212	29.0	2.0	1.8	chr1	2155082	2155347	(246801075)	+	(TGGTGA)n	Simple_repeat	1	266	(0)	2937
28	11.1	1.6	1.6	chr1	2155348	2155409	(246801013)	+	(GGTGATGAC)n	Simple_repeat	1	63	(0)	2938
212	29.0	2.0	1.8	chr1	2155410	2155848	(246800574)	+	(TGGTGA)n	Simple_repeat	6	439	(0)	2939
283	25.9	1.0	0.3	chr1	3025816	3026506	(245929916)	+	(ATG)n	Simple_repeat	1	698	(0)	3676
2480	7.4	0.0	0.0	chr1	6936711	6937006	(242019416)	+	AluY	SINE/Alu	5	300	(11)	9151
384	14.5	3.2	4.3	chr1	6937033	6937918	(242018504)	+	(CACCAT)n	Simple_repeat	1	914	(0)	9152
433	33.3	2.1	1.2	chr1	7498157	7500000	(241456422)	+	(TG)n	Simple_repeat	1	1883	(0)	9913
339	33.1	2.0	0.8	chr1	10661369	10662760	(238293662)	+	(AC)n	Simple_repeat	1	1420	(0)	16191
250	24.7	7.3	2.2	chr1	11657764	11657854	(237298568)	+	MER58C	DNA/hAT-Charlie	81	176	(39)	18176
492	26.4	3.2	1.4	chr1	11657857	11658026	(237298396)	C	MIRc	SINE/MIR	(49)	181	14	18177
22	0.0	0.0	0.0	chr1	16506392	16506415	(232450007)	+	(A)n	Simple_repeat	1	24	(0)	27656
264	9.1	0.0	0.0	chr1	16506444	16506476	(232449946)	C	U1	snRNA	(0)	165	133	27657
1606	22.1	11.8	6.0	chr1	16506477	16507011	(232449411)	C	LTR4	LTR/ERV1	(0)	596	27	27658
203	36.8	1.7	2.3	chr1	21875012	21875192	(227081230)	C	MIRb	SINE/MIR	(1)	261	86	38863
419	32.3	6.5	1.7	chr1	22470986	22471218	(226485204)	+	MamRep605	LTR?	564	808	(41)	40243
194	38.4	1.4	4.6	chr1	22834386	22834463	(226121959)	+	MIRb	SINE/MIR	79	154	(114)	41042
1067	19.8	2.8	4.5	chr1	22834464	22834642	(226121780)	C	MER58A	DNA/hAT-Charlie	(2)	222	45	41043
2347	10.6	0.3	0.3	chr1	22834643	22834954	(226121468)	+	AluSz	SINE/Alu	1	312	(0)	41044
1311	22.1	22.6	4.6	chr1	24562619	24563178	(224393244)	+	L1MEh	LINE/L1	263	932	(1303)	45171
2144	9.8	0.0	7.9	chr1	27116078	27116395	(221840027)	+	AluSx1	SINE/Alu	1	293	(19)	50963
208	12.2	10.6	4.2	chr1	29554162	29554870	(219401552)	+	(TG)n	Simple_repeat	1	784	(0)	56841
1221	23.8	2.0	1.0	chr1	30088801	30089102	(218867320)	C	ORSL-2a	DNA/hAT-Tip100	(10)	332	28	57823
111	38.4	3.9	0.3	chr1	30791247	30791832	(218164590)	+	GA-rich	Low_complexity	1	609	(0)	59077
45	4.8	1.4	4.1	chr1	31958216	31958287	(216998135)	+	(TTTC)n	Simple_repeat	1	73	(0)	61714
29	10.9	1.9	1.9	chr1	31958289	31958341	(216998081)	+	(CCTT)n	Simple_repeat	1	54	(0)	61715
2006	13.9	0.0	0.0	chr1	31958342	31958615	(216997807)	C	AluJb	SINE/Alu	(38)	274	1	61716
225	28.2	1.0	1.0	chr1	32272759	32273434	(216682988)	+	(TG)n	Simple_repeat	1	683	(0)	62488
46	9.7	0.0	0.0	chr1	33364360	33364425	(215591997)	+	(AC)n	Simple_repeat	1	66	(0)	64973
37	2.8	0.0	0.0	chr1	34165583	34165618	(214790804)	+	(CA)n	Simple_repeat	1	36	(0)	66329
18	20.9	0.0	0.0	chr1	34165622	34165665	(214790757)	+	(ACACAC)n	Simple_repeat	1	44	(0)	66330
2061	15.7	0.0	0.3	chr1	36328489	36328787	(212627635)	+	AluJb	SINE/Alu	1	298	(14)	70656
403	28.7	13.9	1.8	chr1	36328806	36329025	(212627397)	C	MIRb	SINE/MIR	(0)	268	18	70657
233	25.5	0.3	0.0	chr1	36762103	36762671	(212193751)	+	(CACACA)n	Simple_repeat	1	571	(0)	71525
587	31.0	14.6	5.8	chr1	39114624	39116377	(209840045)	C	L2c	LINE/L2	(10)	3377	1455	76118
34	10.7	0.0	0.0	chr1	39116380	39116431	(209839991)	+	(GT)n	Simple_repeat	1	52	(0)	76119
208	18.2	7.7	0.8	chr1	41888688	41889275	(207067147)	+	(AC)n	Simple_repeat	1	633	(0)	81624
309	27.9	9.2	0.1	chr1	43836825	43836942	(205119480)	C	MIR3	SINE/MIR	(99)	169	40	85015
1062	32.0	14.6	6.6	chr1	45875459	45876481	(203079941)	C	L2b	LINE/L2	(575)	2844	1710	88950
248	28.0	2.8	1.8	chr1	47591314	47592203	(201364219)	+	(GT)n	Simple_repeat	1	915	(0)	91931
140	27.5	0.3	0.3	chr1	48103455	48103825	(200852597)	+	(TG)n	Simple_repeat	1	372	(0)	92913
23240	6.5	0.9	1.5	chr1	48439741	48443307	(200513115)	+	HERV9N-int	LTR/ERV1	741	4742	(632)	93298
25	40.8	4.6	0.5	chr1	51741372	51741565	(197214857)	+	(TCTC)n	Simple_repeat	1	203	(0)	99358
273	12.5	9.4	0.0	chr1	51741566	51741613	(197214809)	C	AluJo	SINE/Alu	(12)	300	248	99359
1929	14.4	0.3	3.5	chr1	52502610	52502922	(196453500)	C	AluSx3	SINE/Alu	(7)	304	2	100981
777	26.7	7.8	1.8	chr1	52502963	52503191	(196453231)	C	MIRb	SINE/MIR	(8)	260	17	100982
251	29.4	19.6	5.0	chr1	53513447	53513765	(195442657)	+	L2b	LINE/L2	2999	3375	(0)	103225
281	25.8	14.3	1.5	chr1	54736267	54736357	(194220065)	C	L1MC4	LINE/L1	(1430)	6612	6503	105780
2025	16.4	0.3	0.3	chr1	54736358	54736669	(194219753)	C	AluJb	SINE/Alu	(0)	312	1	105783
825	12.4	3.6	2.4	chr1	65487711	65487875	(183468547)	C	L1MA3	LINE/L1	(0)	6305	6139	125874
226	14.6	3.2	1.1	chr1	65487876	65488313	(183468109)	+	(TCTT)n	Simple_repeat	1	452	(0)	125875
2237	14.6	2.2	0.6	chr1	80054238	80054588	(168901834)	+	LTR18A	LTR/ERVL	1	357	(0)	146674
310	34.1	13.7	0.5	chr1	83066004	83066212	(165890210)	+	MIR	SINE/MIR	12	252	(10)	150693
65	11.5	0.0	2.7	chr1	90201952	90202095	(158754327)	+	(AGGA)n	Simple_repeat	1	140	(0)	160994
13	28.4	3.1	9.6	chr1	90202096	90202111	(158754311)	+	GA-rich	Low_complexity	2	166	(0)	160995
17	19.5	0.0	0.0	chr1	94116906	94116936	(154839486)	+	(T)n	Simple_repeat	1	31	(0)	167311
23	20.4	0.0	4.7	chr1	94116939	94116955	(154839467)	+	(CCCT)n	Simple_repeat	1	17	(0)	167312
89	0.0	3.6	3.5	chr1	94116956	94117065	(154839357)	+	(CTTT)n	Simple_repeat	1	114	(0)	167313
23	20.4	0.0	4.7	chr1	94117066	94117111	(154839311)	+	(CCCT)n	Simple_repeat	2	45	(0)	167314
390	23.4	18.6	1.9	chr1	107670030	107670190	(141286232)	C	MIRc	SINE/MIR	(57)	211	18	185766
235	28.5	1.2	8.1	chr1	107670256	107670372	(141286050)	C	MIRb	SINE/MIR	(150)	118	7	185767
3139	8.8	0.5	0.2	chr1	109725517	109725947	(139230475)	+	LTR3	LTR/ERVK	1	432	(0)	189007
959	20.6	2.5	1.0	chr1	115504620	115504815	(133451607)	C	MER58A	DNA/hAT-Charlie	(0)	224	26	198284
521	25.4	14.3	3.7	chr1	116555907	116555975	(132400447)	C	MIR	SINE/MIR	(8)	254	188	199891
2475	7.5	0.7	0.0	chr1	116555976	116556281	(132400141)	+	AluSz	SINE/Alu	3	310	(2)	199892
615	24.9	14.8	3.6	chr1	116556282	116556428	(132399994)	C	MIR	SINE/MIR	(75)	187	11	199891
1597	0.0	0.0	0.0	chr1	146376807	146376970	(102579452)	+	U1	snRNA	1	164	(1)	212533
17	17.4	0.0	2.9	chr1	147540964	147540998	(101415424)	+	(CT)n	Simple_repeat	1	35	(0)	214257
115	0.0	2.8	0.0	chr1	147541071	147541178	(101415244)	+	(GA)n	Simple_repeat	1	111	(0)	214258
41	6.0	0.0	0.0	chr1	147541179	147541230	(101415192)	+	(TG)n	Simple_repeat	1	52	(0)	214259
20	16.6	6.8	3.9	chr1	147541295	147541367	(101415055)	+	GA-rich	Low_complexity	1	78	(0)	214260
1597	11.4	0.0	12.1	chr1	148387062	148387350	(100569072)	C	AluSx	SINE/Alu	(0)	312	59	215618
4716	8.8	1.7	2.5	chr1	155642182	155643219	(93313203)	C	MER11A	LTR/ERVK	(0)	1266	1	228475
983	33.2	8.2	3.5	chr1	168278844	168279735	(80676687)	+	L2b	LINE/L2	2436	3359	(67)	248112
44	6.3	0.0	0.0	chr1	169181365	169181415	(79775007)	+	(AC)n	Simple_repeat	1	51	(0)	249583
229	30.2	11.1	5.0	chr1	171139878	171139978	(77816444)	C	L2c	LINE/L2	(173)	3214	3107	252249
1004	25.9	0.0	0.0	chr1	174963654	174963877	(73992545)	+	MER58A	DNA/hAT-Charlie	1	224	(0)	258016
399	31.0	15.4	5.1	chr1	181127263	181127459	(67828963)	C	MIRb	SINE/MIR	(22)	246	26	267516
176	25.7	3.0	1.7	chr1	182236633	182237196	(66719226)	+	(AC)n	Simple_repeat	1	581	(0)	269069
414	29.8	12.3	1.7	chr1	182330226	182330399	(66626023)	+	MIRb	SINE/MIR	40	234	(34)	269275
1315	22.9	17.0	2.3	chr1	183045320	183046170	(65910252)	C	L1ME3F	LINE/L1	(180)	6063	5078	270485
236	23.5	3.4	9.6	chr1	183689826	183689919	(65266503)	C	L2c	LINE/L2	(12)	3375	3288	271518
409	30.5	4.1	7.5	chr1	200539969	200540195	(48416227)	+	MIRb	SINE/MIR	50	268	(0)	294477
1011	15.7	6.4	2.5	chr1	205972783	205975447	(42980975)	+	(CA)n	Simple_repeat	1	2768	(0)	304363
456	15.3	6.0	1.5	chr1	206003837	206004902	(42951520)	+	(AC)n	Simple_repeat	1	1130	(0)	304414
321	33.6	4.0	0.7	chr1	208325934	208326080	(40630342)	C	MamTip2	DNA/hAT-Tip100	(69)	236	85	307966
811	30.3	6.8	2.6	chr1	221284015	221284326	(27672096)	C	L4_A_Mam	LINE/RTE-X	(194)	4796	4471	327435
379	31.2	5.3	0.8	chr1	221284334	221284485	(27671937)	+	MIRb	SINE/MIR	2	167	(101)	327436
564	27.2	4.8	1.6	chr1	223403200	223403382	(25553040)	+	MIRb	SINE/MIR	45	233	(35)	330637
97	16.8	3.4	0.7	chr1	224172321	224172588	(24783834)	+	GA-rich	Low_complexity	1	275	(0)	331948
415	23.3	8.7	1.7	chr1	224666102	224666219	(24290203)	C	MIRc	SINE/MIR	(123)	145	19	332947
3239	16.1	5.7	0.2	chr1	225462619	225463184	(23493238)	+	LTR26	LTR/ERV1	5	603	(0)	334009
1994	7.9	4.7	0.8	chr1	225698225	225698490	(23257932)	+	AluSg7	SINE/Alu	21	297	(12)	334406
2259	13.0	11.5	4.4	chr1	225850295	225850726	(23105696)	+	LTR22B1	LTR/ERVK	1	472	(54)	334686
895	24.6	10.0	0.0	chr1	225981374	225981588	(22974834)	+	LTR16B	LTR/ERVL	1	239	(224)	334952
752	22.8	17.8	3.7	chr1	225981604	225981958	(22974464)	+	L1M4a1	LINE/L1	1351	1766	(813)	334953
819	27.6	1.9	0.0	chr1	226483075	226483284	(22473138)	C	MIRb	SINE/MIR	(52)	216	3	335991
3315	12.7	2.4	1.4	chr1	226541957	226542460	(22413962)	C	HERVL66-int	LTR/ERVL	(3820)	509	1	336083
101	17.2	2.9	3.2	chr1	226654890	226655132	(22301290)	+	GA-rich	Low_complexity	1	250	(0)	336241
1352	15.3	0.8	10.6	chr1	227736547	227736821	(21219601)	C	AluJo	SINE/Alu	(64)	248	1	337833
1448	17.9	6.7	0.6	chr1	227736834	227737154	(21219268)	C	LTR42	LTR/ERVL	(151)	344	3	337831
275	15.5	9.3	0.1	chr1	228042403	228043119	(20913303)	+	(GATG)n	Simple_repeat	1	784	(0)	338223
1046	26.8	10.6	1.6	chr1	228697429	228697915	(20258507)	+	ERVL-E-int	LTR/ERVL	1111	1638	(4076)	339065
101	23.7	6.9	2.7	chr1	228977723	228978170	(19978252)	+	(GT)n	Simple_repeat	1	479	(0)	339498
305	26.8	11.7	0.7	chr1	229060208	229060354	(19896068)	C	MIR	SINE/MIR	(5)	263	45	339620
119	13.8	0.0	0.5	chr1	229060371	229060563	(19895859)	+	(TG)n	Simple_repeat	1	193	(0)	339621
372	22.2	0.7	1.1	chr1	229220048	229220891	(19735531)	+	(TACCATC)n	Simple_repeat	1	850	(0)	339883
56	27.8	3.7	1.0	chr1	231216105	231216295	(17740127)	+	(TCTC)n	Simple_repeat	1	198	(0)	343119
67	20.3	0.6	3.1	chr1	233295855	233296013	(15660409)	+	(TTTC)n	Simple_repeat	1	160	(0)	346166
20	14.4	0.0	0.0	chr1	233295983	233296014	(15660408)	+	(T)n	Simple_repeat	1	32	(0)	346167
372	34.1	6.3	5.3	chr1	233936179	233936460	(15019962)	C	LTR89	LTR/ERVL?	(19)	860	576	347118
74	23.9	2.0	1.5	chr1	233936498	233936693	(15019729)	+	(CCT)n	Simple_repeat	1	200	(0)	347119
1952	16.8	0.3	1.0	chr1	233936694	233936990	(15019432)	C	AluJb	SINE/Alu	(17)	295	1	347120
74	16.6	0.0	0.0	chr1	234066699	234066829	(14889593)	+	(CTCT)n	Simple_repeat	1	131	(0)	347303
54	0.0	0.0	0.0	chr1	234066831	234066876	(14889546)	+	(CA)n	Simple_repeat	1	46	(0)	347304
120	26.9	3.0	1.0	chr1	234164078	234164449	(14791973)	+	(CTCT)n	Simple_repeat	1	383	(0)	347460
38	0.0	0.0	0.0	chr1	234491193	234491225	(14465197)	+	(AC)n	Simple_repeat	1	33	(0)	347951
23	12.6	0.0	0.0	chr1	234491226	234491260	(14465162)	+	(GA)n	Simple_repeat	1	35	(0)	347952
2016	13.0	2.0	9.2	chr1	234977954	234978029	(13978393)	C	MLT1B	LTR/ERVL-MaLR	(303)	87	38	348767
15	23.5	2.1	2.0	chr1	234978170	234978217	(13978205)	+	(TGAA)n	Simple_repeat	1	49	(0)	348769
132	5.0	8.4	1.6	chr1	236098335	236098572	(12857850)	+	(GGAAG)n	Simple_repeat	1	258	(0)	350998
38	34.9	2.1	5.9	chr1	236098573	236098599	(12857823)	+	GA-rich	Low_complexity	20	272	(0)	350999
651	20.3	3.0	2.3	chr1	236098664	236098794	(12857628)	+	MIR	SINE/MIR	7	138	(124)	351000
253	23.5	3.3	0.6	chr1	236101445	236102135	(12854287)	+	(TG)n	Simple_repeat	1	714	(0)	351005
272	30.1	15.8	0.0	chr1	237005604	237005736	(11950686)	+	L2a	LINE/L2	3269	3426	(0)	352629
34	3.0	0.0	0.0	chr1	237005748	237005781	(11950641)	+	(AC)n	Simple_repeat	1	34	(0)	352630
11228	12.2	2.3	0.2	chr1	237286561	237289326	(11667096)	C	L1PBa1	LINE/L1	(3755)	3107	255	353077
177	36.5	0.4	0.7	chr1	241306129	241306853	(7649569)	+	(CA)n	Simple_repeat	1	728	(0)	359096
3887	25.4	9.8	3.4	chr1	243590895	243592053	(5364369)	+	L1ME1	LINE/L1	162	1388	(5012)	362788
379	28.3	15.7	0.5	chr1	244239250	244239448	(4716974)	C	MIRb	SINE/MIR	(8)	260	26	363796
16	13.7	0.0	0.0	chr1	244239509	244239533	(4716889)	+	(GT)n	Simple_repeat	1	25	(0)	363797
27	6.1	0.0	0.0	chr1	244239533	244239567	(4716855)	+	(GA)n	Simple_repeat	1	35	(0)	363798
320	32.8	11.0	4.1	chr1	244239644	244239913	(4716509)	C	MamRTE1	LINE/RTE-BovB	(137)	3675	3385	363799
293	24.8	3.4	4.2	chr10	1498792	1499934	(132297488)	+	(TCATCAT)n	Simple_repeat	1	1182	(0)	372646
274	30.6	16.1	6.4	chr10	10728475	10728519	(123068903)	C	L2c	LINE/L2	(322)	3065	3021	386001
311	36.6	0.8	3.0	chr10	18607591	18607725	(115189697)	C	MER5A	DNA/hAT-Charlie	(49)	140	9	399357
264	30.3	1.5	0.0	chr10	18607741	18607806	(115189616)	+	MIRb	SINE/MIR	26	92	(176)	399358
324	28.2	18.6	0.0	chr10	18607870	18608000	(115189422)	+	MIR	SINE/MIR	102	262	(0)	399358
1591	13.9	7.9	1.8	chr10	21319022	21319295	(112478127)	C	AluJr	SINE/Alu	(17)	295	4	403399
85	34.0	1.6	2.4	chr10	23156751	23157120	(110640302)	+	A-rich	Low_complexity	1	376	(0)	406358
253	34.9	6.4	5.3	chr10	44326494	44326845	(89470577)	+	L2b	LINE/L2	2915	3288	(99)	434716
456	19.5	3.7	3.3	chr10	46525398	46526683	(87270739)	+	(CA)n	Simple_repeat	1	1334	(0)	437801
271	14.9	7.2	3.4	chr10	47894344	47895118	(85902304)	+	(CA)n	Simple_repeat	1	831	(0)	439771
1023	23.5	7.8	3.9	chr10	48384864	48385279	(85412143)	C	LTR56	LTR/ERV1	(0)	445	12	440481
15	10.0	2.8	5.4	chr10	72895553	72895588	(60901834)	+	GA-rich	Low_complexity	1	37	(0)	478238
2848	13.4	2.9	1.5	chr10	77233475	77233951	(56563471)	+	LTR3A	LTR/ERVK	1	484	(0)	485572
52	43.6	0.7	2.1	chr10	78230136	78230564	(55566858)	+	(CACCAC)n	Simple_repeat	1	432	(0)	487433
560	37.8	4.3	9.6	chr10	78547987	78548475	(55248947)	+	L2b	LINE/L2	2912	3373	(2)	488007
