454	28.0	4.6	0.8	chr1	10835511	10835698	(238120724)	C	MIR	SINE/MIR	(43)	225	36	16435
15	29.2	0.0	3.4	chr1	15617497	15617555	(233338867)	+	G-rich	Low_complexity	1	59	(0)	25685
16	10.4	3.2	0.0	chr1	15617534	15617564	(233338858)	+	(GAGC)n	Simple_repeat	1	32	(0)	25686
21	13.9	0.0	2.3	chr1	15617628	15617670	(233338752)	+	G-rich	Low_complexity	1	43	(0)	25687
307	30.3	2.9	6.8	chr1	16440144	16440223	(232516199)	+	LTR103_Mam	LTR/ERV1?	373	453	(22)	27496
12	15.8	2.6	5.0	chr1	16440347	16440385	(232516037)	+	(AGGCAG)n	Simple_repeat	1	40	(0)	27498
19	20.1	3.3	3.2	chr1	22053256	22053316	(226903106)	+	(GGCGG)n	Simple_repeat	1	63	(0)	39318
18	20.9	2.2	8.6	chr1	22053317	22053344	(226903078)	+	(GCG)n	Simple_repeat	3	93	(0)	39319
549	27.6	5.0	0.0	chr1	27155433	27155584	(221800838)	+	MIR	SINE/MIR	72	231	(31)	51053
207	31.0	5.8	5.8	chr1	27155583	27155652	(221800770)	C	MIR	SINE/MIR	(106)	156	90	51054
1834	19.5	9.8	1.4	chr1	27155653	27155909	(221800513)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	187	51055
2384	9.4	0.0	0.0	chr1	27155910	27156216	(221800206)	C	AluSq	SINE/Alu	(6)	307	1	51056
17	5.2	0.0	14.6	chr1	27725927	27725981	(221230441)	+	(GCCC)n	Simple_repeat	1	55	(0)	52395
13	16.8	7.5	0.0	chr1	27726039	27726078	(221230344)	+	G-rich	Low_complexity	1	43	(0)	52396
1943	17.7	0.0	0.0	chr1	27929937	27930241	(221026181)	+	AluJo	SINE/Alu	1	305	(7)	52879
2170	9.4	2.0	0.0	chr1	37554443	37554739	(211401683)	+	AluSz6	SINE/Alu	1	303	(9)	72993
519	31.4	4.5	16.7	chr1	54341498	54341975	(194614447)	C	L2b	LINE/L2	(0)	3375	2959	104894
14	5.8	10.5	2.4	chr1	58816594	58816631	(190139791)	+	(CAGTCCT)n	Simple_repeat	1	42	(0)	113581
14	14.6	0.0	3.1	chr1	77683302	77683333	(171273089)	+	(CGC)n	Simple_repeat	1	32	(0)	143293
18	24.2	0.0	3.5	chr1	77683479	77683535	(171272887)	+	(GGC)n	Simple_repeat	1	57	(0)	143294
3027	1.0	0.0	0.0	chr1	143842917	143843219	(105113203)	C	AluYa5	SINE/Alu	(8)	303	1	208416
2597	8.4	5.0	1.9	chr1	144101293	144106919	(104849503)	+	(TGGCTGGCT)n	Simple_repeat	1	5911	(0)	208844
620	20.9	6.1	1.9	chr1	148263477	148263632	(100692790)	+	U1	snRNA	2	164	(1)	215389
20	21.6	5.5	2.6	chr1	156591735	156591867	(92364555)	+	G-rich	Low_complexity	1	136	(0)	230402
12	15.1	0.0	9.1	chr1	165630442	165630485	(83325937)	+	(CCCCCG)n	Simple_repeat	1	44	(0)	243993
28372	2.1	0.1	0.0	chr1	168348863	168354879	(80601543)	C	L1PA2	LINE/L1	(0)	6155	131	248249
2235	10.7	1.4	0.0	chr1	170554123	170554412	(78402010)	C	AluSx1	SINE/Alu	(18)	294	1	251467
3789	24.7	8.9	5.8	chr1	182910140	182910881	(66045541)	+	L1MB5	LINE/L1	47	834	(6683)	270252
13	15.1	5.1	2.4	chr1	183471444	183471500	(65484922)	+	(CGCC)n	Simple_repeat	1	58	(0)	271187
1756	18.8	2.1	5.5	chr1	185262556	185262775	(63693647)	C	MLT1B	LTR/ERVL-MaLR	(4)	386	180	273982
2138	12.9	0.6	1.0	chr1	185262776	185263086	(63693336)	C	AluJb	SINE/Alu	(2)	310	1	273983
21	20.9	2.8	4.0	chr1	193105439	193105510	(55850912)	+	(CCCGC)n	Simple_repeat	1	74	(0)	284362
1293	17.3	2.5	0.5	chr1	200487655	200487851	(48468571)	+	AluJb	SINE/Alu	87	287	(25)	294354
16	5.2	0.0	0.0	chr1	200487852	200487871	(48468551)	+	(GA)n	Simple_repeat	1	20	(0)	294355
28	0.0	0.0	0.0	chr1	200487873	200487899	(48468523)	+	(G)n	Simple_repeat	1	27	(0)	294356
39	2.7	0.0	0.0	chr1	200487903	200487940	(48468482)	+	(GA)n	Simple_repeat	1	38	(0)	294357
479	27.2	12.9	5.7	chr1	200487956	200488023	(48468399)	C	L2a	LINE/L2	(142)	3284	3217	294352
13	22.0	2.2	2.2	chr1	212665501	212665545	(36290877)	+	(CTCTTCC)n	Simple_repeat	1	46	(0)	314923
14	12.2	0.0	0.0	chr1	212665650	212665676	(36290746)	+	(CTCCC)n	Simple_repeat	1	27	(0)	314924
13	0.0	0.0	4.8	chr1	215567283	215567303	(33389119)	+	(TCC)n	Simple_repeat	1	21	(0)	319244
12	15.8	0.0	3.3	chr1	215567376	215567405	(33389017)	+	(GGC)n	Simple_repeat	1	30	(0)	319245
18	20.5	1.9	3.6	chr1	215567559	215567612	(33388810)	+	(CCG)n	Simple_repeat	1	55	(0)	319246
31	9.2	0.0	0.0	chr1	220528033	220528079	(28428343)	+	(GGA)n	Simple_repeat	1	47	(0)	326370
13	13.2	6.7	4.2	chr1	220528171	220528215	(28428207)	+	(CGCGC)n	Simple_repeat	1	48	(0)	326371
15	23.4	2.8	5.4	chr1	220528499	220528570	(28427852)	+	(CCGCCTC)n	Simple_repeat	1	74	(0)	326372
1987	14.1	1.1	1.1	chr1	224011691	224016553	(24939869)	+	(AATGG)n	Simple_repeat	1	4914	(0)	331634
23	21.6	0.0	0.0	chr1	224616317	224616327	(24340095)	+	(GCAGCG)n	Simple_repeat	1	21	(42)	332883
800	22.9	3.4	3.8	chr1	225809840	225809942	(23146480)	C	MER5C	DNA/hAT-Charlie	(128)	185	79	334623
22	24.8	1.3	2.6	chr1	227318505	227318579	(21637843)	+	(CCCCCG)n	Simple_repeat	1	76	(0)	337284
40	29.6	0.0	0.0	chr1	228635559	228635667	(20320755)	+	(CA)n	Simple_repeat	1	109	(0)	338951
63	31.5	1.7	0.8	chr1	228635679	228635919	(20320503)	+	GA-rich	Low_complexity	1	245	(0)	338952
1943	20.0	2.6	2.3	chr1	229390062	229390450	(19565972)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	340178
329	29.6	2.9	0.7	chr1	230690500	230690635	(18265787)	+	Tigger16a	DNA/TcMar-Tigger	446	584	(373)	342254
2014	13.5	0.5	13.3	chr1	230871831	230872065	(18084357)	+	MSTC	LTR/ERVL-MaLR	1	190	(238)	342534
2237	9.6	0.0	0.0	chr1	230872066	230872382	(18084040)	C	AluSc8	SINE/Alu	(0)	311	1	342535
1898	19.0	7.5	3.4	chr1	231179041	231179487	(17776935)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	1	343048
1867	17.2	2.3	4.8	chr1	234666748	234667143	(14289279)	+	MLT1B	LTR/ERVL-MaLR	1	386	(4)	348251
2937	7.3	0.0	0.0	chr1	236096779	236097148	(12859274)	C	LTR10A	LTR/ERV1	(62)	547	178	350992
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
1610	17.3	9.5	2.2	chr1	237580656	237581016	(11375406)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	353551
2176	7.2	0.7	0.0	chr1	244833995	244834271	(4122151)	C	AluSq4	SINE/Alu	(31)	280	2	364891
688	18.8	8.8	1.7	chr10	11859724	11859902	(121937520)	C	L1MB8	LINE/L1	(5)	6173	5981	387658
2094	13.9	3.6	5.1	chr10	17005776	17006170	(116791252)	+	MLT1B	LTR/ERVL-MaLR	1	389	(1)	396691
532	35.4	10.4	3.3	chr10	17006171	17006229	(116791193)	+	L2c	LINE/L2	3328	3386	(1)	396688
11	20.1	9.1	2.8	chr10	35127069	35127134	(98670288)	+	(GCCGGCT)n	Simple_repeat	1	72	(0)	426040
12	22.1	3.9	3.8	chr10	43397129	43397179	(90400243)	+	G-rich	Low_complexity	1	53	(0)	433410
1796	13.6	5.7	11.8	chr10	45490180	45490595	(88306827)	+	MLT1B	LTR/ERVL-MaLR	1	389	(1)	436114
872	19.3	0.0	0.7	chr10	45490765	45490904	(88306518)	C	AluJb	SINE/Alu	(40)	272	134	436115
16	27.6	0.0	1.8	chr10	88880176	88880230	(44917192)	+	(CAGAGG)n	Simple_repeat	1	55	(0)	503504
7519	3.7	0.9	1.0	chr10	94114761	94115746	(39681676)	C	L1PA5	LINE/L1	(1)	6153	5171	512409
568	25.5	16.8	0.0	chr10	120465796	120466058	(13331364)	C	L1ME3D	LINE/L1	(307)	5935	5620	555692
742	23.0	20.1	0.3	chr10	120466267	120466554	(13330868)	+	L1ME3A	LINE/L1	5621	5979	(194)	555693
2077	27.4	6.5	2.7	chr10	125885745	125886441	(7910981)	+	L2a	LINE/L2	2614	3340	(86)	564143
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
2260	8.4	0.3	0.3	chr11	449670	449956	(134636666)	+	AluSg	SINE/Alu	3	289	(21)	573405
2543	6.6	1.9	0.0	chr11	912563	912867	(134173755)	+	AluY	SINE/Alu	1	311	(0)	574082
312	20.9	13.3	0.0	chr11	10934289	10934379	(124152243)	+	MamRep1879	DNA/hAT-Tip100?	13	117	(99)	588409
32	0.0	0.0	0.0	chr11	10934472	10934501	(124152121)	+	(T)n	Simple_repeat	1	30	(0)	588410
259	12.1	2.8	3.5	chr11	11246866	11247010	(123839612)	C	HERV17-int	LTR/ERV1	(7779)	847	704	588885
