16.2	1.8	chr21	31723501	31723784	(14986199)	+	MER97d	DNA/hAT-Tip100	873	1205	(0)	2401940
616	29.8	5.1	3.3	chr21	34021756	34021967	(12688016)	C	MIRb	SINE/MIR	(50)	218	3	2406011
504	24.7	10.0	1.6	chr21	34030010	34030338	(12679645)	C	MLT1J2	LTR/ERVL-MaLR	(22)	426	1	2406026
652	26.4	6.3	4.0	chr21	34030341	34030589	(12679394)	+	MLT1L	LTR/ERVL-MaLR	344	598	(12)	2406027
194	33.1	9.1	4.4	chr21	45108962	45109097	(1600886)	C	MIR	SINE/MIR	(96)	166	24	2422534
68	35.8	0.0	0.5	chr21	45109130	45109349	(1600634)	+	(TG)n	Simple_repeat	1	220	(0)	2422535
284	21.9	23.9	0.0	chr21	45109566	45109670	(1600313)	+	L2a	LINE/L2	3289	3426	(0)	2422536
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
194	23.1	0.0	1.9	chr22	11817844	11817896	(39000572)	C	MER5A	DNA/hAT-Charlie	(20)	169	118	2425392
590	21.9	0.2	0.0	chr22	11818875	11819136	(38999332)	+	ACRO1	Satellite/acro	1	262	(0)	2425395
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
520	22.2	3.6	0.0	chr22	16917552	16917686	(33900782)	C	LTR55	LTR/ERVL?	(7)	541	402	2427984
784	23.5	9.7	3.5	chr22	16917716	16917963	(33900505)	C	LTR55	LTR/ERVL?	(205)	343	72	2427984
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
3905	19.2	4.8	1.8	chr22	19779977	19780770	(31037698)	C	L1MB3	LINE/L1	(0)	6291	5492	2432535
7558	8.4	2.6	0.5	chr22	19947258	19948243	(30870225)	C	LTR13	LTR/ERVK	(0)	1007	1	2432723
12	19.6	2.9	0.0	chr22	20916855	20916889	(29901579)	+	(TCACTC)n	Simple_repeat	1	36	(0)	2434226
229	22.6	1.9	0.0	chr22	23914277	23914329	(26904139)	C	L1M5	LINE/L1	(359)	5764	5711	2439191
1131	24.2	4.8	2.5	chr22	23914415	23914925	(26903543)	C	L1ME3Cz	LINE/L1	(743)	5403	4946	2439192
31	6.0	0.0	6.7	chr22	30968842	30968901	(19849567)	+	(GCC)n	Simple_repeat	1	60	(0)	2453682
2463	15.8	7.0	1.9	chr22	31497225	31497688	(19320780)	+	Tigger1	DNA/TcMar-Tigger	24	512	(1906)	2454913
2583	9.9	0.0	0.0	chr22	33122346	33122658	(17695810)	C	AluSq2	SINE/Alu	(0)	313	1	2458441
6832	15.2	4.5	2.9	chr22	33122659	33123609	(17694859)	C	MER66-int	LTR/ERV1	(4512)	2164	1210	2458440
2393	7.8	1.0	0.0	chr22	38352792	38353109	(12465359)	C	AluSp	SINE/Alu	(0)	313	2	2469341
12	30.3	0.0	2.0	chr22	38353110	38353146	(12465322)	+	(TTTA)n	Simple_repeat	1	37	(0)	2469342
219	26.0	5.2	6.8	chr22	38353593	38353769	(12464699)	+	MIRc	SINE/MIR	22	199	(69)	2469343
6182	13.4	1.4	2.3	chr22	42116374	42117326	(8701142)	C	L1PBa	LINE/L1	(5003)	1860	921	2477446
431	25.0	5.7	1.5	chr22	42117329	42117462	(8701006)	C	L1M4	LINE/L1	(3317)	2829	2690	2477448
292	27.3	10.6	2.6	chr22	43152694	43152806	(7665662)	C	MIRb	SINE/MIR	(134)	134	12	2479721
47	26.6	4.1	2.0	chr22	43152990	43153020	(7665448)	+	(CTTT)n	Simple_repeat	1	38	(127)	2479722
16	6.8	6.5	0.0	chr22	43153021	43153051	(7665417)	+	(CCTCC)n	Simple_repeat	1	33	(0)	2479723
47	26.6	4.1	2.0	chr22	43153052	43153151	(7665317)	+	(CTTT)n	Simple_repeat	39	165	(0)	2479722
1037	16.4	0.0	2.9	chr22	43153152	43153322	(7665146)	C	FRAM	SINE/Alu	(10)	166	1	2479724
401	30.1	12.6	1.2	chr22	48917222	48917389	(1901079)	+	MIRb	SINE/MIR	14	207	(61)	2488753
250	34.1	2.5	1.2	chr22	50209523	50209650	(608818)	+	MIR1_Amn	SINE/MIR	70	197	(71)	2490333
2491	2.4	0.3	0.0	chr22	50341713	50342004	(476464)	+	AluYm1	SINE/Alu	1	293	(18)	2490486
546	21.8	29.2	4.0	chr22	50342271	50342602	(475866)	C	LTR41	LTR/ERVL	(308)	460	5	2490487
651	30.1	4.3	2.9	chr3	4824257	4824461	(193471098)	C	MIRb	SINE/MIR	(33)	235	28	2499637
186	18.9	0.0	5.1	chr3	4824908	4824946	(193470613)	C	X6B_LINE	LINE/CR1	(44)	1028	992	2499638
209	36.7	2.4	0.0	chr3	9363318	9363437	(188932122)	+	MIR3	SINE/MIR	34	156	(52)	2507069
195	34.5	8.2	2.2	chr3	9363444	9363535	(188932024)	+	L2b	LINE/L2	3256	3353	(22)	2507070
264	19.3	5.0	0.0	chr3	9363541	9363597	(188931962)	C	Charlie24	DNA/hAT-Charlie	(9)	2441	2382	2507071
185	22.4	7.5	0.0	chr3	9363707	9363755	(188931804)	+	L2c	LINE/L2	3322	3374	(13)	2507072
1741	24.7	6.8	4.3	chr3	11539837	11540440	(186755119)	C	L1ME2	LINE/L1	(272)	5892	5273	2511640
1393	24.3	1.7	1.9	chr3	13451754	13452164	(184843395)	+	MER66A	LTR/ERV1	29	438	(40)	2515277
941	23.5	3.7	9.8	chr3	13452182	13452232	(184843327)	+	L1ME2	LINE/L1	5713	5765	(399)	2515259
