633	13.8	3.3	0.0	chr1	788635	788750	(248167672)	C	MER67C	LTR/ERV1	(0)	711	592	1025
2198	11.0	0.7	1.3	chr1	1016061	1016360	(247940062)	C	AluSx1	SINE/Alu	(14)	298	1	1282
1063	10.4	0.0	0.0	chr1	1016361	1016495	(247939927)	C	AluSz	SINE/Alu	(176)	136	2	1283
30	13.8	4.7	0.0	chr1	3872615	3872678	(245083744)	+	(GGCCCT)n	Simple_repeat	1	67	(0)	4487
140	18.5	0.7	0.0	chr1	4302955	4302983	(244653439)	+	(TTCCA)n	Simple_repeat	1	31	(0)	5121
64	6.2	1.1	1.1	chr1	4302984	4303071	(244653351)	+	(GTTCC)n	Simple_repeat	1	89	(0)	5122
140	18.5	0.7	0.0	chr1	4303072	4303312	(244653110)	+	(TTCCA)n	Simple_repeat	2	242	(0)	5123
756	19.4	9.8	6.4	chr1	8075720	8076126	(240880296)	C	MER34C2	LTR/ERV1	(0)	787	173	10891
3466	10.8	2.4	2.4	chr1	8076139	8076463	(240879959)	+	LTR9D	LTR/ERV1	1	330	(315)	10892
13	16.9	0.0	0.0	chr1	16352430	16352456	(232603966)	+	(CGC)n	Simple_repeat	1	27	(0)	27273
17	23.9	3.1	4.5	chr1	16352475	16352538	(232603884)	+	(GC)n	Simple_repeat	1	66	(0)	27274
472	26.4	13.1	0.6	chr1	19811103	19811262	(229145160)	C	MIRb	SINE/MIR	(50)	218	36	34551
340	28.2	7.4	2.7	chr1	19811528	19811695	(229144727)	C	MIRb	SINE/MIR	(79)	189	14	34552
17	12.1	2.4	4.8	chr1	21368546	21368586	(227587836)	+	(CCTT)n	Simple_repeat	1	42	(0)	37782
116	6.4	3.6	3.0	chr1	28846822	28847016	(220109406)	+	(TTTC)n	Simple_repeat	1	202	(0)	55304
19	24.3	4.6	0.0	chr1	28846996	28847060	(220109362)	+	(CCTTCC)n	Simple_repeat	1	68	(0)	55305
2239	10.7	0.0	0.0	chr1	28847061	28847351	(220109071)	C	AluSq	SINE/Alu	(22)	291	1	55306
384	22.9	10.9	1.6	chr1	28914017	28914140	(220042282)	C	MIR3	SINE/MIR	(11)	197	61	55497
13	8.9	0.0	3.9	chr1	28914599	28914624	(220041798)	+	(TCGC)n	Simple_repeat	1	26	(0)	55498
16	32.2	1.2	2.5	chr1	28914778	28914857	(220041565)	+	(GGC)n	Simple_repeat	1	81	(0)	55499
1972	14.2	3.5	0.7	chr1	30775928	30776230	(218180192)	+	AluSz	SINE/Alu	1	312	(0)	59036
170	2.3	0.0	6.2	chr1	30776231	30776487	(218179935)	+	(GGAAA)n	Simple_repeat	1	257	(0)	59037
34002	7.4	6.1	4.9	chr1	32447430	32448197	(216508225)	C	HERVIP10FH-int	LTR/ERV1	(3988)	1114	214	62853
6250	13.3	3.1	2.2	chr1	32448198	32449195	(216507227)	+	LTR13	LTR/ERVK	1	1007	(0)	62858
460	21.9	2.4	0.0	chr1	36688178	36688300	(212268122)	C	LTR16C	LTR/ERVL	(0)	489	364	71377
20	37.5	2.9	0.9	chr1	36688301	36688404	(212268018)	+	A-rich	Low_complexity	1	107	(0)	71378
705	25.1	5.3	4.8	chr1	36689033	36689318	(212267104)	C	LTR16C	LTR/ERVL	(87)	451	149	71379
17	26.2	2.8	2.7	chr1	42167707	42167778	(206788644)	+	G-rich	Low_complexity	1	74	(0)	82038
13	21.9	0.0	2.6	chr1	45303630	45303668	(203652754)	+	(GGAGCC)n	Simple_repeat	1	39	(0)	87710
259	26.7	9.4	5.6	chr1	51648707	51648849	(197307573)	+	MIR1_Amn	SINE/MIR	68	216	(14)	99177
186	33.8	1.9	7.9	chr1	51648938	51649101	(197307321)	+	L2	LINE/L2	2796	2949	(470)	99178
1316	19.4	2.5	0.0	chr1	60347721	60347988	(188608434)	+	L1MB7	LINE/L1	5910	6184	(0)	116400
12	17.6	4.0	5.8	chr1	63594013	63594062	(185362360)	+	(CTCTCC)n	Simple_repeat	1	52	(0)	122314
19	4.0	0.0	0.0	chr1	64524781	64524806	(184431616)	+	(ATG)n	Simple_repeat	1	26	(0)	124046
508	32.4	4.0	2.0	chr1	64524816	64525058	(184431364)	C	MIRb	SINE/MIR	(24)	244	1	124047
1653	15.9	14.0	4.4	chr1	64564005	64564610	(184391812)	+	MER34C2	LTR/ERV1	3	555	(0)	124117
2254	0.4	0.0	0.0	chr1	65443957	65444209	(183512213)	C	L1HS	LINE/L1	(0)	6155	5903	125807
1362	20.7	6.3	13.7	chr1	65444210	65444580	(183511842)	+	LTR49	LTR/ERV1	207	571	(24)	125806
10167	11.0	4.4	1.4	chr1	67066962	67068493	(181887929)	+	THE1C-int	LTR/ERVL-MaLR	1	1580	(0)	128170
3958	15.3	4.5	3.2	chr1	67249146	67251170	(181705252)	C	MER57-int	LTR/ERV1	(2208)	5329	3592	128486
20959	14.9	2.4	1.4	chr1	68547222	68553335	(180403087)	+	L1PA11	LINE/L1	7	7035	(574)	130825
2050	17.7	2.2	0.0	chr1	68553336	68553691	(180402731)	+	THE1B	LTR/ERVL-MaLR	1	364	(0)	130826
5278	15.8	16.2	2.9	chr1	74465107	74466247	(174490175)	+	LTR12E	LTR/ERV1	1	1322	(0)	138692
599	11.1	0.0	0.0	chr1	77779898	77779987	(171176435)	+	5S	rRNA	1	90	(31)	143484
18	7.7	0.0	0.0	chr1	77888599	77888626	(171067796)	+	(CGG)n	Simple_repeat	1	28	(0)	143695
9436	7.7	11.4	2.2	chr1	80052604	80054032	(168902390)	C	LTR12C	LTR/ERV1	(0)	1579	3	146673
324	20.3	0.0	7.8	chr1	80054033	80054080	(168902342)	+	HERVL18-int	LTR/ERVL	5224	5267	(780)	146672
250	17.8	0.0	0.0	chr1	80054081	80054125	(168902297)	+	HERVL18-int	LTR/ERVL	5946	5990	(57)	146672
2237	14.6	2.2	0.6	chr1	80054238	80054588	(168901834)	+	LTR18A	LTR/ERVL	1	357	(0)	146674
550	29.9	4.9	10.4	chr1	84282895	84283260	(164673162)	+	MLT1I	LTR/ERVL-MaLR	65	409	(2)	152308