84	25.4	0.5	0.9	chr11	11247018	11247230	(123839392)	+	(TC)n	Simple_repeat	1	214	(0)	588886
13	30.2	0.0	6.9	chr11	14644665	14644751	(120441871)	+	(TGGTGC)n	Simple_repeat	1	87	(0)	594298
2124	9.5	3.2	1.0	chr11	61391207	61391252	(73695370)	+	AluSq2	SINE/Alu	1	47	(266)	660081
32	0.0	0.0	0.0	chr11	61391253	61391282	(73695340)	+	(G)n	Simple_repeat	1	30	(0)	660082
2124	9.5	3.2	1.0	chr11	61391283	61391540	(73695082)	+	AluSq2	SINE/Alu	48	311	(2)	660081
1288	15.3	1.3	12.1	chr11	62455719	62456057	(72630565)	+	AluSq	SINE/Alu	2	303	(10)	662115
1008	16.6	2.5	1.5	chr11	62456087	62456288	(72630334)	+	MLT1B	LTR/ERVL-MaLR	187	390	(0)	662116
562	20.7	8.9	4.7	chr11	62456365	62456536	(72630086)	C	MIRb	SINE/MIR	(34)	234	55	662117
2161	13.3	1.0	0.0	chr11	66896078	66896378	(68190244)	C	AluSz	SINE/Alu	(8)	304	1	670438
2067	24.2	11.6	3.6	chr11	66896379	66896517	(68190105)	+	HAL1	LINE/L1	1587	1744	(763)	670436
1069	23.6	13.1	5.9	chr11	70371122	70371431	(64715191)	C	L1MD	LINE/L1	(3227)	2919	2548	676745
616	22.2	3.5	4.0	chr11	70371541	70371742	(64714880)	C	L1M4	LINE/L1	(3463)	2683	2483	676741
1480	16.9	4.1	0.7	chr11	76770088	76770368	(58316254)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	100	688647
2383	13.7	2.6	0.3	chr11	79187594	79187974	(55898648)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	693426
26226	2.5	0.4	0.0	chr11	94232525	94238528	(40848094)	C	L1PA2	LINE/L1	(3)	6152	124	716864
2858	14.5	1.1	2.7	chr11	112622191	112622664	(22463958)	+	MLT1C	LTR/ERVL-MaLR	2	467	(0)	743409
210	38.1	4.3	1.5	chr11	112622665	112622789	(22463833)	C	L2a	LINE/L2	(331)	3095	2964	743408
1879	16.5	4.9	6.8	chr11	114270498	114270776	(20815846)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	104	746008
2087	13.0	2.9	0.7	chr11	114270777	114271075	(20815547)	C	AluSz	SINE/Alu	(5)	307	2	746009
309	27.6	5.4	4.5	chr11	130484289	130484377	(4602245)	+	L1ME3G	LINE/L1	492	577	(347)	771993
2504	12.8	2.0	0.3	chr11	130484378	130484760	(4601862)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	771994
548	2.3	1.2	1.4	chr12	10001	10585	(133264724)	+	(CTAACC)n	Simple_repeat	1	592	(0)	778084
1569	16.9	11.8	5.8	chr12	3584039	3584403	(129690906)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	784061
1822	13.7	8.9	4.4	chr12	6944852	6945194	(126330115)	C	Tigger4b	DNA/TcMar-Tigger	(1)	360	1	789679
59	3.3	0.0	0.0	chr12	13000193	13000254	(120275055)	+	(GGCGGCAG)n	Simple_repeat	1	62	(0)	799225
15	12.1	3.9	7.4	chr12	13000268	13000319	(120274990)	+	(GGCAGA)n	Simple_repeat	1	54	(0)	799226
241	31.9	0.8	0.8	chr12	17097512	17097631	(116177678)	C	MLT1J-int	LTR/ERVL-MaLR	(653)	734	615	805100
1693	16.9	1.0	10.3	chr12	69951183	69951423	(63323886)	C	MLT1B	LTR/ERVL-MaLR	(5)	500	183	880141
2443	8.6	0.3	0.3	chr12	69951424	69951726	(63323583)	C	AluSp	SINE/Alu	(9)	304	2	880142
13	0.0	5.0	0.0	chr12	70366024	70366043	(62909266)	+	(TTA)n	Simple_repeat	1	21	(0)	880780
1730	20.2	7.0	2.4	chr12	121608634	121609054	(11666255)	+	MLT1D	LTR/ERVL-MaLR	1	442	(63)	969808
38	2.8	0.0	0.0	chr12	121609055	121609091	(11666218)	+	(TG)n	Simple_repeat	1	37	(0)	969809
429	22.8	8.0	5.3	chr12	122964342	122964512	(10310797)	C	MIR1_Amn	SINE/MIR	(39)	191	16	973064
1747	20.2	0.8	8.5	chr12	130900223	130900645	(2374664)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	987439
510	24.2	0.0	11.0	chr12	131310041	131310240	(1965069)	C	L1MA4	LINE/L1	(8)	6292	6115	987985
298	29.1	11.7	0.0	chr12	131858400	131858588	(1416721)	C	L2a	LINE/L2	(528)	2891	2678	988703
2187	9.3	6.1	0.0	chr13	27671809	27672099	(86692229)	+	AluSp	SINE/Alu	2	311	(2)	1005330
1906	17.1	1.3	9.4	chr13	27672100	27672340	(86691988)	+	MLT1B	LTR/ERVL-MaLR	174	390	(0)	1005329
212	18.2	14.5	0.0	chr13	27966415	27966496	(86397832)	C	MIRc	SINE/MIR	(119)	149	37	1005828
14	17.6	2.5	2.4	chr13	41457396	41457435	(72906893)	+	G-rich	Low_complexity	1	41	(0)	1025878
18	10.0	4.1	5.9	chr13	41457466	41457515	(72906813)	+	(GCCCCG)n	Simple_repeat	1	49	(0)	1025879
13	22.6	4.8	0.0	chr13	41457713	41457754	(72906574)	+	(GCC)n	Simple_repeat	1	44	(0)	1025880
205	25.4	11.9	3.1	chr13	41458007	41458136	(72906192)	+	MIRb	SINE/MIR	48	190	(78)	1025881
14	8.2	0.0	3.6	chr13	45418420	45418447	(68945881)	+	(GCCCC)n	Simple_repeat	1	28	(0)	1032247
581	25.1	21.7	6.3	chr13	61893320	61893591	(52470737)	+	MSTD	LTR/ERVL-MaLR	1	340	(56)	1055332
1888	12.1	0.0	0.0	chr13	61893592	61893839	(52470489)	C	AluSc5	SINE/Alu	(28)	281	34	1055333
1636	14.6	3.0	0.3	chr13	62020436	62020731	(52343597)	+	L1PA8	LINE/L1	5867	6170	(2)	1055501
1360	22.8	9.7	3.0	chr13	66174913	66175314	(48189014)	+	MLT1C	LTR/ERVL-MaLR	36	467	(0)	1060711
89	22.5	2.1	3.9	chr13	66811560	66811838	(47552490)	+	(TTCC)n	Simple_repeat	1	285	(0)	1061490
1904	17.2	4.8	1.9	chr13	71882355	71882721	(42481607)	C	MLT1B	LTR/ERVL-MaLR	(6)	384	7	1068036
20	16.2	0.0	2.3	chr13	75549747	75549789	(38814539)	+	(GGC)n	Simple_repeat	1	43	(0)	1073544
4050	12.5	5.0	6.2	chr13	76019414	76020206	(38344122)	C	LTR1	LTR/ERV1	(0)	783	1	1074206
16	4.3	0.0	3.9	chr13	77329420	77329445	(37034883)	+	(CTC)n	Simple_repeat	1	26	(0)	1076038
1486	23.1	10.9	5.7	chr13	84890617	84891099	(29473229)	+	L1MCa	LINE/L1	1541	2070	(4438)	1085814
1665	19.4	3.6	0.0	chr13	84891100	84891393	(29472935)	+	AluJb	SINE/Alu	2	306	(6)	1085815
1562	21.3	3.8	3.9	chr13	90377094	90377481	(23986847)	C	MLT1B	LTR/ERVL-MaLR	(4)	386	1	1092852
1883	21.7	4.1	1.8	chr13	98116290	98116739	(16247589)	+	MLT1C	LTR/ERVL-MaLR	7	467	(0)	1104110
12	12.8	5.6	2.6	chr13	98142495	98142530	(16221798)	+	G-rich	Low_complexity	1	38	(0)	1104172
14	14.3	8.3	1.9	chr13	98142728	98142775	(16221553)	+	(CCCGCTCT)n	Simple_repeat	1	52	(0)	1104173
17	10.8	7.5	0.0	chr13	98142939	98142978	(16221350)	+	(CGGAG)n	Simple_repeat	1	43	(0)	1104174
16	14.0	7.5	0.0	chr14	20343644	20343683	(86700035)	+	(GGC)n	Simple_repeat	1	43	(0)	1127888
330	22.6	4.1	2.1	chr14	20343795	20343889	(86699829)	C	MER46C	DNA/TcMar-Tigger	(241)	97	1	1127889
11	19.5	0.0	8.3	chr14	57865862	57865909	(49177809)	+	(CGGAGC)n	Simple_repeat	1	48	(0)	1181278
21	20.1	3.0	2.9	chr14	64465366	64465431	(42578287)	+	(CCCCG)n	Simple_repeat	1	68	(0)	1191351
2383	11.1	0.0	0.0	chr14	72691447	72691752	(34351966)	+	AluSc	SINE/Alu	1	306	(3)	1204637
1549	18.2	3.4	9.8	chr14	72691753	72691970	(34351748)	+	MLT1B	LTR/ERVL-MaLR	177	388	(2)	1204636
135	1.6	0.8	0.0	chr14	77269669	77269795	(29773923)	+	(TC)n	Simple_repeat	1	128	(0)	1213918
25	0.0	0.0	0.0	chr14	77269796	77269822	(29773896)	+	(C)n	Simple_repeat	1	27	(0)	1213919
529	28.8	2.5	2.5	chr14	77269823	77269979	(29773739)	C	MIR	SINE/MIR	(43)	219	63	1213920
19	21.1	0.0	0.0	chr14	81220554	81220591	(25823127)	+	A-rich	Low_complexity	1	38	(0)	1220298
16	19.1	0.0	4.3	chr14	81220592	81220599	(25823119)	+	(AACAA)n	Simple_repeat	1	46	(0)	1220299
16	9.6	2.7	5.3	chr14	81220663	81220699	(25823019)	+	GA-rich	Low_complexity	1	38	(0)	1220300
14	17.1	7.1	3.3	chr14	81220829	81220884	(25822834)	+	(CCGCTG)n	Simple_repeat	1	60	(0)	1220301
18	7.7	0.0	0.0	chr14	81220926	81220953	(25822765)	+	(GCC)n	Simple_repeat	1	28	(0)	1220302
31	0.0	0.0	0.0	chr14	99420948	99420976	(7622742)	+	(G)n	Simple_repeat	1	29	(0)	1250017
2251	6.7	4.8	1.1	chr15	20340242	20344102	(81647087)	+	(AGCCAGCCA)n	Simple_repeat	1	4048	(0)	1263201