2176	10.7	0.0	0.0	chr3	13452233	13452542	(184843017)	+	AluSg	SINE/Alu	1	310	(0)	2515278
1320	28.5	4.4	2.3	chr3	43142250	43142842	(155152717)	C	L2a	LINE/L2	(0)	3426	2825	2560210
325	33.1	0.9	1.1	chr3	48845144	48845274	(149450285)	C	MIRb	SINE/MIR	(93)	175	45	2570094
19	0.0	0.0	0.0	chr3	49295715	49295735	(148999824)	+	(CA)n	Simple_repeat	1	21	(0)	2571013
355	31.0	12.0	4.2	chr3	49295845	49296036	(148999523)	+	MIR	SINE/MIR	8	216	(46)	2571014
13	24.0	3.9	1.9	chr3	49470074	49470124	(148825435)	+	G-rich	Low_complexity	1	53	(0)	2571452
16	26.7	0.0	3.5	chr3	49470325	49470381	(148825178)	+	(GGC)n	Simple_repeat	1	57	(0)	2571453
503	21.1	0.7	17.4	chr3	49930311	49930378	(148365181)	C	MER5B	DNA/hAT-Charlie	(0)	178	123	2572230
2172	13.0	0.7	0.7	chr3	55091168	55091475	(143204084)	+	AluSz	SINE/Alu	3	310	(2)	2579941
1474	31.4	11.2	6.3	chr3	57538586	57539601	(140755958)	+	L2a	LINE/L2	2130	3213	(213)	2584121
2610	8.9	0.0	1.0	chr3	57539602	57539915	(140755644)	C	AluSc8	SINE/Alu	(0)	311	1	2584122
439	21.2	5.8	2.6	chr3	58463436	58463551	(139832008)	+	L1ME2z	LINE/L1	6318	6437	(7)	2586063
2341	10.4	0.7	0.0	chr3	66137827	66138133	(132157426)	C	AluSz	SINE/Alu	(3)	309	1	2598778
15	13.2	0.0	5.4	chr3	66139020	66139056	(132156503)	+	(CCCCT)n	Simple_repeat	1	37	(0)	2598779
284	24.2	15.1	8.2	chr3	72899031	72899055	(125396504)	+	MER91A	DNA/hAT-Tip100	139	163	(33)	2610154
301	30.0	0.0	0.0	chr3	72899071	72899150	(125396409)	+	MIR	SINE/MIR	3	82	(180)	2610156
320	21.9	0.0	9.6	chr3	75668819	75668954	(122626605)	C	LSAU	Satellite	(374)	124	2	2614560
333	30.8	3.6	0.6	chr3	81026993	81027152	(117268407)	C	L1MEg1	LINE/L1	(3761)	3476	3312	2621499
16	25.5	0.0	0.0	chr3	81027161	81027195	(117268364)	+	(TG)n	Simple_repeat	1	35	(0)	2621500
265	17.1	0.0	0.0	chr3	82132655	82132695	(116162864)	C	MamGypLTR1b	LTR/Gypsy	(364)	418	378	2622997
1440	27.5	5.1	4.5	chr3	82132746	82133213	(116162346)	+	BLACKJACK	DNA/hAT-Blackjack	8	478	(2491)	2622998
13220	17.4	4.9	1.7	chr3	83396305	83399179	(114896380)	+	L1PBa	LINE/L1	3383	6355	(568)	2624535
1734	15.7	1.4	4.7	chr3	83399180	83399478	(114896081)	C	AluJb	SINE/Alu	(22)	290	2	2624537
1114	17.0	0.8	0.1	chr3	90262816	90264835	(108030724)	C	ALR/Alpha	Satellite/centr	(0)	2032	1	2632984
47	0.0	0.0	0.0	chr3	97765212	97765251	(100530308)	+	(GT)n	Simple_repeat	1	40	(0)	2638216
9765	14.9	2.6	1.2	chr3	104578078	104579684	(93715875)	C	THE1D-int	LTR/ERVL-MaLR	(0)	1631	1	2647160
287	31.0	9.0	5.4	chr3	113514548	113514765	(84780794)	+	L2c	LINE/L2	3022	3268	(107)	2659311
2744	3.6	0.0	0.0	chr3	113515339	113515644	(84779915)	+	AluYk4	SINE/Alu	1	306	(5)	2659312
1804	27.3	5.4	0.0	chr3	123918399	123918871	(74376688)	+	L1MA7	LINE/L1	508	1007	(5772)	2674501
2094	8.4	2.1	1.4	chr3	128680350	128680635	(69614924)	C	AluSg	SINE/Alu	(22)	288	1	2682211
1566	10.1	0.0	0.5	chr3	135953589	135953795	(62341764)	C	AluSq2	SINE/Alu	(13)	300	95	2693577
15828	14.8	2.0	4.4	chr3	135953817	135955272	(62340287)	C	L1M3f	LINE/L1	(602)	7117	5799	2693578
2295	13.4	0.0	0.0	chr3	142554954	142555266	(55740293)	+	AluSq2	SINE/Alu	1	313	(0)	2704297
913	19.8	3.7	3.2	chr3	142595960	142596147	(55699412)	+	MER5A	DNA/hAT-Charlie	1	189	(0)	2704383
12	31.9	3.2	0.0	chr3	142596364	142596425	(55699134)	+	G-rich	Low_complexity	1	64	(0)	2704384
2500	6.4	1.3	0.7	chr3	143007445	143007742	(55287817)	C	AluYk3	SINE/Alu	(11)	300	1	2705066
12	6.9	5.9	5.6	chr3	146544852	146544885	(51750674)	+	(GGAACT)n	Simple_repeat	1	36	(0)	2709708
16	10.3	0.0	5.7	chr3	146545042	146545076	(51750483)	+	(TTTC)n	Simple_repeat	1	35	(0)	2709709
15	5.6	0.0	0.0	chr3	173584241	173584259	(24711300)	+	(A)n	Simple_repeat	1	19	(0)	2747754
35	0.0	0.0	0.0	chr3	173584400	173584432	(24711127)	+	(T)n	Simple_repeat	1	33	(0)	2747755
15	4.8	0.0	0.0	chr3	173584469	173584490	(24711069)	+	(AAGA)n	Simple_repeat	1	22	(0)	2747756
39	2.7	0.0	0.0	chr3	184133898	184133935	(14161624)	+	(GT)n	Simple_repeat	1	38	(0)	2764086
193	33.1	4.4	4.4	chr3	184133940	184134075	(14161484)	C	L3b	LINE/CR1	(242)	4990	4855	2764087
2285	10.7	0.0	0.3	chr4	474595	474902	(189739653)	+	AluSg4	SINE/Alu	1	307	(3)	2789144
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