11	20.8	0.0	2.9	chr1	89633168	89633202	(159323220)	+	(CGCGGC)n	Simple_repeat	1	35	(0)	160109
14	8.1	0.0	6.7	chr1	92784627	92784656	(156171766)	+	(GGC)n	Simple_repeat	1	30	(0)	165065
15	11.2	0.0	3.2	chr1	92784787	92784821	(156171601)	+	(CCGC)n	Simple_repeat	1	33	(0)	165066
2511	17.5	12.3	7.1	chr1	93807172	93807760	(155148662)	C	LTR48	LTR/ERV1	(0)	787	183	166862
2408	8.4	0.7	1.6	chr1	95086560	95086868	(153869554)	+	AluSp	SINE/Alu	1	306	(7)	168824
3108	18.3	10.4	5.0	chr1	95086869	95087329	(153869093)	+	LTR48	LTR/ERV1	278	786	(1)	168823
10819	12.1	0.6	0.3	chr1	98865862	98867423	(150088999)	C	THE1B-int	LTR/ERVL-MaLR	(0)	1580	14	174029
146	15.8	4.7	4.4	chr1	100065435	100065575	(148890847)	+	(CCTTTC)n	Simple_repeat	1	141	(0)	175897
26	0.0	0.0	0.0	chr1	100065576	100065600	(148890822)	+	(TTCCC)n	Simple_repeat	1	25	(0)	175898
146	15.8	4.7	4.4	chr1	100065601	100065868	(148890554)	+	(CCTTTC)n	Simple_repeat	6	270	(0)	175899
513	15.8	1.3	0.0	chr1	100065896	100065971	(148890451)	C	7SLRNA	srpRNA	(243)	77	1	175900
2153	13.5	0.3	1.0	chr1	100350912	100351222	(148605200)	+	AluSz6	SINE/Alu	1	309	(3)	176445
322	32.6	0.0	0.0	chr1	100351338	100351432	(148604990)	+	MamSINE1	SINE/tRNA-RTE	195	289	(1)	176446
1863	17.3	4.3	14.8	chr1	102147241	102147863	(146808559)	C	MER34C2	LTR/ERV1	(0)	555	1	178954
10814	19.3	5.1	6.6	chr1	104725375	104725762	(144230660)	+	L1MA8	LINE/L1	4587	4966	(1325)	182001
743	19.3	0.0	0.7	chr1	104725763	104725897	(144230525)	+	AluJo	SINE/Alu	1	134	(178)	182004
10814	19.3	5.1	6.6	chr1	104725898	104726399	(144230023)	+	L1MA8	LINE/L1	4967	5460	(831)	182001
216	25.9	10.4	1.8	chr1	112466539	112466652	(136489770)	+	MIR	SINE/MIR	144	268	(0)	193161
5761	10.4	2.8	0.1	chr1	121508562	121509827	(127446595)	+	L1PA14	LINE/L1	4860	6161	(0)	207148
661	25.6	5.9	0.0	chr1	121509819	121510041	(127446381)	+	L1M1	LINE/L1	2850	3086	(4479)	207150
2597	8.4	5.0	1.9	chr1	144101293	144106919	(104849503)	+	(TGGCTGGCT)n	Simple_repeat	1	5911	(0)	208844
659	31.5	18.5	2.7	chr1	145794144	145794481	(103161941)	+	L2a	LINE/L2	2724	3097	(329)	211534
440	7.8	0.0	0.0	chr1	145794503	145794578	(103161844)	C	AluSz6	SINE/Alu	(0)	312	232	211536
5363	8.6	0.4	2.1	chr1	145794629	145794735	(103161687)	C	LTR12_	LTR/ERV1	(0)	688	590	211537
2639	8.0	0.0	0.0	chr1	145794736	145795037	(103161385)	+	AluY	SINE/Alu	1	302	(9)	211538
24	15.6	1.1	0.0	chr1	148522481	148522534	(100433888)	+	G-rich	Low_complexity	1	54	(0)	215837
1272	7.9	0.0	0.6	chr1	148522601	148522766	(100433656)	+	U1	snRNA	1	165	(0)	215838
59	9.6	1.1	0.0	chr1	155244786	155244875	(93711547)	+	(GAGA)n	Simple_repeat	1	91	(0)	227608
333	28.7	20.9	3.1	chr1	155245279	155245432	(93710990)	C	L2a	LINE/L2	(10)	3416	3210	227609
19	23.8	0.0	0.0	chr1	156728593	156728641	(92227781)	+	(GCG)n	Simple_repeat	1	49	(0)	230643
614	16.2	0.9	0.9	chr1	158157433	158157538	(90798884)	C	MLT1D	LTR/ERVL-MaLR	(35)	470	365	232760
2486	18.5	2.4	5.4	chr1	158157551	158158102	(90798320)	C	MER41B	LTR/ERV1	(38)	596	100	232761
205	32.6	2.3	2.3	chr1	161750401	161750488	(87205934)	C	L2c	LINE/L2	(62)	3325	3238	238034
553	32.8	6.2	6.0	chr1	162146208	162146710	(86809712)	C	L1MEb	LINE/L1	(5486)	584	81	238658
305	32.2	2.4	0.7	chr1	165408385	165408515	(83547907)	C	L2c	LINE/L2	(8)	3367	3237	243581
17	29.0	0.0	1.7	chr1	172533154	172533213	(76423209)	+	(GGC)n	Simple_repeat	1	60	(0)	254353
13	13.2	0.0	0.0	chr1	172533420	172533444	(76422978)	+	(GAA)n	Simple_repeat	1	25	(0)	254354
242	33.1	7.0	2.2	chr1	181385307	181385442	(67570980)	+	UCON2	DNA?	346	488	(97)	267900
15	37.3	0.0	3.4	chr1	181385686	181385773	(67570649)	+	(TTCTT)n	Simple_repeat	1	88	(0)	267901
74	22.9	2.3	3.1	chr1	181385774	181385901	(67570521)	+	(CCTT)n	Simple_repeat	3	223	(0)	267902
18	23.7	0.0	6.8	chr1	183472319	183472363	(65484059)	+	(CCCTCT)n	Simple_repeat	1	70	(0)	271188
17	18.8	0.0	0.0	chr1	183472364	183472394	(65484028)	+	(C)n	Simple_repeat	1	31	(0)	271189
113	5.6	8.4	1.7	chr1	184351647	184351862	(64604560)	+	A-rich	Low_complexity	1	230	(0)	272490
202	36.1	0.0	4.0	chr1	184640323	184640423	(64315999)	+	L2c	LINE/L2	3282	3378	(9)	272965
430	23.1	9.9	5.7	chr1	185049897	185050089	(63906333)	C	LTR50	LTR/ERVL	(589)	206	5	273643
1054	27.3	10.0	3.3	chr1	186630840	186631267	(62325155)	C	LTR67B	LTR/ERVL	(160)	460	1	275863
8650	14.9	5.6	1.1	chr1	196668845	196670352	(52286070)	+	THE1D-int	LTR/ERVL-MaLR	1	1580	(0)	288952
2122	13.9	3.9	0.8	chr1	196670353	196670721	(52285701)	+	THE1D	LTR/ERVL-MaLR	1	381	(0)	288952
30	22.1	6.7	0.0	chr1	200039128	200039217	(48917205)	+	GA-rich	Low_complexity	1	96	(0)	293530