87	18.6	1.9	3.6	chr10	78548477	78548692	(55248730)	+	GA-rich	Low_complexity	1	220	(0)	488008
325	16.0	5.9	3.1	chr10	84186384	84187265	(49610157)	+	(TG)n	Simple_repeat	1	934	(0)	496452
290	16.8	4.8	4.9	chr10	84187266	84187272	(49610150)	+	(TGTGTGG)n	Simple_repeat	1	932	(0)	496453
59	0.0	0.0	0.0	chr10	86967151	86967200	(46830222)	+	(GT)n	Simple_repeat	1	50	(0)	500486
2377	15.2	7.4	0.9	chr10	87585968	87586432	(46210990)	C	LTR44	LTR/ERV1	(3)	516	19	501500
708	27.6	4.2	1.0	chr10	88093182	88093386	(45704036)	+	MIRb	SINE/MIR	9	220	(48)	502314
55	3.7	0.0	0.0	chr10	91609148	91609203	(42188219)	+	(TC)n	Simple_repeat	1	56	(0)	507574
35	12.3	0.0	0.0	chr10	91609204	91609249	(42188173)	+	(AC)n	Simple_repeat	1	46	(0)	507575
217	21.1	0.0	1.7	chr10	93542643	93542700	(40254722)	C	MIR3	SINE/MIR	(1)	207	151	511315
2630	6.6	1.0	0.0	chr10	118698143	118698443	(15098979)	C	AluSz	SINE/Alu	(8)	304	1	552448
527	27.5	4.5	7.7	chr10	118698444	118698611	(15098811)	+	MLT1G1	LTR/ERVL-MaLR	43	209	(382)	552447
859	22.9	7.9	0.5	chr10	118698624	118698834	(15098588)	+	MLT1G1	LTR/ERVL-MaLR	352	579	(0)	552447
414	28.4	8.7	3.0	chr10	121169563	121169795	(12627627)	C	MIRb	SINE/MIR	(10)	252	2	556737
731	25.1	7.1	2.8	chr10	121497385	121497667	(12299755)	C	L1ME3Cz	LINE/L1	(314)	683	388	557259
1091	20.3	1.9	0.5	chr10	121497673	121497885	(12299537)	+	MER58A	DNA/hAT-Charlie	3	218	(6)	557260
249	23.5	4.7	1.2	chr10	121497892	121497973	(12299449)	C	L1ME3Cz	LINE/L1	(606)	391	307	557259
377	23.9	6.6	1.3	chr10	125768212	125768349	(8029073)	C	MIR1_Amn	SINE/MIR	(39)	169	30	563979
309	32.3	4.2	6.6	chr10	128438264	128438535	(5358887)	C	L2c	LINE/L2	(43)	3344	3080	567438
147	27.6	2.9	2.3	chr10	128438537	128439048	(5358374)	+	(TG)n	Simple_repeat	1	527	(0)	567439
279	28.6	6.0	1.6	chr10	133359955	133360082	(437340)	+	Charlie22a	DNA/hAT-Charlie	60	193	(298)	572436
402	13.4	7.6	1.2	chr11	2187174	2188103	(132898519)	+	(CA)n	Simple_repeat	1	1001	(0)	575513
186	33.1	1.2	1.4	chr11	2583977	2584732	(132501890)	+	(TGTG)n	Simple_repeat	1	765	(0)	575950
195	29.2	4.3	7.3	chr11	11609013	11609108	(123477514)	+	L2c	LINE/L2	3257	3349	(38)	589468
711	22.4	4.8	0.9	chr11	11609165	11609450	(123477172)	+	L2a	LINE/L2	2830	3129	(297)	589469
283	26.7	11.0	5.2	chr11	13030674	13030886	(122055736)	+	L2c	LINE/L2	2931	3157	(230)	591686
231	28.8	0.0	0.0	chr11	13030900	13030958	(122055664)	C	L2b	LINE/L2	(3)	3372	3314	591687
2069	14.8	1.0	0.0	chr11	16843658	16843961	(118242661)	+	AluSx	SINE/Alu	1	307	(5)	597564
1130	28.2	3.0	0.7	chr11	26715363	26715655	(108370967)	+	LTR16C	LTR/ERVL	190	489	(0)	612861
148	30.9	0.2	0.2	chr11	44978231	44978679	(90107943)	+	(GT)n	Simple_repeat	1	450	(0)	641238
681	0.0	0.0	0.0	chr11	59550629	59550701	(75535921)	C	tRNA-Val-GTA	tRNA	(3)	73	1	656945
345	29.4	14.1	2.8	chr11	61141548	61141729	(73944893)	+	MIRb	SINE/MIR	26	231	(37)	659565
2683	13.7	1.1	0.9	chr11	62049779	62050221	(73036401)	C	LTR3A	LTR/ERVK	(40)	444	1	661363
3166	10.9	0.0	0.5	chr11	62251757	62252189	(72834433)	+	LTR3	LTR/ERVK	1	431	(1)	661741
180	32.3	1.6	0.0	chr11	67022517	67022578	(68064044)	+	L2a	LINE/L2	3358	3420	(6)	670746
577	22.6	12.8	1.0	chr11	67022616	67022807	(68063815)	+	MIRb	SINE/MIR	20	237	(31)	670747
1498	16.5	11.2	0.4	chr11	69680515	69680769	(65405853)	+	AluJr4	SINE/Alu	1	286	(26)	675482
139	17.8	0.0	0.4	chr11	69680770	69681024	(65405598)	+	(CA)n	Simple_repeat	1	255	(0)	675483
284	22.2	1.8	2.0	chr11	71068795	71069513	(64017109)	+	(CCATCA)n	Simple_repeat	1	732	(0)	677649
184	31.9	0.0	6.8	chr11	75476212	75476285	(59610337)	C	MIR1_Amn	SINE/MIR	(62)	168	100	686128
186	31.7	15.1	2.2	chr11	75476305	75476488	(59610134)	C	MIRb	SINE/MIR	(41)	227	16	686129
410	28.1	1.7	0.9	chr11	77506939	77507053	(57579569)	+	L2a	LINE/L2	3305	3420	(6)	690053
26226	2.5	0.4	0.0	chr11	94232525	94238528	(40848094)	C	L1PA2	LINE/L1	(3)	6152	124	716864
18300	3.7	0.3	0.1	chr11	94238529	94241278	(40845344)	C	L1PA4	LINE/L1	(372)	5782	3028	716863
241	33.3	1.6	0.8	chr11	100546782	100546908	(34539714)	C	MER91B	DNA/hAT-Tip100	(62)	128	1	725145
2159	13.4	4.8	2.5	chr11	100546957	100547360	(34539262)	+	MSTA	LTR/ERVL-MaLR	1	414	(14)	725146
2942	10.7	0.7	0.7	chr11	103913925	103914366	(31172256)	C	LTR3A	LTR/ERVK	(38)	446	5	730117
249	27.7	1.2	3.5	chr11	110480058	110480143	(24606479)	C	MLT1J1	LTR/ERVL-MaLR	(20)	424	341	739911
233	25.0	3.8	3.8	chr11	120077722	120077800	(15008822)	C	X7C_LINE	LINE/CR1	(86)	150	72	755937
48	0.0	0.0	0.0	chr11	120077802	120077842	(15008780)	+	(AC)n	Simple_repeat	1	41	(0)	755938
1981	12.0	0.0	3.4	chr11	120077853	120078144	(15008478)	C	AluSx	SINE/Alu	(30)	282	1	755939
3292	8.5	0.7	0.7	chr11	123334802	123335241	(11751381)	C	LTR3A	LTR/ERVK	(40)	444	5	761343
19	4.3	0.0	0.0	chr11	124861946	124861969	(10224653)	+	(AC)n	Simple_repeat	1	24	(0)	763690
31	0.0	0.0	0.0	chr12	1924796	1924829	(131350480)	+	(GT)n	Simple_repeat	1	34	(0)	781437
50	2.2	0.0	0.0	chr12	1924830	1924876	(131350433)	+	(GA)n	Simple_repeat	1	47	(0)	781438
166	28.6	0.2	0.2	chr12	5796126	5796581	(127478728)	+	(CA)n	Simple_repeat	1	457	(0)	787541
1959	15.8	0.0	0.0	chr12	11852905	11853195	(121422114)	+	AluJb	SINE/Alu	1	291	(21)	797103
12	13.1	2.7	5.3	chr12	11853388	11853424	(121421885)	+	(CTTTCC)n	Simple_repeat	1	38	(0)	797104
2417	9.2	0.3	1.0	chr12	25275894	25276207	(107999102)	+	AluSp	SINE/Alu	1	312	(1)	816248
7862	20.9	10.8	3.1	chr12	29350249	29352382	(103922927)	C	Cheshire	DNA/hAT-Charlie	(2)	2418	76	822250
2380	26.3	3.7	2.8	chr12	29957072	29957970	(103317339)	+	L1M5	LINE/L1	2248	3155	(2991)	823076
224	22.6	1.6	3.1	chr12	29958009	29958072	(103317237)	+	MIR	SINE/MIR	200	262	(0)	823073
5556	10.6	0.4	0.0	chr12	31026265	31027048	(102248261)	+	HERVK3-int	LTR/ERVK	6410	7196	(6)	824565
2749	11.3	2.0	2.2	chr12	31027054	31027497	(102247812)	+	LTR3A	LTR/ERVK	1	443	(41)	824565
46	4.1	0.0	0.0	chr12	31636903	31636953	(101638356)	+	(TTGG)n	Simple_repeat	1	51	(0)	825692
2188	9.3	0.7	0.0	chr12	31636954	31637232	(101638077)	C	AluSx1	SINE/Alu	(31)	281	1	825693
8906	12.1	4.5	2.4	chr12	31849053	31851541	(101423768)	+	MER41-int	LTR/ERV1	2333	5856	(407)	826206
2384	8.7	1.0	0.0	chr12	32653762	32654059	(100621250)	+	AluY	SINE/Alu	1	301	(10)	827853
5122	19.9	8.5	7.7	chr12	32654060	32654095	(100621214)	+	L1MC4	LINE/L1	7551	7570	(472)	827850
2204	9.4	2.4	0.0	chr12	32654096	32654382	(100620927)	+	AluSg4	SINE/Alu	2	295	(15)	827854
226	17.7	3.6	0.2	chr12	34236015	34236486	(99038823)	+	(ATCACC)n	Simple_repeat	1	489	(0)	829972
1094	17.5	13.6	0.0	chr12	43436368	43436647	(89838662)	C	MER33	DNA/hAT-Charlie	(0)	324	1	838078
1107	30.2	4.4	7.6	chr12	43436660	43437251	(89838058)	+	L1MEd	LINE/L1	483	1054	(1453)	838077
342	27.7	5.9	2.6	chr12	45912871	45912985	(87362324)	+	MIRb	SINE/MIR	128	246	(22)	841582
7037	12.8	6.9	1.8	chr12	56835485	56837237	(76438072)	C	MER50-int	LTR/ERV1	(5362)	1843	1	860347
37	0.0	0.0	0.0	chr12	57112147	57112178	(76163131)	+	(AC)n	Simple_repeat	1	32	(0)	860716
50	0.0	4.0	0.0	chr12	57112214	57112263	(76163046)	+	(CA)n	Simple_repeat	1	52	(0)	860717
675	31.5	15.1	3.5	chr12	66813450	66813938	(66461371)	C	L2a	LINE/L2	(129)	3297	2744	874940
246	21.5	10.8	5.3	chr12	66900782	66900894	(66374415)	C	MLT1J	LTR/ERVL-MaLR	(386)	126	7	875075
891	28.9	3.9	0.7	chr12	67108122	67108420	(66166889)	C	L1M2	LINE/L1	(6535)	314	6	875412
34	7.0	0.0	0.0	chr12	76144372	76144416	(57130893)	+	(TGTG)n	Simple_repeat	1	45	(0)	888729
205	23.9	23.3	3.2	chr12	103842368	103842462	(29432847)	C	MIRb	SINE/MIR	(8)	260	141	931391
340	21.9	0.7	0.4	chr12	107528773	107529497	(25745812)	+	(TGATGA)n	Simple_repeat	1	730	(0)	938356
387	31.6	4.3	4.3	chr12	109504109	109504135	(23771174)	C	L2	LINE/L2	(710)	2709	2683	942651
1012	19.7	2.7	3.2	chr12	109504136	109504355	(23770954)	C	MER20	DNA/hAT-Charlie	(0)	219	1	942652
387	31.6	4.3	4.3	chr12	109504356	109504562	(23770747)	C	L2	LINE/L2	(737)	2682	2475	942651
29	11.7	2.1	0.0	chr12	114355454	114355500	(18919809)	+	(CT)n	Simple_repeat	1	48	(0)	953544
216	23.1	3.0	0.2	chr12	115177779	115178320	(18096989)	+	(CATCAC)n	Simple_repeat	1	558	(0)	955464
678	17.5	3.3	2.5	chr12	116916617	116916736	(16358573)	+	FLAM_A	SINE/Alu	1	121	(21)	959285
447	20.4	21.0	0.0	chr12	116916738	116916884	(16358425)	C	MLT1H	LTR/ERVL-MaLR	(29)	520	335	959286
23	3.7	0.0	0.0	chr12	116916885	116916912	(16358397)	+	(TG)n	Simple_repeat	1	28	(0)	959287
17	5.0	0.0	0.0	chr12	116916912	116916932	(16358377)	+	(GA)n	Simple_repeat	1	21	(0)	959288
405	25.0	14.0	5.3	chr12	116917011	116917179	(16358130)	C	MLT1H	LTR/ERVL-MaLR	(303)	186	1	959286
13	14.0	4.7	4.4	chr12	120091574	120091616	(13183693)	+	G-rich	Low_complexity	1	45	(0)	966214
748	26.2	2.3	6.2	chr12	120647210	120647386	(12627923)	C	MIRb	SINE/MIR	(24)	244	73	967589
20	21.7	0.0	3.5	chr12	130716504	130716560	(2558749)	+	G-rich	Low_complexity	1	57	(0)	987101
28	21.6	0.0	0.0	chr12	130716611	130716666	(2558643)	+	(AC)n	Simple_repeat	1	56	(0)	987102
1751	12.9	1.8	4.7	chr12	132131221	132131743	(1143566)	+	LTR3A	LTR/ERVK	5	475	(9)	989125
1243	6.6	4.5	8.1	chr12	132155622	132158569	(1116740)	+	(AC)n	Simple_repeat	1	3082	(0)	989142
404	25.7	1.1	1.0	chr12	132217116	132218162	(1057147)	+	(CATC)n	Simple_repeat	1	1059	(0)	989228
8189	4.3	0.7	1.4	chr12	132252897	132253722	(1021587)	C	LTR13A	LTR/ERVK	(133)	833	1	989261
234	27.7	0.0	6.0	chr12	132253723	132253747	(1021562)	+	Tigger15a	DNA/TcMar-Tigger	615	635	(80)	989260
276	23.9	0.0	2.7	chr12	132253905	132253977	(1021332)	C	MER58A	DNA/hAT-Charlie	(122)	102	32	989263
2026	11.7	4.3	0.3	chr12	132254019	132254309	(1021000)	C	AluSq2	SINE/Alu	(10)	303	1	989264
450	32.3	0.7	2.1	chr12	132950321	132951996	(323313)	+	(CA)n	Simple_repeat	1	1688	(0)	990224
728	16.0	6.0	3.4	chr13	20392371	20394411	(93969917)	+	(CA)n	Simple_repeat	1	2164	(0)	994197
2877	10.1	1.2	2.3	chr13	20911064	20911491	(93452837)	+	LTR3	LTR/ERVK	1	423	(9)	995092
161	8.8	6.9	2.3	chr13	27907466	27907785	(86456543)	+	(TG)n	Simple_repeat	1	342	(0)	1005729
259	39.0	0.0	0.0	chr13	31538793	31538892	(82825436)	C	LTR101_Mam	LTR/ERVL	(580)	249	150	1011472
334	26.7	1.1	13.1	chr13	33434761	33434859	(80929469)	C	L2b	LINE/L2	(1)	3386	3289	1014293
59	4.0	0.0	1.3	chr13	33434866	33434944	(80929384)	+	(AAGG)n	Simple_repeat	1	79	(0)	1014294
219	33.3	11.0	0.7	chr13	33434956	33435094	(80929234)	C	L2b	LINE/L2	(181)	3245	3091	1014293
50	31.3	4.2	3.4	chr13	35766689	35766923	(78597405)	+	(CCTT)n	Simple_repeat	1	236	(0)	1017619
31	2.8	2.7	0.0	chr13	35766924	35766960	(78597368)	+	(TCCT)n	Simple_repeat	1	38	(0)	1017620
50	31.3	4.2	3.4	chr13	35766961	35767007	(78597321)	+	(CCTT)n	Simple_repeat	1	48	(0)	1017621
407	32.7	15.4	0.5	chr13	39159354	39159574	(75204754)	+	MIR	SINE/MIR	3	262	(0)	1022233
49	26.3	4.3	3.2	chr13	40385420	40385626	(73978702)	+	GA-rich	Low_complexity	1	216	(0)	1024032
3841	13.3	2.2	13.5	chr13	41148180	41148942	(73215386)	+	LTR76	LTR/ERV1	1	675	(0)	1025343
1137	17.6	0.0	5.8	chr13	41148943	41149024	(73215304)	+	AluJo	SINE/Alu	214	294	(18)	1025342
749	18.6	1.3	6.6	chr13	41149030	41149196	(73215132)	C	L1MD	LINE/L1	(2037)	4109	3952	1025337
4670	7.5	4.7	4.2	chr13	45133289	45133959	(69230369)	+	LTR76	LTR/ERV1	1	675	(0)	1031660
1714	25.0	10.7	8.0	chr13	45133960	45134070	(69230258)	C	L2a	LINE/L2	(2401)	1018	904	1031654
50	0.0	0.0	0.0	chr13	51315320	51315362	(63048966)	+	(AC)n	Simple_repeat	1	43	(0)	1041388
3392	16.1	4.8	1.9	chr13	78802921	78803288	(35561040)	C	L1MC5	LINE/L1	(1082)	6480	6094	1078057
12735	15.1	3.0	3.6	chr13	78803289	78803424	(35560904)	+	L1MA4	LINE/L1	2868	2997	(3146)	1078059
2289	10.7	0.7	0.0	chr13	98387019	98387316	(15977012)	+	AluSx	SINE/Alu	1	300	(12)	1104600
292	34.6	2.7	0.0	chr13	98507461	98507567	(15856761)	+	MIR3	SINE/MIR	98	207	(1)	1104738
100	37.6	0.6	1.4	chr13	110108425	110108922	(4255406)	+	(GT)n	Simple_repeat	1	501	(0)	1120904
3341	7.5	0.8	13.0	chr13	110965260	110965842	(3398486)	+	LTR10F	LTR/ERV1	1	511	(0)	1121994
31	1.3	3.9	11.3	chr13	111590150	111590251	(2774077)	+	(GATG)n	Simple_repeat	1	106	(0)	1122696
326	35.6	13.2	3.3	chr13	112849679	112849861	(1514467)	C	L2c	LINE/L2	(0)	3387	3172	1123991
2325	10.7	6.6	0.8	chr13	113157676	113158034	(1206294)	+	THE1D	LTR/ERVL-MaLR	1	381	(0)	1124259
556	25.8	5.6	0.0	chr13	113158054	113158204	(1206124)	+	MER58A	DNA/hAT-Charlie	8	167	(57)	1124260
28	25.2	2.2	2.1	chr13	113158216	113158306	(1206022)	+	(CTCC)n	Simple_repeat	1	93	(0)	1124261
281	17.4	4.3	3.2	chr13	113774499	113775247	(589081)	+	(CACACAC)n	Simple_repeat	1	781	(0)	1125020
573	24.5	0.4	0.1	chr13	113965545	113966825	(397503)	+	(ATGATG)n	Simple_repeat	1	1286	(0)	1125168
90	18.8	6.8	3.3	chr13	114227588	114227896	(136432)	+	(TG)n	Simple_repeat	1	330	(0)	1125372
3114	15.0	4.5	0.2	chr14	25108760	25109267	(81934451)	C	MER70C	LTR/ERVL	(0)	531	1	1135102
2579	9.7	0.0	0.3	chr14	55547151	55547458	(51496260)	+	AluSx1	SINE/Alu	2	308	(4)	1177902
1738	7.8	0.0	5.0	chr14	55599464	55599721	(51443997)	C	AluSx1	SINE/Alu	(11)	301	57	1178001
2408	8.8	0.0	0.0	chr14	59594899	59595192	(47448526)	C	AluSg	SINE/Alu	(16)	294	1	1183933
1285	28.7	9.8	9.0	chr14	69008471	69009041	(38034677)	+	L1MEd	LINE/L1	10	573	(6513)	1198678
483	32.9	4.7	6.2	chr14	69716324	69716582	(37327136)	C	MIR	SINE/MIR	(8)	260	6	1200063
663	15.4	0.0	13.4	chr14	72962348	72962496	(34081222)	+	AluJo	SINE/Alu	1	129	(183)	1205165
16	12.6	0.0	0.0	chr14	72962497	72962521	(34081197)	+	(CA)n	Simple_repeat	1	25	(0)	1205166
1964	8.0	5.1	1.5	chr14	72962522	72962784	(34080934)	C	AluSx1	SINE/Alu	(39)	273	1	1205167