14	13.7	0.0	5.6	chr4	49289254	49289289	(140925266)	+	(TTTTGC)n	Simple_repeat	1	36	(0)	2865068
1804	12.9	6.2	0.0	chr4	49289292	49289578	(140924977)	C	L1PA10	LINE/L1	(0)	6168	5863	2865069
290	27.5	0.0	0.0	chr4	49313048	49313116	(140901439)	C	MER47C	DNA/TcMar-Tigger	(28)	69	1	2865111
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
842	21.1	0.6	1.8	chr4	56086278	56086443	(134128112)	C	AluJb	SINE/Alu	(12)	300	137	2871995
13	18.2	0.0	4.9	chr4	65670313	65670353	(124544202)	+	(GCTGAGG)n	Simple_repeat	1	41	(0)	2884662
448	23.0	5.4	0.1	chr4	70750350	70750488	(119464067)	C	L1MC5a	LINE/L1	(259)	2518	2388	2891114
3340	17.8	6.6	8.0	chr4	70750511	70751072	(119463483)	C	L1MB7	LINE/L1	(0)	6184	5658	2891115
13	19.6	2.2	4.3	chr4	74158303	74158347	(116056208)	+	(GGTGGC)n	Simple_repeat	1	46	(0)	2895789
23932	10.1	2.4	0.9	chr4	83506441	83509926	(106704629)	C	HERVH48-int	LTR/ERV1	(2532)	4122	586	2909669
348	25.6	10.9	3.4	chr4	86895539	86895716	(103318839)	C	MamTip1	DNA/hAT-Tip100	(3)	264	72	2914548
35	20.6	2.4	0.0	chr4	86895725	86895808	(103318747)	+	(CTCTAT)n	Simple_repeat	1	86	(0)	2914549
23	31.3	5.2	0.7	chr4	88379171	88379305	(101835250)	+	G-rich	Low_complexity	1	142	(0)	2917064
2637	16.3	7.0	1.1	chr4	98914429	98914950	(91299605)	+	L1MC1	LINE/L1	5768	6322	(11)	2930915
1910	13.7	0.0	2.8	chr4	98914957	98915240	(91299315)	C	AluJb	SINE/Alu	(25)	287	12	2930916
387	26.6	0.9	0.9	chr4	100168163	100168276	(90046279)	+	Tigger9a	DNA/TcMar-Tigger	2	115	(617)	2932712
518	24.8	3.6	0.8	chr4	100168595	100168728	(90045827)	+	Tigger9a	DNA/TcMar-Tigger	564	701	(31)	2932713
194	20.4	5.3	0.0	chr4	102868710	102868763	(87345792)	C	MIRc	SINE/MIR	(14)	254	198	2936282
14	20.3	0.0	7.5	chr4	102868954	102869006	(87345549)	+	(GGCC)n	Simple_repeat	1	53	(0)	2936283
196	35.6	4.2	0.9	chr4	102869781	102869896	(87344659)	+	L3	LINE/CR1	3241	3360	(739)	2936284
395	31.5	11.2	11.2	chr4	102869962	102870472	(87344083)	+	L3	LINE/CR1	3577	4087	(12)	2936284
2538	6.8	0.0	0.0	chr4	107720854	107721149	(82493406)	C	AluSg	SINE/Alu	(14)	296	1	2942431
406	7.1	0.0	0.0	chr4	110411453	110411508	(79803047)	+	MER4A	LTR/ERV1	609	664	(0)	2946567
430	29.1	4.6	0.4	chr4	110412311	110412541	(79802014)	C	L1MEh	LINE/L1	(1235)	1000	760	2946569
230	25.0	3.5	0.0	chr4	110412643	110412698	(79801857)	+	MIR	SINE/MIR	200	257	(5)	2946570
1175	22.3	12.6	2.1	chr4	110412706	110413131	(79801424)	C	MLT1E2	LTR/ERVL-MaLR	(8)	619	143	2946571
182	33.6	11.7	5.3	chr4	113693085	113693235	(76521320)	+	Tigger19b	DNA/TcMar-Tigger	230	391	(159)	2951158
3264	19.2	7.6	1.0	chr4	121381374	121382526	(68832029)	C	L1MD2	LINE/L1	(54)	6188	5010	2961004
38	0.0	0.0	0.0	chr4	126428256	126428288	(63786267)	+	(AC)n	Simple_repeat	1	33	(0)	2967799
2302	14.3	7.2	1.2	chr4	137179073	137179503	(53035052)	+	MER65C	LTR/ERV1	3	461	(0)	2981371
188	26.4	16.3	1.4	chr4	140523750	140523822	(49690733)	+	MIRb	SINE/MIR	131	216	(52)	2986358
15	22.4	4.3	0.0	chr4	169791712	169791758	(20422797)	+	(GGCG)n	Simple_repeat	1	49	(0)	3026840
1982	13.2	0.0	1.0	chr4	169792029	169792330	(20422225)	+	AluSq	SINE/Alu	1	299	(14)	3026841
36	0.0	0.0	0.0	chr4	183049821	183049851	(7164704)	+	(AC)n	Simple_repeat	1	31	(0)	3044292
15	23.7	0.0	0.0	chr4	183049922	183049961	(7164594)	+	A-rich	Low_complexity	1	40	(0)	3044293
7411	18.1	4.7	4.5	chr4	183050052	183051884	(7162671)	+	L1M3	LINE/L1	3730	5551	(761)	3044294
15	13.3	7.3	0.0	chr4	183504266	183504306	(6710249)	+	(CGCACGC)n	Simple_repeat	1	44	(0)	3045071
14	3.6	6.7	3.1	chr4	183504426	183504455	(6710100)	+	(CGGAG)n	Simple_repeat	1	32	(0)	3045072
398	23.5	0.7	2.2	chr4	190022652	190022790	(191765)	+	LSAU	Satellite	2	138	(360)	3054526
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
29	2.6	0.0	2.4	chr5	11838	11879	(181526380)	+	(GACCCC)n	Simple_repeat	1	42	(0)	3054966
7973	10.4	3.5	1.2	chr5	11943	13334	(181524925)	C	TAR1	Satellite/telo	(43)	2068	644	3054967
295	28.9	16.2	6.5	chr5	14663647	14663971	(166874288)	+	L2	LINE/L2	2704	3066	(353)	3072508
1057	26.7	8.2	7.0	chr5	19902184	19902710	(161635549)	+	MLT1F2	LTR/ERVL-MaLR	3	536	(33)	3079945
4645	17.7	6.0	1.2	chr5	23506304	23507244	(158031015)	+	L1P4a	LINE/L1	431	1419	(5084)	3084855