255	31.0	0.0	0.0	chr1	207828720	207828790	(41127632)	C	Tigger16a	DNA/TcMar-Tigger	(762)	195	125	307178
2046	22.3	4.8	0.8	chr1	207828874	207829357	(41127065)	C	L1M5	LINE/L1	(844)	5302	4799	307179
2095	12.4	1.7	0.0	chr1	208265892	208266181	(40690241)	C	AluSz	SINE/Alu	(17)	295	1	307866
2834	11.9	4.3	5.1	chr1	209951021	209951532	(39004890)	C	L1MA7	LINE/L1	(28)	6263	5756	310430
1438	22.4	5.1	14.3	chr1	213207136	213207669	(35748753)	+	LTR49	LTR/ERV1	13	509	(86)	315880
2199	12.5	0.3	0.0	chr1	213207670	213207972	(35748450)	C	AluSx1	SINE/Alu	(8)	304	1	315881
2041	16.8	12.9	2.7	chr1	214768274	214768854	(34187568)	+	LTR48	LTR/ERV1	1	771	(16)	318172
720	25.6	4.2	0.5	chr1	220093697	220093900	(28862522)	+	MER33	DNA/hAT-Charlie	2	213	(111)	325673
17	4.9	0.0	0.0	chr1	220093909	220093929	(28862493)	+	(AT)n	Simple_repeat	1	21	(0)	325674
12	19.3	0.0	5.1	chr1	220094064	220094102	(28862320)	+	(CCGCC)n	Simple_repeat	1	39	(0)	325675
574	14.7	3.3	0.0	chr1	224011568	224011683	(24944739)	C	MER67C	LTR/ERV1	(0)	711	592	331633
1987	14.1	1.1	1.1	chr1	224011691	224016553	(24939869)	+	(AATGG)n	Simple_repeat	1	4914	(0)	331634
6434	26.0	7.3	5.7	chr1	225296360	225299131	(23657291)	C	L1MA5A	LINE/L1	(3958)	3608	731	333759
1690	19.1	0.7	0.3	chr1	226013244	226013526	(22942896)	+	AluJr	SINE/Alu	1	284	(28)	335013
239	30.6	18.0	0.3	chr1	226013692	226014038	(22942384)	+	L2	LINE/L2	2413	2834	(585)	335014
1184	20.3	1.1	0.7	chr1	228518309	228518581	(20437841)	C	L1M4	LINE/L1	(1959)	4187	3914	338852
1420	16.4	13.5	0.4	chr1	228518597	228518865	(20437557)	+	AluJb	SINE/Alu	1	312	(0)	338853
20	30.9	1.0	5.0	chr1	228555066	228555165	(20401257)	+	(TG)n	Simple_repeat	1	101	(0)	338872
826	7.2	8.3	0.0	chr1	228555793	228555903	(20400519)	+	5S	rRNA	1	121	(0)	338873
2327	9.1	0.0	0.0	chr1	228621129	228621435	(20334987)	+	AluY	SINE/Alu	1	307	(4)	338912
40	29.6	0.0	0.0	chr1	228635559	228635667	(20320755)	+	(CA)n	Simple_repeat	1	109	(0)	338951
63	31.5	1.7	0.8	chr1	228635679	228635919	(20320503)	+	GA-rich	Low_complexity	1	245	(0)	338952
804	23.4	10.5	5.0	chr1	228876163	228876441	(20079981)	C	MLT1G1	LTR/ERVL-MaLR	(2)	577	282	339336
1685	22.8	24.5	1.4	chr1	228958610	228959181	(19997241)	C	LTR48	LTR/ERV1	(19)	768	61	339458
4696	15.6	2.9	7.9	chr1	228959200	228959783	(19996639)	C	MER4D	LTR/ERV1	(9)	894	361	339459
33	0.0	3.1	0.0	chr1	229807727	229807758	(19148664)	+	(CA)n	Simple_repeat	1	33	(0)	340933
481	32.2	2.5	3.4	chr1	229807926	229808131	(19148291)	C	MamGypsy2-I	LTR/Gypsy	(6)	4160	3957	340934
431	29.4	10.1	0.5	chr1	229808130	229808317	(19148105)	C	MamGypsy2-I	LTR/Gypsy	(3468)	698	491	340934
2908	17.4	10.2	5.0	chr1	230233673	230234414	(18722008)	C	LTR48	LTR/ERV1	(2)	785	1	341580
12	14.6	0.0	5.9	chr1	231308323	231308356	(17648066)	+	(GCCTTT)n	Simple_repeat	1	34	(0)	343262
24	18.8	1.6	3.1	chr1	231421889	231421952	(17534470)	+	(GGC)n	Simple_repeat	1	65	(0)	343471
12	13.9	0.0	0.0	chr1	231422196	231422219	(17534203)	+	(GCC)n	Simple_repeat	1	24	(0)	343472
18	20.7	1.6	4.8	chr1	231422324	231422384	(17534038)	+	G-rich	Low_complexity	1	62	(0)	343473
12	17.2	4.9	2.3	chr1	231422410	231422450	(17533972)	+	(CCTCGG)n	Simple_repeat	1	43	(0)	343474
619	24.4	7.7	0.6	chr1	231422715	231422871	(17533551)	C	MIRb	SINE/MIR	(96)	172	4	343475
56	0.0	0.0	0.0	chr1	231756517	231756564	(17199858)	+	(GA)n	Simple_repeat	1	48	(0)	344020
335	30.3	4.3	1.6	chr1	231756670	231756806	(17199616)	+	MIR3	SINE/MIR	35	169	(39)	344021
1802	19.0	3.3	4.2	chr1	232193310	232193936	(16762486)	C	MER34C2	LTR/ERV1	(0)	555	1	344636
24	12.3	2.3	0.0	chr1	233295575	233295618	(15660804)	+	(GCC)n	Simple_repeat	1	45	(0)	346165
12	19.3	0.0	5.1	chr1	234600126	234600164	(14356258)	+	G-rich	Low_complexity	1	39	(0)	348157
37	15.3	0.0	1.4	chr1	234600189	234600258	(14356164)	+	(GCCCC)n	Simple_repeat	1	70	(0)	348158
594	27.6	20.0	2.0	chr1	235411759	235412157	(13544265)	+	L2	LINE/L2	1723	2211	(1208)	349695
61	4.6	2.0	4.0	chr1	235412158	235412256	(13544166)	+	(TCCCC)n	Simple_repeat	1	101	(0)	349696
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
4604	14.0	6.1	1.3	chr1	237237350	237237905	(11718517)	+	MER4D	LTR/ERV1	1	593	(310)	352990
56	0.0	0.0	8.5	chr1	237237906	237237987	(11718435)	+	(TTTCC)n	Simple_repeat	1	82	(0)	352991
1657	11.7	5.0	6.0	chr1	237237989	237238270	(11718152)	C	AluJb	SINE/Alu	(33)	279	1	352992
223	31.9	0.0	1.4	chr1	243403992	243404064	(5552358)	C	MIRb	SINE/MIR	(170)	98	27	362538
16	15.3	2.0	6.0	chr1	244048506	244048554	(4907868)	+	GA-rich	Low_complexity	1	50	(0)	363520
34	19.5	0.0	0.0	chr1	244048593	244048664	(4907758)	+	(C)n	Simple_repeat	1	72	(0)	363521