367	33.5	5.6	4.7	chr14	73772422	73772634	(33271084)	C	L1ME4a	LINE/L1	(217)	5907	5693	1207034
289	26.5	5.5	6.4	chr14	74954093	74954201	(32089517)	+	MIR3	SINE/MIR	69	176	(32)	1209461
24331	8.8	1.7	0.6	chr14	94065491	94071367	(12972351)	+	L1PB1	LINE/L1	252	6220	(647)	1240561
621	20.1	4.1	1.8	chr14	94889392	94890935	(12152783)	+	(GT)n	Simple_repeat	1	1585	(0)	1242059
225	29.5	3.9	1.6	chr14	95291821	95291944	(11751774)	+	L1ME4a	LINE/L1	5787	5913	(211)	1242733
481	30.3	3.9	2.8	chr14	95291965	95292144	(11751574)	C	MIR	SINE/MIR	(3)	259	78	1242734
111	22.3	2.6	2.6	chr14	101399783	101400086	(5643632)	+	GA-rich	Low_complexity	1	312	(0)	1253101
120	8.7	2.9	2.8	chr14	101625794	101626039	(5417679)	+	(TGGA)n	Simple_repeat	1	253	(0)	1253415
329	33.9	6.2	1.1	chr14	103140877	103141058	(3902660)	C	L2	LINE/L2	(2094)	1325	1134	1256260
1302	12.2	19.9	0.0	chr14	103204698	103204854	(3838864)	+	AluJr	SINE/Alu	7	221	(91)	1256365
3864	14.2	1.2	7.8	chr14	103204855	103205577	(3838141)	C	LTR76	LTR/ERV1	(0)	675	1	1256366
707	24.3	4.9	1.0	chr14	105568893	105571171	(1472547)	+	(CA)n	Simple_repeat	1	2390	(0)	1259850
153	18.8	5.5	2.6	chr15	22251361	22251796	(79739393)	+	(CA)n	Simple_repeat	1	460	(0)	1265530
46	17.7	4.3	4.1	chr15	22251798	22251937	(79739252)	+	(GTATGTG)n	Simple_repeat	1	146	(0)	1265531
336	28.1	1.7	7.3	chr15	22251950	22252072	(79739117)	+	HAL1b	LINE/L1	2306	2421	(0)	1265532
206	26.9	5.6	0.0	chr15	41241366	41241432	(60749757)	C	MIR	SINE/MIR	(1)	261	191	1292864
367	24.7	4.5	0.0	chr15	44028995	44029079	(57962110)	+	L2a	LINE/L2	3338	3426	(0)	1298071
238	35.5	13.2	3.0	chr15	57459591	57460401	(44530788)	C	L2	LINE/L2	(645)	2774	1868	1318726
2147	13.7	4.5	0.8	chr15	57460465	57460825	(44530364)	C	THE1C	LTR/ERVL-MaLR	(0)	375	1	1318727
2334	10.5	0.0	2.0	chr15	58755773	58756077	(43235112)	C	AluSz	SINE/Alu	(12)	300	2	1320732
15	21.5	1.6	6.5	chr15	61038484	61038544	(40952645)	+	(CAGT)n	Simple_repeat	1	62	(0)	1324698
377	30.1	3.1	3.5	chr15	61038772	61038950	(40952239)	C	MIR3	SINE/MIR	(35)	173	3	1324699
1150	25.1	7.8	5.8	chr15	62365653	62365895	(39625294)	C	LTR33A_	LTR/ERVL	(104)	427	160	1326774
984	25.4	0.0	4.5	chr15	62365916	62366179	(39625010)	+	L1PBa	LINE/L1	1102	1353	(5510)	1326776
12	12.2	3.7	0.0	chr15	63437093	63437119	(38554070)	+	A-rich	Low_complexity	1	28	(0)	1328553
1904	16.4	1.7	0.0	chr15	66817836	66818128	(35173061)	C	AluJb	SINE/Alu	(13)	299	2	1335507
2343	9.6	0.0	0.0	chr15	66818138	66818428	(35172761)	C	AluY	SINE/Alu	(20)	291	1	1335508
45	26.8	2.7	1.3	chr15	66993252	66993427	(34997762)	+	GA-rich	Low_complexity	1	178	(0)	1335842
680	22.1	13.2	1.0	chr15	70258373	70258578	(31732611)	+	MIR	SINE/MIR	7	241	(21)	1341808
385	30.0	10.7	8.3	chr15	70398074	70398545	(31592644)	C	MLT1O	LTR/ERVL-MaLR	(0)	542	58	1342073
36	0.0	0.0	0.0	chr15	70398549	70398579	(31592610)	+	(GT)n	Simple_repeat	1	31	(0)	1342074
21	4.0	0.0	0.0	chr15	70398580	70398605	(31592584)	+	(AG)n	Simple_repeat	1	26	(0)	1342075
224	14.5	4.8	5.8	chr15	70558586	70559230	(31431959)	+	(CA)n	Simple_repeat	1	676	(0)	1342368
862	29.0	14.9	1.6	chr15	72136018	72136448	(29854741)	+	L4_A_Mam	LINE/RTE-X	4400	4897	(93)	1344966
238	29.0	1.1	2.1	chr15	72916930	72917024	(29074165)	+	MER5A1	DNA/hAT-Charlie	17	110	(56)	1346318
739	23.5	2.1	2.1	chr15	72917167	72917458	(29073731)	+	L1ME4b	LINE/L1	5602	5818	(306)	1346319
462	24.2	11.5	5.6	chr15	72968363	72968664	(29022525)	C	Tigger16a	DNA/TcMar-Tigger	(100)	857	536	1346389
315	33.9	10.0	1.1	chr15	72968847	72969028	(29022161)	+	MIRb	SINE/MIR	46	245	(23)	1346390
340	16.9	0.2	0.0	chr15	77885434	77886029	(24105160)	+	(CA)n	Simple_repeat	1	597	(0)	1354845
367	26.1	14.7	2.0	chr15	78536040	78536250	(23454939)	C	MIRc	SINE/MIR	(0)	262	9	1356128
13	4.3	3.9	3.7	chr15	78536268	78536293	(23454896)	+	(CTCTC)n	Simple_repeat	1	27	(0)	1356129
42	7.8	0.0	0.0	chr15	78536299	78536352	(23454837)	+	(AC)n	Simple_repeat	1	54	(0)	1356130
312	18.2	13.5	1.3	chr15	80033463	80033540	(21957649)	C	MER81	DNA/hAT-Blackjack	(24)	90	2	1358833
209	36.6	1.2	0.0	chr15	83127917	83127998	(18863191)	+	L2b	LINE/L2	3282	3364	(11)	1364104
1841	20.7	9.6	0.2	chr15	83929203	83929618	(18061571)	C	MLT1C	LTR/ERVL-MaLR	(8)	459	1	1365377
59	22.6	0.0	0.0	chr15	83929682	83929812	(18061377)	+	(ACACAG)n	Simple_repeat	1	131	(0)	1365378
221	26.4	4.4	4.4	chr15	83929825	83929915	(18061274)	+	L2c	LINE/L2	2975	3065	(322)	1365379
2325	17.8	2.6	2.4	chr15	95742487	95742942	(6248247)	C	MLT1D	LTR/ERVL-MaLR	(15)	490	34	1384873
1456	10.8	1.9	0.0	chr16	588336	588539	(89749806)	+	AluJb	SINE/Alu	88	295	(17)	1394981
264	12.2	5.3	2.5	chr16	977814	978374	(89359971)	+	(AC)n	Simple_repeat	1	591	(0)	1395371
1055	8.0	3.9	2.8	chr16	1032545	1034717	(89303628)	+	(ATCC)n	Simple_repeat	1	2258	(0)	1395429
265	23.9	2.4	0.1	chr16	9191330	9191988	(81146357)	+	(ATG)n	Simple_repeat	1	675	(0)	1410811
505	28.3	7.7	1.1	chr16	11319702	11319755	(79018590)	+	MIRb	SINE/MIR	159	226	(42)	1415402
1033	18.5	4.2	0.5	chr16	12229915	12230120	(78108225)	C	MER58A	DNA/hAT-Charlie	(0)	224	11	1417518
19	19.7	0.0	2.1	chr16	12803887	12803934	(77534411)	+	G-rich	Low_complexity	1	48	(0)	1418653
391	23.3	5.0	6.3	chr16	14324740	14324806	(76013539)	C	L1ME4b	LINE/L1	(467)	425	359	1421860
1604	15.5	2.8	1.4	chr16	14324807	14325112	(76013233)	C	AluJb	SINE/Alu	(0)	312	1	1421861
1847	15.8	1.0	2.5	chr16	15792718	15793034	(74545311)	C	AluSz	SINE/Alu	(0)	312	1	1425232
517	28.8	0.0	2.3	chr16	27526053	27526226	(62812119)	C	HAL1	LINE/L1	(1743)	764	595	1451302
522	32.3	7.5	4.3	chr16	27526488	27526836	(62811509)	C	HAL1	LINE/L1	(2140)	367	7	1451302
480	19.1	6.1	0.1	chr16	27789066	27790283	(62548062)	+	(ATGG)n	Simple_repeat	1	1292	(0)	1451932
606	12.8	6.5	0.5	chr16	28088779	28090021	(62248324)	+	(AC)n	Simple_repeat	1	1324	(0)	1452647
196	26.0	3.9	0.0	chr16	28585938	28585987	(61752358)	+	MIRc	SINE/MIR	60	111	(157)	1453917
823	21.0	0.6	5.7	chr16	28586001	28586176	(61752169)	+	AluJr4	SINE/Alu	5	171	(141)	1453918
3478	12.0	7.8	2.0	chr16	29943444	29943749	(60394596)	+	LTR19B	LTR/ERV1	240	580	(0)	1456931
2319	7.5	1.4	0.7	chr16	30008511	30008804	(60329541)	C	AluSz	SINE/Alu	(15)	297	2	1457055
248	7.3	7.1	0.6	chr16	30045246	30045752	(60292593)	+	(GT)n	Simple_repeat	1	543	(0)	1457143
229	33.3	18.4	0.0	chr16	30178643	30178810	(60159535)	C	MIRb	SINE/MIR	(35)	233	28	1457472
2426	8.5	0.7	0.0	chr16	30426170	30426474	(59911871)	C	AluY	SINE/Alu	(4)	307	1	1458002
1605	10.4	0.9	0.0	chr16	30426477	30426687	(59911658)	C	AluSx1	SINE/Alu	(15)	297	85	1458003
2372	10.0	0.0	0.3	chr16	30426688	30426998	(59911347)	C	AluSx	SINE/Alu	(0)	312	3	1458004
2928	6.0	0.3	0.5	chr16	30440557	30440927	(59897418)	C	L1PA8	LINE/L1	(2)	6170	5801	1458044
2488	7.0	0.0	0.0	chr16	30440932	30441231	(59897114)	C	AluY	SINE/Alu	(10)	301	2	1458045
2825	10.2	0.7	5.8	chr16	30841338	30841673	(59496672)	+	LTR3A	LTR/ERVK	1	325	(159)	1458997
436	7.4	14.5	0.5	chr16	33774036	33775105	(56563240)	+	A-rich	Low_complexity	1	1225	(0)	1463181
314	25.4	4.8	1.1	chr16	47854089	47855187	(42483158)	+	(CA)n	Simple_repeat	1	1152	(0)	1467721
99	27.3	4.1	3.7	chr16	53042154	53042591	(37295754)	+	(CCCT)n	Simple_repeat	1	456	(0)	1477083
54	39.1	2.0	4.3	chr16	53042592	53042605	(37295740)	+	(TCCCCC)n	Simple_repeat	4	464	(0)	1477084
69	23.5	2.1	1.6	chr16	55201399	55201584	(35136761)	+	(CTTC)n	Simple_repeat	1	190	(0)	1480964
241	31.6	8.9	1.1	chr16	55846897	55847085	(34491260)	C	MIRb	SINE/MIR	(35)	233	23	1482108
112	18.8	6.5	0.0	chr16	55847136	55847414	(34490931)	+	(CT)n	Simple_repeat	1	297	(0)	1482109
381	21.7	2.1	0.3	chr16	57407525	57408388	(32929957)	+	(CCAT)n	Simple_repeat	1	882	(0)	1485019
133	13.0	2.3	2.9	chr16	57628843	57629108	(32709237)	+	(AGTGTG)n	Simple_repeat	1	272	(0)	1485455
151	12.2	6.9	1.7	chr16	57912568	57912900	(32425445)	+	(TG)n	Simple_repeat	1	356	(0)	1486045
15	21.2	2.2	0.0	chr16	69071996	69072026	(21266319)	+	GA-rich	Low_complexity	1	32	(0)	1505018
49	0.0	0.0	0.0	chr16	69072027	69072068	(21266277)	+	(GT)n	Simple_repeat	1	42	(0)	1505019
15	21.2	2.2	0.0	chr16	69072069	69072081	(21266264)	+	GA-rich	Low_complexity	33	45	(0)	1505020
18	4.5	0.0	0.0	chr16	69072084	69072106	(21266239)	+	(GT)n	Simple_repeat	1	23	(0)	1505021
37	0.0	0.0	0.0	chr16	69072123	69072154	(21266191)	+	(GT)n	Simple_repeat	1	32	(0)	1505021
238	14.2	0.6	5.9	chr16	70644696	70645219	(19693126)	+	GA-rich	Low_complexity	1	527	(0)	1508444
37	0.0	0.0	0.0	chr16	72002615	72002646	(18335699)	+	(GT)n	Simple_repeat	1	32	(0)	1510815
20	6.5	0.0	2.9	chr16	73096162	73096195	(17242150)	+	(CTGC)n	Simple_repeat	1	34	(0)	1512405
216	36.4	6.0	0.9	chr16	75461674	75461784	(14876561)	+	L2c	LINE/L2	3270	3386	(1)	1516844
197	35.6	6.5	0.0	chr16	77764624	77764724	(12573621)	+	MIRc	SINE/MIR	9	116	(152)	1520434
46	0.0	0.0	0.0	chr16	77764738	77764776	(12573569)	+	(GT)n	Simple_repeat	1	39	(0)	1520435
317	24.8	4.9	5.7	chr16	77896394	77896517	(12441828)	+	MIRb	SINE/MIR	128	250	(18)	1520692
193	31.9	6.5	4.0	chr16	78294554	78294628	(12043717)	+	L2b	LINE/L2	3199	3275	(100)	1521467
30	23.9	1.1	3.2	chr16	78294713	78294804	(12043541)	+	GA-rich	Low_complexity	1	93	(0)	1521468
29	22.8	1.4	0.0	chr16	78294831	78294903	(12043442)	+	(TGAA)n	Simple_repeat	1	74	(0)	1521469
109	27.8	1.2	3.9	chr16	80171158	80171559	(10166786)	+	(CACCAT)n	Simple_repeat	1	391	(0)	1524841
348	36.5	0.0	0.0	chr16	84800333	84800469	(5537876)	C	MIR	SINE/MIR	(31)	231	95	1533590
120	26.6	2.1	1.2	chr16	85156858	85157340	(5181005)	+	(ATCC)n	Simple_repeat	1	487	(0)	1534296
50	33.5	1.8	1.3	chr16	85245870	85246089	(5092256)	+	(TG)n	Simple_repeat	1	224	(0)	1534483
230	21.9	2.4	1.2	chr16	85400250	85400915	(4937430)	+	(TG)n	Simple_repeat	1	674	(0)	1534780
180	27.3	3.3	2.0	chr16	85522671	85523335	(4815010)	+	(GT)n	Simple_repeat	1	687	(0)	1535003
264	11.0	7.2	1.5	chr16	85572020	85572574	(4765771)	+	(AC)n	Simple_repeat	1	595	(0)	1535081
354	30.7	4.8	7.3	chr16	86224405	86224641	(4113704)	+	MIRb	SINE/MIR	17	262	(6)	1536280
132	26.9	2.2	1.2	chr16	86224645	86225061	(4113284)	+	(TGTTGG)n	Simple_repeat	1	426	(0)	1536281
257	23.7	0.3	0.2	chr16	86393781	86394346	(3943999)	+	(TCATCA)n	Simple_repeat	1	568	(0)	1536570
78	22.0	2.9	1.4	chr16	86502009	86502214	(3836131)	+	(TG)n	Simple_repeat	1	212	(0)	1536773
219	24.6	1.6	2.7	chr16	86801994	86802077	(3536268)	+	MIRb	SINE/MIR	178	261	(1)	1537265
153	22.4	1.1	1.4	chr16	86802078	86802436	(3535909)	+	(GAT)n	Simple_repeat	1	363	(0)	1537267
303	21.3	2.9	0.3	chr16	86951044	86951740	(3386605)	+	(ATCACC)n	Simple_repeat	1	717	(0)	1537529
600	27.0	9.7	3.0	chr16	88289493	88289694	(2048651)	C	MIR	SINE/MIR	(15)	247	31	1539777
3367	9.1	11.9	1.3	chr17	5809318	5809849	(77447592)	+	LTR4	LTR/ERV1	1	596	(0)	1555850
403	22.1	0.7	16.6	chr17	6162713	6162875	(77094566)	+	HAL1b	LINE/L1	2247	2383	(38)	1556510
371	28.2	9.6	5.0	chr17	6163132	6163389	(77094052)	+	MamRep1527	LTR	296	566	(403)	1556511
748	14.4	2.8	0.6	chr17	6560503	6561870	(76695571)	+	(CTCCTC)n	Simple_repeat	1	1398	(0)	1557326
697	26.4	3.0	0.8	chr17	7174610	7176778	(76080663)	+	(CA)n	Simple_repeat	1	2233	(0)	1558389
1286	16.9	4.9	2.2	chr17	10612801	10613078	(72644363)	C	L1MB7	LINE/L1	(11)	6173	5888	1564965
366	29.9	5.8	8.7	chr17	10613079	10613146	(72644295)	C	Tigger15a	DNA/TcMar-Tigger	(154)	561	491	1564964
2031	16.7	0.0	1.3	chr17	12685014	12685313	(70572128)	+	AluSz	SINE/Alu	1	296	(16)	1568489
2365	10.0	0.7	0.7	chr17	12685323	12685621	(70571820)	+	AluSz	SINE/Alu	1	299	(13)	1568490
183	7.9	3.7	4.4	chr17	12688427	12688776	(70568665)	+	(TTCC)n	Simple_repeat	1	363	(0)	1568493
290	35.5	6.6	1.2	chr17	13888034	13888278	(69369163)	C	LTR88b	LTR/Gypsy?	(435)	402	144	1570527
238	19.4	5.6	5.6	chr17	13888300	13888370	(69369071)	C	LTR88b	LTR/Gypsy?	(783)	79	9	1570527
658	27.3	8.2	6.7	chr17	14541347	14541719	(68715722)	C	LTR78	LTR/ERV1	(7)	1297	919	1571627
126	15.8	2.1	4.0	chr17	14541951	14542240	(68715201)	+	(TTCCC)n	Simple_repeat	1	296	(0)	1571628
14	11.7	0.0	3.3	chr17	18625940	18625969	(64631472)	+	(AAAAC)n	Simple_repeat	1	30	(0)	1578849
959	22.5	7.4	7.4	chr17	18625974	18626299	(64631142)	+	L1MD	LINE/L1	4120	4445	(1701)	1578850
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
49	0.0	0.0	0.0	chr17	29744861	29744902	(53512539)	+	(GT)n	Simple_repeat	1	42	(0)	1591253
340	29.9	1.7	2.1	chr17	34624495	34624662	(48632779)	C	L2b	LINE/L2	(232)	3155	2987	1600765
476	31.5	15.9	7.4	chr17	35851271	35851698	(47405743)	C	L2	LINE/L2	(2087)	1332	817	1602922
106	1.8	3.5	0.0	chr17	40140318	40140430	(43117011)	+	(AC)n	Simple_repeat	1	117	(0)	1611417
385	35.5	12.5	5.3	chr17	40486381	40486963	(42770478)	+	L2b	LINE/L2	2741	3372	(3)	1612149
551	15.5	4.8	2.0	chr17	41632551	41633816	(41623625)	+	(GT)n	Simple_repeat	1	1327	(0)	1613928
156	23.5	2.0	2.4	chr17	41651910	41652352	(41605089)	+	(AC)n	Simple_repeat	1	452	(0)	1613961
183	28.8	0.2	0.8	chr17	44982254	44982763	(38274678)	+	(TGG)n	Simple_repeat	1	511	(0)	1621106
503	28.4	13.4	4.7	chr17	45440337	45440547	(37816894)	+	MIRb	SINE/MIR	22	253	(15)	1622044
962	22.7	4.7	0.0	chr17	45440581	45440783	(37816658)	C	MIR	SINE/MIR	(36)	226	14	1622045
190	27.2	0.9	16.8	chr17	46742718	46742854	(36514587)	C	L2c	LINE/L2	(35)	3352	3238	1624647
2042	14.9	0.0	1.6	chr17	48085784	48086098	(35171343)	+	AluSx	SINE/Alu	1	310	(2)	1627251
799	11.2	0.0	0.0	chr17	48088678	48088784	(35168657)	C	U6	snRNA	(0)	107	1	1627259
229	17.9	9.7	1.8	chr17	48088820	48088876	(35168565)	C	L1MC	LINE/L1	(2036)	5846	5785	1627260
431	14.1	2.3	0.0	chr17	48088915	48088999	(35168442)	+	Alu	SINE/Alu	221	307	(4)	1627261