2785	2.0	0.0	0.3	chr5	31878556	31878860	(149659399)	C	AluYe5	SINE/Alu	(6)	304	1	3095762
27	19.1	4.7	5.4	chr5	37371280	37371385	(144166874)	+	G-rich	Low_complexity	1	111	(0)	3104376
193	30.0	5.4	1.4	chr5	37371870	37371940	(144166319)	C	L2c	LINE/L2	(23)	3364	3291	3104377
277	43.1	0.3	0.4	chr5	38822988	38823225	(142715034)	+	(TA)n	Simple_repeat	2	238	(0)	3106730
2435	17.2	6.5	1.2	chr5	38823406	38823899	(142714360)	+	L1MA9	LINE/L1	5781	6302	(10)	3106727
17642	10.2	3.5	1.2	chr5	43072721	43075264	(138462995)	C	HERVH48-int	LTR/ERV1	(4050)	2604	1	3112489
1594	15.0	7.0	0.0	chr5	62316510	62316803	(119221456)	+	L1MC1	LINE/L1	5988	6303	(30)	3133554
2269	10.8	0.7	0.0	chr5	62317053	62317347	(119220912)	C	AluSp	SINE/Alu	(16)	297	1	3133555
409	15.1	8.5	1.1	chr5	67209065	67209151	(114329108)	C	MER3	DNA/hAT-Charlie	(39)	170	77	3140507
371	35.8	9.5	1.0	chr5	72062986	72063177	(109475082)	+	L3	LINE/CR1	3862	4071	(28)	3148440
308	29.4	1.2	0.0	chr5	72063562	72063646	(109474613)	C	MIR3	SINE/MIR	(3)	205	120	3148441
35	0.0	0.0	0.0	chr5	73246287	73246316	(108291943)	+	(CA)n	Simple_repeat	1	30	(0)	3150212
13	12.7	0.0	0.0	chr5	80557764	80557789	(100980470)	+	(AAAAC)n	Simple_repeat	1	26	(0)	3161799
2680	19.6	4.4	1.5	chr5	85181915	85182751	(96355508)	+	LTR27E	LTR/ERV1	1	1073	(4)	3168228
233	23.1	3.7	0.0	chr5	96745283	96745334	(84792925)	+	MIR	SINE/MIR	204	257	(5)	3183050
12	15.3	3.5	0.0	chr5	96745379	96745407	(84792852)	+	(TGTTT)n	Simple_repeat	1	30	(0)	3183051
28	14.7	3.2	1.6	chr5	103258663	103258724	(78279535)	+	GA-rich	Low_complexity	1	64	(0)	3191197
1675	12.5	0.9	0.4	chr5	106535533	106535764	(75002495)	C	AluSc	SINE/Alu	(27)	282	50	3195261
430	31.2	0.7	2.7	chr5	135269930	135270077	(46268182)	C	MER131	DNA?	(64)	151	7	3234092
18	17.6	0.0	0.0	chr5	136134038	136134069	(45404190)	+	G-rich	Low_complexity	1	32	(0)	3235279
667	16.1	0.0	4.6	chr5	139562953	139563082	(41975177)	C	AluJo	SINE/Alu	(188)	124	1	3241050
1985	16.7	0.3	0.3	chr5	140379006	140379311	(41158948)	C	AluJr	SINE/Alu	(6)	306	1	3242493
1248	13.2	0.5	2.6	chr5	140379312	140379327	(41158932)	C	AluSp	SINE/Alu	(180)	133	120	3242491
384	22.7	5.7	3.2	chr5	140379328	140379514	(41158745)	C	L1ME3B	LINE/L1	(4919)	2184	1993	3242484
440	19.5	2.4	0.0	chr5	140379528	140379609	(41158650)	C	L2	LINE/L2	(823)	2596	2513	3242494
16	0.0	0.0	0.0	chr5	142325276	142325292	(39212967)	+	(T)n	Simple_repeat	1	17	(0)	3245723
305	30.9	8.3	0.9	chr5	144170972	144171082	(37367177)	C	MIRb	SINE/MIR	(23)	245	126	3248872
483	28.5	4.5	5.3	chr5	145975732	145975965	(35562294)	+	MIR	SINE/MIR	21	247	(15)	3251632
12	16.3	2.8	2.7	chr5	151772241	151772276	(29765983)	+	(GCGCGT)n	Simple_repeat	1	37	(0)	3262615
287	34.3	6.8	1.7	chr5	154686294	154686474	(26851785)	C	L2b	LINE/L2	(222)	3153	2963	3267783
716	22.5	12.5	2.8	chr5	154686481	154686710	(26851549)	+	MER102c	DNA/hAT-Charlie	70	301	(30)	3267784
410	31.9	0.6	1.2	chr5	158451234	158451395	(23086864)	C	MamRep434	DNA/TcMar-Tigger	(264)	162	2	3274616
26	12.1	0.0	0.0	chr5	160421951	160421995	(21116264)	+	(GGGCTG)n	Simple_repeat	1	45	(0)	3278133
436	25.0	0.9	1.7	chr5	174327861	174327978	(7210281)	+	MIRb	SINE/MIR	35	151	(117)	3301294
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
2203	10.0	0.4	0.0	chr5	179023135	179023414	(2514845)	C	AluSc8	SINE/Alu	(30)	281	1	3310247
2468	8.0	0.3	0.0	chr5	181188094	181188405	(349854)	+	AluSp	SINE/Alu	1	313	(0)	3313823
670	1.4	0.0	0.0	chr5	181188416	181188488	(349771)	C	tRNA-Val-GTY	tRNA	(3)	73	1	3313824
487	34.9	0.0	0.0	chr6	1291201	1291352	(169514627)	C	MIR3	SINE/MIR	(10)	198	47	3315896
25	9.4	0.0	0.0	chr6	10407484	10407518	(160398461)	+	(T)n	Simple_repeat	1	35	(0)	3329446
493	24.0	7.4	1.3	chr6	15303974	15304125	(155501854)	+	MIR	SINE/MIR	79	240	(22)	3337761
15	12.2	6.2	3.9	chr6	19772893	19772940	(151033039)	+	(TATTGTT)n	Simple_repeat	1	51	(0)	3344896
623	4.2	0.0	0.0	chr6	26311747	26311818	(144494161)	C	tRNA-Gln-CAA	tRNA	(3)	72	1	3354997
650	1.4	0.0	0.0	chr6	26537498	26537570	(144268409)	+	tRNA-Arg-CGY_	tRNA	1	73	(3)	3355427
678	4.8	0.0	0.0	chr6	27230555	27230637	(143575342)	C	tRNA-Leu-TTA	tRNA	(3)	83	1	3356540