26	27.2	3.7	1.8	chr1	244048665	244048698	(4907724)	+	(CGCC)n	Simple_repeat	4	113	(0)	363522
22	25.3	1.2	3.7	chr1	244048798	244048877	(4907545)	+	G-rich	Low_complexity	1	81	(0)	363523
16	16.6	0.0	0.0	chr1	244175044	244175070	(4781352)	+	(C)n	Simple_repeat	1	27	(0)	363689
45	2.2	0.0	0.0	chr1	244175168	244175213	(4781209)	+	(CAGTCCA)n	Simple_repeat	1	46	(0)	363690
18	0.0	0.0	0.0	chr1	247104643	247104662	(1851760)	+	(TA)n	Simple_repeat	1	20	(0)	368655
8798	3.3	24.6	0.0	chr1	248944224	248945548	(10874)	+	TAR1	Satellite/telo	314	2069	(42)	371028
676	4.0	0.7	3.4	chr1	248945549	248946422	(10000)	+	(AGGGTT)n	Simple_repeat	1	880	(0)	371029
1816	30.3	11.7	3.9	chr10	4637279	4638486	(129158936)	+	L2	LINE/L2	1740	3054	(365)	376742
244	24.8	7.3	5.6	chr10	4638567	4638673	(129158749)	C	HAL1	LINE/L1	(485)	2022	1914	376741
299	30.6	2.7	0.9	chr10	16296898	16297006	(117500416)	C	SVA_B	Retroposon/SVA	(1050)	333	223	395533
757	17.0	0.0	0.0	chr10	16296912	16297017	(117500405)	+	AluJo	SINE/Alu	13	118	(194)	395534
137	24.5	3.1	1.2	chr10	16297026	16297415	(117500007)	+	A-rich	Low_complexity	1	402	(0)	395535
3705	15.1	8.0	2.0	chr10	21290269	21291007	(112506415)	+	LTR48	LTR/ERV1	1	787	(0)	403335
382	23.9	0.7	2.8	chr10	23010098	23011095	(110786327)	+	(TTCCC)n	Simple_repeat	1	1005	(0)	406122
2572	19.9	11.0	7.3	chr10	23089562	23090288	(110707134)	C	LTR48	LTR/ERV1	(30)	757	1	406255
350	8.6	1.8	8.7	chr10	23330962	23331762	(110465660)	+	G-rich	Low_complexity	1	815	(0)	406629
2387	9.0	0.0	0.0	chr10	23422448	23422748	(110374674)	C	AluY	SINE/Alu	(9)	302	2	406859
1255	14.2	0.9	7.1	chr10	23422749	23422809	(110374613)	C	AluJr4	SINE/Alu	(170)	142	88	406858
271	21.1	5.3	6.6	chr10	23422841	23422916	(110374506)	+	FRAM	SINE/Alu	72	146	(20)	406860
22	23.1	6.7	2.1	chr10	23422917	23423006	(110374416)	+	G-rich	Low_complexity	1	96	(0)	406861
199	32.5	0.0	4.7	chr10	23423030	23423114	(110374308)	+	MIR	SINE/MIR	183	262	(6)	406862
107	36.3	1.9	2.8	chr10	27752972	27753498	(106043924)	+	(TCCC)n	Simple_repeat	1	537	(0)	413928
15	22.6	0.0	5.8	chr10	27998931	27998982	(105798440)	+	(CGC)n	Simple_repeat	1	52	(0)	414304
3329	14.7	13.3	2.2	chr10	31614984	31615667	(102181755)	C	LTR48	LTR/ERV1	(0)	787	16	420506
1544	18.3	5.0	1.7	chr10	34462566	34462855	(99334567)	+	AluJb	SINE/Alu	4	303	(9)	424751
235	14.8	6.2	1.4	chr10	34462857	34463400	(99334022)	+	GA-rich	Low_complexity	1	578	(0)	424752
38	10.4	0.0	0.0	chr10	42165831	42165892	(91631530)	+	(GAATG)n	Simple_repeat	1	62	(0)	431764
85	9.6	1.3	1.3	chr10	42165959	42166108	(91631314)	+	(GGAAT)n	Simple_repeat	1	152	(0)	431765
819	25.6	7.1	1.0	chr10	42232333	42235823	(91561599)	+	G-rich	Low_complexity	1	3740	(0)	431856
16	23.5	6.4	2.4	chr10	45672536	45672613	(88124809)	+	(CGCCAG)n	Simple_repeat	1	83	(0)	436407
13	36.1	0.0	2.6	chr10	45672635	45672657	(88124765)	+	(GCCC)n	Simple_repeat	1	76	(0)	436408
14	26.7	0.0	3.8	chr10	45672658	45672710	(88124712)	+	(CGCT)n	Simple_repeat	1	53	(0)	436409
12	20.4	0.0	0.0	chr10	46030399	46030427	(87766995)	+	GA-rich	Low_complexity	1	29	(0)	437045
858	22.8	7.0	1.3	chr10	51832604	51833003	(81964419)	C	MER34C2	LTR/ERV1	(47)	508	226	445449
13725	17.0	6.8	0.9	chr10	56962451	56964930	(76832492)	+	L1PA16	LINE/L1	1	2635	(4218)	452132
8728	13.7	4.4	8.4	chr10	57775955	57777603	(76019819)	C	THE1C-int	LTR/ERVL-MaLR	(0)	1580	1	453157
257	27.0	11.9	2.7	chr10	62488617	62488799	(71308623)	+	LTR78	LTR/ERV1	281	482	(822)	460152
2941	26.9	7.2	3.5	chr10	62488870	62490218	(71307204)	C	L2a	LINE/L2	(0)	3426	2027	460153
8461	16.1	3.2	6.7	chr10	70182558	70182745	(63614677)	+	L1MC3	LINE/L1	7620	7778	(7)	472887
426	27.4	14.8	0.2	chr10	70182982	70183160	(63614262)	+	MIR	SINE/MIR	26	252	(16)	472910
827	24.0	11.3	7.2	chr10	72330333	72330681	(61466741)	C	MER34C2	LTR/ERV1	(8)	579	245	477060
2544	5.4	0.0	0.3	chr10	72330682	72330978	(61466444)	+	AluY	SINE/Alu	1	296	(15)	477061
422	34.0	9.0	3.0	chr10	76577525	76577827	(57219595)	C	L3	LINE/CR1	(239)	3860	3538	484686
16	23.6	3.3	3.2	chr10	79068720	79068780	(54728642)	+	A-rich	Low_complexity	1	63	(0)	488998
17	6.8	6.5	0.0	chr10	79068813	79068843	(54728579)	+	(GCG)n	Simple_repeat	1	33	(0)	488999
1858	15.3	2.4	0.0	chr10	97250784	97251071	(36546351)	+	AluJb	SINE/Alu	1	295	(17)	517559
402	7.1	8.0	0.5	chr10	97251079	97251792	(36545630)	+	GA-rich	Low_complexity	1	771	(0)	517560
15	31.5	3.4	4.9	chr10	97713625	97713743	(36083679)	+	GA-rich	Low_complexity	1	123	(0)	518570
25	23.3	2.8	5.5	chr10	97713845	97713950	(36083472)	+	(CGC)n	Simple_repeat	1	109	(0)	518571