2263	9.8	0.0	0.7	chr17	48820909	48821203	(34436238)	+	AluSx1	SINE/Alu	2	294	(18)	1628559
1905	15.6	0.7	0.0	chr17	48821210	48821497	(34435944)	+	AluJb	SINE/Alu	5	294	(18)	1628560
176	24.6	1.2	0.0	chr17	56770392	56770813	(26486628)	+	(ATCC)n	Simple_repeat	1	427	(0)	1641939
7048	22.2	5.6	7.5	chr17	58260113	58262377	(24995064)	C	L1MA1	LINE/L1	(1731)	4806	1804	1644731
115	17.3	0.5	0.0	chr17	60155496	60155703	(23101738)	+	(CA)n	Simple_repeat	1	209	(0)	1648686
1662	13.3	9.6	3.9	chr17	62470549	62470833	(20786608)	C	AluJr4	SINE/Alu	(9)	303	1	1653055
181	31.1	5.1	2.6	chr17	62470836	62470911	(20786530)	+	L2c	LINE/L2	3279	3356	(31)	1653056
12	11.6	6.9	0.0	chr17	62470916	62470944	(20786497)	+	G-rich	Low_complexity	1	31	(0)	1653057
668	25.6	11.9	0.5	chr17	62471001	62471215	(20786226)	C	MIRb	SINE/MIR	(22)	240	1	1653058
265	27.1	10.1	8.9	chr17	73474271	73474416	(9783025)	C	MIRb	SINE/MIR	(75)	193	46	1672393
58	30.2	1.8	9.6	chr17	74514143	74514815	(8742626)	+	(TGACAGG)n	Simple_repeat	1	685	(0)	1674300
445	23.7	8.2	2.4	chr17	77420877	77421033	(5836408)	C	MIR	SINE/MIR	(71)	197	23	1680021
14	16.2	0.0	0.0	chr17	77485551	77485578	(5771863)	+	(ATA)n	Simple_repeat	1	28	(0)	1680116
360	28.8	0.9	0.8	chr17	77509083	77510098	(5747343)	+	(ATC)n	Simple_repeat	1	1025	(0)	1680149
59	0.0	0.0	0.0	chr17	78718219	78718268	(4539173)	+	(AC)n	Simple_repeat	1	50	(0)	1682320
268	18.5	6.7	2.0	chr17	80511054	80511848	(2745593)	+	(CA)n	Simple_repeat	1	848	(0)	1685123
14	6.8	9.7	0.0	chr18	48902043	48902073	(31471212)	+	(GCAG)n	Simple_repeat	1	34	(0)	1752634
2339	9.5	0.0	0.0	chr18	48983558	48983852	(31389433)	C	AluSc5	SINE/Alu	(14)	295	1	1752784
229	24.8	1.8	17.4	chr18	48983853	48983915	(31389370)	C	MER5A	DNA/hAT-Charlie	(118)	71	18	1752783
212	18.8	0.0	5.9	chr18	48984034	48984084	(31389201)	+	L2b	LINE/L2	3328	3375	(0)	1752785
2873	9.7	1.4	3.9	chr18	50963364	50963803	(29409482)	C	LTR3A	LTR/ERVK	(55)	429	1	1756106
74	38.8	1.1	2.8	chr19	14595567	14596030	(44021586)	+	(TGA)n	Simple_repeat	1	469	(0)	1829894
136	33.0	2.5	1.5	chr19	15035755	15036278	(43581338)	+	GA-rich	Low_complexity	1	537	(0)	1830921
1062	27.1	5.2	2.2	chr19	28341649	28342003	(30275613)	C	MLT1I	LTR/ERVL-MaLR	(6)	405	40	1848611
62	0.0	0.0	0.0	chr19	28406119	28406171	(30211445)	+	(AC)n	Simple_repeat	1	53	(0)	1848719
70	12.8	1.4	3.5	chr19	28465788	28465926	(30151690)	+	GA-rich	Low_complexity	1	141	(0)	1848808
1224	22.9	1.6	2.8	chr19	28465929	28466255	(30151361)	+	L1MA9	LINE/L1	5953	6275	(37)	1848807
259	30.6	4.8	3.0	chr19	28490705	28490805	(30126811)	C	L2a	LINE/L2	(58)	3368	3266	1848858
46	10.2	0.0	0.0	chr19	28584448	28584538	(30033078)	+	(AC)n	Simple_repeat	1	91	(0)	1849011
241	26.9	1.8	0.6	chr19	28846142	28846814	(29770802)	+	(TG)n	Simple_repeat	1	685	(0)	1849313
657	17.8	3.7	0.1	chr19	29015377	29016739	(29600877)	+	(CT)n	Simple_repeat	1	1414	(0)	1849615
1732	16.3	2.9	0.0	chr19	29439515	29439845	(29177771)	+	LTR38B	LTR/ERV1	11	351	(259)	1850244
7350	14.4	10.3	3.9	chr19	29439846	29441309	(29176307)	+	LTR12C	LTR/ERV1	3	1570	(9)	1850245
896	20.2	3.9	5.4	chr19	29511689	29514831	(29102785)	+	GA-rich	Low_complexity	1	3266	(0)	1850347
300	34.0	2.1	0.6	chr19	29541464	29542614	(29075002)	+	(GATG)n	Simple_repeat	1	1175	(0)	1850387
367	38.2	9.6	2.0	chr19	29671994	29672182	(28945434)	C	L2a	LINE/L2	(18)	3408	3199	1850612
638	23.6	5.4	0.0	chr19	29749381	29749537	(28868079)	+	X9_LINE	LINE/L1	22	187	(749)	1850754
85	9.9	3.3	5.3	chr19	29749608	29749790	(28867826)	+	(CTTT)n	Simple_repeat	1	189	(0)	1850755
458	25.4	0.6	0.5	chr19	30067848	30068841	(28548775)	+	(CATC)n	Simple_repeat	1	994	(0)	1851349
56	7.4	0.0	0.0	chr19	30068842	30068914	(28548702)	+	(TCCA)n	Simple_repeat	1	73	(0)	1851350
2524	8.1	0.0	0.0	chr19	30084800	30085106	(28532510)	C	AluSq	SINE/Alu	(6)	307	1	1851366
282	33.2	0.2	0.7	chr19	30170954	30171708	(28445908)	+	(GTGT)n	Simple_repeat	3	756	(0)	1851506
325	20.1	0.9	0.3	chr19	30337888	30338541	(28279075)	+	(TGA)n	Simple_repeat	1	660	(0)	1851721
637	29.7	9.4	0.9	chr19	30338548	30338761	(28278855)	+	MIR	SINE/MIR	5	238	(24)	1851722
35	7.8	1.9	0.0	chr19	30426961	30427014	(28190602)	+	(ATCC)n	Simple_repeat	1	55	(0)	1851841
320	24.6	3.2	12.9	chr19	30427074	30427213	(28190403)	+	MIR3	SINE/MIR	71	196	(12)	1851842
54	12.6	1.0	2.0	chr19	30550547	30550645	(28066971)	+	GA-rich	Low_complexity	1	100	(0)	1852025
152	18.0	2.4	3.4	chr19	30699951	30700319	(27917297)	+	(TTTC)n	Simple_repeat	1	378	(0)	1852196
26	23.7	1.4	0.0	chr19	30700283	30700348	(27917268)	+	(TCCC)n	Simple_repeat	1	67	(0)	1852197
35	6.1	1.9	1.8	chr19	30700349	30700402	(27917214)	+	(TCCT)n	Simple_repeat	1	55	(0)	1852198
234	15.1	0.0	0.0	chr19	30701186	30701575	(27916041)	+	(CACACA)n	Simple_repeat	1	390	(0)	1852200
265	28.9	4.9	3.7	chr19	30785081	30785242	(27832374)	+	L2a	LINE/L2	1617	1780	(1639)	1852311
108	43.9	1.5	2.9	chr19	30815826	30816635	(27800981)	+	(TCTT)n	Simple_repeat	1	822	(0)	1852343
59	20.2	5.1	5.3	chr19	30919785	30919998	(27697618)	+	GA-rich	Low_complexity	1	213	(0)	1852452
143	27.1	5.8	3.4	chr19	31014364	31015072	(27602544)	+	GA-rich	Low_complexity	1	725	(0)	1852603
65	31.8	2.0	2.3	chr19	31073533	31073884	(27543732)	+	(CTCC)n	Simple_repeat	1	350	(0)	1852696
254	32.1	0.5	0.8	chr19	31094949	31095778	(27521838)	+	(CA)n	Simple_repeat	1	834	(0)	1852725
1553	27.5	5.8	1.1	chr19	31179067	31179544	(27438072)	C	LTR33	LTR/ERVL	(7)	508	7	1852863
113	30.0	0.0	0.3	chr19	31179560	31179865	(27437751)	+	(TGG)n	Simple_repeat	1	306	(0)	1852864
2206	12.6	8.1	0.6	chr19	31203859	31204210	(27413406)	C	THE1D	LTR/ERVL-MaLR	(0)	381	1	1852890
128	19.6	3.7	2.8	chr19	31204211	31204443	(27413173)	+	(CTTC)n	Simple_repeat	2	236	(0)	1852891
57	9.9	1.8	1.8	chr19	31292722	31292833	(27324783)	+	(CCAT)n	Simple_repeat	1	114	(0)	1853010
900	28.6	9.5	1.6	chr19	31372710	31373078	(27244538)	+	MLT1J2	LTR/ERVL-MaLR	48	448	(0)	1853120
608	29.0	14.5	4.6	chr19	31455125	31456363	(27161253)	+	L1MEd	LINE/L1	2443	3825	(2321)	1853243
534	21.6	17.7	2.9	chr19	31637335	31637544	(26980072)	C	Tigger13a	DNA/TcMar-Tigger	(510)	261	14	1853531
456	26.0	3.0	12.3	chr19	31637591	31637658	(26979958)	+	MIRb	SINE/MIR	51	112	(156)	1853534
1713	14.9	2.1	4.4	chr19	31637659	31637953	(26979663)	+	AluJr	SINE/Alu	1	288	(24)	1853535
142	21.4	4.5	1.8	chr19	31733010	31733432	(26884184)	+	(TCTCTG)n	Simple_repeat	1	442	(0)	1853672
635	28.7	1.7	5.6	chr19	31894952	31895202	(26722414)	+	MIRb	SINE/MIR	28	268	(0)	1853907
246	13.8	1.1	2.4	chr19	32058047	32058502	(26559114)	+	(CTTC)n	Simple_repeat	1	461	(0)	1854130
1330	16.0	6.6	2.2	chr19	32188725	32188955	(26428661)	+	AluJr	SINE/Alu	22	263	(49)	1854369
19	31.9	4.3	2.1	chr19	32188982	32189074	(26428542)	+	GA-rich	Low_complexity	1	97	(0)	1854370
78	2.7	3.1	4.6	chr19	32189045	32189171	(26428445)	+	(AAGG)n	Simple_repeat	1	131	(0)	1854371
272	24.5	12.0	4.1	chr19	32189410	32189554	(26428062)	C	L1ME4a	LINE/L1	(3)	6121	5964	1854372
120	27.0	4.0	3.0	chr19	32223030	32223508	(26394108)	+	GA-rich	Low_complexity	1	498	(0)	1854428
659	21.3	10.3	2.9	chr19	32532240	32532481	(26085135)	+	LTR37B	LTR/ERV1	207	468	(0)	1854957
110	22.9	1.2	0.0	chr19	32532574	32532831	(26084785)	+	(TCTCTC)n	Simple_repeat	1	261	(0)	1854958
416	28.3	6.8	4.2	chr19	33127547	33127693	(25489923)	C	L1ME3G	LINE/L1	(63)	861	705	1856233
2060	12.5	1.0	3.0	chr19	33127712	33128015	(25489601)	C	AluSx1	SINE/Alu	(14)	298	1	1856235
42	41.5	1.3	1.9	chr19	33203040	33203346	(25414270)	+	(GT)n	Simple_repeat	1	311	(0)	1856410
573	17.1	4.2	0.7	chr19	33249725	33250982	(25366634)	+	(AC)n	Simple_repeat	1	1311	(0)	1856479
35	8.8	0.0	0.0	chr19	33274201	33274248	(25343368)	+	(TG)n	Simple_repeat	1	48	(0)	1856521
49	37.9	0.0	0.9	chr19	33274297	33274517	(25343099)	+	(GT)n	Simple_repeat	1	221	(0)	1856522
50	18.8	1.6	3.2	chr19	33307517	33307638	(25309978)	+	(TTTC)n	Simple_repeat	1	124	(0)	1856561
2161	15.4	0.0	0.0	chr19	33307640	33307950	(25309666)	C	AluSx	SINE/Alu	(1)	311	1	1856562
1539	14.5	0.0	12.3	chr19	33340778	33341094	(25276522)	+	AluJr	SINE/Alu	1	278	(34)	1856636
73	16.7	2.4	2.9	chr19	33341099	33341266	(25276350)	+	GA-rich	Low_complexity	1	172	(0)	1856637
5215	20.4	3.5	5.0	chr19	33355359	33356342	(25261274)	C	L1M4b	LINE/L1	(4437)	2430	1454	1856658
64	25.8	3.4	3.3	chr19	33436072	33436307	(25181309)	+	GA-rich	Low_complexity	1	244	(0)	1856767
224	21.8	7.7	2.0	chr19	33458003	33458881	(25158735)	+	(GT)n	Simple_repeat	1	929	(0)	1856794
462	19.2	3.9	4.4	chr19	33505649	33507069	(25110547)	+	(AC)n	Simple_repeat	1	1477	(0)	1856851
1837	13.9	0.7	2.7	chr19	33633395	33633695	(24983921)	C	AluJo	SINE/Alu	(15)	297	3	1857081
1588	23.6	5.9	4.5	chr19	33633696	33633763	(24983853)	C	L1ME3A	LINE/L1	(514)	5659	5590	1857077
1771	14.4	2.0	1.7	chr19	33633764	33633774	(24983842)	C	AluJb	SINE/Alu	(18)	294	285	1857082
47	0.0	0.0	0.0	chr19	33633775	33633814	(24983802)	+	(GT)n	Simple_repeat	1	40	(0)	1857083
1771	14.4	2.0	1.7	chr19	33633815	33633966	(24983650)	C	AluJb	SINE/Alu	(28)	284	136	1857082
166	29.8	2.8	2.5	chr19	33775614	33776445	(24841171)	+	(GT)n	Simple_repeat	1	834	(0)	1857290
34	19.1	3.9	6.0	chr19	33788799	33788926	(24828690)	+	GA-rich	Low_complexity	1	133	(0)	1857318
476	23.9	19.8	0.8	chr19	33789015	33789280	(24828336)	+	L1ME3Cz	LINE/L1	623	951	(46)	1857319
21	27.1	8.3	1.9	chr19	34599704	34599848	(24017768)	+	(CTCTTC)n	Simple_repeat	1	157	(0)	1858893
302	34.6	4.2	1.4	chr19	34599853	34599990	(24017626)	C	L1ME3B	LINE/L1	(2)	6240	6099	1858894
654	11.9	8.5	0.0	chr19	34600039	34600156	(24017460)	C	L1PA6	LINE/L1	(4)	6150	6022	1858895
503	23.9	0.9	2.6	chr19	34690558	34690673	(23926943)	C	L1M1	LINE/L1	(7442)	123	10	1859004
2731	24.5	7.9	1.7	chr19	34690700	34691633	(23925983)	C	L1MEc	LINE/L1	(5372)	1028	32	1859005
1625	16.9	2.3	0.4	chr19	35070312	35070571	(23547045)	C	AluJb	SINE/Alu	(10)	302	38	1859647
1152	26.3	10.4	2.5	chr19	35070572	35070900	(23546716)	C	MLT1G	LTR/ERVL-MaLR	(202)	389	4	1859646
54	26.7	4.4	3.8	chr19	35075259	35075509	(23542107)	+	GA-rich	Low_complexity	1	262	(0)	1859659
234	33.3	0.9	0.1	chr19	35105327	35106078	(23511538)	+	(CAC)n	Simple_repeat	1	759	(0)	1859733
2102	14.1	0.3	0.7	chr19	35216039	35216344	(23401272)	+	AluSz	SINE/Alu	2	306	(6)	1859960
1621	21.8	9.6	2.1	chr19	35216422	35216891	(23400725)	+	MLT1H	LTR/ERVL-MaLR	1	484	(5)	1859961
341	9.1	0.0	1.2	chr19	35392774	35392828	(23224788)	C	MLT2C2	LTR/ERVL	(1)	559	506	1860309
262	24.5	0.2	0.0	chr19	35392830	35393428	(23224188)	+	(TG)n	Simple_repeat	1	600	(0)	1860310
243	23.7	9.5	3.8	chr19	35820006	35820057	(22797559)	+	L2	LINE/L2	2339	2396	(1023)	1861233
62	0.0	0.0	0.0	chr19	35820058	35820110	(22797506)	+	(AC)n	Simple_repeat	1	53	(0)	1861234
243	23.7	9.5	3.8	chr19	35820111	35820136	(22797480)	+	L2	LINE/L2	2397	2422	(997)	1861233
368	26.9	4.4	0.0	chr19	35820143	35820272	(22797344)	+	MER20B	DNA/hAT-Charlie	7	142	(641)	1861235
800	9.7	0.0	23.7	chr19	35947304	35947510	(22670106)	+	AluJr	SINE/Alu	140	297	(15)	1861521
49	0.0	0.0	0.0	chr19	35947598	35947639	(22669977)	+	(GT)n	Simple_repeat	1	42	(0)	1861522
1868	8.6	7.9	0.0	chr19	35947640	35947894	(22669722)	C	AluSc8	SINE/Alu	(34)	277	1	1861523
12	25.2	3.3	7.4	chr19	35978022	35978113	(22639503)	+	(TTCCCT)n	Simple_repeat	1	95	(0)	1861599
1847	15.2	6.8	0.0	chr19	35978114	35978403	(22639213)	C	AluSx	SINE/Alu	(1)	311	1	1861600
19	21.8	0.0	2.2	chr19	36916623	36916667	(21700949)	+	(TG)n	Simple_repeat	1	45	(0)	1863509
209	27.8	19.4	2.2	chr19	36916809	36916944	(21700672)	+	L2	LINE/L2	2042	2206	(1213)	1863510
24	16.2	2.0	2.0	chr19	37135637	37135686	(21481930)	+	(AC)n	Simple_repeat	1	51	(0)	1863875
32	25.9	4.5	3.7	chr19	37293674	37293684	(21323932)	+	(ACAG)n	Simple_repeat	1	25	(139)	1864182
49	16.0	1.1	1.1	chr19	37293685	37293776	(21323840)	+	GA-rich	Low_complexity	1	93	(0)	1864183
32	25.9	4.5	3.7	chr19	37293777	37293830	(21323786)	+	(ACAG)n	Simple_repeat	26	164	(0)	1864182
37	21.9	2.2	1.1	chr19	37293783	37293874	(21323742)	+	(CA)n	Simple_repeat	1	94	(0)	1864184
11534	1.7	0.0	2.1	chr19	37293875	37295470	(21322146)	C	SST1	Satellite/centr	(0)	1563	1	1864185
2529	6.7	0.0	0.0	chr19	37364829	37365128	(21252488)	C	AluYf1	SINE/Alu	(11)	300	1	1864312
3707	12.0	1.3	11.7	chr19	37365129	37365830	(21251786)	C	LTR76	LTR/ERV1	(46)	629	1	1864311
584	25.2	20.8	5.6	chr19	37377035	37377479	(21240137)	C	L2a	LINE/L2	(1516)	1903	1374	1864331
398	27.6	4.5	0.0	chr19	37524994	37525120	(21092496)	C	Charlie4a	DNA/hAT-Charlie	(304)	204	72	1864607
2503	7.7	0.0	0.6	chr19	37525126	37525437	(21092179)	C	AluY	SINE/Alu	(1)	310	1	1864608
2404	9.2	0.0	0.7	chr19	37743045	37743349	(20874267)	+	AluSx3	SINE/Alu	9	311	(0)	1865013
11151	5.2	0.5	2.1	chr19	37743350	37744096	(20873520)	+	L1PA8A	LINE/L1	5366	6102	(29)	1865012
2087	8.9	3.2	0.0	chr19	37798749	37799017	(20818599)	+	AluSg4	SINE/Alu	1	278	(32)	1865130
36	13.6	2.5	3.6	chr19	37799018	37799098	(20818518)	+	A-rich	Low_complexity	1	83	(0)	1865131
75	30.1	0.8	2.0	chr19	37886567	37886818	(20730798)	+	(CTC)n	Simple_repeat	1	254	(0)	1865304
1053	29.9	6.4	3.8	chr19	38431342	38431828	(20185788)	+	L1ME5	LINE/L1	5442	5950	(244)	1866640
486	17.6	0.0	0.0	chr19	38468133	38468206	(20149410)	+	AluJo	SINE/Alu	95	168	(144)	1866727
28	37.0	2.3	2.2	chr19	38478029	38478205	(20139411)	+	(CCT)n	Simple_repeat	1	181	(0)	1866754
3082	15.2	1.7	1.7	chr19	38758135	38758446	(19859170)	+	Tigger3c	DNA/TcMar-Tigger	1	317	(285)	1867366
2187	12.3	0.0	2.6	chr19	38758447	38758614	(19859002)	C	AluSz	SINE/Alu	(12)	300	134	1867367