240	3.3	0.0	0.0	chr6	27230967	27230996	(143574983)	C	Alu	SINE/Alu	(79)	223	194	3356541
1026	14.0	15.7	4.3	chr6	27601965	27602199	(143203780)	C	AluJo	SINE/Alu	(7)	305	39	3357200
2277	12.7	0.0	0.9	chr6	27602220	27602534	(143203445)	C	AluSx1	SINE/Alu	(0)	312	1	3357201
595	0.0	0.0	22.2	chr6	27602568	27602675	(143203304)	C	tRNA-Leu-TTG	tRNA	(2)	84	1	3357202
617	5.5	0.0	0.0	chr6	27650928	27651000	(143154979)	C	tRNA-Val-GTY	tRNA	(3)	73	1	3357299
903	26.0	9.9	1.5	chr6	27651169	27651508	(143154471)	+	L1ME3A	LINE/L1	5643	6014	(159)	3357300
648	1.4	0.0	0.0	chr6	27688188	27688261	(143117718)	+	tRNA-Ile-ATT	tRNA	1	74	(3)	3357376
16	0.0	0.0	0.0	chr6	27688596	27688612	(143117367)	+	(A)n	Simple_repeat	1	17	(0)	3357377
2177	9.6	0.4	0.0	chr6	27693488	27693795	(143112184)	C	AluSx3	SINE/Alu	(0)	311	1	3357390
299	17.9	3.5	5.6	chr6	27693796	27693884	(143112095)	+	L1MC5	LINE/L1	9196	9282	(22)	3357391
724	1.2	0.0	0.0	chr6	28597340	28597421	(142208558)	C	tRNA-Ser-AGY	tRNA	(3)	82	1	3358882
461	14.5	0.0	2.4	chr6	28985714	28985796	(141820183)	+	AluJo	SINE/Alu	45	125	(187)	3359581
25	6.3	9.8	0.0	chr6	28985818	28985868	(141820111)	+	GA-rich	Low_complexity	1	56	(0)	3359582
195	33.0	11.5	2.9	chr6	30066560	30066662	(140739317)	+	L2b	LINE/L2	3220	3332	(43)	3361029
2430	8.0	0.6	0.3	chr6	30907508	30907819	(139898160)	C	AluSq2	SINE/Alu	(0)	313	1	3362482
659	23.9	2.3	0.6	chr6	41318581	41318748	(129487231)	+	MER5B	DNA/hAT-Charlie	7	177	(1)	3380943
29	0.0	0.0	0.0	chr6	42929620	42929646	(127876333)	+	(TGC)n	Simple_repeat	1	27	(0)	3384362
182	32.1	10.7	9.9	chr6	42929876	42930228	(127875751)	C	L2c	LINE/L2	(70)	3317	2962	3384363
33	3.1	0.0	0.0	chr6	44657033	44657065	(126148914)	+	(AC)n	Simple_repeat	1	33	(0)	3387574
13	31.9	1.7	0.0	chr6	52421070	52421127	(118384852)	+	(TCTTTCT)n	Simple_repeat	1	59	(0)	3398524
22	13.1	6.0	0.0	chr6	53484919	53484968	(117321011)	+	(TCTA)n	Simple_repeat	1	53	(0)	3400253
405	30.5	13.0	1.6	chr6	53485045	53485234	(117320745)	+	MIRb	SINE/MIR	42	256	(12)	3400254
18	0.0	0.0	0.0	chr6	53651400	53651419	(117154560)	+	(A)n	Simple_repeat	1	20	(0)	3400510
36	0.0	0.0	0.0	chr6	73653499	73653531	(97152448)	+	(CCCCCG)n	Simple_repeat	1	33	(0)	3423987
1819	8.1	0.4	0.8	chr6	77368679	77368928	(93437051)	C	LTR1A2	LTR/ERV1	(46)	791	543	3428725
1830	14.6	4.7	0.6	chr6	77368942	77369265	(93436714)	C	LTR1A2	LTR/ERV1	(499)	338	1	3428725
924	23.5	12.4	6.0	chr6	77369266	77369768	(93436211)	+	L1ME4b	LINE/L1	311	850	(42)	3428724
1433	24.4	2.7	1.4	chr6	78274003	78274371	(92531608)	C	MLT1A	LTR/ERVL-MaLR	(0)	374	1	3429772
318	29.2	8.7	3.1	chr6	78274411	78274604	(92531375)	C	MLT1K	LTR/ERVL-MaLR	(6)	589	384	3429773
2346	6.2	0.0	5.5	chr6	79817226	79817534	(90988445)	+	AluYm1	SINE/Alu	1	292	(19)	3431811
771	31.2	8.3	6.7	chr6	79817535	79817878	(90988101)	C	L2a	LINE/L2	(740)	2679	2334	3431809
440	22.3	2.6	0.4	chr6	94013622	94013736	(76792243)	+	MLT1D	LTR/ERVL-MaLR	449	625	(2)	3450817
30	0.0	0.0	0.0	chr6	94013756	94013783	(76792196)	+	(T)n	Simple_repeat	1	28	(0)	3450818
12017	12.4	5.7	2.5	chr6	119236728	119237363	(51568616)	+	Tigger1	DNA/TcMar-Tigger	1446	2071	(347)	3486334
2504	23.4	7.9	6.0	chr6	121075822	121076905	(49729074)	C	L1ME1	LINE/L1	(12)	6167	5057	3488530
267	31.8	1.1	0.0	chr6	125986855	125986942	(44819037)	C	L2c	LINE/L2	(38)	3349	3261	3495121
504	27.3	8.8	10.0	chr6	125987044	125987352	(44818627)	C	L2c	LINE/L2	(1)	3386	3082	3495122
12	25.5	3.8	1.8	chr6	130913776	130913828	(39892151)	+	A-rich	Low_complexity	1	55	(0)	3501540
439	31.6	5.7	0.0	chr6	130914037	130914169	(39891810)	+	MIRb	SINE/MIR	40	180	(88)	3501541
7402	13.1	3.6	0.5	chr6	131085119	131086336	(39719643)	+	L1PA13	LINE/L1	1103	2359	(4426)	3501810
2181	12.2	0.0	0.3	chr6	142231961	142232248	(28573731)	+	AluSx1	SINE/Alu	3	289	(23)	3518219
4971	10.2	13.7	1.0	chr6	142232257	142233031	(28572948)	+	L1P2	LINE/L1	5	877	(5307)	3518220
2230	12.5	0.0	0.7	chr6	143213489	143213816	(27592163)	C	AluSx1	SINE/Alu	(0)	312	1	3519542
642	12.0	1.1	0.0	chr6	148363312	148363403	(22442576)	C	AluJb	SINE/Alu	(181)	131	39	3526805
2397	7.2	0.0	0.3	chr6	148363407	148363699	(22442280)	C	AluSg7	SINE/Alu	(17)	292	1	3526806
2561	5.0	0.0	0.7	chr6	151334623	151334922	(19471057)	C	AluY	SINE/Alu	(13)	298	1	3531813