12	7.7	3.2	6.2	chr10	102450116	102450146	(31347276)	+	GA-rich	Low_complexity	1	32	(0)	526949
358	22.6	8.7	0.0	chr10	102837802	102837885	(30959537)	C	AluSc	SINE/Alu	(14)	295	204	527694
204	31.2	0.0	0.0	chr10	103859053	103859100	(29938322)	+	L2b	LINE/L2	3315	3362	(13)	529784
306	29.8	3.9	7.5	chr10	103859156	103859289	(29938133)	+	MIR3	SINE/MIR	8	136	(72)	529785
13	28.2	0.0	0.0	chr10	103859508	103859547	(29937875)	+	(CTC)n	Simple_repeat	1	40	(0)	529786
17	0.0	0.0	0.0	chr10	114295017	114295035	(19502387)	+	(A)n	Simple_repeat	1	19	(0)	545702
69	7.2	0.0	0.0	chr10	118181646	118181734	(15615688)	+	(TGGAA)n	Simple_repeat	1	89	(0)	551676
1842	19.4	7.3	5.1	chr10	120034196	120034867	(13762555)	C	LTR48	LTR/ERV1	(0)	644	1	555021
744	20.9	8.2	5.0	chr10	125928992	125929492	(7867930)	C	MER34C2	LTR/ERV1	(17)	770	157	564231
1077	18.7	7.3	3.5	chr10	127820667	127821064	(5976358)	+	MER34C2	LTR/ERV1	243	555	(0)	566671
1139	23.6	1.0	2.3	chr10	130012433	130012740	(3784682)	+	L1MB8	LINE/L1	5874	6177	(1)	568992
1186	24.3	8.7	0.0	chr10	132097443	132097755	(1699667)	+	L1MD1	LINE/L1	5890	6232	(10)	571332
76	7.3	2.5	1.6	chr10	132097885	132098005	(1699417)	+	(CTTCCC)n	Simple_repeat	1	124	(0)	571333
1860	17.3	3.9	0.0	chr10	132098024	132098323	(1699099)	C	AluJb	SINE/Alu	(0)	312	1	571334
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
8705	1.0	24.2	0.0	chr10	133785742	133787104	(10318)	+	TAR1	Satellite/telo	314	2111	(0)	572857
113	26.6	0.6	1.2	chr10	133787105	133787422	(10000)	+	G-rich	Low_complexity	1	320	(0)	572858
46	0.0	0.0	0.0	chr11	1583880	1583918	(133502704)	+	(GT)n	Simple_repeat	1	39	(0)	574771
278	25.0	12.9	5.0	chr11	2653010	2653358	(132433264)	C	LTR85b	LTR/Gypsy?	(260)	524	101	576019
752	26.7	11.3	11.3	chr11	2653382	2653963	(132432659)	C	MLT1K	LTR/ERVL-MaLR	(10)	585	4	576020
2390	8.9	0.0	0.3	chr11	3798325	3798626	(131287996)	C	AluSx1	SINE/Alu	(7)	305	5	577722
240	21.6	11.9	0.0	chr11	6316934	6317007	(128769615)	C	MIRc	SINE/MIR	(62)	206	123	581116
40	2.5	0.0	0.0	chr11	6390701	6390741	(128695881)	+	(CTGGCG)n	Simple_repeat	1	41	(0)	581256
18	6.3	0.0	7.7	chr11	6390959	6390997	(128695625)	+	(GCTGGG)n	Simple_repeat	1	39	(0)	581257
12	21.1	0.0	7.8	chr11	9664024	9664074	(125422548)	+	G-rich	Low_complexity	1	51	(0)	586301
2379	23.8	8.6	3.0	chr11	11871532	11871927	(123214695)	C	L1MD1	LINE/L1	(5847)	771	331	589879
1093	27.1	9.9	2.5	chr11	11871999	11872507	(123214115)	C	MLT1G1	LTR/ERVL-MaLR	(0)	555	1	589882
202	26.3	20.8	1.0	chr11	11872511	11872606	(123214016)	C	L2a	LINE/L2	(289)	3137	3018	589883
316	32.2	12.0	3.8	chr11	17896239	17896474	(117190148)	C	MIR	SINE/MIR	(0)	262	5	599511
187	30.3	2.9	4.3	chr11	17896476	17896544	(117190078)	+	L3	LINE/CR1	3691	3758	(341)	599510
259	1.2	0.0	7.1	chr11	17896545	17896936	(117189686)	+	(GAAGG)n	Simple_repeat	1	392	(0)	599512
201	30.1	2.4	1.2	chr11	17896937	17897020	(117189602)	+	L3	LINE/CR1	3858	3942	(157)	599510
2314	21.4	3.9	0.4	chr11	17897021	17897489	(117189133)	+	MLT1E2	LTR/ERVL-MaLR	142	627	(0)	599513
252	19.2	1.9	0.0	chr11	20214694	20214745	(114871877)	C	MLT2C1	LTR/ERVL	(3)	551	499	603538
22	25.1	0.0	0.0	chr11	20214756	20214812	(114871810)	+	(TATA)n	Simple_repeat	1	57	(0)	603539
2145	23.5	2.3	5.0	chr11	32630865	32631544	(102455078)	+	L1MEc	LINE/L1	2445	3105	(3214)	621972
230	7.1	0.0	0.0	chr11	32631545	32631572	(102455050)	+	AluJb	SINE/Alu	87	114	(188)	621978
71	6.1	7.4	0.0	chr11	32631573	32631693	(102454929)	+	(AGGAA)n	Simple_repeat	1	130	(0)	621979
725	15.7	9.4	2.9	chr11	32631703	32631840	(102454782)	+	AluJb	SINE/Alu	135	282	(30)	621978
19	22.6	0.0	0.0	chr11	32631850	32631896	(102454726)	+	(AGAC)n	Simple_repeat	1	47	(0)	621980
1446	23.7	2.6	9.9	chr11	32631928	32632218	(102454404)	C	L1M5	LINE/L1	(3211)	2935	2666	621981
2496	7.2	0.3	0.0	chr11	33015348	33015654	(102070968)	C	AluSx1	SINE/Alu	(4)	308	1	622658
19	24.2	1.5	2.9	chr11	33016057	33016123	(102070499)	+	(GGCGTGC)n	Simple_repeat	1	68	(0)	622659
12	19.4	4.7	2.2	chr11	43579413	43579455	(91507167)	+	G-rich	Low_complexity	1	45	(0)	638677
12	14.8	7.5	2.3	chr11	43579542	43579581	(91507041)	+	(GGTC)n	Simple_repeat	1	43	(0)	638678
2978	14.6	6.7	1.9	chr11	44065253	44065789	(91020833)	+	MER34B	LTR/ERV1	1	565	(0)	639503
246	31.5	3.7	0.8	chr11	45102832	45102962	(89983660)	C	L2c	LINE/L2	(227)	3160	3026	641506
194	14.3	0.0	0.0	chr11	45103038	45103072	(89983550)	C	MIR1_Amn	SINE/MIR	(168)	62	28	641507
20	15.5	5.9	0.0	chr11	45103352	45103402	(89983220)	+	GA-rich	Low_complexity	1	54	(0)	641508
13	4.8	0.0	4.2	chr11	59172094	59172117	(75914505)	+	(GGGA)n	Simple_repeat	1	24	(0)	656440