2274	10.9	0.3	0.0	chr19	38758615	38758916	(19858700)	C	AluSg	SINE/Alu	(7)	303	1	1867368
230	23.2	3.5	0.0	chr19	38774258	38774313	(19843303)	C	MIR3	SINE/MIR	(61)	147	90	1867406
978	26.5	5.5	20.4	chr19	39221169	39221584	(19396032)	C	L2	LINE/L2	(1192)	2227	1815	1868573
42	0.0	0.0	5.8	chr19	39221585	39221636	(19395980)	+	(TTTC)n	Simple_repeat	1	52	(0)	1868577
978	26.5	5.5	20.4	chr19	39221637	39221776	(19395840)	C	L2	LINE/L2	(1605)	1814	1783	1868573
80	5.3	3.2	2.3	chr19	39221777	39221901	(19395715)	+	(TCCT)n	Simple_repeat	1	129	(0)	1868578
1827	15.2	0.7	0.3	chr19	39276805	39277087	(19340529)	+	AluJb	SINE/Alu	21	304	(8)	1868731
1645	16.8	15.1	5.9	chr19	39277088	39277133	(19340483)	C	LTR47A	LTR/ERVL	(413)	39	4	1868729
2004	12.8	0.4	0.0	chr19	39277151	39277424	(19340192)	C	AluSz	SINE/Alu	(15)	297	23	1868732
57	24.5	4.6	1.0	chr19	39878439	39878633	(18738983)	+	(TCTC)n	Simple_repeat	1	204	(0)	1869809
15	14.4	0.0	0.0	chr19	39891090	39891113	(18726503)	+	(T)n	Simple_repeat	1	24	(0)	1869840
2334	8.9	1.3	0.0	chr19	39891117	39891420	(18726196)	C	AluSx1	SINE/Alu	(0)	312	5	1869841
6310	22.6	12.8	5.4	chr19	40025616	40026792	(18590824)	C	L1M4b	LINE/L1	(4223)	2644	1434	1870127
5865	17.8	1.0	2.1	chr19	40130722	40131880	(18485736)	+	L1M4	LINE/L1	3962	5109	(2128)	1870268
2016	9.6	7.6	0.3	chr19	40505411	40505692	(18111924)	+	AluSx	SINE/Alu	2	305	(7)	1871259
61	1.7	0.0	0.0	chr19	40505696	40505754	(18111862)	+	(AAGG)n	Simple_repeat	1	59	(0)	1871260
1290	22.9	17.1	1.5	chr19	40527319	40527776	(18089840)	C	L2a	LINE/L2	(0)	3426	2877	1871325
12	20.8	0.0	2.9	chr19	40533661	40533695	(18083921)	+	(TCTA)n	Simple_repeat	1	35	(0)	1871333
16	36.3	0.0	3.2	chr19	40533810	40533903	(18083713)	+	(TCTT)n	Simple_repeat	1	94	(0)	1871334
88	6.9	0.0	0.0	chr19	40569937	40570042	(18047574)	+	(CA)n	Simple_repeat	1	106	(0)	1871442
176	9.5	1.1	0.0	chr19	40825492	40825757	(17791859)	+	(TATG)n	Simple_repeat	1	269	(0)	1872030
871	11.1	0.0	0.0	chr19	40825759	40825875	(17791741)	C	AluJo	SINE/Alu	(191)	121	5	1872031
3437	10.8	1.8	4.1	chr19	40919245	40920296	(17697320)	+	MER11A	LTR/ERVK	133	1266	(0)	1872233
27	28.9	6.0	1.3	chr19	40936611	40936760	(17680856)	+	(AGACAG)n	Simple_repeat	1	159	(0)	1872267
19	26.5	4.7	2.2	chr19	40941493	40941578	(17676038)	+	G-rich	Low_complexity	1	90	(0)	1872280
331	27.6	2.1	2.3	chr19	40959295	40960432	(17657184)	+	(TC)n	Simple_repeat	1	1162	(0)	1872320
47	0.0	0.0	0.0	chr19	40961242	40961284	(17656332)	+	(ATCT)n	Simple_repeat	1	43	(0)	1872321
32	39.9	1.4	0.9	chr19	40961400	40961612	(17656004)	+	(TCCA)n	Simple_repeat	1	216	(0)	1872322
20	29.2	1.6	0.0	chr19	40963687	40963748	(17653868)	+	(AC)n	Simple_repeat	1	63	(0)	1872325
12	3.6	10.0	3.0	chr19	40963870	40963899	(17653717)	+	GA-rich	Low_complexity	1	33	(0)	1872326
813	12.0	0.0	0.0	chr19	41122354	41122470	(17495146)	+	AluJo	SINE/Alu	5	121	(191)	1872636
86	8.1	0.8	0.0	chr19	41122472	41122591	(17495025)	+	(ACAT)n	Simple_repeat	1	121	(0)	1872637
736	0.0	0.0	0.0	chr19	41501338	41501438	(17116178)	C	AluYa8	SINE/Alu	(0)	310	205	1873534
1626	23.0	6.7	2.0	chr19	41501466	41501864	(17115752)	+	L1PA12	LINE/L1	88	506	(6475)	1873535
375	19.9	6.1	2.7	chr19	41918206	41919154	(16698462)	+	(AC)n	Simple_repeat	1	984	(0)	1874171
67	26.0	5.0	3.7	chr19	42154216	42154552	(16463064)	+	(AGAGAC)n	Simple_repeat	1	354	(0)	1874692
2490	8.3	0.0	0.0	chr19	42531774	42532074	(16085542)	+	AluSq2	SINE/Alu	1	301	(12)	1875471
18	10.1	2.0	7.8	chr19	43145388	43145437	(15472179)	+	(CTTCCCT)n	Simple_repeat	1	51	(0)	1876290
19603	10.2	6.5	5.6	chr19	43325694	43328950	(15288666)	C	HERVH-int	LTR/ERV1	(4423)	3290	1	1876513
78	30.8	0.0	0.4	chr19	43331707	43331939	(15285677)	+	(CA)n	Simple_repeat	1	233	(0)	1876518
929	25.7	13.7	2.6	chr19	43331944	43332395	(15285221)	C	LTR54	LTR/ERV1	(0)	510	1	1876519
47	4.2	0.0	0.0	chr19	43333018	43333066	(15284550)	+	(TG)n	Simple_repeat	1	49	(0)	1876520
2239	12.2	1.3	0.3	chr19	43340329	43340347	(15277269)	C	AluSz	SINE/Alu	(0)	312	294	1876537
46	5.5	0.0	1.7	chr19	43340348	43340407	(15277209)	+	(CTTC)n	Simple_repeat	1	60	(0)	1876538
44	34.8	1.5	1.0	chr19	43341226	43341423	(15276193)	+	(TC)n	Simple_repeat	1	201	(0)	1876541
29	38.0	1.8	2.6	chr19	43368181	43368404	(15249212)	+	(TCTCCC)n	Simple_repeat	1	228	(0)	1876591
1784	17.6	1.6	2.2	chr19	43421857	43422169	(15195447)	+	AluJb	SINE/Alu	1	311	(1)	1876702
50	8.3	4.0	3.9	chr19	43422177	43422275	(15195341)	+	A-rich	Low_complexity	1	103	(0)	1876703
1387	21.0	2.3	2.3	chr19	43422283	43422728	(15194888)	+	L1MD2	LINE/L1	5482	5961	(213)	1876704
1844	19.6	0.6	0.3	chr19	43498056	43498366	(15119250)	+	AluJb	SINE/Alu	1	312	(0)	1876939
60	22.6	2.3	2.8	chr19	43498367	43498527	(15119089)	+	A-rich	Low_complexity	14	174	(0)	1876940
950	30.0	6.7	0.8	chr19	43691838	43692190	(14925426)	+	L1MEd	LINE/L1	561	935	(6151)	1877446
2231	11.1	0.3	0.7	chr19	43702759	43703065	(14914551)	C	AluSz	SINE/Alu	(6)	306	1	1877476
263	23.1	3.6	8.5	chr19	43703178	43703295	(14914321)	C	L1MC5a	LINE/L1	(108)	2669	2558	1877477
12355	13.9	4.0	1.7	chr19	43859377	43862588	(14755028)	+	L1MA5A	LINE/L1	4431	7706	(10)	1877832
2051	14.3	0.3	0.0	chr19	45801479	45801772	(12815844)	+	AluSz	SINE/Alu	1	295	(17)	1882283
34	7.5	0.0	0.0	chr19	45801794	45801836	(12815780)	+	(CA)n	Simple_repeat	1	43	(0)	1882284
1939	24.9	11.6	9.5	chr19	46132077	46133206	(12484410)	C	HERV35I-int	LTR/ERV1	(5736)	1182	26	1882995
3269	8.9	1.3	3.0	chr19	46210397	46210857	(12406759)	C	MLT2A2	LTR/ERVL	(0)	453	1	1883129
321	22.4	6.5	0.0	chr19	46210870	46210985	(12406631)	+	LTR67B	LTR/ERVL	8	131	(489)	1883130
355	18.3	3.2	0.5	chr19	46330269	46331038	(12286578)	+	(ATGG)n	Simple_repeat	1	795	(0)	1883403
1545	23.6	7.5	4.6	chr19	46770761	46771218	(11846398)	C	MERX	DNA/TcMar-Tigger	(82)	674	198	1884497
1717	15.0	1.7	7.2	chr19	46771219	46771351	(11846265)	+	AluJb	SINE/Alu	1	126	(186)	1884500
1760	16.7	3.6	1.4	chr19	46783512	46783805	(11833811)	+	AluJb	SINE/Alu	1	301	(11)	1884534
110	22.8	1.9	1.1	chr19	48025514	48025784	(10591832)	+	(TCCTCC)n	Simple_repeat	1	276	(0)	1887735
1435	24.9	4.9	1.8	chr19	48025870	48026306	(10591310)	+	LTR16A	LTR/ERVL	1	451	(0)	1887736
504	29.0	8.9	1.0	chr19	48539660	48539853	(10077763)	+	MIR	SINE/MIR	51	252	(10)	1889000
2102	11.3	0.0	0.0	chr19	48539883	48540164	(10077452)	+	AluSx1	SINE/Alu	20	301	(11)	1889001
1725	13.3	4.8	0.0	chr19	48684224	48684479	(9933137)	C	AluSx1	SINE/Alu	(43)	269	1	1889363
2111	12.9	0.0	1.6	chr19	48874919	48875229	(9742387)	C	AluSz6	SINE/Alu	(5)	307	2	1889839
131	5.7	1.8	4.0	chr19	50444122	50444339	(8173277)	+	(CATC)n	Simple_repeat	1	222	(0)	1893522
35	35.9	0.0	2.2	chr19	50444340	50444497	(8173119)	+	(TCCA)n	Simple_repeat	2	156	(0)	1893523
268	22.8	1.0	0.9	chr19	50455950	50456421	(8161195)	+	(ATCC)n	Simple_repeat	1	471	(0)	1893562
280	17.0	0.0	1.9	chr19	50653501	50653554	(7964062)	C	MER5A1	DNA/hAT-Charlie	(38)	128	76	1894020
256	8.1	0.0	0.0	chr19	50653596	50653632	(7963984)	+	MER63D	DNA/hAT-Blackjack	1025	1061	(0)	1894021
69	0.0	0.0	0.0	chr19	50653683	50653741	(7963875)	+	(CA)n	Simple_repeat	1	59	(0)	1894022
1759	20.2	3.8	1.0	chr19	50653745	50654153	(7963463)	C	MER90a	LTR/ERV1	(110)	504	84	1894023
185	24.8	4.5	1.8	chr19	50978382	50979004	(7638612)	+	GA-rich	Low_complexity	1	651	(0)	1894742
864	26.4	1.8	0.0	chr19	51128867	51129086	(7488530)	C	MER58A	DNA/hAT-Charlie	(0)	224	1	1895057
2461	8.7	0.0	0.3	chr19	51129147	51129458	(7488158)	C	AluSc8	SINE/Alu	(0)	311	1	1895058
87	27.5	4.3	2.6	chr19	51688644	51689110	(6928506)	+	GA-rich	Low_complexity	1	475	(0)	1896048
2968	10.6	1.4	1.2	chr19	52410183	52410610	(6207006)	C	LTR3	LTR/ERVK	(3)	429	1	1897411
90	30.7	0.3	1.4	chr19	55528233	55528526	(3089090)	+	(TC)n	Simple_repeat	1	295	(0)	1903931
332	18.8	1.8	0.0	chr19	55567762	55568417	(3049199)	+	(GATG)n	Simple_repeat	1	668	(0)	1904038
24	13.1	2.4	0.0	chr19	56508212	56508253	(2109363)	+	(GT)n	Simple_repeat	1	43	(0)	1905912
1037	21.4	11.3	4.2	chr2	2056943	2057278	(240136251)	C	L1MD2	LINE/L1	(10)	6349	5987	1912795
183	17.8	4.0	2.6	chr2	9062930	9063380	(233130149)	+	GA-rich	Low_complexity	1	469	(0)	1922258
2420	7.0	1.3	0.3	chr2	10227760	10228060	(231965469)	C	AluY	SINE/Alu	(7)	304	1	1924426
489	25.2	0.4	1.4	chr2	10311756	10312946	(231880583)	+	(CATCAT)n	Simple_repeat	1	1196	(0)	1924554
168	20.6	6.1	2.1	chr2	10433170	10433708	(231759821)	+	(GT)n	Simple_repeat	1	572	(0)	1924759
33	0.0	0.0	0.0	chr2	10433716	10433743	(231759786)	+	(TG)n	Simple_repeat	1	28	(0)	1924760
513	32.0	3.8	3.5	chr2	19673559	19673764	(222519765)	C	MIRb	SINE/MIR	(38)	230	21	1939135
190	34.4	1.6	0.0	chr2	19673846	19673906	(222519623)	C	MIRc	SINE/MIR	(44)	224	163	1939136
463	16.7	4.9	2.2	chr2	20953426	20954327	(221239202)	+	(GT)n	Simple_repeat	1	929	(0)	1941112
2103	13.7	1.9	5.0	chr2	20954328	20954703	(221238826)	C	THE1B	LTR/ERVL-MaLR	(0)	364	1	1941113
168	25.4	0.2	0.7	chr2	26526117	26526476	(215667053)	+	(ATGG)n	Simple_repeat	4	361	(0)	1950088
27	9.8	0.0	0.0	chr2	26526490	26526533	(215666996)	+	(GATG)n	Simple_repeat	1	44	(0)	1950089
808	13.6	10.4	5.2	chr2	36433134	36433288	(205760241)	C	MER5A1	DNA/hAT-Charlie	(0)	166	3	1966050
834	23.6	0.0	1.7	chr2	36433552	36433732	(205759797)	C	MER5B	DNA/hAT-Charlie	(0)	178	1	1966051
60	1.8	0.0	0.0	chr2	39783555	39783610	(202409919)	+	(AC)n	Simple_repeat	1	56	(0)	1971743
243	25.0	1.6	0.0	chr2	39783622	39783681	(202409848)	+	MLT1N2	LTR/ERVL-MaLR	502	562	(0)	1971744
210	25.7	7.8	4.3	chr2	45898980	45899108	(196294421)	C	L2b	LINE/L2	(0)	3426	3239	1981456
14	34.7	3.4	5.3	chr2	46811748	46811894	(195381635)	+	(TCCCT)n	Simple_repeat	1	152	(0)	1982844
1948	16.9	1.0	0.3	chr2	47306781	47307087	(194886442)	+	AluJb	SINE/Alu	1	309	(3)	1983773
420	30.7	9.5	5.8	chr2	58240394	58240635	(183952894)	+	MIRc	SINE/MIR	3	254	(14)	1999507
32	0.0	0.0	0.0	chr2	61604849	61604883	(180588646)	+	(CT)n	Simple_repeat	1	35	(0)	2004712
48	0.0	0.0	0.0	chr2	61604884	61604924	(180588605)	+	(TG)n	Simple_repeat	1	41	(0)	2004713
258	27.1	2.8	0.0	chr2	63064380	63064449	(179129080)	+	L2a	LINE/L2	3354	3425	(1)	2007385
147	31.3	1.0	0.6	chr2	71577198	71577695	(170615834)	+	(AC)n	Simple_repeat	1	503	(0)	2020858
22	14.1	0.0	0.0	chr2	73684344	73684382	(168509147)	+	(TCC)n	Simple_repeat	1	39	(0)	2024031
386	30.4	14.1	1.5	chr2	73684430	73684633	(168508896)	C	LTR78	LTR/ERV1	(743)	561	328	2024030
1000	36.0	11.5	2.9	chr2	75098692	75099782	(167093747)	+	L2c	LINE/L2	287	1482	(1937)	2026487
201	24.7	4.3	11.9	chr2	84925970	84926070	(157267459)	C	MER91C	DNA/hAT-Tip100	(31)	109	17	2039689
647	21.0	11.4	3.6	chr2	85274582	85274774	(156918755)	+	MER63A	DNA/hAT-Blackjack	1	210	(0)	2040435
50	5.5	2.5	3.6	chr2	85666170	85666250	(156527279)	+	(GT)n	Simple_repeat	1	83	(0)	2041250
53	0.0	0.0	0.0	chr2	85742721	85742765	(156450764)	+	(TG)n	Simple_repeat	1	45	(0)	2041418
44	0.0	0.0	0.0	chr2	86332437	86332474	(155861055)	+	(AC)n	Simple_repeat	1	38	(0)	2042483
284	26.3	8.3	2.2	chr2	86808329	86808464	(155385065)	C	MIR3	SINE/MIR	(8)	200	56	2043241
420	30.6	0.2	0.3	chr2	100015822	100015917	(142177612)	+	(GTGGTG)n	Simple_repeat	1	93	(0)	2057275
34	8.6	0.0	0.0	chr2	100015918	100015967	(142177562)	+	(TGATGGTGA)n	Simple_repeat	1	50	(0)	2057276
420	30.6	0.2	0.3	chr2	100015968	100016590	(142176939)	+	(GTGGTG)n	Simple_repeat	4	628	(0)	2057277
420	30.6	0.2	0.3	chr2	100016646	100017109	(142176420)	+	(GTGGTG)n	Simple_repeat	5	469	(0)	2057279
38	0.0	0.0	0.0	chr2	117523564	117523596	(124669933)	+	(AC)n	Simple_repeat	1	33	(0)	2082425
910	19.8	5.5	4.6	chr2	119520908	119521124	(122672405)	+	MER20	DNA/hAT-Charlie	1	219	(0)	2085502
361	29.9	5.4	5.4	chr2	119521331	119521535	(122671994)	C	L2c	LINE/L2	(0)	3387	3183	2085503
450	27.7	10.9	3.1	chr2	121776702	121776928	(120416601)	C	MamGypLTR2b	LTR/Gypsy	(0)	922	676	2089320
85	28.4	0.0	0.0	chr2	121776940	121777162	(120416367)	+	(GT)n	Simple_repeat	1	223	(0)	2089321
3285	8.1	2.5	2.3	chr2	136071818	136072260	(106121269)	C	LTR3A	LTR/ERVK	(40)	444	1	2110122
2082	25.1	7.4	3.2	chr2	165825013	165825620	(76367909)	C	HAL1	LINE/L1	(658)	1849	1228	2150186
727	28.2	5.7	4.6	chr2	170218246	170218661	(71974868)	C	Charlie29a	DNA/hAT-Charlie	(7)	712	292	2156298
14	12.5	0.0	0.0	chr2	170218790	170218815	(71974714)	+	(ATT)n	Simple_repeat	1	26	(0)	2156299
701	19.8	8.6	10.5	chr2	195848252	195848499	(46345030)	C	L1MC4	LINE/L1	(463)	7579	7337	2191560
434	30.2	11.3	1.4	chr2	218319881	218320128	(23873401)	C	L2a	LINE/L2	(234)	3141	2876	2225860
232	37.2	1.1	1.1	chr2	218320127	218320221	(23873308)	C	L2c	LINE/L2	(9)	3366	3272	2225865
1437	7.1	0.0	0.0	chr2	218320238	218320420	(23873109)	C	L1MA5	LINE/L1	(3)	6297	6115	2225866
12	10.0	2.7	5.3	chr2	218864218	218864247	(23329282)	+	(TCCTCTT)n	Simple_repeat	1	29	(0)	2226942
2273	11.0	0.3	2.5	chr2	218864248	218864566	(23328963)	C	AluSx1	SINE/Alu	(0)	312	1	2226943
201	28.1	0.0	1.7	chr2	219661139	219661196	(22532333)	C	MIRb	SINE/MIR	(2)	266	210	2228286
447	26.6	10.1	6.1	chr2	219661146	219661199	(22532330)	C	L2a	LINE/L2	(10)	3416	3364	2228287
2148	23.6	8.2	13.5	chr2	219661200	219661916	(22531613)	C	LTR76	LTR/ERV1	(0)	675	1	2228288
7883	23.7	5.6	1.9	chr2	232471435	232474484	(9719045)	C	L1MA8	LINE/L1	(3791)	3774	835	2248712
28	5.0	0.0	4.4	chr2	237910571	237910615	(4282914)	+	(ACAGTCAC)n	Simple_repeat	1	45	(0)	2257031
166	16.5	5.4	1.0	chr20	30602007	30602394	(33841773)	+	(CATCAC)n	Simple_repeat	1	409	(0)	2305254
2973	9.3	2.8	1.2	chr20	32976655	32977076	(31467091)	C	LTR3	LTR/ERVK	(3)	429	1	2309677
749	33.5	7.0	5.3	chr20	38325904	38326229	(26117938)	C	L2b	LINE/L2	(236)	3139	2794	2321919