19	8.3	0.0	0.0	chr6	154510937	154510962	(16295017)	+	(A)n	Simple_repeat	1	26	(0)	3536517
197	18.2	4.3	0.0	chr6	156776763	156776806	(14029173)	C	L2b	LINE/L2	(3)	3372	3327	3539991
714	10.4	1.0	0.0	chr6	161329709	161329804	(9476175)	+	MER4A	LTR/ERV1	568	664	(0)	3546516
3858	16.2	13.5	8.2	chr6	161329808	161330851	(9475128)	+	MER4-int	LTR/ERV1	1	2010	(3936)	3546516
186	34.2	6.6	9.6	chr6	163450882	163451101	(7354878)	+	L3	LINE/CR1	2914	3126	(973)	3549469
13	26.8	2.2	0.0	chr6	170584448	170584492	(221487)	+	(CCCG)n	Simple_repeat	1	46	(0)	3557615
2012	14.3	0.3	2.3	chr7	4643037	4643336	(154702637)	C	AluJb	SINE/Alu	(17)	295	2	3565273
834	14.1	3.0	0.0	chr7	4643362	4643489	(154702484)	C	AluJr	SINE/Alu	(179)	133	2	3565274
1272	15.4	10.8	5.2	chr7	4643502	4643725	(154702248)	C	Tigger3a	DNA/TcMar-Tigger	(0)	348	98	3565275
23	24.4	3.8	1.2	chr7	7970357	7970436	(151375537)	+	(TCCCTC)n	Simple_repeat	1	83	(0)	3571877
3133	14.2	3.3	2.3	chr7	13311900	13312688	(146033285)	+	MER41-int	LTR/ERV1	3342	4143	(3673)	3578584
1953	14.8	0.3	1.6	chr7	13312689	13312991	(146032982)	+	AluSz	SINE/Alu	2	300	(12)	3578585
1300	11.7	4.6	8.2	chr7	13312992	13313126	(146032847)	+	MER41-int	LTR/ERV1	4043	4173	(3364)	3578584
216	31.2	3.8	0.0	chr7	30594237	30594313	(128751660)	+	L2b	LINE/L2	3069	3148	(227)	3603359
327	32.8	2.5	0.0	chr7	30594386	30594501	(128751472)	+	MIR3	SINE/MIR	83	201	(7)	3603360
13	7.1	6.2	2.9	chr7	30594954	30594985	(128750988)	+	(TGCTGC)n	Simple_repeat	1	34	(0)	3603361
224	34.9	6.8	7.3	chr7	36127037	36127200	(123218773)	C	L3	LINE/CR1	(23)	4076	3914	3611782
1373	21.6	18.2	1.6	chr7	36127524	36127957	(123218016)	C	Charlie1b	DNA/hAT-Charlie	(0)	523	2	3611783
489	25.4	14.5	1.1	chr7	36638084	36638262	(122707711)	C	MIRb	SINE/MIR	(20)	248	42	3612606
1644	30.1	11.9	2.9	chr7	37359788	37360788	(121985185)	+	L4_A_Mam	LINE/RTE-X	3216	4318	(672)	3613618
239	32.6	4.5	7.2	chr7	38177675	38177813	(121168160)	C	L2b	LINE/L2	(127)	3248	3114	3614738
31	18.7	4.1	3.9	chr7	44847977	44848074	(114497899)	+	(CGC)n	Simple_repeat	1	102	(0)	3625016
94	10.7	1.1	1.1	chr7	57495470	57495644	(101850329)	+	(GGAAT)n	Simple_repeat	1	177	(0)	3642547
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
1796	15.5	5.2	0.7	chr7	75739994	75740290	(83605683)	C	AluJr	SINE/Alu	(0)	312	2	3670392
32	9.7	1.7	1.7	chr7	78771117	78771174	(80574799)	+	(TC)n	Simple_repeat	1	59	(0)	3675902
20	22.9	1.8	0.0	chr7	87875963	87876018	(71469955)	+	(GGCTCC)n	Simple_repeat	1	57	(0)	3687770
19	28.2	1.6	7.2	chr7	87876335	87876457	(71469516)	+	G-rich	Low_complexity	1	125	(0)	3687771
31	0.0	0.0	0.0	chr7	106101439	106101467	(53244506)	+	(C)n	Simple_repeat	1	29	(0)	3717099
1411	17.7	16.5	1.6	chr7	106781847	106782150	(52563823)	C	MLT2B1	LTR/ERVL	(0)	520	163	3718062
443	27.2	5.0	0.0	chr7	135708412	135708525	(23637448)	C	MIRb	SINE/MIR	(5)	263	144	3759442
219	22.9	0.0	0.0	chr7	138738353	138738400	(20607573)	C	L2	LINE/L2	(799)	2620	2573	3764213
2273	8.1	0.7	0.7	chr7	140493347	140493643	(18852330)	+	AluSp	SINE/Alu	7	303	(10)	3767591
371	28.8	12.0	2.9	chr7	144835294	144835497	(14510476)	C	MIRb	SINE/MIR	(23)	245	21	3773750
2537	6.4	0.0	0.3	chr7	144836403	144836699	(14509274)	+	AluSx3	SINE/Alu	1	296	(15)	3773751
3332	26.1	10.4	3.0	chr7	148856029	148857437	(10488536)	+	L1MC3	LINE/L1	6137	7661	(124)	3779479
15	0.0	0.0	0.0	chr7	149239672	149239690	(10106283)	+	(CGG)n	Simple_repeat	1	19	(0)	3780360
2211	8.8	3.6	0.0	chr7	151314821	151315114	(8030859)	+	AluSz	SINE/Alu	1	305	(7)	3783231
1245	25.4	14.2	2.4	chr7	151315291	151315915	(8030058)	C	Charlie2b	DNA/hAT-Charlie	(41)	2741	2031	3783232
1234	23.3	5.9	6.5	chr7	151968705	151969392	(7376581)	C	L1M3	LINE/L1	(595)	5584	4932	3784340
2426	20.3	3.9	7.0	chr7	151969393	151969798	(7376175)	C	LTR71B	LTR/ERV1	(0)	610	199	3784341
2439	9.8	0.3	0.0	chr7	156888773	156889079	(2456894)	+	AluSx	SINE/Alu	1	308	(4)	3791492
1495	15.9	11.3	0.0	chr7	156889080	156889393	(2456580)	+	L1MB4	LINE/L1	5827	6180	(0)	3791489
435	28.9	12.2	5.4	chr7	156889748	156889763	(2456210)	+	L1ME3A	LINE/L1	4782	4795	(1351)	3791493
1403	15.4	2.3	7.0	chr7	156889764	156890035	(2455938)	+	AluJb	SINE/Alu	52	310	(2)	3791494