12	24.0	4.5	0.0	chr15	56887288	56887331	(45103858)	+	(GCCGC)n	Simple_repeat	1	46	(0)	1317809
13	18.3	2.6	2.5	chr15	66386883	66386921	(35604268)	+	(TCCCC)n	Simple_repeat	1	40	(0)	1334597
12	12.2	3.7	0.0	chr15	66387261	66387287	(35603902)	+	(GCGCA)n	Simple_repeat	1	28	(0)	1334598
2354	10.8	0.3	1.3	chr15	66671974	66672288	(35318901)	+	AluSx1	SINE/Alu	1	312	(0)	1335221
1944	17.7	5.2	5.2	chr15	66672293	66672680	(35318509)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	3	1335222
386	29.0	3.9	0.8	chr15	75105368	75105492	(26885697)	C	MIR	SINE/MIR	(117)	145	17	1350189
810	24.5	6.2	0.0	chr15	78360120	78360331	(23630858)	C	MIR	SINE/MIR	(0)	262	37	1355720
30	3.5	0.0	0.0	chr15	81418939	81418968	(20572221)	+	(TC)n	Simple_repeat	1	30	(0)	1361255
1664	18.3	4.1	6.3	chr15	81418969	81419172	(20572017)	+	MLT1B	LTR/ERVL-MaLR	188	388	(2)	1361254
36	8.6	1.6	1.5	chr15	84143269	84143332	(17847857)	+	(GGCA)n	Simple_repeat	1	65	(0)	1365650
37	8.6	0.0	0.0	chr15	85858699	85858748	(16132441)	+	(GT)n	Simple_repeat	1	50	(0)	1368514
14	25.4	3.1	3.0	chr15	88546596	88546659	(13444530)	+	(GCCCCT)n	Simple_repeat	1	66	(0)	1372570
1813	18.9	1.9	3.8	chr15	94706384	94706751	(7284438)	+	MLT1A0	LTR/ERVL-MaLR	5	365	(0)	1383392
1846	16.6	0.0	10.4	chr15	99366090	99366442	(2624747)	C	MLT1B	LTR/ERVL-MaLR	(4)	386	77	1390029
15	15.3	0.0	5.0	chr15	101723942	101723981	(267208)	+	(GCAGG)n	Simple_repeat	1	40	(0)	1393180
17	3.6	0.0	6.2	chr15	101724553	101724584	(266605)	+	(GGGGC)n	Simple_repeat	1	32	(0)	1393181
26	0.0	0.0	0.0	chr15	101724604	101724628	(266561)	+	(GGGGC)n	Simple_repeat	1	25	(0)	1393181
293	19.4	4.0	0.0	chr16	1025186	1025257	(89313088)	C	MER2	DNA/TcMar-Tigger	(3)	342	268	1395420
464	31.2	4.2	0.5	chr16	1025755	1025960	(89312385)	C	MER2	DNA/TcMar-Tigger	(130)	215	2	1395420
198	25.0	6.4	7.4	chr16	1092180	1092274	(89246071)	+	L2b	LINE/L2	3263	3356	(19)	1395493
15	3.8	3.2	6.2	chr16	2340581	2340611	(87997734)	+	(GGC)n	Simple_repeat	1	32	(0)	1397249
193	28.6	7.5	2.0	chr16	2459645	2459744	(87878601)	+	L2	LINE/L2	2441	2546	(873)	1397479
2405	2.9	0.4	0.4	chr16	3045063	3045381	(87292964)	+	AluY	SINE/Alu	1	311	(0)	1398399
1245	24.0	4.2	3.9	chr16	3045382	3045596	(87292749)	+	MLT1B	LTR/ERVL-MaLR	170	382	(8)	1398398
266	36.1	14.7	0.8	chr16	4532235	4532485	(85805860)	C	L2a	LINE/L2	(5)	3421	3130	1401330
338	21.7	1.4	1.4	chr16	4585564	4585633	(85752712)	+	MIR	SINE/MIR	14	83	(179)	1401472
346	20.0	14.8	0.0	chr16	4585674	4585788	(85752557)	C	MLT1J	LTR/ERVL-MaLR	(78)	389	255	1401473
758	21.2	6.0	0.0	chr16	4585789	4585977	(85752368)	+	L1PB3	LINE/L1	5838	6038	(116)	1401474
2733	14.9	7.5	3.7	chr16	19487759	19488251	(70850094)	C	MER74A	LTR/ERVL	(39)	519	2	1433687
2357	5.0	5.4	2.5	chr16	33335927	33340033	(56998312)	+	(TGGCTTGGC)n	Simple_repeat	1	4327	(0)	1462585
888	6.7	4.2	0.7	chr16	33340034	33340155	(56998190)	C	LTR13A	LTR/ERVK	(840)	126	1	1462584
316	25.0	0.0	0.0	chr16	34062726	34062789	(56275556)	+	AluYa8	SINE/Alu	223	286	(24)	1463558
390	15.6	3.0	0.0	chr16	34062893	34062956	(56275389)	+	AluYj4	SINE/Alu	224	289	(22)	1463559
377	20.6	0.0	0.0	chr16	34063794	34063861	(56274484)	+	AluYj4	SINE/Alu	224	291	(20)	1463563
330	24.4	1.2	2.4	chr16	34071698	34071779	(56266566)	+	AluJb	SINE/Alu	208	288	(24)	1463578
741	22.2	2.3	2.8	chr16	54380396	54380571	(35957774)	C	MLT1B	LTR/ERVL-MaLR	(11)	379	205	1479434
20	22.4	0.0	1.9	chr16	57486439	57486492	(32851853)	+	(GGCTCG)n	Simple_repeat	1	54	(0)	1485151
15	17.3	8.1	3.0	chr16	57486477	57486547	(32851798)	+	(GCTCC)n	Simple_repeat	1	74	(0)	1485152
13	19.4	6.1	1.9	chr16	57486520	57486568	(32851777)	+	(CGCCCGG)n	Simple_repeat	1	52	(0)	1485153
13	21.6	4.7	4.5	chr16	67279303	67279366	(23058979)	+	G-rich	Low_complexity	1	67	(0)	1501369
15	13.8	0.0	2.9	chr16	67279460	67279493	(23058852)	+	(GGCGC)n	Simple_repeat	1	34	(0)	1501370
1273	25.1	2.2	1.6	chr16	85580619	85580982	(4757363)	+	MLT1A	LTR/ERVL-MaLR	1	366	(8)	1535098
1267	12.7	21.7	0.4	chr17	16386331	16386566	(66870875)	+	AluSz6	SINE/Alu	3	302	(10)	1574868
1106	14.0	0.0	0.0	chr17	16386580	16386743	(66870698)	+	AluJr	SINE/Alu	139	302	(10)	1574869
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
23	18.9	3.5	5.6	chr17	31095059	31095145	(52162296)	+	(CCCCCT)n	Simple_repeat	1	90	(0)	1593994
21	6.7	0.0	0.0	chr17	31095479	31095510	(52161931)	+	(GGAAG)n	Simple_repeat	1	32	(0)	1593995
12	30.2	7.3	0.0	chr17	31095511	31095557	(52161884)	+	GA-rich	Low_complexity	4	88	(0)	1593996
879	15.3	13.8	0.0	chr17	31949525	31949661	(51307780)	C	AluSx1	SINE/Alu	(17)	295	137	1595709
2046	13.7	1.8	0.0	chr17	31949677	31949982	(51307459)	C	AluSz	SINE/Alu	(0)	312	1	1595710
993	4.0	0.0	0.0	chr17	32822870	32822994	(50434447)	+	L1PA5	LINE/L1	6030	6154	(0)	1597471
1707	21.5	0.5	1.9	chr17	34575111	34575484	(48681957)	+	MLT1B	LTR/ERVL-MaLR	22	390	(0)	1600673
17	13.4	0.0	2.9	chr17	44066597	44066631	(39190810)	+	(GCG)n	Simple_repeat	1	35	(0)	1619168
30	0.0	0.0	0.0	chr17	46868596	46868624	(36388817)	+	(AAAAC)n	Simple_repeat	1	29	(0)	1624881
1670	18.5	13.6	1.7	chr17	55384665	55385071	(27872370)	C	MER31B	LTR/ERV1	(3)	463	1	1639539
1172	26.2	6.7	1.6	chr17	55385075	55385516	(27871925)	+	L2a	LINE/L2	2936	3401	(25)	1639540
208	19.4	10.6	5.0	chr17	64777117	64777186	(18480255)	C	MIRb	SINE/MIR	(48)	220	147	1657310
2308	14.8	1.5	1.0	chr17	68588447	68588834	(14668607)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	1664457
314	28.6	1.1	3.2	chr17	74024854	74024947	(9232494)	+	MER34A	LTR/ERV1	41	132	(439)	1673358
1702	23.4	1.9	1.3	chr17	74025053	74025424	(9232017)	C	MLT1A	LTR/ERVL-MaLR	(0)	374	1	1673359
12	6.2	4.9	9.3	chr17	75878098	75878138	(7379303)	+	(AGGC)n	Simple_repeat	1	43	(0)	1676937
28	16.6	1.2	7.0	chr17	75878221	75878305	(7379136)	+	G-rich	Low_complexity	1	86	(0)	1676938
20	18.1	3.3	3.2	chr17	75878650	75878709	(7378732)	+	(CCGC)n	Simple_repeat	1	62	(0)	1676939
1908	19.0	2.3	5.7	chr17	76697038	76697439	(6560002)	+	MLT1B	LTR/ERVL-MaLR	3	390	(0)	1678561
301	27.1	0.0	0.0	chr17	77182827	77182896	(6074545)	+	MER102c	DNA/hAT-Charlie	58	127	(204)	1679617
2130	17.6	2.3	0.0	chr17	78550370	78550750	(4706691)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	1682019
378	28.7	5.1	1.2	chr17	78550769	78550937	(4706504)	+	L1MEj	LINE/L1	1234	1409	(751)	1682020
2448	5.4	0.0	0.7	chr17	80435622	80435915	(2821526)	C	AluY	SINE/Alu	(19)	292	1	1685012
2033	12.8	0.0	2.3	chr17	80435916	80436054	(2821387)	C	AluJb	SINE/Alu	(179)	133	1	1685011
620	20.8	0.8	0.0	chr17	80436055	80436184	(2821257)	C	L1MD	LINE/L1	(1946)	4200	4070	1685013
121	22.7	0.4	8.2	chr17	80929972	80930312	(2327129)	+	(CTCAG)n	Simple_repeat	1	313	(0)	1685673
32	10.5	0.0	6.5	chr17	80930313	80930405	(2327036)	+	(CAGCT)n	Simple_repeat	1	93	(0)	1685674
121	22.7	0.4	8.2	chr17	80930406	80930537	(2326904)	+	(CTCAG)n	Simple_repeat	4	127	(0)	1685675
659	22.5	4.4	1.7	chr17	81792544	81793663	(1463778)	+	(CA)n	Simple_repeat	1	1175	(0)	1686733
12	17.4	1.4	12.0	chr17	81793795	81793868	(1463573)	+	(CCCCCAG)n	Simple_repeat	1	75	(0)	1686734
659	22.5	4.4	1.7	chr17	81793921	81794546	(1462895)	+	(CA)n	Simple_repeat	1	626	(0)	1686735
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
12	27.6	4.0	3.9	chr18	22170171	22170245	(58203040)	+	(CTCCG)n	Simple_repeat	1	78	(0)	1714087
2119	14.4	2.1	5.2	chr18	24534735	24535137	(55838148)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	1718129