774	12.5	7.9	0.0	chr20	40470279	40470406	(23973761)	C	MER85	DNA/PiggyBac	(0)	139	1	2325850
13	23.8	3.9	8.3	chr20	40639555	40639658	(23804509)	+	(TCCAT)n	Simple_repeat	1	108	(0)	2326146
303	26.3	5.0	0.0	chr20	40883080	40883174	(23560993)	+	MLT1J2	LTR/ERVL-MaLR	56	155	(293)	2326620
118	17.7	1.8	0.0	chr20	44188394	44188621	(20255546)	+	(TG)n	Simple_repeat	1	232	(0)	2332876
154	19.5	1.9	0.0	chr20	45283033	45283349	(19160818)	+	(CA)n	Simple_repeat	1	323	(0)	2335297
13	12.1	3.6	0.0	chr20	46255707	46255734	(18188433)	+	(TCCT)n	Simple_repeat	1	29	(0)	2337297
397	22.3	2.6	0.4	chr20	61671513	61672311	(2771856)	+	(GGAT)n	Simple_repeat	2	818	(0)	2367640
726	17.7	1.0	0.6	chr20	63491620	63493004	(951163)	+	(GGAT)n	Simple_repeat	1	1399	(0)	2369618
193	21.2	0.0	0.0	chr20	63846951	63847337	(596830)	+	(CA)n	Simple_repeat	1	387	(0)	2370123
2508	17.7	4.2	1.4	chr20	64285514	64286699	(157468)	+	TAR1	Satellite/telo	1	1219	(1436)	2370665
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
18	8.7	0.0	0.0	chr21	16420333	16420357	(30289626)	+	(T)n	Simple_repeat	1	25	(0)	2380416
1915	25.7	6.9	4.3	chr21	29277275	29278207	(17431776)	+	L1ME2	LINE/L1	4485	5436	(728)	2398058
2026	12.5	1.4	0.0	chr21	32522647	32522935	(14187048)	+	AluSx1	SINE/Alu	1	293	(19)	2403368
254	7.8	9.5	2.5	chr21	33985074	33985631	(12724352)	+	(AC)n	Simple_repeat	1	611	(0)	2405938
253	22.4	13.3	0.0	chr21	34543977	34544060	(12165923)	+	MIRb	SINE/MIR	106	217	(51)	2406798
222	28.0	10.7	0.0	chr21	34544061	34544135	(12165848)	+	MER5A	DNA/hAT-Charlie	3	86	(103)	2406799
243	16.4	21.4	0.0	chr21	34544139	34544193	(12165790)	+	MLT1E3	LTR/ERVL-MaLR	1	70	(610)	2406800
96	14.9	0.9	4.7	chr21	34698357	34698569	(12011414)	+	GA-rich	Low_complexity	1	215	(0)	2407029
2176	11.6	0.0	1.0	chr21	34842788	34843090	(11866893)	+	AluSx4	SINE/Alu	2	301	(9)	2407243
143	35.9	0.3	1.1	chr21	34843091	34843533	(11866450)	+	(CA)n	Simple_repeat	1	441	(0)	2407244
39	13.3	4.0	0.0	chr21	35047477	35047514	(11662469)	+	(TC)n	Simple_repeat	1	41	(0)	2407529
56	0.0	0.0	0.0	chr21	35047515	35047562	(11662421)	+	(AC)n	Simple_repeat	1	48	(0)	2407530
39	13.3	4.0	0.0	chr21	35047563	35047598	(11662385)	+	(TC)n	Simple_repeat	2	37	(0)	2407531
64	27.0	0.9	4.1	chr21	35206612	35206625	(11503358)	+	(CCCT)n	Simple_repeat	1	17	(202)	2407770
12	29.0	2.0	0.0	chr21	35206626	35206675	(11503308)	+	(CTCTGT)n	Simple_repeat	1	51	(0)	2407771
64	27.0	0.9	4.1	chr21	35206676	35206828	(11503155)	+	(CCCT)n	Simple_repeat	18	219	(0)	2407770
1635	18.1	3.3	2.0	chr21	35704229	35704526	(11005457)	+	AluJr	SINE/Alu	6	307	(5)	2408513
259	19.2	2.7	5.2	chr21	35704528	35704576	(11005407)	+	polypurine	Low_complexity	1	42	(0)	2408514
37	0.0	0.0	0.0	chr21	35704577	35704610	(11005373)	+	(AGAA)n	Simple_repeat	1	34	(0)	2408515
259	19.2	2.7	5.2	chr21	35704611	35705309	(11004674)	+	GA-rich	Low_complexity	43	729	(0)	2408516
207	8.9	0.4	9.2	chr21	36257666	36258115	(10451868)	+	(TAGG)n	Simple_repeat	4	414	(0)	2409464
61	0.0	0.0	0.0	chr21	37846354	37846405	(8863578)	+	(TG)n	Simple_repeat	1	52	(0)	2412203
34	46.7	1.7	1.7	chr21	37982974	37982989	(8726994)	+	(CTTT)n	Simple_repeat	1	141	(159)	2412396
131	12.1	3.0	3.3	chr21	37982990	37983253	(8726730)	+	(CCTT)n	Simple_repeat	1	272	(0)	2412397
2057	14.5	2.2	0.8	chr21	38057018	38057378	(8652605)	+	MLT2D	LTR/ERVL	1	366	(48)	2412509
311	15.4	5.2	0.6	chr21	38057380	38058049	(8651934)	+	(TCTCTA)n	Simple_repeat	1	705	(0)	2412510
171	31.5	0.0	0.4	chr21	38115742	38116229	(8593754)	+	(CTA)n	Simple_repeat	1	488	(0)	2412599
1516	20.3	5.0	3.9	chr21	38224043	38224444	(8485539)	C	LTR76	LTR/ERV1	(0)	675	214	2412760
9711	13.6	1.7	0.8	chr21	38227979	38229403	(8480580)	C	HERV3-int	LTR/ERV1	(6987)	1439	2	2412761
1428	21.9	5.0	3.9	chr21	38229404	38229805	(8480178)	C	LTR76	LTR/ERV1	(0)	675	214	2412761
83	17.4	2.5	3.4	chr21	38245558	38245758	(8464225)	+	GA-rich	Low_complexity	1	206	(0)	2412774
393	25.8	3.2	0.8	chr21	38351476	38351596	(8358387)	+	MER5A1	DNA/hAT-Charlie	39	162	(4)	2412913
45	34.5	0.5	4.2	chr21	38351665	38351878	(8358105)	+	G-rich	Low_complexity	1	215	(0)	2412914
381	16.6	5.7	2.7	chr21	38622363	38623367	(8086616)	+	(AC)n	Simple_repeat	1	1062	(0)	2413252
836	27.0	12.3	3.1	chr21	38798222	38798611	(7911372)	C	L2a	LINE/L2	(4)	3422	2992	2413532
436	23.0	3.4	0.0	chr21	38798675	38798787	(7911196)	C	L2a	LINE/L2	(530)	2889	2773	2413532
274	17.6	3.7	3.1	chr21	38913709	38914463	(7795520)	+	(CACAACA)n	Simple_repeat	1	783	(0)	2413692
35	15.2	1.5	0.0	chr21	38914466	38914531	(7795452)	+	(CTCT)n	Simple_repeat	1	67	(0)	2413693
151	35.2	1.1	0.3	chr21	39012659	39013269	(7696714)	+	(CA)n	Simple_repeat	1	618	(0)	2413855
367	28.6	7.7	5.9	chr21	39469237	39469440	(7240543)	C	L1ME4b	LINE/L1	(2808)	3338	3131	2414647
255	29.5	7.2	0.0	chr21	39469443	39469635	(7240348)	C	L1MEd	LINE/L1	(2997)	3149	2942	2414656
455	24.8	0.0	0.9	chr21	39479061	39479195	(7230788)	+	FLAM_C	SINE/Alu	2	210	(92)	2414673
172	16.2	0.7	0.3	chr21	39479199	39479507	(7230476)	+	(GTGGTG)n	Simple_repeat	1	311	(0)	2414674
491	15.8	8.2	1.6	chr21	40139642	40140039	(6569944)	+	(TG)n	Simple_repeat	1	422	(0)	2415607
28	28.4	3.9	4.3	chr21	40196572	40196727	(6513256)	+	(TCTT)n	Simple_repeat	1	162	(0)	2415668
217	36.5	1.2	0.0	chr21	40717151	40717235	(5992748)	C	L2b	LINE/L2	(0)	3375	3290	2416432
2096	21.6	7.3	1.0	chr21	40717286	40717831	(5992152)	+	L1MB8	LINE/L1	5639	6177	(1)	2416433
717	14.0	5.7	2.0	chr21	40992700	40994324	(5715659)	+	(CA)n	Simple_repeat	1	1717	(0)	2416810
503	17.3	6.2	1.2	chr21	41584393	41585663	(5124320)	+	(AC)n	Simple_repeat	1	1350	(0)	2417685
117	23.0	5.2	1.3	chr21	41633656	41634020	(5075963)	+	(CATC)n	Simple_repeat	1	384	(0)	2417772
627	20.2	6.4	1.0	chr21	41828882	41830735	(4879248)	+	(CA)n	Simple_repeat	1	1973	(0)	2418047
261	18.2	3.6	0.2	chr21	42132092	42132648	(4577335)	+	(CATC)n	Simple_repeat	1	577	(0)	2418474
287	30.1	0.1	0.7	chr21	42410779	42411618	(4298365)	+	(CA)n	Simple_repeat	1	841	(0)	2418839
2182	17.9	2.4	0.7	chr21	42539998	42540414	(4169569)	C	LTR42	LTR/ERVL	(0)	495	72	2419016
159	22.3	3.1	1.2	chr21	42615884	42616301	(4093682)	+	(CA)n	Simple_repeat	1	431	(0)	2419096
375	17.5	4.2	2.3	chr21	42662444	42663352	(4046631)	+	(AC)n	Simple_repeat	1	947	(0)	2419152
133	15.6	11.9	5.1	chr21	42670034	42670824	(4039159)	+	(TTCACAC)n	Simple_repeat	1	885	(0)	2419161
2122	15.2	0.0	0.0	chr21	42677641	42677942	(4032041)	C	AluSx	SINE/Alu	(10)	302	1	2419171
275	26.0	1.1	5.8	chr21	42690914	42692006	(4017977)	+	(CACCAT)n	Simple_repeat	1	1105	(0)	2419182
188	26.9	1.6	0.0	chr21	42759371	42759887	(3950096)	+	(GT)n	Simple_repeat	1	525	(0)	2419281
345	13.1	7.0	2.9	chr21	43159811	43160676	(3549307)	+	(AC)n	Simple_repeat	1	927	(0)	2420006
347	16.4	4.2	2.5	chr21	43467672	43468554	(3241429)	+	(CCACACA)n	Simple_repeat	1	920	(0)	2420306
597	16.2	6.0	2.8	chr21	43604198	43605925	(3104058)	+	(AC)n	Simple_repeat	1	1782	(0)	2420490
419	16.5	8.1	2.6	chr21	43958234	43959528	(2750455)	+	(GT)n	Simple_repeat	1	1400	(0)	2421097
225	27.2	6.1	3.2	chr21	44893767	44893861	(1816122)	+	L2c	LINE/L2	3281	3378	(9)	2422289
260	21.1	6.2	1.2	chr21	44893868	44894035	(1815948)	+	HERVIP10FH-int	LTR/ERV1	822	998	(4104)	2422290
198	25.1	3.5	1.1	chr21	44904295	44904891	(1805092)	+	(CA)n	Simple_repeat	1	618	(0)	2422298
164	14.2	6.2	0.5	chr21	45474251	45474603	(1235380)	+	(GT)n	Simple_repeat	1	375	(0)	2422880
156	17.0	5.3	4.2	chr21	45476498	45476951	(1233032)	+	(TG)n	Simple_repeat	1	478	(0)	2422881
800	12.5	4.5	4.2	chr21	45634970	45636794	(1073189)	+	(GT)n	Simple_repeat	1	1907	(0)	2423026
399	20.7	1.4	1.2	chr21	46090632	46091503	(618480)	+	(GATGGT)n	Simple_repeat	1	884	(0)	2423499
262	30.9	1.6	0.8	chr21	46123493	46124324	(585659)	+	(GGAT)n	Simple_repeat	1	845	(0)	2423533
2437	11.9	19.3	13.8	chr22	19316621	19316963	(31501505)	+	LTR76	LTR/ERV1	232	675	(0)	2431792
2647	15.0	3.7	8.0	chr22	19316967	19317023	(31501445)	C	L1MC2	LINE/L1	(370)	5974	5924	2431794
2286	12.2	0.0	0.0	chr22	19317024	19317327	(31501141)	+	AluSz	SINE/Alu	5	308	(4)	2431795
2056	11.2	0.0	0.0	chr22	21574685	21574970	(29243498)	+	AluSg	SINE/Alu	1	286	(24)	2435452
3205	24.0	7.3	5.4	chr22	22995226	22996470	(27821998)	+	L1M4a1	LINE/L1	319	1841	(738)	2437626
29	6.2	5.9	0.0	chr22	23381158	23381208	(27437260)	+	(TGATGG)n	Simple_repeat	1	54	(0)	2438220
2413	8.7	0.0	1.6	chr22	25486795	25487106	(25331362)	C	AluY	SINE/Alu	(4)	307	1	2442311
483	26.3	5.5	7.1	chr22	25487107	25487207	(25331261)	+	L2a	LINE/L2	3330	3426	(0)	2442310
358	27.1	0.3	0.6	chr22	25487213	25488121	(25330347)	+	(GATG)n	Simple_repeat	1	912	(0)	2442312
140	23.1	5.2	0.2	chr22	26642409	26642814	(24175654)	+	GA-rich	Low_complexity	1	427	(0)	2444837
229	15.7	1.2	0.0	chr22	27008436	27008836	(23809632)	+	(CAT)n	Simple_repeat	1	406	(0)	2445696
292	27.5	9.1	1.6	chr22	27008860	27008981	(23809487)	+	L2a	LINE/L2	3293	3424	(2)	2445697
230	27.7	4.5	2.9	chr22	27092721	27093705	(23724763)	+	(AC)n	Simple_repeat	1	1029	(0)	2445905
27	29.1	6.4	1.8	chr22	27543503	27543658	(23274810)	+	(CCTT)n	Simple_repeat	1	166	(0)	2446931
471	30.7	2.8	1.6	chr22	27543661	27543918	(23274550)	+	L2b	LINE/L2	2929	3188	(199)	2446932
350	31.3	0.8	7.1	chr22	27816470	27816610	(23001858)	C	L2a	LINE/L2	(0)	3426	3295	2447569
74	34.9	1.8	2.9	chr22	27816638	27816973	(23001495)	+	(CCTC)n	Simple_repeat	1	342	(0)	2447570
217	24.1	7.9	0.0	chr22	29733705	29733762	(21084706)	+	MIRc	SINE/MIR	87	149	(119)	2451193
354	31.9	7.2	0.7	chr22	30180550	30180691	(20637777)	+	MIR	SINE/MIR	92	243	(19)	2452080
91	17.1	5.5	2.4	chr22	30180755	30180992	(20637476)	+	(CTTCC)n	Simple_repeat	1	251	(0)	2452081
2648	14.7	0.2	5.3	chr22	36161683	36162136	(14656332)	C	LTR3	LTR/ERVK	(1)	431	1	2464505
416	31.8	7.3	5.3	chr22	36643050	36643315	(14175153)	C	L1MC4	LINE/L1	(4986)	1229	958	2465541
16	9.3	0.0	0.0	chr22	36643316	36643338	(14175130)	+	(CT)n	Simple_repeat	1	23	(0)	2465542
506	28.2	0.0	0.0	chr22	36643339	36643455	(14175013)	C	L2a	LINE/L2	(9)	3417	3301	2465543
256	32.7	0.0	4.7	chr22	37400783	37400888	(13417580)	+	MIRc	SINE/MIR	159	259	(9)	2467139
318	34.4	2.6	1.3	chr22	37400938	37401090	(13417378)	C	L2b	LINE/L2	(2)	3373	3219	2467140
464	31.7	12.3	1.2	chr22	38958356	38958741	(11859727)	C	L1MC4	LINE/L1	(1206)	1369	948	2470606
74	10.0	5.3	0.0	chr22	38958744	38958874	(11859594)	+	(TTCT)n	Simple_repeat	1	138	(0)	2470607
12	23.2	5.5	5.2	chr22	41367390	41367462	(9451006)	+	(TGCC)n	Simple_repeat	1	77	(0)	2475750
317	34.5	0.7	1.6	chr22	43504027	43505231	(7313237)	+	(ATG)n	Simple_repeat	1	1213	(0)	2480358
619	26.8	9.1	0.0	chr22	45223380	45223569	(5594899)	+	MIR	SINE/MIR	35	243	(19)	2483475
3705	10.9	1.5	1.1	chr22	45290643	45291169	(5527299)	+	MER1A	DNA/hAT-Charlie	1	529	(0)	2483633
358	22.8	4.8	0.5	chr22	45291170	45291988	(5526480)	+	(TG)n	Simple_repeat	2	854	(0)	2483634
465	10.9	8.3	1.7	chr22	45979405	45980445	(4838023)	+	(CA)n	Simple_repeat	1	1127	(0)	2484826
397	27.3	0.3	0.7	chr22	45993237	45994265	(4824203)	+	(TGGTGG)n	Simple_repeat	1	1032	(0)	2484850
219	30.6	0.3	0.0	chr22	48055154	48055803	(2762665)	+	(TG)n	Simple_repeat	1	652	(0)	2487747
117	28.1	5.0	1.6	chr22	49458243	49458761	(1359707)	+	(GT)n	Simple_repeat	1	545	(0)	2489395
300	20.1	2.3	0.3	chr22	49595450	49596093	(1222375)	+	(TGATGG)n	Simple_repeat	1	659	(0)	2489557
1647	9.2	7.5	2.7	chr22	50337110	50340629	(477839)	+	(GT)n	Simple_repeat	1	3783	(0)	2490482
63	28.0	1.1	1.6	chr3	9557385	9557569	(188737990)	+	GA-rich	Low_complexity	1	187	(0)	2507442
705	25.7	7.6	2.2	chr3	9557596	9557818	(188737741)	+	MIRc	SINE/MIR	31	266	(2)	2507443
47	0.0	0.0	0.0	chr3	11475869	11475908	(186819651)	+	(AC)n	Simple_repeat	1	40	(0)	2511534
445	26.8	1.3	2.2	chr3	13868504	13869749	(184425810)	+	GA-rich	Low_complexity	11	1246	(0)	2516059
1202	18.3	9.3	6.2	chr3	14036383	14036893	(184258666)	C	LTR61	LTR/ERV1	(0)	559	1	2516238
3133	28.0	8.5	6.3	chr3	50707503	50708968	(147586591)	C	L1MA4	LINE/L1	(5342)	1507	6	2573432
3151	27.4	8.1	2.7	chr3	60672908	60673325	(137622234)	C	L1MEf	LINE/L1	(4283)	2132	1677	2589335
2458	9.9	0.0	2.2	chr3	60673326	60673688	(137621871)	+	L1PA10	LINE/L1	5803	6157	(11)	2589343
706	26.3	2.3	1.7	chr3	63467465	63467638	(134827921)	+	MIRb	SINE/MIR	85	259	(9)	2594086
468	18.8	0.0	2.6	chr3	73745369	73745483	(124550076)	C	Charlie26a	DNA/hAT-Charlie	(135)	190	79	2611678
1470	17.1	2.9	2.2	chr3	73745603	73745913	(124549646)	+	MER58B	DNA/hAT-Charlie	29	341	(0)	2611679
302	23.3	2.4	3.0	chr3	106435532	106436394	(91859165)	+	GA-rich	Low_complexity	1	884	(0)	2649526
215	31.0	0.0	2.7	chr3	107112669	107112741	(91182818)	C	L2a	LINE/L2	(2)	3424	3354	2650381
553	18.3	21.1	0.0	chr3	107970274	107970404	(90325155)	C	MER5A1	DNA/hAT-Charlie	(0)	166	1	2651621
2056	23.7	4.1	5.1	chr3	112984541	112985109	(85310450)	+	MER68	LTR/ERVL	1	563	(0)	2658544
67	19.0	2.7	0.7	chr3	115100328	115100474	(83195085)	+	GA-rich	Low_complexity	1	151	(0)	2661646
300	22.6	1.6	0.0	chr3	120454378	120454439	(77841120)	+	L1ME3Cz	LINE/L1	5440	5502	(692)	2669174
882	22.0	4.9	2.5	chr3	120454483	120454720	(77840839)	+	MIR	SINE/MIR	8	251	(11)	2669176
621	13.0	2.5	0.0	chr3	122977600	122977714	(75317845)	C	MLT2B4	LTR/ERVL	(438)	118	1	2672913
361	35.5	1.6	1.1	chr3	122977717	122977904	(75317655)	C	MER5A	DNA/hAT-Charlie	(0)	189	1	2672914
2237	10.9	0.0	0.7	chr3	123273525	123273818	(75021741)	+	AluSz	SINE/Alu	1	292	(20)	2673458
226	23.8	7.3	9.0	chr3	123273819	123273842	(75021717)	+	Tigger15a	DNA/TcMar-Tigger	594	609	(106)	2673457
104	18.9	0.5	0.0	chr3	125031654	125031849	(73263710)	+	(CA)n	Simple_repeat	1	197	(0)	2676316