12	17.6	4.0	5.8	chr11	59172219	59172268	(75914354)	+	(GCCGCCG)n	Simple_repeat	1	52	(0)	656441
3513	14.9	6.3	4.4	chr11	60908628	60909359	(74177263)	C	LTR48	LTR/ERV1	(1)	786	40	659089
3104	13.4	2.1	1.3	chr11	60909360	60909706	(74176916)	+	LTR45	LTR/ERV1	1	353	(172)	659090
718	13.0	0.0	3.5	chr11	65476815	65476929	(69609693)	+	AluJr4	SINE/Alu	195	305	(7)	667618
16	12.6	4.1	5.9	chr11	65818245	65818293	(69268329)	+	G-rich	Low_complexity	1	51	(0)	668224
291	22.6	6.4	6.4	chr11	65818452	65818560	(69268062)	+	MIRc	SINE/MIR	98	206	(62)	668225
1779	17.8	2.7	0.7	chr11	72535562	72535854	(62550768)	+	AluJr	SINE/Alu	1	299	(13)	680143
274	24.4	4.3	1.3	chr11	75706094	75706177	(59380445)	+	MIRb	SINE/MIR	81	170	(92)	686603
18	19.6	1.7	5.1	chr11	75706476	75706533	(59380089)	+	(CCT)n	Simple_repeat	1	59	(0)	686604
223	17.6	0.2	1.5	chr11	77083107	77083160	(58003462)	C	MIRc	SINE/MIR	(93)	137	80	689231
313	27.3	9.2	0.8	chr11	77083422	77083550	(58003072)	+	MIR3	SINE/MIR	4	144	(124)	689232
469	24.0	2.3	0.0	chr11	77728264	77728388	(57358234)	+	L1MB7	LINE/L1	5761	5888	(286)	690480
878	7.5	0.9	0.0	chr11	77728394	77728500	(57358122)	+	AluSp	SINE/Alu	1	108	(205)	690481
61	12.2	3.9	5.6	chr11	77728501	77728654	(57357968)	+	GA-rich	Low_complexity	1	160	(0)	690482
932	22.8	3.3	0.4	chr11	77728656	77728893	(57357729)	+	L1MB7	LINE/L1	5878	6122	(62)	690480
22	18.7	1.5	4.5	chr11	86069367	86069432	(49017190)	+	G-rich	Low_complexity	1	67	(0)	704860
2715	22.8	8.9	4.4	chr11	93768511	93768928	(41317694)	C	LTR48	LTR/ERV1	(2)	785	342	716135
2544	9.4	0.0	0.0	chr11	93768929	93769225	(41317397)	+	AluSx1	SINE/Alu	4	300	(12)	716136
26226	2.5	0.4	0.0	chr11	94232525	94238528	(40848094)	C	L1PA2	LINE/L1	(3)	6152	124	716864
15	20.5	0.0	2.4	chr11	94544397	94544437	(40542185)	+	(CAGCGG)n	Simple_repeat	1	41	(0)	717312
15	25.8	0.0	3.7	chr11	94544528	94544581	(40542041)	+	(CGG)n	Simple_repeat	1	54	(0)	717313
2190	20.0	7.2	4.0	chr11	102554937	102555606	(32531016)	+	LTR48	LTR/ERV1	3	644	(0)	728140
2790	20.0	4.4	5.1	chr11	117020263	117021187	(18065435)	+	MER21B	LTR/ERVL	44	936	(2)	750351
18	25.1	2.6	3.9	chr11	117316039	117316114	(17770508)	+	(GGCGG)n	Simple_repeat	1	78	(0)	750938
291	33.7	2.8	10.9	chr11	117316474	117316752	(17769870)	C	L2b	LINE/L2	(26)	3349	3062	750939
2072	20.5	9.0	1.4	chr11	122823431	122823925	(12262697)	C	LTR48	LTR/ERV1	(11)	776	241	760288
1594	13.6	0.0	0.0	chr11	122823926	122824153	(12262469)	C	AluSx1	SINE/Alu	(7)	305	78	760289
1250	21.1	15.1	12.4	chr11	123775136	123775708	(11310914)	C	LTR49	LTR/ERV1	(0)	595	5	762143
2972	19.3	7.6	8.1	chr11	125509074	125509667	(9576955)	C	LTR48	LTR/ERV1	(0)	787	189	764643
2247	11.3	0.7	0.0	chr11	125509668	125509969	(9576653)	C	AluSg7	SINE/Alu	(5)	304	1	764644
2109	13.5	0.3	0.3	chr11	125525875	125526178	(9560444)	C	AluSz6	SINE/Alu	(8)	304	1	764684
1029	16.7	14.0	10.9	chr11	125526179	125526279	(9560343)	+	LTR48	LTR/ERV1	203	296	(491)	764682
1971	13.1	10.5	0.5	chr11	125526274	125526641	(9559981)	+	LTR48	LTR/ERV1	201	609	(178)	764685
901	8.9	8.8	0.7	chr11	125526663	125526798	(9559824)	C	L1PA10	LINE/L1	(0)	6168	6021	764686
849	27.2	3.5	2.1	chr11	130263993	130264246	(4822376)	+	MIR	SINE/MIR	6	256	(6)	771590
528	11.9	0.6	7.2	chr11	133706761	133707911	(1378711)	+	G-rich	Low_complexity	1	1158	(0)	776277
17	16.9	5.1	4.8	chr11	133928066	133928124	(1158498)	+	(AGC)n	Simple_repeat	1	62	(0)	776539
548	2.3	1.2	1.4	chr12	10001	10585	(133264724)	+	(CTAACC)n	Simple_repeat	1	592	(0)	778084
501	28.4	14.5	4.9	chr12	685764	686018	(132589291)	C	MLT1O	LTR/ERVL-MaLR	(1)	541	255	779246
2606	5.9	0.3	0.0	chr12	686019	686325	(132588984)	C	AluY	SINE/Alu	(3)	308	1	779247
13	21.3	2.6	0.0	chr12	1153817	1153854	(132121455)	+	(GCCCCT)n	Simple_repeat	1	39	(0)	780202
1719	13.2	1.8	1.1	chr12	1153937	1154212	(132121097)	C	L1PB3	LINE/L1	(94)	6060	5783	780203
52	0.0	0.0	0.0	chr12	1154214	1154260	(132121049)	+	(TATGTA)n	Simple_repeat	1	47	(0)	780204
17	29.4	0.0	1.7	chr12	1865623	1865682	(131409627)	+	(GCA)n	Simple_repeat	1	60	(0)	781374
2565	26.0	6.9	2.8	chr12	1865809	1866616	(131408693)	C	L1ME2	LINE/L1	(4408)	1834	1549	781371
280	33.6	6.1	0.0	chr12	2255710	2255816	(131019493)	C	L2b	LINE/L2	(6)	3369	3256	781930
2479	9.0	0.0	0.0	chr12	6309681	6309990	(126965319)	C	AluSx4	SINE/Alu	(0)	310	1	788461
199	4.1	0.0	6.6	chr12	8050814	8051133	(125224176)	+	(TCCCT)n	Simple_repeat	1	320	(0)	791691
2082	12.9	0.3	0.0	chr12	8051135	8051428	(125223881)	C	AluSz6	SINE/Alu	(16)	296	2	791692
2238	20.9	11.5	3.2	chr12	11154275	11154958	(122120351)	C	LTR48	LTR/ERV1	(3)	784	1	796125