279	26.6	10.7	10.2	chr18	24535164	24535339	(55837946)	C	MamGypLTR1a	LTR/Gypsy	(605)	179	3	1718128
1895	16.9	7.2	2.2	chr18	26562627	26562996	(53810289)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	1721127
1722	16.7	7.5	3.2	chr18	34843394	34843765	(45529520)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	2	1732494
4792	14.0	0.2	5.3	chr18	37167058	37167893	(43205392)	C	LTR1A2	LTR/ERV1	(0)	837	44	1735696
1540	15.4	2.8	0.0	chr18	37167894	37168173	(43205112)	+	L1M4	LINE/L1	3664	3951	(2195)	1735695
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
12	23.6	0.0	9.2	chr18	79069339	79069403	(1303882)	+	G-rich	Low_complexity	1	65	(0)	1795141
1031	26.8	13.8	2.2	chr18	79200300	79200694	(1172591)	+	L1MEf	LINE/L1	2654	3070	(3249)	1795300
12	16.3	7.0	2.2	chr18	79988584	79988626	(384659)	+	(CGTG)n	Simple_repeat	1	46	(0)	1795993
431	25.0	7.5	1.2	chr18	79988965	79989126	(384159)	+	MER65C	LTR/ERV1	1	173	(288)	1795994
1404	12.8	0.5	5.3	chr19	1141697	1141922	(57475694)	C	AluJo	SINE/Alu	(97)	215	1	1798281
306	25.2	13.7	0.9	chr19	4131134	4131241	(54486375)	+	L1M5	LINE/L1	5560	5683	(559)	1804812
380	27.1	8.3	0.0	chr19	4131247	4131390	(54486226)	+	L1ME3F	LINE/L1	5705	5861	(382)	1804813
622	17.6	0.0	1.9	chr19	4131392	4131499	(54486117)	+	FLAM_A	SINE/Alu	25	130	(12)	1804814
2032	12.5	0.3	3.0	chr19	4869773	4870077	(53747539)	C	AluSx	SINE/Alu	(13)	299	3	1806724
1028	27.9	12.4	0.9	chr19	4870078	4870316	(53747300)	C	L2a	LINE/L2	(240)	3186	2935	1806723
194	18.4	9.3	0.0	chr19	4870318	4870366	(53747250)	C	MIR1_Amn	SINE/MIR	(105)	125	72	1806725
1045	18.1	0.0	0.6	chr19	10124192	10124357	(48493259)	C	AluJb	SINE/Alu	(10)	302	138	1818953
1444	14.4	0.7	8.6	chr19	10124358	10124552	(48493064)	C	LTR64	LTR/ERV1	(344)	184	1	1818950
1420	12.7	8.7	1.1	chr19	10124553	10124789	(48492827)	C	MLT1B	LTR/ERVL-MaLR	(32)	358	110	1818954
2119	13.4	0.0	2.6	chr19	10124790	10125102	(48492514)	C	AluSz	SINE/Alu	(5)	307	3	1818955
2297	10.8	0.0	0.7	chr19	14611721	14612026	(44005590)	+	AluSx	SINE/Alu	2	305	(7)	1829940
1719	14.3	15.6	0.9	chr19	14612123	14612340	(44005276)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	118	1829941
2077	14.6	0.3	0.0	chr19	14612341	14612634	(44004982)	C	AluJb	SINE/Alu	(17)	295	1	1829942
1114	21.9	16.5	1.1	chr19	14703486	14703849	(43913767)	C	MER74B	LTR/ERVL	(0)	622	192	1830199
951	16.6	0.0	0.0	chr19	14703954	14704110	(43913506)	C	MLT1B	LTR/ERVL-MaLR	(42)	348	192	1830200
1314	22.3	8.8	3.2	chr19	35930829	35931264	(22686352)	+	L1MC5a	LINE/L1	2310	2772	(5)	1861496
729	11.4	3.2	8.4	chr19	36139242	36139372	(22478244)	+	AluJr4	SINE/Alu	10	133	(179)	1861962
12739	0.5	0.0	2.1	chr19	36270447	36272042	(22345574)	+	SST1	Satellite/centr	1	1563	(0)	1862253
24	29.7	0.0	2.5	chr19	36272043	36272123	(22345493)	+	(GT)n	Simple_repeat	1	81	(0)	1862254
26	23.7	3.8	3.6	chr19	36272113	36272129	(22345487)	+	(CTGTCT)n	Simple_repeat	1	66	(44)	1862255
36	20.5	1.2	1.2	chr19	36272130	36272209	(22345407)	+	(TC)n	Simple_repeat	1	81	(0)	1862256
26	23.7	3.8	3.6	chr19	36272210	36272218	(22345398)	+	(CTGTCT)n	Simple_repeat	67	110	(0)	1862255
11383	1.6	0.0	2.0	chr19	36308415	36309981	(22307635)	+	SST1	Satellite/centr	1	1535	(28)	1862299
2003	21.7	13.8	4.5	chr19	38962221	38962706	(19654910)	+	LTR41	LTR/ERVL	64	622	(146)	1867851
25	19.6	1.5	2.9	chr19	40348828	40348895	(18268721)	+	(TATAATA)n	Simple_repeat	1	69	(0)	1870837
1192	10.6	0.3	0.0	chr19	44456469	44457877	(14159739)	C	ACRO1	Satellite/acro	(55)	1412	1	1878760
1362	26.2	6.1	6.3	chr19	44656995	44657645	(13959971)	C	L2a	LINE/L2	(225)	3201	2553	1879243
11	20.6	2.9	0.0	chr19	45999954	45999987	(12617629)	+	(GAGGCA)n	Simple_repeat	1	35	(0)	1882798
11	20.5	5.1	0.0	chr19	46000055	46000093	(12617523)	+	G-rich	Low_complexity	1	41	(0)	1882799
13	18.2	0.0	0.0	chr19	46000202	46000232	(12617384)	+	G-rich	Low_complexity	1	31	(0)	1882800
4267	15.9	0.8	4.1	chr19	50136289	50136658	(8480958)	C	L1P4	LINE/L1	(2928)	3218	2854	1892740
1120	9.2	0.0	13.3	chr19	50136668	50136863	(8480753)	+	AluSx	SINE/Alu	137	306	(6)	1892742
323	25.0	10.1	2.4	chr19	50136865	50137073	(8480543)	C	L1MC4	LINE/L1	(5098)	1117	891	1892743
232	30.1	5.2	0.4	chr19	55670357	55670454	(2947162)	C	L2a	LINE/L2	(18)	3408	3251	1904263
2238	16.0	2.1	0.0	chr2	9060224	9060598	(233132931)	+	MLT1B	LTR/ERVL-MaLR	1	383	(7)	1922252
1787	19.0	5.3	2.4	chr2	9563300	9563717	(232629812)	+	MLT1C	LTR/ERVL-MaLR	12	560	(67)	1923186
1907	14.3	0.6	2.2	chr2	9563718	9564032	(232629497)	C	AluJb	SINE/Alu	(2)	310	1	1923187
59	31.3	0.6	0.0	chr2	11483150	11483342	(230710187)	+	(TG)n	Simple_repeat	1	194	(0)	1926726
261	29.7	16.9	0.0	chr2	25878942	25879069	(216314460)	C	MIRc	SINE/MIR	(113)	155	2	1948760
117	25.1	1.3	1.9	chr2	32915873	32916183	(209277346)	+	(CTCC)n	Simple_repeat	1	315	(0)	1961188
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
1851	16.8	1.6	1.6	chr2	37221038	37221346	(204972183)	+	AluJr	SINE/Alu	1	309	(3)	1967357
16	10.8	3.3	0.0	chr2	38602456	38602485	(203591044)	+	(GCC)n	Simple_repeat	1	31	(0)	1969543
2071	18.9	0.3	1.3	chr2	39385994	39386385	(202807144)	+	MLT1B	LTR/ERVL-MaLR	3	390	(0)	1971109
3341	19.8	5.7	5.5	chr2	39386386	39386805	(202806724)	C	L1ME1	LINE/L1	(973)	5173	4762	1971106
14	14.1	0.0	3.0	chr2	70302019	70302051	(171891478)	+	(CCGCG)n	Simple_repeat	1	33	(0)	2018832
1061	20.5	12.6	7.7	chr2	70302275	70302362	(171891167)	C	L1ME2	LINE/L1	(0)	6179	6067	2018833
2166	9.3	3.8	0.0	chr2	70617860	70618137	(171575392)	+	AluSx	SINE/Alu	1	289	(23)	2019370
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
21	8.8	2.8	0.0	chr2	91478098	91478133	(150715396)	+	(CCG)n	Simple_repeat	1	37	(0)	2048369
376	18.2	9.6	0.0	chr2	121975162	121975244	(120218285)	+	MER91B	DNA/hAT-Tip100	51	208	(3316)	2089725
21	4.2	0.0	0.0	chr2	159712088	159712112	(82481417)	+	(A)n	Simple_repeat	1	25	(0)	2142018
12	16.9	2.9	2.8	chr2	159712267	159712301	(82481228)	+	(GCCA)n	Simple_repeat	1	36	(0)	2142019
67	0.0	0.0	0.0	chr2	161278891	161278950	(80914579)	+	(TCCT)n	Simple_repeat	1	60	(0)	2144204
328	24.2	0.0	0.0	chr2	161279238	161279303	(80914226)	C	MER47C	DNA/TcMar-Tigger	(31)	66	1	2144205
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
552	20.3	1.1	18.4	chr2	203238096	203238241	(38955288)	C	MER5A	DNA/hAT-Charlie	(2)	187	78	2203557
1906	12.8	4.5	0.3	chr2	203238242	203238420	(38955109)	C	AluJb	SINE/Alu	(0)	312	134	2203558
30	0.0	0.0	0.0	chr2	203238421	203238448	(38955081)	+	(T)n	Simple_repeat	1	28	(0)	2203559
1906	12.8	4.5	0.3	chr2	203238449	203238566	(38954963)	C	AluJb	SINE/Alu	(193)	119	2	2203558
552	20.3	1.1	18.4	chr2	203238567	203238642	(38954887)	C	MER5A	DNA/hAT-Charlie	(112)	77	4	2203557
19	18.8	2.0	2.0	chr2	214809689	214809738	(27383791)	+	(GGCGG)n	Simple_repeat	1	51	(0)	2220126
23	20.3	5.3	1.3	chr2	215436150	215436224	(26757305)	+	(CCCG)n	Simple_repeat	1	79	(0)	2221075
1802	19.0	4.2	2.4	chr2	221145411	221145787	(21047742)	+	MLT1B	LTR/ERVL-MaLR	7	390	(0)	2230612
1564	28.6	7.6	6.3	chr2	222395383	222395751	(19797778)	+	L1MEf	LINE/L1	639	998	(5202)	2232514
1142	21.2	4.6	15.7	chr2	222395752	222396192	(19797337)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	2232522
1564	28.6	7.6	6.3	chr2	222396193	222396620	(19796909)	+	L1MEf	LINE/L1	999	1450	(4750)	2232514