1028	17.5	11.9	0.8	chr3	125031900	125032152	(73263407)	C	MER33	DNA/hAT-Charlie	(22)	302	18	2676317
258	13.7	3.4	1.4	chr3	126212128	126212625	(72082934)	+	GA-rich	Low_complexity	1	515	(0)	2678259
36	0.0	0.0	0.0	chr3	127139113	127139143	(71156416)	+	(GT)n	Simple_repeat	1	31	(0)	2679570
57	20.9	0.0	0.0	chr3	127139144	127139264	(71156295)	+	GA-rich	Low_complexity	1	121	(0)	2679571
15	0.0	0.0	0.0	chr3	127139270	127139286	(71156273)	+	(GT)n	Simple_repeat	1	17	(0)	2679572
17	21.9	1.7	4.9	chr3	127423649	127423708	(70871851)	+	(CTTC)n	Simple_repeat	1	61	(0)	2680007
307	30.1	12.2	5.0	chr3	127430952	127431133	(70864426)	+	L1MC	LINE/L1	4339	4535	(1611)	2680022
356	24.6	11.9	3.1	chr3	127431185	127431314	(70864245)	+	L1MEh	LINE/L1	35	177	(2058)	2680023
24	16.9	0.0	0.0	chr3	127431318	127431358	(70864201)	+	(GT)n	Simple_repeat	1	41	(0)	2680024
152	24.9	0.6	0.6	chr3	127806368	127806730	(70488829)	+	(GATG)n	Simple_repeat	1	365	(0)	2680706
611	33.5	8.4	0.4	chr3	128383373	128383612	(69911947)	C	MIR	SINE/MIR	(0)	262	2	2681648
461	33.1	5.0	4.0	chr3	128383764	128384037	(69911522)	C	MER102a	DNA/hAT-Charlie	(9)	321	45	2681649
462	23.3	0.1	0.0	chr3	128445327	128446393	(69849166)	+	(GGTGGT)n	Simple_repeat	1	1068	(0)	2681742
2810	14.5	1.9	0.0	chr3	128446394	128446813	(69848746)	+	MSTA	LTR/ERVL-MaLR	1	428	(0)	2681743
14138	15.9	3.5	4.9	chr3	128857767	128859679	(69435880)	C	HERV3-int	LTR/ERV1	(6538)	1888	2	2682563
2833	13.0	5.8	1.5	chr3	128859680	128860156	(69435403)	C	LTR4	LTR/ERV1	(0)	596	98	2682563
544	17.4	5.8	2.3	chr3	129369515	129370971	(68924588)	+	(GT)n	Simple_repeat	1	1541	(0)	2683610
474	31.1	6.7	4.0	chr3	131735368	131735615	(66559944)	C	MER103C	DNA/hAT-Charlie	(0)	297	43	2687369
28	33.1	2.5	5.3	chr3	132017230	132017432	(66278127)	+	A-rich	Low_complexity	1	208	(0)	2687819
133	19.1	4.3	1.9	chr3	132262987	132263333	(66032226)	+	(CA)n	Simple_repeat	1	362	(0)	2688185
21086	9.4	2.6	0.4	chr3	132849593	132855566	(65439993)	C	L1PB1	LINE/L1	(0)	6867	620	2689042
74	36.2	0.3	0.0	chr3	134056687	134056979	(64238580)	+	(GT)n	Simple_repeat	1	294	(0)	2690859
38	2.8	0.0	0.0	chr3	134374902	134374938	(63920621)	+	(TG)n	Simple_repeat	1	37	(0)	2691351
400	32.3	20.3	1.7	chr3	135326368	135326606	(62968953)	C	LTR78B	LTR/ERV1	(22)	1274	980	2692710
27	13.0	0.0	0.0	chr3	136802777	136802818	(61492741)	+	(TG)n	Simple_repeat	1	42	(0)	2695123
29	11.6	2.1	0.0	chr3	136802818	136802864	(61492695)	+	(GA)n	Simple_repeat	1	48	(0)	2695124
23	31.0	0.0	0.0	chr3	136802819	136802852	(61492707)	+	(TGAG)n	Simple_repeat	1	76	(0)	2695125
550	34.1	1.3	3.0	chr3	139318588	139318823	(58976736)	C	MIR	SINE/MIR	(18)	244	13	2699138
272	33.2	13.8	2.2	chr3	143134414	143134681	(55160878)	C	MamRTE1	LINE/RTE-BovB	(426)	3386	3083	2705240
737	32.9	9.2	4.4	chr3	159825614	159826155	(38469404)	C	L2b	LINE/L2	(1)	3374	2799	2728808
590	22.5	1.9	13.4	chr3	182533180	182533477	(15762082)	+	L1M5	LINE/L1	3803	4065	(2081)	2761173
232	31.2	14.8	0.7	chr3	182533496	182533640	(15761919)	+	L2a	LINE/L2	3219	3426	(0)	2761174
2451	17.3	5.9	1.9	chr3	183653335	183653805	(14641754)	C	LTR4	LTR/ERV1	(0)	596	106	2763106
906	17.8	0.6	0.0	chr3	188348612	188348774	(9946785)	+	MER5A1	DNA/hAT-Charlie	2	165	(1)	2771767
807	20.6	5.2	2.0	chr3	194326487	194328036	(3967523)	+	(CA)n	Simple_repeat	1	1630	(0)	2780940
634	29.6	2.1	0.4	chr4	1452299	1454217	(188760338)	+	(CAT)n	Simple_repeat	1	1959	(0)	2790215
497	30.5	0.6	0.6	chr4	1514072	1515491	(188699064)	+	(GATGAT)n	Simple_repeat	1	1428	(0)	2790273
2086	26.3	9.7	5.2	chr4	4874203	4875081	(185339474)	+	MER45C	DNA/hAT-Tip100	5	947	(6)	2795628
849	17.8	0.0	0.0	chr4	25223697	25223831	(164990724)	+	FLAM_C	SINE/Alu	1	135	(8)	2828528
914	20.6	0.0	2.7	chr4	25223832	25223883	(164990672)	+	AluJr	SINE/Alu	122	173	(139)	2828529
3505	12.0	5.9	10.9	chr4	25223884	25224596	(164989959)	C	LTR76	LTR/ERV1	(0)	675	1	2828530
108	29.8	2.5	2.2	chr4	42326432	42326838	(147887717)	+	GA-rich	Low_complexity	1	417	(0)	2855474
765	23.2	4.1	11.8	chr4	49510094	49510415	(140704140)	C	L1MB8	LINE/L1	(43)	6135	5840	2865174
69	6.2	0.0	0.0	chr4	49510486	49510569	(140703986)	+	(TCCT)n	Simple_repeat	1	84	(0)	2865175
1130	13.8	0.3	0.1	chr4	49514156	49515857	(140698698)	+	ACRO1	Satellite/acro	1	1705	(0)	2865184
2099	18.2	1.7	3.7	chr4	53571960	53572023	(136642532)	+	MLT1D	LTR/ERVL-MaLR	441	505	(0)	2867881
66	0.0	0.0	0.0	chr4	85827462	85827517	(104387038)	+	(GT)n	Simple_repeat	1	56	(0)	2913040
233	25.6	8.2	0.0	chr4	147453814	147453891	(42760664)	+	HAL1ME	LINE/L1	482	566	(1899)	2995615
30	0.0	0.0	0.0	chr4	147453902	147453927	(42760628)	+	(CA)n	Simple_repeat	1	26	(0)	2995616
36	11.1	0.0	3.2	chr4	147453929	147453990	(42760565)	+	(TC)n	Simple_repeat	1	62	(0)	2995617
33	0.0	0.0	0.0	chr4	147453999	147454026	(42760529)	+	(CA)n	Simple_repeat	1	28	(0)	2995618
267	30.4	8.8	4.5	chr4	147454064	147454549	(42760006)	+	L1M5	LINE/L1	4259	4767	(1379)	2995619
133	32.4	1.4	0.5	chr4	153221662	153222093	(36992462)	+	G-rich	Low_complexity	1	438	(0)	3004256
13	25.2	0.0	2.3	chr4	154491937	154491980	(35722575)	+	(CGCCTC)n	Simple_repeat	1	44	(0)	3006120
907	25.8	10.8	4.7	chr4	186216614	186216975	(3997580)	C	MLT1E2	LTR/ERVL-MaLR	(177)	450	64	3049361
299	15.8	9.9	1.9	chr5	856137	857095	(180681164)	+	(CA)n	Simple_repeat	1	1054	(0)	3055750
222	5.5	5.1	1.1	chr5	983588	983937	(180554322)	+	(GT)n	Simple_repeat	1	368	(0)	3055865
385	21.6	8.2	2.9	chr5	983987	984158	(180554101)	C	L1MEh	LINE/L1	(504)	1731	1550	3055866
332	22.9	6.7	3.0	chr5	1929062	1930478	(179607781)	+	(GTGTCGT)n	Simple_repeat	1	1512	(0)	3056791
351	23.6	1.0	0.0	chr5	2219018	2219801	(179318458)	+	(ATCC)n	Simple_repeat	1	792	(0)	3057046
616	18.1	7.6	3.3	chr5	3322298	3324431	(178213828)	+	(GT)n	Simple_repeat	1	2297	(0)	3058237
315	20.2	13.8	4.0	chr5	3488771	3488894	(178049365)	C	L1MEd	LINE/L1	(5886)	1200	1063	3058393
275	16.1	5.0	4.1	chr5	3584457	3585215	(177953044)	+	GA-rich	Low_complexity	1	797	(0)	3058488
724	10.8	5.3	2.2	chr5	6447182	6448619	(175089640)	+	(CA)n	Simple_repeat	1	1515	(0)	3061878
329	20.2	3.9	2.9	chr5	8208251	8209182	(173329077)	+	(TG)n	Simple_repeat	1	968	(0)	3064083
2337	9.2	1.3	0.0	chr5	31978438	31978731	(149559528)	+	AluY	SINE/Alu	1	298	(13)	3095954
3500	8.1	2.1	0.4	chr5	34842372	34842843	(146695416)	C	LTR3A	LTR/ERVK	(0)	484	5	3100496
1274	24.6	10.3	9.2	chr5	36438589	36439183	(145099076)	C	MLT1L	LTR/ERVL-MaLR	(7)	603	2	3102803
413	36.9	10.9	3.5	chr5	41746580	41747380	(139790879)	+	L2c	LINE/L2	2259	3123	(264)	3110783
194	33.3	10.4	0.0	chr5	41747412	41747480	(139790779)	C	L2c	LINE/L2	(13)	3362	3286	3110784
255	25.7	16.8	6.4	chr5	41747541	41747773	(139790486)	C	L2c	LINE/L2	(196)	3191	2930	3110784
18	0.0	0.0	0.0	chr5	54249673	54249692	(127288567)	+	(A)n	Simple_repeat	1	20	(0)	3121423
2379	15.3	3.7	1.0	chr5	54249951	54250366	(127287893)	C	MSTA	LTR/ERVL-MaLR	(0)	428	1	3121424
2305	12.3	0.3	0.0	chr5	55501504	55501803	(126036456)	C	AluSp	SINE/Alu	(12)	301	1	3123335
185	33.5	16.4	1.1	chr5	67297490	67297664	(114240595)	+	MamRTE1	LINE/RTE-BovB	3462	3668	(144)	3140635
3381	9.2	1.2	0.8	chr5	71571897	71572378	(109965881)	+	LTR3A	LTR/ERVK	1	484	(0)	3147692
22968	11.3	1.3	0.6	chr5	71573256	71577918	(109960341)	+	HERVK3-int	LTR/ERVK	591	7200	(2)	3147692
3478	7.8	1.4	0.8	chr5	71577921	71578401	(109959858)	+	LTR3A	LTR/ERVK	1	484	(0)	3147692
29	6.7	4.0	1.9	chr5	76257908	76257957	(105280302)	+	(GT)n	Simple_repeat	1	52	(0)	3154718
180	24.5	5.2	3.6	chr5	76257958	76258157	(105280102)	+	(TG)n	Simple_repeat	1	206	(0)	3154719
54	0.0	0.0	0.0	chr5	81736144	81736189	(99802070)	+	(AC)n	Simple_repeat	1	46	(0)	3163544
271	22.4	1.3	3.3	chr5	81736295	81736378	(99801881)	+	L2a	LINE/L2	3302	3426	(0)	3163545
293	28.0	3.1	0.0	chr5	91225283	91225375	(90312884)	C	MER94	DNA/hAT-Blackjack	(38)	96	1	3175833
24	40.0	5.7	0.4	chr5	102251918	102252165	(79286094)	+	GA-rich	Low_complexity	1	262	(0)	3189890
551	4.3	0.0	0.0	chr5	102314623	102314692	(79223567)	+	L1PA5	LINE/L1	6079	6148	(6)	3189990
218	31.1	6.2	7.8	chr5	110054519	110054633	(71483626)	+	MIR3	SINE/MIR	31	143	(65)	3199822
317	26.4	0.0	7.5	chr5	113480346	113480375	(68057884)	+	L1M5	LINE/L1	5695	5724	(400)	3204353
1354	23.2	17.2	8.1	chr5	113480376	113480770	(68057489)	+	Kanga1a	DNA/TcMar-Tc2	1	489	(265)	3204354
226	29.4	6.8	2.7	chr5	116970297	116970408	(64567851)	C	MLT1J2	LTR/ERVL-MaLR	(21)	423	307	3208958
535	27.7	1.7	0.0	chr5	116970489	116970629	(64567630)	C	MLT1J2	LTR/ERVL-MaLR	(279)	233	52	3208958
2152	12.3	5.3	0.8	chr5	122327405	122327765	(59210494)	+	THE1D	LTR/ERVL-MaLR	4	381	(0)	3215757
660	25.4	2.9	6.9	chr5	122430379	122430600	(59107659)	C	MIRb	SINE/MIR	(35)	233	4	3215883
713	27.2	8.9	3.9	chr5	124206655	124206910	(57331349)	+	MER102c	DNA/hAT-Charlie	62	331	(0)	3218363
16652	9.3	1.2	1.9	chr5	124497446	124499999	(57038260)	+	HERVH-int	LTR/ERV1	1	2537	(5176)	3218723
3059	11.0	0.4	0.9	chr5	124500001	124500451	(57037808)	+	HERVH-int	LTR/ERV1	2539	2987	(4726)	3218724
34	7.3	0.0	0.0	chr5	133467253	133467295	(48070964)	+	(TG)n	Simple_repeat	1	43	(0)	3230998
529	30.0	10.5	4.9	chr5	134876899	134877606	(46660653)	C	L2b	LINE/L2	(3)	3372	2626	3233570
2229	10.2	0.0	2.0	chr5	134877608	134877774	(46660485)	C	AluSz	SINE/Alu	(13)	299	137	3233571
302	32.6	0.0	1.1	chr5	136622807	136622896	(44915363)	+	Charlie17a	DNA/hAT-Charlie	52	140	(77)	3235890
807	15.5	1.4	4.1	chr5	143657947	143658127	(37880132)	C	MER58A	DNA/hAT-Charlie	(2133)	287	1	3248043
233	32.8	5.8	0.9	chr5	154223470	154223583	(27314676)	C	L2c	LINE/L2	(160)	3227	3108	3266695
2481	6.6	0.0	0.3	chr5	154835577	154835880	(26702379)	C	AluY	SINE/Alu	(8)	303	1	3268144
375	33.1	4.3	0.0	chr5	158120323	158120455	(23417804)	C	MIR3	SINE/MIR	(54)	154	16	3274061
555	29.7	0.5	3.2	chr5	169945449	169945636	(11592623)	C	MIRb	SINE/MIR	(15)	253	71	3292663
13	30.0	3.6	0.0	chr5	170782671	170782725	(10755534)	+	(CCCTC)n	Simple_repeat	1	57	(0)	3294287
280	32.9	4.0	0.4	chr5	172437428	172437564	(9100695)	C	MIRb	SINE/MIR	(127)	141	1	3297432
1574	14.2	11.7	1.1	chr5	172940998	172941264	(8596995)	+	AluSz6	SINE/Alu	2	300	(12)	3298568
761	27.4	6.7	1.2	chr5	172941310	172941549	(8596710)	C	MIRb	SINE/MIR	(1)	267	14	3298569
1103	22.0	3.3	2.5	chr5	176994226	176994559	(4543700)	+	L1M5	LINE/L1	5306	5632	(546)	3306357
2513	14.4	10.6	7.9	chr5	176994560	176995117	(4543142)	C	LTR4	LTR/ERV1	(0)	596	22	3306366
12	31.1	1.8	0.0	chr5	177404202	177404256	(4134003)	+	G-rich	Low_complexity	1	56	(0)	3307346
2359	10.8	0.3	0.0	chr5	178163453	178163758	(3374501)	+	AluSx1	SINE/Alu	1	307	(5)	3308688
34	37.0	2.5	3.8	chr5	178163763	178164044	(3374215)	+	A-rich	Low_complexity	1	289	(0)	3308689
32	21.9	5.1	3.2	chr6	307248	307364	(170498615)	+	(CTTC)n	Simple_repeat	1	123	(0)	3314671
11	10.3	2.7	7.9	chr6	1170878	1170914	(169635065)	+	(GGTCTG)n	Simple_repeat	1	38	(0)	3315734
34	0.0	0.0	0.0	chr6	11043405	11043433	(159762546)	+	(AC)n	Simple_repeat	1	29	(0)	3330623
19	0.0	0.0	0.0	chr6	11043468	11043488	(159762491)	+	(AC)n	Simple_repeat	1	21	(0)	3330623
156	16.0	2.9	0.6	chr6	12654176	12654485	(158151494)	+	(ATCT)n	Simple_repeat	1	319	(0)	3332993
2192	23.4	3.4	2.5	chr6	12654523	12655074	(158150905)	+	MER77	LTR/ERVL	41	597	(7)	3332994
265	28.9	1.2	2.4	chr6	14968266	14968350	(155837629)	C	L2a	LINE/L2	(15)	3411	3328	3336893
160	24.8	2.3	4.2	chr6	16969645	16970176	(153835803)	+	GA-rich	Low_complexity	1	544	(0)	3340346
902	19.4	0.0	1.2	chr6	17656463	17656622	(153149357)	C	AluJb	SINE/Alu	(100)	212	55	3341531
403	28.1	16.3	0.0	chr6	24283888	24284143	(146521836)	+	L2a	LINE/L2	3121	3426	(0)	3351643
1260	29.5	14.8	1.8	chr6	26280711	26281501	(144524478)	C	L2a	LINE/L2	(206)	3220	2313	3354947
21667	10.3	3.4	1.0	chr6	28305814	28312276	(142493703)	C	L1PB1	LINE/L1	(6)	6861	258	3358428
2045	14.2	15.5	0.3	chr6	32559720	32560085	(138245894)	C	LTR3	LTR/ERVK	(0)	432	1	3365077
2518	15.0	2.8	0.2	chr6	32566925	32567345	(138238634)	C	LTR3	LTR/ERVK	(0)	432	1	3365077
974	17.0	5.0	2.9	chr6	34070977	34073549	(136732430)	+	(CA)n	Simple_repeat	1	2702	(0)	3367583
239	31.2	4.0	0.0	chr6	35182034	35182129	(135623850)	C	L2a	LINE/L2	(14)	3412	3313	3369862
21944	8.0	2.6	0.8	chr6	36083045	36088440	(134717539)	+	L1PA10	LINE/L1	4	5516	(815)	3371779
2447	9.1	0.0	0.0	chr6	36088441	36088737	(134717242)	+	AluY	SINE/Alu	1	297	(14)	3371780
3920	13.4	3.1	0.6	chr6	41278830	41279451	(129526528)	+	MER51C	LTR/ERV1	1	638	(2)	3380882
193	34.9	0.0	0.0	chr6	41449899	41449961	(129356018)	C	L2b	LINE/L2	(7)	3419	3357	3381182
684	29.8	5.5	2.0	chr6	41450055	41450301	(129355678)	+	MIR	SINE/MIR	6	261	(1)	3381183
661	31.2	9.2	5.2	chr6	41455876	41456301	(129349678)	+	MER65A	LTR/ERV1	1	445	(0)	3381194
1892	19.3	5.4	2.0	chr6	41456302	41456369	(129349610)	+	MLT1C	LTR/ERVL-MaLR	400	466	(1)	3381193
57	0.0	0.0	0.0	chr6	41456391	41456439	(129349540)	+	(AC)n	Simple_repeat	1	49	(0)	3381195
554	28.8	11.3	1.4	chr6	44104992	44105213	(126700766)	+	MIRb	SINE/MIR	16	262	(6)	3386579
566	31.4	3.8	7.7	chr6	46452305	46452604	(124353375)	C	MLT1I	LTR/ERVL-MaLR	(5)	406	119	3390212
41	17.1	3.5	0.0	chr6	46734307	46734391	(124071588)	+	GA-rich	Low_complexity	1	88	(0)	3390625
16	0.0	4.2	4.0	chr6	46734392	46734415	(124071564)	+	(GT)n	Simple_repeat	1	25	(0)	3390626
94	0.0	1.1	1.1	chr6	46734416	46734503	(124071476)	+	(GA)n	Simple_repeat	1	89	(0)	3390627
2324	11.0	1.0	1.0	chr6	46734541	46734849	(124071130)	+	AluSc8	SINE/Alu	1	309	(2)	3390628
2182	12.6	0.7	0.7	chr6	73392303	73392603	(97413376)	C	AluSq2	SINE/Alu	(12)	301	1	3423321