241	31.9	0.8	0.8	chr12	17097512	17097631	(116177678)	C	MLT1J-int	LTR/ERVL-MaLR	(653)	734	615	805100
790	27.6	13.8	4.7	chr12	18828564	18828969	(114446340)	+	L2a	LINE/L2	2978	3426	(0)	807126
527	29.4	5.1	0.5	chr12	18829095	18829441	(114445868)	C	L1MEd	LINE/L1	(5941)	1162	743	807127
751	34.6	8.2	3.8	chr12	22216240	22216764	(111058545)	+	L2c	LINE/L2	2820	3387	(0)	811785
2133	15.3	6.7	12.8	chr12	24929371	24929962	(108345347)	+	MER34C2	LTR/ERV1	3	555	(0)	815663
1900	14.6	0.7	5.1	chr12	26515830	26516144	(106759165)	+	AluJb	SINE/Alu	3	303	(9)	818083
28	4.6	2.0	4.0	chr12	26516160	26516208	(106759101)	+	(AGGGG)n	Simple_repeat	1	50	(0)	818084
161	2.0	0.0	0.0	chr12	26516214	26516366	(106758943)	+	(AAGGA)n	Simple_repeat	1	153	(0)	818085
837	32.8	2.0	0.4	chr12	51183200	51183441	(82091868)	+	MIR	SINE/MIR	17	262	(0)	850794
42	24.5	2.4	5.2	chr12	51951676	51951738	(81323571)	+	(CGG)n	Simple_repeat	75	174	(0)	852208
268	25.7	10.2	5.7	chr12	52163685	52163826	(81111483)	C	L2a	LINE/L2	(173)	3214	3063	852534
40	0.0	0.0	0.0	chr12	54079823	54079856	(79195453)	+	(TG)n	Simple_repeat	1	34	(0)	855832
15	11.5	0.0	3.2	chr12	56221859	56221889	(77053420)	+	(GGGAA)n	Simple_repeat	1	31	(0)	859117
31	3.1	0.0	0.0	chr12	64404467	64404499	(68870810)	+	(GCG)n	Simple_repeat	1	33	(0)	871076
23	18.1	0.0	0.0	chr12	64404541	64404586	(68870723)	+	(CCTG)n	Simple_repeat	1	46	(0)	871077
13	21.4	4.7	0.0	chr12	64404711	64404753	(68870556)	+	(CCGCT)n	Simple_repeat	1	45	(0)	871078
1212	22.1	7.4	5.7	chr12	72716019	72716576	(60558733)	+	MER34C2	LTR/ERV1	1	592	(3)	884136
2585	14.5	5.6	7.4	chr12	75918372	75918937	(57356372)	+	MER34C2	LTR/ERV1	1	555	(0)	888307
10261	12.0	2.2	0.6	chr12	76573122	76574717	(56700592)	C	THE1B-int	LTR/ERVL-MaLR	(6)	1625	3	889457
16	16.5	0.0	0.0	chr12	78863812	78863838	(54411471)	+	A-rich	Low_complexity	1	27	(0)	892738
1019	23.7	10.5	10.8	chr12	79090568	79091158	(54184151)	C	LTR49	LTR/ERV1	(2)	593	5	893047
17	12.3	0.0	5.1	chr12	79689686	79689724	(53585585)	+	(GCCCG)n	Simple_repeat	1	39	(0)	893881
893	29.4	4.2	11.2	chr12	90320873	90321334	(42953975)	C	MLT1F1	LTR/ERVL-MaLR	(133)	436	9	908368
1414	21.5	9.4	12.3	chr12	90321364	90321931	(42953378)	C	LTR49	LTR/ERV1	(45)	550	1	908370
1782	14.1	0.4	2.2	chr12	97988004	97988272	(35287037)	+	AluSz	SINE/Alu	2	265	(47)	921485
906	10.3	0.1	0.8	chr12	97988289	97989708	(35285601)	+	(GGAAGGGAAG)n	Simple_repeat	1	1422	(0)	921486
1364	19.4	10.1	9.9	chr12	107106586	107107187	(26168122)	C	LTR49	LTR/ERV1	(45)	550	1	937423
36	2.7	0.0	0.0	chr12	113080590	113080627	(20194682)	+	(GAATG)n	Simple_repeat	1	38	(0)	950746
12	8.7	0.0	3.6	chr12	113080628	113080649	(20194660)	+	(GAATA)n	Simple_repeat	1	21	(0)	950747
1954	15.0	0.7	0.3	chr12	113080696	113080989	(20194320)	+	AluJo	SINE/Alu	3	297	(15)	950748
1568	10.2	5.4	0.0	chr12	116646772	116646997	(16628312)	C	MER41A	LTR/ERV1	(0)	554	316	958604
222	11.8	0.6	7.1	chr12	116646998	116647484	(16627825)	+	(CCTTC)n	Simple_repeat	1	490	(0)	958605
72	12.7	1.9	4.5	chr12	119850387	119850540	(13424769)	+	G-rich	Low_complexity	1	157	(0)	965612
308	30.9	2.3	0.0	chr12	119850555	119850680	(13424629)	C	MER113A	DNA/hAT-Charlie	(0)	314	186	965613
1899	16.7	3.5	0.0	chr12	120075386	120075684	(13199625)	C	AluJb	SINE/Alu	(2)	310	1	966181
835	11.3	6.8	0.8	chr12	122266701	122266824	(11008485)	+	FLAM_C	SINE/Alu	1	132	(11)	971438
22	5.7	0.0	7.0	chr12	124920567	124920609	(8354700)	+	(CTCCC)n	Simple_repeat	1	43	(0)	977149
752	16.4	0.0	0.8	chr12	124920615	124920736	(8354573)	C	FLAM_C	SINE/Alu	(12)	131	11	977150
1687	18.0	11.3	6.3	chr12	124920772	124921198	(8354111)	+	LTR47A	LTR/ERVL	2	452	(0)	977151
615	5.6	0.0	0.0	chr12	124921755	124921826	(8353483)	C	tRNA-Ala-GCG	tRNA	(3)	72	1	977152
2521	17.5	7.0	5.0	chr12	124921921	124922521	(8352788)	C	L1MA5	LINE/L1	(0)	6300	5687	977153
200	34.6	4.6	3.7	chr12	132987275	132987382	(287927)	C	L2c	LINE/L2	(45)	3342	3234	990299
1039	24.7	10.7	11.6	chr13	22369733	22370328	(91994000)	+	LTR49	LTR/ERV1	5	594	(1)	997395
349	32.4	0.7	4.5	chr13	25904231	25904338	(88459990)	+	MER5B	DNA/hAT-Charlie	71	178	(0)	1002455
2721	3.7	0.0	0.0	chr13	37000064	37000363	(77363965)	+	AluY	SINE/Alu	1	300	(11)	1019396
14	10.0	6.2	0.0	chr13	37000762	37000793	(77363535)	+	(GCGCAG)n	Simple_repeat	1	34	(0)	1019397
251	24.3	14.2	2.8	chr13	44743769	44743874	(69620454)	+	L2a	LINE/L2	3307	3426	(0)	1030879
355	21.6	11.8	0.0	chr13	44744179	44744275	(69620053)	+	MIR	SINE/MIR	14	123	(139)	1030880
3166	16.2	12.6	3.8	chr13	45770748	45771451	(68592877)	C	LTR48	LTR/ERV1	(10)	777	3	1032805