24	12.1	2.2	0.0	chr2	222866739	222866744	(19326785)	+	(GCCCC)n	Simple_repeat	1	45	(0)	2233372
30	5.5	0.0	0.0	chr2	222866745	222866782	(19326747)	+	(C)n	Simple_repeat	1	38	(0)	2233373
2500	11.6	0.0	0.0	chr2	222866823	222867132	(19326397)	C	AluSg	SINE/Alu	(0)	310	1	2233374
2047	17.5	1.3	1.8	chr2	223148975	223149364	(19044165)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	3	2233809
490	29.8	4.7	6.4	chr2	223149365	223149622	(19043907)	+	MLT1K	LTR/ERVL-MaLR	327	569	(41)	2233808
1979	10.9	11.9	10.3	chr2	230846485	230846863	(11346666)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	5	2245785
332	22.2	3.2	0.0	chr2	231831577	231831664	(10361865)	+	MER20	DNA/hAT-Charlie	128	218	(1)	2247712
286	25.3	2.2	0.0	chr2	231831668	231831754	(10361775)	+	MER20	DNA/hAT-Charlie	131	219	(0)	2247712
323	24.2	3.2	0.0	chr2	231831755	231831843	(10361686)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247712
351	23.2	2.0	2.0	chr2	231831871	231831971	(10361558)	+	MER20	DNA/hAT-Charlie	119	219	(0)	2247712
328	25.0	2.1	0.0	chr2	231831972	231832061	(10361468)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247712
364	22.7	1.1	0.0	chr2	231832103	231832190	(10361339)	+	MER20	DNA/hAT-Charlie	131	219	(0)	2247713
310	24.2	3.2	0.0	chr2	231832191	231832279	(10361250)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
268	25.3	2.2	0.0	chr2	231832282	231832368	(10361161)	+	MER20	DNA/hAT-Charlie	131	219	(0)	2247713
339	22.0	3.2	0.0	chr2	231832369	231832457	(10361072)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
326	23.1	3.2	0.0	chr2	231832458	231832546	(10360983)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
363	20.9	3.2	0.0	chr2	231832547	231832635	(10360894)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
331	23.9	2.1	0.0	chr2	231832636	231832725	(10360804)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
360	23.2	2.0	2.0	chr2	231832753	231832853	(10360676)	+	MER20	DNA/hAT-Charlie	119	219	(0)	2247713
2231	15.0	0.8	0.0	chr2	233352613	233352991	(8840538)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	9	2250390
1656	17.6	12.8	2.4	chr2	237958617	237958695	(4234834)	C	MLT1D	LTR/ERVL-MaLR	(35)	470	371	2257147
1731	18.1	1.0	15.7	chr2	237958696	237959153	(4234376)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	2257148
421	30.7	7.8	2.4	chr20	373504	373710	(64070457)	+	MIRb	SINE/MIR	19	237	(31)	2262791
974	28.2	2.0	7.2	chr20	373979	374017	(64070150)	C	MER113	DNA/hAT-Charlie	(72)	449	411	2262792
30	5.2	0.0	2.4	chr20	374018	374059	(64070108)	+	(TTTA)n	Simple_repeat	1	42	(0)	2262793
2038	14.3	0.0	0.0	chr20	374060	374338	(64069829)	C	AluSz6	SINE/Alu	(33)	279	1	2262794
411	24.8	0.0	9.9	chr20	29411577	29411728	(35032439)	+	LSAU	Satellite	2	138	(360)	2304090
2860	28.3	4.9	5.5	chr20	30283322	30285229	(34158938)	+	SST1	Satellite/centr	1	1895	(14)	2304820
1159	13.1	0.5	0.0	chr20	30519545	30520660	(33923507)	C	ACRO1	Satellite/acro	(55)	1121	1	2305115
4636	22.9	5.1	7.7	chr20	30625824	30628238	(33815929)	C	L1PA13	LINE/L1	(3745)	3021	486	2305284
514	31.8	2.0	2.4	chr20	33401075	33401325	(31042842)	C	MIR	SINE/MIR	(10)	252	3	2310617
521	20.7	3.9	20.5	chr20	33401624	33401937	(31042230)	+	MER33	DNA/hAT-Charlie	14	267	(57)	2310618
244	28.0	16.7	1.0	chr20	38664231	38664331	(25779836)	+	MIRb	SINE/MIR	28	147	(121)	2322595
1638	18.3	7.4	3.9	chr20	38664394	38664756	(25779411)	C	MLT1B	LTR/ERVL-MaLR	(12)	378	2	2322596
1379	22.4	5.1	10.8	chr20	44235747	44236161	(20208006)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	2332981
840	28.7	9.4	0.2	chr20	49610666	49611101	(14833066)	C	L2a	LINE/L2	(510)	2909	2430	2344881
496	23.6	0.7	5.3	chr20	49611315	49611466	(14832701)	C	MER20	DNA/hAT-Charlie	(59)	160	16	2344884
18	15.0	4.1	3.9	chr20	50190916	50190964	(14253203)	+	(GCA)n	Simple_repeat	1	51	(0)	2346323
473	30.8	12.3	0.9	chr20	60206203	60206645	(4237522)	C	L2a	LINE/L2	(13)	3413	2903	2365634
1742	16.0	11.0	9.5	chr20	60206646	60206686	(4237481)	C	MSTA	LTR/ERVL-MaLR	(0)	428	390	2365635
1639	21.8	2.2	0.0	chr20	61413862	61414214	(3029953)	C	MLT1B	LTR/ERVL-MaLR	(22)	368	8	2367345
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
40632	0.2	1.2	0.8	chr21	8214773	8218941	(38491042)	+	LSU-rRNA_Hsa	rRNA	878	5034	(1)	2373279
797	22.4	0.5	0.1	chr21	8229975	8230765	(38479218)	+	(TCTC)n	Simple_repeat	2	795	(0)	2373327
446	20.9	0.1	6.5	chr21	8230776	8230919	(38479064)	+	MER39B	LTR/ERV1	298	454	(253)	2373328
880	13.0	0.0	0.0	chr21	8239093	8239215	(38470768)	C	AluSx3	SINE/Alu	(9)	302	180	2373343
47	0.0	0.0	0.0	chr21	8239234	8239276	(38470707)	+	(T)n	Simple_repeat	1	43	(0)	2373344
37669	0.4	1.2	0.8	chr21	8397807	8401980	(38308003)	+	LSU-rRNA_Hsa	rRNA	878	5034	(1)	2373509
24	15.5	7.0	0.0	chr21	8401981	8402037	(38307946)	+	(CG)n	Simple_repeat	1	61	(0)	2373511
14	13.3	9.8	0.0	chr21	8402028	8402068	(38307915)	+	(CGTC)n	Simple_repeat	1	45	(0)	2373512
312	38.2	6.5	3.6	chr21	8419786	8420171	(38289812)	C	HAL1	LINE/L1	(1230)	1277	880	2373573
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
12	20.8	0.0	2.9	chr21	8434102	8434136	(38275847)	+	(CCG)n	Simple_repeat	1	35	(0)	2373611
25399	0.2	1.5	0.8	chr21	8441146	8441992	(38267991)	+	LSU-rRNA_Hsa	rRNA	1	877	(4158)	2373624
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
334	30.3	5.3	0.0	chr21	9246374	9246462	(37463521)	+	AluYa8	SINE/Alu	185	278	(32)	2374337
436	12.7	0.0	0.0	chr21	9246781	9246835	(37463148)	+	AluYj4	SINE/Alu	225	279	(32)	2374338
404	15.6	1.5	0.0	chr21	9247151	9247214	(37462769)	+	AluYj4	SINE/Alu	224	288	(23)	2374339
74	12.3	0.0	0.0	chr21	9247783	9247915	(37462068)	+	(TGGAA)n	Simple_repeat	1	133	(0)	2374340
378	16.1	3.0	0.2	chr21	9247917	9247990	(37461993)	+	AluJb	SINE/Alu	216	290	(12)	2374341
1562	29.8	5.6	6.5	chr21	9817901	9819192	(36890791)	C	SST1	Satellite/centr	(1)	1562	284	2374896
20	28.0	1.7	0.0	chr21	9819212	9819271	(36890712)	+	GA-rich	Low_complexity	1	61	(0)	2374897
1996	29.3	5.0	5.8	chr21	9819321	9820600	(36889383)	C	SST1	Satellite/centr	(11)	1552	284	2374899
1750	28.6	6.0	7.2	chr21	9822132	9823427	(36886556)	C	SST1	Satellite/centr	(1)	1562	284	2374905
1523	28.6	6.2	6.9	chr21	9836200	9837509	(36872474)	C	SST1	Satellite/centr	(1)	1562	262	2374935
3733	5.1	0.8	0.0	chr21	10269869	10270342	(36439641)	+	HSATI	Satellite	90	567	(10)	2375347
1732	14.4	0.0	5.1	chr21	10270343	10270634	(36439349)	+	AluSc8	SINE/Alu	13	289	(22)	2375348
404	28.3	11.0	2.7	chr21	10427070	10427382	(36282601)	C	L2c	LINE/L2	(213)	3174	2827	2375541
25	15.4	0.0	0.0	chr21	10427515	10427557	(36282426)	+	(CA)n	Simple_repeat	1	43	(0)	2375542
1882	18.3	3.6	5.1	chr21	33495640	33496030	(13213953)	+	MLT1B	LTR/ERVL-MaLR	6	390	(0)	2405109
2130	11.9	1.3	0.0	chr21	37579027	37579320	(9130663)	C	AluSc	SINE/Alu	(10)	299	2	2411823
1274	28.2	4.6	5.9	chr21	37579321	37579542	(9130441)	C	L1MEf	LINE/L1	(5480)	1557	1119	2411822
1460	22.6	3.5	2.8	chr21	43854062	43854448	(2855535)	+	MLT1B	LTR/ERVL-MaLR	1	467	(0)	2420929
1047	21.6	8.7	2.3	chr21	44793709	44794031	(1915952)	+	L1MC5	LINE/L1	6966	7262	(2042)	2422157
738	14.0	6.1	1.2	chr21	44794035	44794269	(1915714)	+	MLT1B	LTR/ERVL-MaLR	86	383	(7)	2422158
582	24.5	5.2	6.0	chr21	44794273	44794524	(1915459)	+	L1M4	LINE/L1	4914	5163	(983)	2422159
472	28.1	8.2	2.9	chr21	46052314	46052452	(657531)	+	MLT1A	LTR/ERVL-MaLR	7	153	(237)	2423456