308	18.8	3.9	1.2	chr6	79089569	79090289	(91715690)	+	(CCTT)n	Simple_repeat	1	749	(0)	3430789
4008	12.8	1.5	6.3	chr6	88031106	88031815	(82774164)	+	LTR76	LTR/ERV1	1	675	(0)	3442608
2337	15.2	3.8	1.4	chr6	88031820	88032370	(82773609)	C	L1MC2	LINE/L1	(630)	5714	5143	3442606
269	20.2	3.5	7.7	chr6	110320012	110320102	(60485877)	+	L2a	LINE/L2	3340	3426	(0)	3473475
326	22.2	0.0	0.0	chr6	111080739	111080801	(59725178)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	328	3474990
1010	14.7	3.5	2.4	chr6	111080803	111080972	(59725007)	C	FAM	SINE/Alu	(13)	172	1	3474991
1982	14.8	1.2	2.4	chr6	111080975	111081312	(59724667)	C	MLT1B	LTR/ERVL-MaLR	(52)	338	5	3474990
16739	16.5	2.9	3.6	chr6	111161463	111163146	(59642833)	C	LTR25-int	LTR/ERV1	(1)	7187	5545	3475139
51	0.0	0.0	0.0	chr6	112665806	112665849	(58140130)	+	(AG)n	Simple_repeat	1	44	(0)	3477406
30	18.5	0.0	0.0	chr6	112665850	112665904	(58140075)	+	(TG)n	Simple_repeat	1	55	(0)	3477407
292	26.4	4.4	3.3	chr6	112665942	112666031	(58139948)	C	LTR78B	LTR/ERV1	(1181)	115	25	3477405
1321	17.9	0.4	3.0	chr6	118500019	118500254	(52305725)	+	AluJb	SINE/Alu	1	230	(82)	3485249
2880	13.1	1.2	2.9	chr6	118500262	118500749	(52305230)	+	LTR3A	LTR/ERVK	5	484	(0)	3485250
2523	8.3	0.0	0.0	chr6	127008289	127008588	(43797391)	+	AluSg	SINE/Alu	1	300	(10)	3496305
849	27.5	9.3	10.9	chr6	131132615	131133491	(39672488)	C	L1MC5a	LINE/L1	(480)	2297	1437	3501893
441	32.5	8.0	4.8	chr6	134036303	134036638	(36769341)	+	L2c	LINE/L2	3040	3387	(0)	3506053
268	17.7	1.8	1.7	chr6	150308800	150309363	(20496616)	+	GA-rich	Low_complexity	1	574	(0)	3530013
917	23.7	5.1	3.6	chr6	156585769	156586064	(14219915)	C	MER51A	LTR/ERV1	(0)	640	341	3539669
308	22.6	0.0	0.0	chr6	156586126	156586205	(14219774)	C	MER51A	LTR/ERV1	(260)	380	323	3539669
127	23.1	1.8	5.3	chr6	158626777	158627222	(12178757)	+	(CTCACC)n	Simple_repeat	1	454	(0)	3542841
1022	25.4	5.3	8.4	chr6	161774292	161774382	(9031597)	+	MLT1J2	LTR/ERVL-MaLR	7	86	(362)	3547204
60	0.0	0.0	0.0	chr6	161774383	161774433	(9031546)	+	(CA)n	Simple_repeat	1	51	(0)	3547205
1022	25.4	5.3	8.4	chr6	161774434	161774792	(9031187)	+	MLT1J2	LTR/ERVL-MaLR	87	442	(6)	3547204
532	29.5	1.0	1.1	chr6	168714476	168716180	(2089799)	+	(ATG)n	Simple_repeat	1	1722	(0)	3555726
4804	21.1	3.9	2.2	chr6	169995172	169996705	(809274)	+	L1MB2	LINE/L1	4215	5776	(395)	3557051
145	5.3	8.6	0.7	chr6	169996706	169996984	(808995)	+	(TG)n	Simple_repeat	1	303	(0)	3557052
426	21.2	2.1	1.9	chr7	653837	654886	(158691087)	+	(ATCACC)n	Simple_repeat	1	1072	(0)	3558661
613	27.6	8.8	3.5	chr7	5692841	5693118	(153652855)	C	L1ME4b	LINE/L1	(57)	835	541	3567612
1337	18.2	0.5	0.0	chr7	5693119	5693338	(153652635)	+	MER58A	DNA/hAT-Charlie	4	224	(0)	3567613
1099	32.9	3.7	4.0	chr7	32937731	32938354	(126407619)	+	LTR49-int	LTR/ERV1	535	1156	(6419)	3607033
70	29.2	2.8	1.5	chr7	42832415	42832669	(116513304)	+	(CA)n	Simple_repeat	1	262	(0)	3621743
2411	9.7	0.3	0.6	chr7	98394831	98395141	(60950832)	+	AluSx1	SINE/Alu	2	311	(1)	3702478
1696	13.6	0.7	9.6	chr7	98555291	98555411	(60790562)	C	AluJr	SINE/Alu	(187)	125	19	3702869
210	36.4	4.3	2.9	chr7	98555447	98555582	(60790391)	+	L2b	LINE/L2	3238	3375	(0)	3702872
27	6.1	0.0	0.0	chr7	100478316	100478350	(58867623)	+	(AG)n	Simple_repeat	1	35	(0)	3706675
60	0.0	0.0	0.0	chr7	100478351	100478401	(58867572)	+	(GT)n	Simple_repeat	1	51	(0)	3706676
1228	23.4	1.8	2.0	chr7	106563284	106563610	(52782363)	+	L1MC4a	LINE/L1	7079	7411	(471)	3717752
402	28.3	5.9	0.8	chr7	114851538	114851665	(44494308)	+	MER5A	DNA/hAT-Charlie	54	188	(1)	3728937
2122	23.1	11.5	3.9	chr7	115724285	115725031	(43620942)	+	L1ME3A	LINE/L1	5361	6171	(2)	3730119
573	23.1	0.7	0.9	chr7	128887355	128888702	(30457271)	+	(CA)n	Simple_repeat	1	1358	(0)	3748101
13050	12.6	2.5	4.6	chr7	128898356	128900883	(30445090)	+	PABL_A-int	LTR/ERV1	2640	5943	(3)	3748111
483	14.3	0.0	6.2	chr7	129553954	129554065	(29791908)	C	L1MB7	LINE/L1	(0)	6184	6080	3749385
451	23.8	6.5	3.4	chr7	129554066	129554203	(29791770)	+	MIRb	SINE/MIR	123	268	(0)	3749384
280	30.2	8.6	0.0	chr7	132430274	132430379	(26915594)	+	L2b	LINE/L2	3260	3375	(0)	3754393
25	17.4	9.5	0.0	chr7	133977651	133977734	(25368239)	+	(TTTGG)n	Simple_repeat	1	92	(0)	3756756
34	0.0	0.0	0.0	chr7	133977739	133977767	(25368206)	+	(TG)n	Simple_repeat	1	29	(0)	3756757
260	30.6	0.0	3.0	chr7	133977771	133977871	(25368102)	C	Charlie15a	DNA/hAT-Charlie	(17)	207	110	3756758
1172	21.9	4.4	4.2	chr7	133977911	133978324	(25367649)	+	MER57B2	LTR/ERV1	3	510	(0)	3756759
920	30.4	3.3	3.8	chr7	134545554	134545950	(24800023)	+	L2a	LINE/L2	2996	3390	(36)	3757668
55	26.3	0.0	0.7	chr7	134545952	134546098	(24799875)	+	(ATGG)n	Simple_repeat	1	147	(0)	3757669
66	2.7	2.7	0.0	chr7	134546102	134546176	(24799797)	+	(GGAT)n	Simple_repeat	1	77	(0)	3757670
3753	7.9	1.4	0.2	chr7	134546177	134546683	(24799290)	+	LTR10D	LTR/ERV1	1	513	(0)	3757671
124	27.5	0.3	1.2	chr7	142148114	142148444	(17197529)	+	(CAC)n	Simple_repeat	1	332	(0)	3770285
328	16.4	7.8	3.8	chr7	150003183	150004275	(9341698)	+	(GT)n	Simple_repeat	1	1178	(0)	3781444
219	20.5	5.0	2.3	chr7	152912336	152912994	(6432979)	+	(GT)n	Simple_repeat	1	692	(0)	3786187
402	7.2	10.2	2.5	chr7	157298928	157299839	(2046134)	+	(TG)n	Simple_repeat	1	981	(0)	3792224
811	16.2	4.3	0.2	chr7	157764827	157766507	(1579466)	+	(ATCC)n	Simple_repeat	1	1754	(0)	3792726
318	31.2	2.7	0.6	chr7	157766586	157766722	(1579251)	C	MIR	SINE/MIR	(41)	227	80	3792727
536	27.5	1.3	0.7	chr7	158013340	158014607	(1331366)	+	(TCCA)n	Simple_repeat	1	1278	(0)	3792926
324	28.6	6.6	5.3	chr8	364428	364637	(144773999)	+	MIRb	SINE/MIR	30	240	(28)	3794749
1373	25.9	9.5	6.2	chr8	8625706	8626233	(136512403)	+	MLT1H	LTR/ERVL-MaLR	1	547	(2)	3805037
39	6.7	0.0	0.0	chr8	16826065	16826111	(128312525)	+	(AC)n	Simple_repeat	1	47	(0)	3817319
2199	16.2	10.3	0.0	chr8	18613689	18614115	(126524521)	+	LTR06	LTR/ERV1	1	476	(0)	3819888
497	30.7	12.7	4.2	chr8	18614116	18614318	(126524318)	+	L2a	LINE/L2	3139	3367	(59)	3819887
162	25.4	1.1	1.9	chr8	21040415	21040880	(124097756)	+	(TCTCTC)n	Simple_repeat	1	471	(0)	3823812
2325	11.5	0.0	1.0	chr8	30141354	30141666	(114996970)	+	AluSx1	SINE/Alu	2	311	(1)	3839135
199	20.3	1.7	5.4	chr8	36915924	36916503	(108222133)	+	GA-rich	Low_complexity	1	558	(0)	3849567
50	4.0	0.0	0.0	chr8	37100767	37100818	(108037818)	+	(AC)n	Simple_repeat	1	52	(0)	3849829
1783	15.5	0.0	1.4	chr8	38497263	38497559	(106641077)	+	AluJb	SINE/Alu	1	293	(19)	3852399
2171	12.8	0.3	0.3	chr8	42679533	42679837	(102458799)	C	AluSz	SINE/Alu	(7)	305	1	3859269
472	20.6	3.7	1.5	chr8	43124334	43124466	(102014170)	C	L1M1	LINE/L1	(4085)	3481	3346	3860154
279	18.0	3.9	0.0	chr8	43124467	43124516	(102014120)	C	5S	rRNA	(59)	62	11	3860157
3971	12.4	2.5	4.8	chr8	43124520	43125207	(102013429)	C	LTR76	LTR/ERV1	(3)	672	1	3860158
16	17.8	5.4	5.1	chr8	92072430	92072485	(53066151)	+	(TA)n	Simple_repeat	1	59	(0)	3923380
289	28.4	8.3	0.0	chr8	93448415	93448502	(51690134)	C	L2b	LINE/L2	(0)	3375	3280	3925228
738	24.6	11.1	4.5	chr8	93973974	93974213	(51164423)	C	L1ME4a	LINE/L1	(393)	5985	5731	3926126
26	0.0	0.0	0.0	chr8	109576043	109576070	(35562566)	+	(A)n	Simple_repeat	1	28	(0)	3951032
209	31.5	11.2	1.9	chr8	141769014	141769167	(3369469)	+	MIRc	SINE/MIR	1	148	(60)	4004105
204	31.0	0.8	0.0	chr8	142495865	142496474	(2642162)	+	(TGGA)n	Simple_repeat	1	615	(0)	4004970
311	20.6	1.0	10.2	chr9	36148842	36148949	(102245768)	C	L2b	LINE/L2	(39)	3336	3239	4060048
438	29.7	9.8	1.8	chr9	70830700	70830868	(67563849)	+	MIRb	SINE/MIR	52	261	(7)	4083816
248	23.9	8.2	0.0	chr9	75197637	75197703	(63197014)	+	L2b	LINE/L2	3303	3375	(0)	4090708
5975	17.1	1.0	0.8	chr9	75644563	75645534	(62749183)	C	LTR1D	LTR/ERV1	(1)	974	1	4091271
4414	17.1	1.7	1.8	chr9	87815600	87816478	(50578239)	+	L1MA6	LINE/L1	4230	5107	(1036)	4110041
730	15.0	7.7	2.8	chr9	89881040	89883090	(48511627)	+	(CA)n	Simple_repeat	1	2209	(0)	4113091
134	28.0	2.4	1.9	chr9	92184029	92184493	(46210224)	+	(CCAT)n	Simple_repeat	1	476	(0)	4116309
45	2.4	0.0	0.0	chr9	94694371	94694413	(43700304)	+	(TG)n	Simple_repeat	1	43	(0)	4120116
12	4.9	0.0	4.3	chr9	116156579	116156601	(22238116)	+	(AAAT)n	Simple_repeat	1	23	(0)	4156818
633	28.2	18.9	1.8	chr9	126681224	126681621	(11713096)	+	L2a	LINE/L2	2349	2823	(596)	4176822
2382	11.0	0.0	0.0	chr9	126681622	126681930	(11712787)	+	AluSx1	SINE/Alu	4	312	(0)	4176823
582	12.4	7.5	2.5	chr9	130344245	130345650	(8049067)	+	(GT)n	Simple_repeat	1	1512	(0)	4184841
61	27.5	2.5	4.9	chr9	132799481	132799758	(5594959)	+	(CA)n	Simple_repeat	1	285	(0)	4189526
187	26.2	2.7	4.1	chr9	133791900	133792638	(4602079)	+	(TG)n	Simple_repeat	1	759	(0)	4191086
59	0.0	0.0	0.0	chr9	135393701	135393750	(3000967)	+	(AC)n	Simple_repeat	1	50	(0)	4193148
727	13.5	6.3	2.7	chr9	136307255	136309004	(2085713)	+	(AC)n	Simple_repeat	1	1861	(0)	4194247
246	17.1	4.5	1.8	chr9	136309751	136310333	(2084384)	+	(AC)n	Simple_repeat	1	609	(0)	4194250
124	26.7	0.6	0.6	chr9	136983926	136984254	(1410463)	+	(GT)n	Simple_repeat	1	331	(0)	4195073
716	14.8	3.7	3.7	chr9	137924609	137924797	(469920)	C	L1MD1	LINE/L1	(1573)	4573	4385	4196334
3114	18.3	6.5	0.2	chr9	137924800	137925438	(469279)	C	MER54B	LTR/ERVL	(0)	793	112	4196335
2977	11.6	0.7	0.5	chr9	137943558	137944000	(450717)	C	LTR3A	LTR/ERVK	(40)	444	1	4196363
514	33.0	12.0	1.6	chr9	138044843	138045162	(349555)	C	L2b	LINE/L2	(0)	3375	3018	4196474
339	24.1	7.6	9.5	chr9	138045336	138045578	(349139)	C	L2b	LINE/L2	(673)	2746	2509	4196474
180	22.9	0.0	14.1	chrX	15874798	15874868	(140166027)	C	L3	LINE/CR1	(3887)	212	152	4385109
923	23.8	12.1	3.0	chrX	15874938	15875266	(140165629)	C	L2a	LINE/L2	(129)	3297	2935	4385110
50	32.0	3.6	4.6	chrX	25013957	25014292	(131026603)	+	(TTTC)n	Simple_repeat	1	348	(0)	4400468
177	24.5	4.8	2.1	chrX	39398177	39398774	(116642121)	+	(TTCC)n	Simple_repeat	1	627	(0)	4420460
3075	8.9	1.0	16.1	chrX	65932453	65933055	(90107840)	C	LTR10F	LTR/ERV1	(0)	511	1	4453076
23	0.0	0.0	0.0	chrX	68902046	68902070	(87138825)	+	(TG)n	Simple_repeat	1	25	(0)	4457180
37	0.0	0.0	0.0	chrX	68902071	68902102	(87138793)	+	(GA)n	Simple_repeat	1	32	(0)	4457181
39	43.0	3.4	0.9	chrX	68937534	68937943	(87102952)	+	(TGGTAA)n	Simple_repeat	1	424	(0)	4457270
167	12.7	4.4	2.2	chrX	68990961	68991302	(87049593)	+	(CCTT)n	Simple_repeat	1	357	(0)	4457352
237	26.1	1.5	0.0	chrX	68991306	68991370	(87049525)	C	Charlie15b	DNA/hAT-Charlie	(17)	1044	979	4457353
35	38.8	0.6	0.0	chrX	69068194	69068375	(86972520)	+	GA-rich	Low_complexity	1	183	(0)	4457482
40	0.0	0.0	0.0	chrX	69116207	69116240	(86924655)	+	(AC)n	Simple_repeat	1	34	(0)	4457583
42	17.0	6.0	6.7	chrX	69285584	69285766	(86755129)	+	GA-rich	Low_complexity	1	194	(0)	4457938
349	22.8	4.2	8.1	chrX	69387187	69387310	(86653585)	+	MIR3	SINE/MIR	21	139	(69)	4458144
237	17.6	5.6	3.8	chrX	69387311	69387363	(86653532)	+	Plat_L3	LINE/CR1	3528	3581	(5)	4458145
34	0.0	0.0	0.0	chrX	71072907	71072935	(84967960)	+	(AC)n	Simple_repeat	1	29	(0)	4460755
49	2.2	0.0	0.0	chrX	71073029	71073074	(84967821)	+	(CA)n	Simple_repeat	1	46	(0)	4460756
31	13.7	6.0	0.0	chrX	71146104	71146153	(84894742)	+	(CT)n	Simple_repeat	1	52	(0)	4460882
75	1.5	0.0	0.0	chrX	71146154	71146221	(84894674)	+	(CA)n	Simple_repeat	1	68	(0)	4460883
31	13.7	6.0	0.0	chrX	71146222	71146237	(84894658)	+	(CT)n	Simple_repeat	1	18	(0)	4460884
31	34.6	1.6	0.0	chrX	71146349	71146475	(84894420)	+	(TG)n	Simple_repeat	1	129	(0)	4460885
555	22.4	0.0	0.0	chrX	72048843	72048940	(83991955)	+	AluJr4	SINE/Alu	137	234	(78)	4462596
66	18.6	1.5	0.7	chrX	72048962	72049097	(83991798)	+	GA-rich	Low_complexity	1	138	(0)	4462597
15	21.4	4.4	0.0	chrX	73944061	73944105	(82096790)	+	A-rich	Low_complexity	1	47	(0)	4464970
30	12.2	4.8	0.0	chrX	73944168	73944229	(82096666)	+	(ACGGCA)n	Simple_repeat	1	65	(0)	4464971
10519	20.1	6.3	4.6	chrX	74514038	74516045	(81524850)	+	L1MDa	LINE/L1	48	2122	(4511)	4465763
1617	20.6	2.6	4.9	chrX	115255025	115255298	(40785597)	+	L1ME1	LINE/L1	5160	5421	(758)	4515169
1805	18.4	0.0	3.7	chrX	115255299	115255619	(40785276)	+	AluJr4	SINE/Alu	1	309	(3)	4515170
2211	16.1	0.0	8.1	chrX	120760551	120760918	(35279977)	C	MSTC	LTR/ERVL-MaLR	(48)	380	43	4523542
69	2.9	0.0	0.0	chrX	120760925	120760994	(35279901)	+	(TTCC)n	Simple_repeat	1	70	(0)	4523544
12	28.5	5.6	3.2	chrX	120760995	120761006	(35279889)	+	(TTCTC)n	Simple_repeat	1	41	(0)	4523545
17	10.8	0.0	0.0	chrX	120761007	120761036	(35279859)	+	(CCCTC)n	Simple_repeat	1	30	(0)	4523546
27	2.8	2.6	2.5	chrX	120761038	120761076	(35279819)	+	(CCTTC)n	Simple_repeat	1	40	(0)	4523547
12	28.5	5.6	3.2	chrX	120761077	120761122	(35279773)	+	(TTCTC)n	Simple_repeat	3	51	(0)	4523548
682	17.4	2.7	0.0	chrX	120761128	120761236	(35279659)	C	AluJo	SINE/Alu	(200)	112	1	4523549
285	10.9	8.0	0.0	chrX	120761242	120761287	(35279608)	C	MSTC	LTR/ERVL-MaLR	(378)	50	1	4523542
289	29.6	12.2	4.4	chrX	135396594	135396706	(20644189)	+	MIR	SINE/MIR	1	126	(142)	4544269
258	28.3	7.3	3.0	chrX	135396831	135396961	(20643934)	+	MamGypLTR1c	LTR/Gypsy	667	803	(0)	4544270
688	26.2	4.5	0.6	chrX	140723231	140725499	(15315396)	+	(AC)n	Simple_repeat	1	2370	(0)	4552693
168	24.4	0.2	0.0	chrX	153512484	153512877	(2528018)	+	(CACACA)n	Simple_repeat	1	395	(0)	4570350
261	26.5	0.3	0.6	chrX	153513268	153513937	(2526958)	+	(TG)n	Simple_repeat	1	672	(0)	4570352
137	19.4	3.0	0.0	chrX	153901424	153901722	(2139173)	+	(CA)n	Simple_repeat	1	308	(0)	4570916
320	12.2	0.5	0.5	chrX	156008859	156009450	(31445)	+	(GT)n	Simple_repeat	1	595	(0)	4574064