12	17.6	0.0	5.6	chr7	157010779	157010814	(2335159)	+	(CCGCC)n	Simple_repeat	1	36	(0)	3791706
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
303	28.4	0.0	3.3	chr7	158821388	158821478	(524495)	C	L4_C_Mam	LINE/RTE-X	(189)	4949	4862	3793746
32	7.1	1.5	4.5	chr8	37785124	37785188	(107353448)	+	(ACAGAT)n	Simple_repeat	1	66	(0)	3850962
22	8.6	2.6	0.0	chr8	37916540	37916577	(107222059)	+	(CTTTT)n	Simple_repeat	1	39	(0)	3851210
11720	18.4	4.9	2.6	chr8	41389163	41390174	(103748462)	+	L1MC3	LINE/L1	5823	6861	(924)	3856894
1153	18.1	0.9	0.6	chr8	46057917	46073072	(99065564)	+	ALR/Alpha	Satellite/centr	1	15210	(0)	3860786
2176	17.7	7.8	1.9	chr8	55580245	55580716	(89557920)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	4	3872565
19	3.0	5.6	2.6	chr8	56993906	56993941	(88144695)	+	(GGGCGA)n	Simple_repeat	1	38	(0)	3874704
20	20.9	1.2	7.2	chr8	56993942	56993985	(88144651)	+	G-rich	Low_complexity	3	83	(0)	3874705
1574	27.8	4.4	3.6	chr8	57205915	57206586	(87932050)	C	MER50	LTR/ERV1	(29)	705	28	3874990
2155	21.6	10.2	2.4	chr8	57209256	57210098	(87928538)	C	MER50-int	LTR/ERV1	(5568)	1637	729	3874991
1080	24.1	1.3	2.5	chr8	57210109	57210427	(87928209)	C	MER50	LTR/ERV1	(134)	600	286	3874991
828	29.3	5.5	3.9	chr8	57210498	57210965	(87927671)	C	MER50	LTR/ERV1	(231)	503	28	3874994
275	35.0	4.2	0.0	chr8	60734716	60734898	(84403738)	C	L2	LINE/L2	(435)	2984	2794	3879667
236	30.8	11.7	3.2	chr8	60735104	60735197	(84403439)	+	L2b	LINE/L2	3257	3385	(2)	3879668
6204	11.3	4.0	0.8	chr8	63145648	63146610	(81992026)	C	HERVH48-int	LTR/ERV1	(5215)	1439	445	3882802
1308	25.2	7.9	5.9	chr8	65292105	65292770	(79845866)	+	L1ME3D	LINE/L1	5551	6231	(11)	3885574
272	32.1	6.9	10.0	chr8	65292774	65292953	(79845683)	C	MER5A	DNA/hAT-Charlie	(15)	174	1	3885575
233	23.3	0.0	0.0	chr8	65293005	65293064	(79845572)	C	Charlie15b	DNA/hAT-Charlie	(35)	1026	967	3885576
543	0.0	0.0	21.5	chr8	66113367	66113459	(79025177)	+	tRNA-Tyr-TAC	tRNA	1	73	(3)	3886877
15	4.7	0.0	0.0	chr8	67029054	67029075	(78109561)	+	(TAA)n	Simple_repeat	1	22	(0)	3888572
402	33.3	6.4	8.5	chr8	67029119	67029436	(78109200)	+	L2c	LINE/L2	3075	3385	(2)	3888573
27	28.0	1.3	0.0	chr8	70245503	70245579	(74893057)	+	(TC)n	Simple_repeat	1	78	(0)	3893490
11	14.9	4.9	4.7	chr8	72574109	72574149	(72564487)	+	A-rich	Low_complexity	1	43	(0)	3896634
1682	19.8	5.9	0.7	chr8	73860853	73861140	(71277496)	+	AluJr4	SINE/Alu	1	304	(8)	3898673
832	16.9	2.4	0.0	chr8	73861484	73861607	(71277029)	C	AluJr	SINE/Alu	(185)	127	1	3898674
425	25.6	9.3	0.0	chr8	80085334	80085470	(65053166)	+	Helitron3Na_Mam	RC/Helitron	5	155	(331)	3906984
526	24.2	12.4	2.3	chr8	80085531	80085854	(65052782)	+	L1MC4	LINE/L1	6898	7319	(723)	3906985
18	0.0	0.0	0.0	chr8	84182855	84182877	(60955759)	+	(AAAC)n	Simple_repeat	1	23	(0)	3912801
35	18.9	4.8	4.5	chr8	99730679	99730804	(45407832)	+	(AGGTAC)n	Simple_repeat	1	132	(0)	3935608
307	34.3	4.5	5.2	chr8	99730918	99731166	(45407470)	C	L2c	LINE/L2	(208)	3179	2933	3935609
14	29.1	0.0	3.5	chr8	100310098	100310155	(44828481)	+	(CCT)n	Simple_repeat	1	58	(0)	3936538
1580	10.3	0.0	0.0	chr8	101499796	101499998	(43638638)	+	AluSg	SINE/Alu	1	203	(107)	3938870
598	13.4	0.0	0.0	chr8	101500002	101500083	(43638553)	+	AluSc	SINE/Alu	207	288	(21)	3938871
24	17.9	2.9	0.9	chr8	101500084	101500142	(43638494)	+	A-rich	Low_complexity	1	60	(0)	3938872
230	28.6	3.5	0.0	chr8	108860164	108860247	(36278389)	C	MamRep605	LTR?	(327)	522	436	3949984
435	28.0	10.3	1.1	chr8	123918347	123918523	(21220113)	C	L1ME4a	LINE/L1	(312)	5812	5618	3972774
313	27.8	15.0	4.2	chr8	123918855	123919233	(21219403)	C	L2c	LINE/L2	(5)	3382	2956	3972776
16	4.5	0.0	0.0	chr8	134832489	134832511	(10306125)	+	(CACG)n	Simple_repeat	1	23	(0)	3992946
501	25.7	11.8	2.4	chr8	134832831	134833037	(10305599)	+	MIRb	SINE/MIR	39	267	(1)	3992947
258	27.7	5.9	7.4	chr8	134833051	134833171	(10305465)	C	MIRb	SINE/MIR	(115)	153	35	3992948
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
1387	25.7	7.0	3.4	chr8	144125268	144125631	(1013005)	+	L1MC4	LINE/L1	7167	7535	(507)	4007142
267	30.2	11.8	3.2	chr9	3191438	3191591	(135203126)	+	MIRb	SINE/MIR	21	189	(79)	4013269