404	22.4	8.8	2.0	chr21	46052478	46052631	(657352)	+	MLT1A	LTR/ERVL-MaLR	230	374	(0)	2423456
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
194	23.1	0.0	1.9	chr22	11817844	11817896	(39000572)	C	MER5A	DNA/hAT-Charlie	(20)	169	118	2425392
590	21.9	0.2	0.0	chr22	11818875	11819136	(38999332)	+	ACRO1	Satellite/acro	1	262	(0)	2425395
1124	22.8	3.2	0.8	chr22	11900617	11900862	(38917606)	C	AluJr	SINE/Alu	(48)	264	13	2425511
41	8.0	0.0	0.0	chr22	12173926	12173978	(38644490)	+	(GT)n	Simple_repeat	1	53	(0)	2425781
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
52	15.1	1.1	0.0	chr22	17419496	17419587	(33398881)	+	GA-rich	Low_complexity	1	93	(0)	2428965
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
1524	22.1	7.5	2.2	chr22	19222196	19222560	(31595908)	+	MLT1B	LTR/ERVL-MaLR	1	386	(4)	2431627
12	29.8	5.1	0.0	chr22	20702743	20702801	(30115667)	+	G-rich	Low_complexity	1	62	(0)	2433781
13	8.1	3.6	3.5	chr22	20702840	20702867	(30115601)	+	(GCA)n	Simple_repeat	1	29	(0)	2433782
16	19.9	0.0	2.4	chr22	20704086	20704127	(30114341)	+	(CCCCTC)n	Simple_repeat	1	42	(0)	2433785
12	22.2	7.7	0.0	chr22	20704302	20704353	(30114115)	+	(GCCGCT)n	Simple_repeat	1	56	(0)	2433786
2583	9.9	0.0	0.0	chr22	33122346	33122658	(17695810)	C	AluSq2	SINE/Alu	(0)	313	1	2458441
6832	15.2	4.5	2.9	chr22	33122659	33123609	(17694859)	C	MER66-int	LTR/ERV1	(4512)	2164	1210	2458440
700	20.9	5.2	2.1	chr22	35651140	35651325	(15167143)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	276	2463526
276	20.0	6.9	3.1	chr22	35651339	35651436	(15167032)	C	MLT1C	LTR/ERVL-MaLR	(164)	226	125	2463526
2373	9.3	0.0	2.2	chr22	36459978	36460289	(14358179)	+	AluSx1	SINE/Alu	1	305	(7)	2465105
1261	14.3	0.5	0.0	chr22	36460320	36460515	(14357953)	+	MLT1B	LTR/ERVL-MaLR	194	390	(0)	2465106
245	26.8	14.8	1.6	chr22	36460530	36460658	(14357810)	C	MIRb	SINE/MIR	(0)	268	120	2465107
2458	14.6	1.5	0.3	chr22	36739108	36739492	(14078976)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	2465747
1029	26.5	7.6	6.6	chr22	36739493	36739810	(14078658)	C	MLT1G1-int	LTR/ERVL-MaLR	(33)	1456	1121	2465746
2162	13.4	2.9	4.9	chr22	37263494	37263789	(13554679)	+	MLT1B	LTR/ERVL-MaLR	101	390	(0)	2466839
336	21.0	0.0	4.7	chr22	37263824	37263908	(13554560)	+	L2	LINE/L2	1967	2047	(1372)	2466841
21	30.2	2.1	2.0	chr22	38398893	38399009	(12419459)	+	(CGCCC)n	Simple_repeat	1	117	(0)	2469396
12	4.7	4.5	0.0	chr22	38399014	38399035	(12419433)	+	(GCGA)n	Simple_repeat	1	23	(0)	2469397
331	30.1	12.1	1.9	chr3	10248046	10248201	(188047358)	+	MIRb	SINE/MIR	60	233	(35)	2509044
12	21.5	7.1	1.7	chr3	10248718	10248773	(188046786)	+	(CGGCGCC)n	Simple_repeat	1	60	(0)	2509045
1287	17.2	10.9	0.0	chr3	12451435	12451458	(185844101)	C	MLT1F	LTR/ERVL-MaLR	(216)	332	309	2513282
1675	21.6	4.9	1.6	chr3	12451459	12451835	(185843724)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	2513283
1287	17.2	10.9	0.0	chr3	12451836	12452071	(185843488)	C	MLT1F	LTR/ERVL-MaLR	(240)	308	41	2513282
21	22.0	0.0	5.6	chr3	36764214	36764284	(161531275)	+	G-rich	Low_complexity	1	71	(0)	2550363
25	21.1	0.0	1.6	chr3	36764397	36764459	(161531100)	+	(CCGCCCG)n	Simple_repeat	1	61	(0)	2550364
2338	15.6	0.8	2.5	chr3	43873635	43874028	(154421531)	+	MLT1B	LTR/ERVL-MaLR	4	390	(0)	2561297
320	21.9	0.0	9.6	chr3	75668819	75668954	(122626605)	C	LSAU	Satellite	(374)	124	2	2614560
2644	19.7	2.8	3.1	chr3	127723672	127723805	(70571754)	C	L1MB2	LINE/L1	(3)	6168	6024	2680553
2123	14.1	3.6	0.3	chr3	127723806	127724181	(70571378)	+	MLT1B	LTR/ERVL-MaLR	1	389	(1)	2680554
2644	19.7	2.8	3.1	chr3	127724182	127724628	(70570931)	C	L1MB2	LINE/L1	(148)	6023	5589	2680553
15	5.8	10.5	2.4	chr3	136751804	136751841	(61543718)	+	G-rich	Low_complexity	1	42	(0)	2695002
2295	13.4	0.0	0.0	chr3	142554954	142555266	(55740293)	+	AluSq2	SINE/Alu	1	313	(0)	2704297
12	31.9	3.2	0.0	chr3	142596364	142596425	(55699134)	+	G-rich	Low_complexity	1	64	(0)	2704384
15	17.7	0.0	0.0	chr3	150546396	150546427	(47749132)	+	(CGC)n	Simple_repeat	1	32	(0)	2715401
12411	15.3	1.7	2.5	chr3	160885420	160887573	(37407986)	+	L1PA7	LINE/L1	3	2151	(4332)	2730519
14	13.2	2.9	2.8	chr3	165192820	165192854	(33102705)	+	(GCTGCC)n	Simple_repeat	1	36	(0)	2735879
481	22.9	5.9	5.3	chr3	186172787	186172859	(12122700)	+	MIRc	SINE/MIR	77	149	(119)	2767849
1982	17.2	1.0	5.4	chr3	186172860	186173264	(12122295)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	4	2767850
11	21.3	9.3	0.0	chr3	186930900	186930953	(11364606)	+	G-rich	Low_complexity	1	59	(0)	2769260
638	25.3	15.9	2.4	chr4	3396760	3397211	(186817344)	C	Kanga2_a	DNA/TcMar-Tc2	(310)	578	65	2793131
192	24.1	7.0	0.0	chr4	3397408	3397486	(186817069)	C	L2	LINE/L2	(1202)	2217	2133	2793135
257	34.6	8.9	0.8	chr4	3778095	3778228	(186436327)	C	L2c	LINE/L2	(2)	3385	3240	2793595
18	12.1	2.8	0.0	chr4	3778276	3778311	(186436244)	+	(GGGTG)n	Simple_repeat	1	37	(0)	2793596
192	37.3	9.0	4.1	chr4	3778343	3778388	(186436167)	+	MIR	SINE/MIR	5	47	(215)	2793597
2187	18.1	1.6	0.0	chr4	3778389	3778769	(186435786)	C	MLT1B	LTR/ERVL-MaLR	(3)	387	1	2793598
2343	18.2	1.9	2.6	chr4	4330050	4330450	(185884105)	+	MLT1C	LTR/ERVL-MaLR	1	398	(69)	2794519
2456	7.5	0.0	0.0	chr4	4330451	4330744	(185883811)	C	AluY	SINE/Alu	(17)	294	1	2794520
863	17.6	1.2	0.2	chr4	49090455	49091234	(141123321)	+	ALR/Alpha	Satellite/centr	1	788	(0)	2864886
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
1094	12.9	0.2	0.0	chr4	49322499	49324803	(140889752)	+	ACRO1	Satellite/acro	1	2308	(0)	2865130
1130	13.8	0.3	0.1	chr4	49514156	49515857	(140698698)	+	ACRO1	Satellite/acro	1	1705	(0)	2865184
27	2.8	2.6	2.5	chr4	81030439	81030477	(109184078)	+	(AAAAC)n	Simple_repeat	1	40	(0)	2905572
12	17.3	8.9	3.3	chr4	81030514	81030569	(109183986)	+	(TCCTCT)n	Simple_repeat	1	61	(0)	2905573
28	25.0	0.0	0.0	chr4	81030718	81030778	(109183777)	+	(CA)n	Simple_repeat	1	61	(0)	2905574
29	19.8	1.9	4.4	chr4	98995507	98995586	(91218969)	+	G-rich	Low_complexity	1	78	(0)	2931108
1692	18.5	13.4	1.5	chr4	102682548	102682953	(87531602)	+	MLT1C	LTR/ERVL-MaLR	6	467	(0)	2936005
349	28.0	2.9	13.7	chr4	109816608	109816711	(80397844)	C	MIRb	SINE/MIR	(115)	153	65	2945573
796	32.2	4.9	2.2	chr4	128601304	128601662	(61612893)	C	MamRTE1	LINE/RTE-BovB	(331)	3481	3113	2970966
391	32.1	19.6	0.9	chr4	128601816	128602243	(61612312)	C	MamRTE1	LINE/RTE-BovB	(812)	3000	2474	2970966
2369	9.1	0.3	0.3	chr4	139905211	139905508	(50309047)	+	AluY	SINE/Alu	1	298	(13)	2985427
2113	15.6	3.1	4.5	chr4	139905561	139905956	(50308599)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	2985428
2230	26.5	11.2	9.3	chr4	145444674	145445519	(44769036)	+	L1M5	LINE/L1	4040	4968	(1178)	2992914
1812	18.1	3.6	3.9	chr4	145445520	145445905	(44768650)	C	MLT1B	LTR/ERVL-MaLR	(3)	387	3	2992917
630	33.1	8.8	4.9	chr4	186509648	186510374	(3704181)	C	ERVL-E-int	LTR/ERVL	(110)	5116	4374	3049776
2291	12.4	3.1	2.1	chr4	186510375	186510760	(3703795)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	3049777
398	23.5	0.7	2.2	chr4	190022652	190022790	(191765)	+	LSAU	Satellite	2	138	(360)	3054526
543	5.4	1.2	0.9	chr4	190122449	190123118	(91437)	+	(AGGGTT)n	Simple_repeat	1	678	(0)	3054644
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
949	27.2	5.1	4.2	chr5	3659659	3659988	(177878271)	C	L1MD2	LINE/L1	(7)	6352	6020	3058563
1059	26.2	3.1	1.7	chr5	3660215	3660501	(177877758)	C	L1MD1	LINE/L1	(168)	6074	5784	3058564
1482	21.7	4.0	5.5	chr5	6370990	6371374	(175166885)	+	MLT1B	LTR/ERVL-MaLR	1	379	(11)	3061746
227	32.8	7.8	3.2	chr5	6371391	6371513	(175166746)	C	MER5A	DNA/hAT-Charlie	(26)	163	35	3061747
1975	18.1	3.9	4.1	chr5	10891062	10891452	(170646807)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	3067607
2084	15.4	0.3	0.3	chr5	40694039	40694350	(140843909)	C	AluSz6	SINE/Alu	(0)	312	1	3109277
1843	16.1	4.1	1.1	chr5	40694405	40694762	(140843497)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	22	3109278
1962	14.2	9.2	3.3	chr5	55860791	55861155	(125677104)	C	MLT1B	LTR/ERVL-MaLR	(1)	389	1	3124003
2156	11.0	5.9	1.9	chr5	55861287	55861611	(125676648)	+	MER1B	DNA/hAT-Charlie	1	339	(0)	3124004
2855	16.8	9.4	5.0	chr5	71586451	71587046	(109951213)	C	MER51A	LTR/ERV1	(9)	625	1	3147717
22	8.1	0.0	6.7	chr5	88141323	88141367	(93396892)	+	(GGA)n	Simple_repeat	1	45	(0)	3171928
1675	12.5	0.9	0.4	chr5	106535533	106535764	(75002495)	C	AluSc	SINE/Alu	(27)	282	50	3195261
14	9.6	0.0	0.0	chr5	159773408	159773430	(21764829)	+	(GCG)n	Simple_repeat	1	23	(0)	3276694
1942	15.9	0.5	3.8	chr5	160434761	160435153	(21103106)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	11	3278149
1411	23.9	4.6	6.8	chr5	174131537	174132004	(7406255)	+	MLT1C	LTR/ERVL-MaLR	2	458	(9)	3300920
746	33.1	5.7	9.4	chr5	174132016	174132672	(7405587)	+	L2a	LINE/L2	2778	3426	(0)	3300921
206	22.0	4.8	3.3	chr5	174503881	174503941	(7034318)	C	MamRTE1	LINE/RTE-BovB	(2552)	1260	1199	3301609
318	29.3	16.1	2.0	chr5	178227007	178227047	(3311212)	C	L2c	LINE/L2	(183)	3204	3165	3308821
1775	19.5	3.6	3.4	chr5	178227048	178227434	(3310825)	+	MLT1B	LTR/ERVL-MaLR	3	390	(0)	3308826
1346	30.9	13.7	1.7	chr5	178227435	178228437	(3309822)	C	L2c	LINE/L2	(223)	3164	2002	3308821
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
2565	4.7	0.0	0.0	chr5	180493737	180494032	(1044227)	+	AluYk2	SINE/Alu	2	297	(14)	3312777
20	31.7	0.0	3.3	chr5	180494108	180494198	(1044061)	+	GA-rich	Low_complexity	1	91	(0)	3312778
19	11.6	0.0	0.0	chr6	2765183	2765210	(168040769)	+	(C)n	Simple_repeat	1	28	(0)	3317888
189	37.4	5.1	8.0	chr6	8649181	8649209	(162156770)	+	L2c	LINE/L2	2921	2944	(443)	3327009
1834	19.3	1.3	4.5	chr6	8649210	8649610	(162156369)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	3	3327010
2372	12.2	3.1	0.8	chr6	11295900	11296272	(159509707)	+	MLT1B	LTR/ERVL-MaLR	1	382	(8)	3331021
13	23.6	4.8	3.0	chr6	20212577	20212639	(150593340)	+	(CCGGC)n	Simple_repeat	1	66	(0)	3345605
1624	21.9	4.6	1.9	chr6	22006725	22007101	(148798878)	+	MLT1B	LTR/ERVL-MaLR	3	390	(0)	3348704
785	13.8	0.0	20.4	chr6	28764061	28764285	(142041694)	C	AluSx	SINE/Alu	(10)	302	124	3359185
14	27.3	0.0	2.0	chr6	31862440	31862489	(138943490)	+	GA-rich	Low_complexity	1	50	(0)	3364050
307	24.6	1.7	8.1	chr6	37010032	37010110	(133795869)	C	MLT1B	LTR/ERVL-MaLR	(51)	438	367	3373719
1378	21.8	9.1	3.1	chr6	37010128	37010487	(133795492)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	7	3373719
557	28.0	7.1	9.4	chr6	37010493	37010860	(133795119)	C	MLT1H1	LTR/ERVL-MaLR	(168)	387	55	3373721
1007	29.4	15.1	7.0	chr6	42786546	42787484	(128018495)	C	L2c	LINE/L2	(71)	3316	2224	3384032
66	5.0	4.5	1.7	chr6	79991416	79991517	(90814462)	+	(GAAA)n	Simple_repeat	4	108	(0)	3432054
1004	17.5	0.0	0.0	chr6	79991524	79991683	(90814296)	+	MLT1B	LTR/ERVL-MaLR	231	390	(0)	3432052
13	23.8	2.2	2.1	chr6	104859847	104859892	(65946087)	+	(CCG)n	Simple_repeat	1	47	(0)	3464541
12017	12.4	5.7	2.5	chr6	119236728	119237363	(51568616)	+	Tigger1	DNA/TcMar-Tigger	1446	2071	(347)	3486334
2230	12.5	0.0	0.7	chr6	143213489	143213816	(27592163)	C	AluSx1	SINE/Alu	(0)	312	1	3519542
15	18.4	0.0	7.8	chr6	150143197	150143247	(20662732)	+	(CGG)n	Simple_repeat	1	51	(0)	3529746
14	28.5	2.0	0.0	chr6	150143349	150143399	(20662580)	+	(GCA)n	Simple_repeat	1	52	(0)	3529747
1316	18.5	7.8	15.8	chr6	150517069	150517491	(20288488)	+	MLT1B	LTR/ERVL-MaLR	5	390	(0)	3530343
48	9.2	2.4	2.3	chr6	153384826	153384912	(17421067)	+	(GAAAA)n	Simple_repeat	1	87	(0)	3534851
1102	14.8	0.0	1.6	chr6	153384941	153385126	(17420853)	+	MLT1B	LTR/ERVL-MaLR	192	374	(16)	3534852
798	20.6	11.7	15.2	chr6	163862778	163863132	(6942847)	+	MLT1B	LTR/ERVL-MaLR	4	344	(46)	3550028
40	0.0	0.0	0.0	chr6	163863182	163863218	(6942761)	+	(TATT)n	Simple_repeat	1	37	(0)	3550029
2236	11.3	0.0	1.1	chr6	163863222	163863504	(6942475)	C	AluSx	SINE/Alu	(31)	281	2	3550030
1810	18.3	2.1	5.2	chr6	166397930	166398332	(4407647)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	3553217
388	35.6	4.6	3.7	chr6	168614431	168615747	(2190232)	+	TAR1	Satellite/telo	1	1328	(552)	3555632
1853	16.6	2.9	0.3	chr7	3079609	3079909	(156266064)	+	AluJb	SINE/Alu	1	309	(3)	3562631
2240	15.4	0.3	8.5	chr7	3079910	3080128	(156265845)	+	MLT1B	LTR/ERVL-MaLR	172	390	(0)	3562629
1016	28.7	1.6	5.3	chr7	3080159	3080552	(156265421)	C	MLT1H	LTR/ERVL-MaLR	(165)	384	6	3562632
14	15.4	5.6	0.0	chr7	12686828	12686863	(146659110)	+	(GGCG)n	Simple_repeat	1	38	(0)	3577694
2169	24.5	10.0	4.1	chr7	34175586	34175882	(125170091)	C	L1MDa	LINE/L1	(5318)	1315	1001	3608925
1781	18.3	2.3	5.5	chr7	34175883	34176281	(125169692)	C	MLT1B	LTR/ERVL-MaLR	(2)	388	3	3608927
2539	6.2	0.0	0.7	chr7	40531669	40531973	(118814000)	C	AluY	SINE/Alu	(8)	303	1	3618600
420	12.0	9.0	1.9	chr7	47474116	47475164	(111870809)	+	(AC)n	Simple_repeat	1	1122	(0)	3628577
5739	10.9	1.1	1.0	chr7	54933085	54933175	(104412798)	+	L1MA3	LINE/L1	7464	7557	(167)	3637987
12	27.4	1.8	3.5	chr7	54933238	54933293	(104412680)	+	G-rich	Low_complexity	1	57	(0)	3637989
12	12.8	5.6	2.6	chr7	54933402	54933437	(104412536)	+	(GAGGCG)n	Simple_repeat	1	38	(0)	3637990
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
2481	10.6	0.0	0.0	chr7	74296508	74296818	(85049155)	+	AluSx3	SINE/Alu	1	311	(0)	3666703
787	27.0	7.8	3.9	chr7	74296819	74296944	(85049029)	+	MLT1B	LTR/ERVL-MaLR	340	466	(1)	3666701
16	19.3	0.0	4.4	chr7	77536973	77537017	(81808956)	+	G-rich	Low_complexity	1	45	(0)	3673969
27	0.0	0.0	0.0	chr7	77537106	77537131	(81808842)	+	(GCGGCT)n	Simple_repeat	1	26	(0)	3673970
13	23.8	0.0	2.1	chr7	77537132	77537169	(81808804)	+	G-rich	Low_complexity	8	45	(0)	3673971
34	0.0	0.0	0.0	chr7	77537204	77537234	(81808739)	+	(GGC)n	Simple_repeat	1	31	(0)	3673972
12	13.7	0.0	0.0	chr7	77537368	77537391	(81808582)	+	(GCC)n	Simple_repeat	1	24	(0)	3673973
400	10.8	0.2	2.5	chr7	98810993	98811637	(60534336)	+	(TGG)n	Simple_repeat	1	646	(0)	3703453
32	3.0	0.0	0.0	chr7	101739857	101739890	(57606083)	+	(GGA)n	Simple_repeat	1	34	(0)	3709551
222	30.4	5.9	5.1	chr7	101862218	101862335	(57483638)	C	L2b	LINE/L2	(8)	3367	3249	3709830
24	23.2	2.0	5.8	chr7	102517742	102517842	(56828131)	+	G-rich	Low_complexity	1	103	(0)	3711182
15	24.9	0.0	5.2	chr7	108456439	108456496	(50889477)	+	(CCCCGC)n	Simple_repeat	1	58	(0)	3720552
14	15.5	0.0	7.1	chr7	108456716	108456757	(50889216)	+	G-rich	Low_complexity	1	42	(0)	3720553
2081	12.2	4.9	5.4	chr7	112171765	112172154	(47173819)	C	MLT1B	LTR/ERVL-MaLR	(2)	388	1	3725399
274	27.4	9.3	2.5	chr7	135170070	135170189	(24175784)	C	MIRb	SINE/MIR	(110)	158	30	3758537
2116	12.8	0.7	1.0	chr7	139727936	139728241	(19617732)	C	AluJo	SINE/Alu	(6)	306	2	3766093
1945	17.5	1.6	8.0	chr7	139728296	139728710	(19617263)	C	MLT1B	LTR/ERVL-MaLR	(2)	388	1	3766094