200	28.6	1.4	2.8	chr9	3191585	3191656	(135203061)	C	Tigger19a	DNA/TcMar-Tigger	(122)	201	131	4013270
211	15.3	0.0	0.0	chr9	18976929	18976967	(119417750)	+	MIRb	SINE/MIR	195	237	(31)	4035338
1628	10.6	2.1	0.8	chr9	35657504	35657740	(102736977)	+	AluJb	SINE/Alu	1	240	(72)	4059251
372	36.0	6.6	0.0	chr9	37904653	37904877	(100489840)	+	MIRc	SINE/MIR	19	259	(9)	4063618
296	22.0	5.7	2.5	chr9	41229379	41230391	(97164326)	+	(TG)n	Simple_repeat	1	1071	(0)	4068370
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
3051	15.5	2.6	0.5	chr9	62838347	62838981	(75555736)	+	TAR1	Satellite/telo	1420	2068	(43)	4073704
235	23.8	4.5	3.8	chr9	63823016	63823908	(74570809)	+	(CA)n	Simple_repeat	1	933	(0)	4074777
26	20.9	1.8	0.0	chr9	79257119	79257174	(59137543)	+	(CT)n	Simple_repeat	1	57	(0)	4096976
19	7.2	0.0	0.0	chr9	79571362	79571390	(58823327)	+	(CCA)n	Simple_repeat	1	29	(0)	4097445
14	10.8	3.1	3.0	chr9	79571404	79571435	(58823282)	+	(GCA)n	Simple_repeat	1	33	(0)	4097446
341	29.3	7.7	0.0	chr9	83060177	83060367	(55334350)	+	Charlie16a	DNA/hAT-Charlie	61	267	(75)	4102317
275	28.7	5.1	5.1	chr9	83060433	83060567	(55334150)	+	L2c	LINE/L2	3242	3371	(4)	4102318
14	18.5	0.0	0.0	chr9	85941188	85941218	(52453499)	+	(GGC)n	Simple_repeat	1	31	(0)	4107037
364	30.2	8.8	4.4	chr9	89549059	89549352	(48845365)	C	L1ME3B	LINE/L1	(0)	6242	5935	4112640
2216	27.4	7.4	3.7	chr9	89549342	89550529	(48844188)	C	L1ME3B	LINE/L1	(941)	5205	3952	4112640
2617	14.2	0.7	4.0	chr9	91989899	91990346	(46404371)	C	Tigger2a	DNA/TcMar-Tigger	(0)	434	2	4116039
17	5.0	0.0	0.0	chr9	91990385	91990405	(46404312)	+	(AT)n	Simple_repeat	1	21	(0)	4116040
436	27.1	10.4	10.2	chr9	91990591	91990944	(46403773)	C	MLT1L	LTR/ERVL-MaLR	(45)	565	111	4116041
4885	20.3	6.2	3.0	chr9	92013151	92014844	(46379873)	+	L1ME3C	LINE/L1	2034	3774	(2763)	4116085
4042	8.7	1.9	2.1	chr9	109103420	109103807	(29290910)	+	L1MA2	LINE/L1	5685	6068	(236)	4143800
2285	10.6	0.3	0.7	chr9	109103808	109104109	(29290608)	+	AluSx1	SINE/Alu	5	305	(7)	4143801
193	25.4	1.5	5.6	chr9	122912997	122913067	(15481650)	+	L2b	LINE/L2	3303	3370	(5)	4169766
19	4.0	0.0	0.0	chr9	122913184	122913209	(15481508)	+	(TCC)n	Simple_repeat	1	26	(0)	4169767
2559	7.1	0.0	0.0	chr9	122913513	122913806	(15480911)	C	AluSq2	SINE/Alu	(19)	294	1	4169768
16	0.0	0.0	0.0	chr9	125473079	125473096	(12921621)	+	(T)n	Simple_repeat	1	18	(0)	4174737
1999	11.8	7.7	0.0	chr9	129587248	129587536	(8807181)	+	AluSq	SINE/Alu	1	313	(0)	4183199
2361	9.0	0.3	0.0	chr9	129587826	129588125	(8806592)	+	AluSp	SINE/Alu	1	301	(12)	4183200
3036	22.0	7.9	2.3	chrX	12986747	12987575	(143053320)	C	L1MC4	LINE/L1	(14)	8028	7162	4380432
2311	11.8	0.0	0.0	chrX	12987576	12987879	(143053016)	C	AluSx	SINE/Alu	(8)	304	1	4380433
20	3.9	0.0	0.0	chrX	18424724	18424750	(137616145)	+	(TGC)n	Simple_repeat	1	27	(0)	4389523
28	17.3	1.9	0.0	chrX	18424846	18424898	(137615997)	+	(TG)n	Simple_repeat	1	54	(0)	4389524
1308	28.8	10.8	2.1	chrX	37287800	37288367	(118752528)	C	LTR87	LTR/ERVL?	(1)	623	1	4417217
261	28.1	6.3	3.0	chrX	44306445	44306613	(111734282)	C	MLT1L	LTR/ERVL-MaLR	(337)	175	1	4428610
1592	22.2	3.1	6.0	chrX	44306751	44307220	(111733675)	C	LTR16A1	LTR/ERVL	(0)	456	1	4428612
1801	26.2	8.7	7.2	chrX	53071275	53071735	(102969160)	C	MER20B	DNA/hAT-Charlie	(265)	518	6	4442993
579	28.2	3.6	7.8	chrX	53374986	53375216	(102665679)	C	MLT1M	LTR/ERVL-MaLR	(451)	221	1	4443603
19	25.4	5.3	0.0	chrX	54808161	54808235	(101232660)	+	(AGTAGGA)n	Simple_repeat	1	79	(0)	4446411
14	27.3	5.3	1.2	chrX	54808223	54808298	(101232597)	+	G-rich	Low_complexity	1	80	(0)	4446412
568	21.8	9.2	2.9	chrX	55146418	55146597	(100894298)	C	MIRc	SINE/MIR	(39)	229	32	4446822
921	17.1	1.2	0.0	chrX	74178921	74179078	(81861817)	+	HERVK3-int	LTR/ERVK	2330	2489	(4348)	4465236
265	28.4	7.8	4.0	chrX	107893874	107893972	(48146923)	C	L2c	LINE/L2	(1)	3386	3284	4505004
421	26.1	12.5	11.8	chrX	107894001	107894258	(48146637)	+	L2c	LINE/L2	3117	3361	(14)	4505005
15	29.7	3.7	0.0	chrX	120245553	120245606	(35795289)	+	(TA)n	Simple_repeat	1	56	(0)	4522642
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638