26	0.0	0.0	0.0	chr7	146116215	146116239	(13229734)	+	(GGC)n	Simple_repeat	1	25	(0)	3775458
28	31.0	0.0	0.0	chr7	148941873	148941948	(10404025)	+	(TA)n	Simple_repeat	1	76	(0)	3779657
588	11.8	0.0	0.0	chr7	148941968	148942043	(10403930)	C	AluSc	SINE/Alu	(30)	279	204	3779658
808	10.6	0.0	6.8	chr7	148942044	148942175	(10403798)	+	FLAM_C	SINE/Alu	13	135	(8)	3779659
2265	8.6	0.0	0.0	chr7	149828261	149828540	(9517433)	+	AluSc	SINE/Alu	2	281	(28)	3781204
13	18.4	4.2	8.0	chr7	151303539	151303610	(8042363)	+	(GGCTG)n	Simple_repeat	1	75	(0)	3783206
2091	16.8	1.3	2.8	chr7	152891702	152892094	(6453879)	+	MLT1B	LTR/ERVL-MaLR	4	390	(0)	3786153
1673	21.9	4.9	2.9	chr7	157044350	157044804	(2301169)	C	MLT1C	LTR/ERVL-MaLR	(2)	465	1	3791752
2394	10.3	11.7	0.5	chr7	158594718	158595097	(750876)	+	MSTA	LTR/ERVL-MaLR	1	428	(0)	3793407
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
1954	17.3	1.3	8.0	chr8	26127040	26127453	(119011183)	C	MLT1B	LTR/ERVL-MaLR	(4)	386	1	3832128
340	27.4	7.0	0.0	chr8	26426177	26426282	(118712354)	+	HAL1	LINE/L1	30	143	(2364)	3832710
2179	11.6	0.0	1.3	chr8	26426422	26426732	(118711904)	+	AluSx	SINE/Alu	1	307	(5)	3832711
2253	12.9	0.0	0.0	chr8	41721376	41721685	(103416951)	+	AluSz	SINE/Alu	2	311	(1)	3857486
2159	18.8	4.3	2.6	chr8	41721686	41721805	(103416831)	+	MLT1C	LTR/ERVL-MaLR	345	461	(6)	3857485
1574	27.8	4.4	3.6	chr8	57205915	57206586	(87932050)	C	MER50	LTR/ERV1	(29)	705	28	3874990
2155	21.6	10.2	2.4	chr8	57209256	57210098	(87928538)	C	MER50-int	LTR/ERV1	(5568)	1637	729	3874991
1080	24.1	1.3	2.5	chr8	57210109	57210427	(87928209)	C	MER50	LTR/ERV1	(134)	600	286	3874991
828	29.3	5.5	3.9	chr8	57210498	57210965	(87927671)	C	MER50	LTR/ERV1	(231)	503	28	3874994
12	20.2	0.0	6.7	chr8	78665979	78666023	(66472613)	+	(CCCCGC)n	Simple_repeat	1	45	(0)	3904970
9953	10.6	0.1	0.7	chr8	85742400	85743923	(59394713)	C	L1P1	LINE/L1	(2125)	4021	2507	3914963
18	0.0	7.3	6.8	chr8	94896244	94896292	(50242344)	+	(CCG)n	Simple_repeat	1	49	(0)	3927774
1710	15.3	6.4	1.0	chr8	102732789	102733099	(42405537)	+	MLT1C	LTR/ERVL-MaLR	139	467	(0)	3940998
377	22.0	4.2	0.0	chr8	102733106	102733196	(42405440)	+	MIRb	SINE/MIR	104	198	(70)	3940999
2321	31.3	7.0	1.4	chr8	117619325	117620401	(27518235)	+	L2a	LINE/L2	2092	3228	(198)	3961887
1217	21.9	2.3	0.0	chr8	142061107	142061398	(3077238)	+	MLT1B	LTR/ERVL-MaLR	35	333	(57)	4004468
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
1387	25.7	7.0	3.4	chr8	144125268	144125631	(1013005)	+	L1MC4	LINE/L1	7167	7535	(507)	4007142
293	19.1	0.0	0.0	chr8	144126225	144126287	(1012349)	+	L1MC4	LINE/L1	7955	8017	(25)	4007142
15	16.3	0.0	2.8	chr9	4299650	4299685	(134095032)	+	(GGCGGA)n	Simple_repeat	1	36	(0)	4014805
23	21.8	1.0	8.0	chr9	16727115	16727213	(121667504)	+	(GCGG)n	Simple_repeat	1	100	(0)	4032281
787	14.2	0.5	0.2	chr9	40905014	40915781	(97478936)	+	CER	Satellite	1	10802	(0)	4067935
296	22.0	5.7	2.5	chr9	41229379	41230391	(97164326)	+	(TG)n	Simple_repeat	1	1071	(0)	4068370
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
2605	29.9	5.1	4.7	chr9	65388281	65390272	(73004445)	+	SST1	Satellite/centr	1	2001	(859)	4076190
14	17.1	11.9	0.0	chr9	68705180	68705238	(69689479)	+	(GGCAGCC)n	Simple_repeat	1	66	(0)	4080300
268	8.8	1.9	1.9	chr9	70038166	70038638	(68356079)	+	(TGGAA)n	Simple_repeat	1	482	(0)	4082515
195	38.6	1.1	7.4	chr9	75904169	75904263	(62490454)	+	MIR3	SINE/MIR	16	104	(104)	4091650
4501	17.5	1.6	4.0	chr9	75904325	75905226	(62489491)	+	L1MB8	LINE/L1	5176	6063	(115)	4091651
2119	12.3	0.0	1.4	chr9	79219159	79219450	(59175267)	C	AluSx	SINE/Alu	(24)	288	1	4096912
463	32.3	5.2	5.2	chr9	79254853	79255084	(59139633)	C	MIRc	SINE/MIR	(14)	254	23	4096973
309	27.5	2.4	1.2	chr9	82482360	82482440	(55912277)	C	MIR	SINE/MIR	(179)	83	2	4101532
1263	23.1	4.1	7.2	chr9	91782904	91783304	(46611413)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	3	4115737
2034	13.8	1.0	12.3	chr9	109296930	109297367	(29097350)	+	MLT1B	LTR/ERVL-MaLR	1	388	(2)	4144197
14	14.7	0.0	3.1	chr9	121651595	121651626	(16743091)	+	GA-rich	Low_complexity	1	32	(0)	4167463
2154	10.2	0.7	0.3	chr9	128448392	128448695	(9946022)	C	AluSx3	SINE/Alu	(5)	306	2	4180551
1746	17.1	11.2	1.4	chr9	128448696	128448981	(9945736)	+	MLT1C	LTR/ERVL-MaLR	75	401	(66)	4180550
768	17.7	0.0	0.0	chr9	128448984	128449107	(9945610)	C	AluSx3	SINE/Alu	(4)	307	184	4180552
1317	18.7	3.9	4.2	chr9	129445889	129446200	(8948517)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	80	4182851
12	26.5	3.2	3.1	chr9	136410607	136410668	(1984049)	+	(AGCGGA)n	Simple_repeat	1	64	(0)	4194344
1326	25.7	5.0	13.1	chr9	136760821	136761260	(1633457)	+	MLT1C	LTR/ERVL-MaLR	2	412	(55)	4194763
26	0.0	0.0	0.0	chrX	11111356	11111380	(144929515)	+	(GGC)n	Simple_repeat	1	25	(0)	4377507
3147	25.1	7.0	4.3	chrX	23944783	23945156	(132095739)	+	HAL1	LINE/L1	2	396	(2111)	4398449
2456	16.1	1.7	6.9	chrX	23945157	23945649	(132095246)	+	MLT1C	LTR/ERVL-MaLR	1	467	(0)	4398450
3147	25.1	7.0	4.3	chrX	23945650	23946079	(132094816)	+	HAL1	LINE/L1	397	830	(1677)	4398449
1830	17.2	4.9	9.3	chrX	39751961	39752304	(116288591)	+	MLT1B	LTR/ERVL-MaLR	1	336	(54)	4421110
2592	5.3	0.0	0.0	chrX	39752305	39752603	(116288292)	+	AluYh3	SINE/Alu	2	300	(11)	4421111
1024	13.1	1.8	2.9	chrX	44300323	44300471	(111740424)	+	MLT1B	LTR/ERVL-MaLR	218	369	(21)	4428599
3772	14.9	1.0	7.9	chrX	44300472	44300830	(111740065)	+	LTR8	LTR/ERV1	1	312	(379)	4428600
365	27.2	14.4	3.9	chrX	73943786	73943965	(82096930)	+	MIRc	SINE/MIR	25	226	(42)	4464969
15	21.4	4.4	0.0	chrX	73944061	73944105	(82096790)	+	A-rich	Low_complexity	1	47	(0)	4464970
30	12.2	4.8	0.0	chrX	73944168	73944229	(82096666)	+	(ACGGCA)n	Simple_repeat	1	65	(0)	4464971
9135	24.1	2.7	5.3	chrX	83793863	83795928	(72244967)	+	L1M2c	LINE/L1	69	2078	(4771)	4475269
20	25.4	4.3	0.0	chrX	101931757	101931826	(54109069)	+	(GCC)n	Simple_repeat	1	73	(0)	4496657
12	15.8	9.5	0.0	chrX	101931826	101931867	(54109028)	+	(GGCA)n	Simple_repeat	1	46	(0)	4496658
29	3.2	0.0	0.0	chrX	101931878	101931909	(54108986)	+	(GCC)n	Simple_repeat	1	32	(0)	4496659
387	30.4	15.8	1.0	chrX	130206893	130207101	(25833794)	C	MIR	SINE/MIR	(13)	249	4	4536162
2246	10.4	0.3	1.0	chrX	130207365	130207661	(25833234)	C	AluSx	SINE/Alu	(17)	295	1	4536163
2626	13.0	2.8	2.1	chrX	130455317	130455741	(25585154)	+	MSTA	LTR/ERVL-MaLR	1	428	(0)	4536578
13	15.5	5.6	0.0	chrX	130622763	130622798	(25418097)	+	(TGTATA)n	Simple_repeat	1	38	(0)	4536849
2238	13.3	1.1	2.0	chrX	130622805	130623184	(25417711)	C	MLT2D	LTR/ERVL	(41)	526	5	4536850
1531	18.0	7.4	2.4	chrX	132523286	132523579	(23517316)	C	AluJr	SINE/Alu	(1)	311	2	4539463
6263	19.6	6.5	2.7	chrX	132523580	132524435	(23516460)	+	L1MC4	LINE/L1	6999	7891	(151)	4539459
333	21.9	3.0	0.0	chrY	10663511	10663574	(46563841)	C	AluYj4	SINE/Alu	(22)	289	224	4587921
6112	24.5	0.6	0.4	chrY	10939178	10940587	(46286828)	+	(TTCCA)n	Simple_repeat	5	1415	(0)	4588487
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638
1464	23.6	8.9	4.8	chrY	11281374	11281813	(45945602)	C	MER21C	LTR/ERVL	(22)	916	457	4589057
632	25.3	2.2	1.7	chrY	11282071	11282251	(45945164)	C	MER5A	DNA/hAT-Charlie	(0)	189	8	4589058
1081	32.1	12.4	1.6	chrY	11282268	11282912	(45944503)	+	L2	LINE/L2	916	1640	(1779)	4589056