3032	20.7	6.9	1.1	chr13	50532498	50533238	(63831090)	+	LTR48	LTR/ERV1	1	787	(0)	1040262
6074	15.9	5.2	2.1	chr13	62135763	62137460	(52226868)	+	MER4-int	LTR/ERV1	3837	5506	(757)	1055618
2730	21.3	7.0	1.0	chr13	62137461	62138400	(52225928)	+	LTR28C	LTR/ERV1	1	1067	(62)	1055624
11102	11.3	0.2	0.1	chr13	62973144	62974721	(51389607)	C	THE1A-int	LTR/ERVL-MaLR	(0)	1580	1	1056677
9346	16.1	3.5	0.8	chr13	63009431	63011011	(51353317)	C	MSTA-int	LTR/ERVL-MaLR	(6)	1625	1	1056706
9655	13.4	6.6	0.4	chr13	63146284	63147809	(51216519)	C	THE1D-int	LTR/ERVL-MaLR	(0)	1631	4	1056880
4033	18.8	13.4	4.5	chr13	65812405	65813329	(48550999)	+	LTR28	LTR/ERV1	1	1020	(0)	1060247
3799	18.4	2.8	0.6	chr13	68273019	68273713	(46090615)	C	MER50	LTR/ERV1	(23)	711	1	1063328
3671	18.1	3.6	7.9	chr13	68273715	68274787	(46089541)	+	LTR49-int	LTR/ERV1	2562	4335	(1996)	1063324
16520	6.0	2.4	0.8	chr13	69222418	69225336	(45138992)	+	HERV17-int	LTR/ERV1	1	3055	(5571)	1064531
983	18.5	5.3	4.2	chr13	70074979	70075238	(44289090)	C	LTR48	LTR/ERV1	(0)	787	525	1065637
296	10.4	11.1	0.0	chr13	70075282	70075329	(44288999)	C	LTR48	LTR/ERV1	(402)	385	332	1065637
389	25.4	0.0	2.0	chr13	70075332	70075466	(44288862)	+	L1MC2	LINE/L1	4145	4265	(1875)	1065638
633	31.6	4.9	5.3	chr13	70203162	70203757	(44160571)	+	L1ME3D	LINE/L1	5468	6080	(162)	1065828
1042	25.5	12.0	0.9	chr13	70203758	70204074	(44160254)	+	LTR18A	LTR/ERVL	1	357	(0)	1065829
293	28.8	2.1	8.9	chr13	70204075	70204191	(44160137)	+	L1ME3D	LINE/L1	6073	6123	(0)	1065828
276	37.0	4.8	0.0	chr13	72781432	72781550	(41582778)	+	MIRc	SINE/MIR	13	137	(131)	1069318
615	8.7	3.7	11.9	chr13	73440041	73440158	(40924170)	C	MSTA	LTR/ERVL-MaLR	(0)	428	321	1070560
1639	18.3	5.6	1.8	chr13	73440159	73440486	(40923842)	+	MER61A	LTR/ERV1	1	341	(0)	1070561
1907	20.2	3.7	2.3	chr13	73440487	73440966	(40923362)	+	MER61-int	LTR/ERV1	1	487	(4730)	1070561
18601	10.8	2.7	2.1	chr13	73441018	73442558	(40921770)	+	MER61-int	LTR/ERV1	1655	3013	(2204)	1070561
553	24.1	5.1	0.0	chr13	74100759	74100870	(40263458)	+	MER39	LTR/ERV1	15	132	(575)	1071507
1956	20.4	11.4	2.4	chr13	74100859	74101435	(40262893)	+	LTR48	LTR/ERV1	142	757	(30)	1071508
13	10.8	3.1	3.0	chr13	74575874	74575905	(39788423)	+	(CCGGC)n	Simple_repeat	1	33	(0)	1072129
365	30.1	10.2	6.7	chr13	75927208	75927716	(38436612)	+	L1MC4	LINE/L1	58	586	(5629)	1074069
10699	18.9	3.8	1.4	chr13	79813504	79815141	(34549187)	C	L1MB8	LINE/L1	(355)	5823	4149	1079455
85	0.0	0.7	9.8	chr13	79815142	79815283	(34549045)	+	(CCTTT)n	Simple_repeat	1	143	(0)	1079457
10699	18.7	4.2	0.9	chr13	79815284	79816625	(34547703)	C	L1MB8	LINE/L1	(1998)	4148	2752	1079455
21	22.8	6.5	0.0	chr13	80340984	80341060	(34023268)	+	G-rich	Low_complexity	1	82	(0)	1080203
36	2.7	0.0	0.0	chr13	80341176	80341213	(34023115)	+	(GGA)n	Simple_repeat	1	38	(0)	1080204
1519	20.4	7.3	6.6	chr13	80433047	80433720	(33930608)	+	LTR48	LTR/ERV1	1	770	(17)	1080340
1782	19.2	0.0	0.3	chr13	84976688	84976974	(29387354)	+	AluJb	SINE/Alu	1	286	(26)	1085937
577	35.9	3.8	4.0	chr13	88404606	88405026	(25959302)	+	LTR16C	LTR/ERVL	70	489	(0)	1090268
2700	22.6	7.5	1.8	chr13	88486169	88486907	(25877421)	C	LTR48	LTR/ERV1	(0)	787	3	1090386
2446	15.1	7.4	3.2	chr13	89450966	89451470	(24912858)	+	LTR64	LTR/ERV1	1	528	(0)	1091619
9622	12.6	3.7	4.0	chr13	90546834	90548398	(23815930)	C	THE1B-int	LTR/ERVL-MaLR	(7)	1573	13	1093056
1882	10.5	7.8	4.4	chr13	91057371	91057665	(23306663)	+	AluSz6	SINE/Alu	1	306	(6)	1093710
109	5.6	0.6	2.5	chr13	91057667	91057824	(23306504)	+	(GGAAA)n	Simple_repeat	1	159	(0)	1093711
2002	21.4	2.5	2.0	chr13	91058014	91058453	(23305875)	C	MER57A-int	LTR/ERV1	(4079)	2108	1667	1093712
44	13.1	1.2	1.2	chr13	92869517	92869596	(21494732)	+	GA-rich	Low_complexity	1	81	(0)	1096116
1517	26.7	10.4	5.4	chr13	95223796	95224454	(19139874)	+	L1MEf	LINE/L1	897	1602	(4640)	1099586
2377	10.5	0.0	0.0	chr13	95224455	95224760	(19139568)	+	AluSz6	SINE/Alu	1	306	(6)	1099588
11149	12.3	1.4	0.2	chr13	95458737	95460345	(18903983)	C	THE1D-int	LTR/ERVL-MaLR	(0)	1631	4	1100148
263	33.2	15.9	1.8	chr13	96240489	96240795	(18123533)	C	L2b	LINE/L2	(215)	3160	2806	1101321
2431	19.0	5.7	1.6	chr13	96241078	96241773	(18122555)	+	Charlie2b	DNA/hAT-Charlie	1775	2500	(282)	1101322
12	15.3	5.3	2.5	chr13	100588762	100588799	(13775529)	+	G-rich	Low_complexity	1	40	(0)	1108183
17	17.5	0.0	2.4	chr13	110713604	110713644	(3650684)	+	G-rich	Low_complexity	1	41	(0)	1121637
1598	27.9	4.5	4.1	chr13	111429128	111429228	(2935100)	C	L1MC4	LINE/L1	(983)	7059	6964	1122514
13	16.2	0.0	5.3	chr13	111429491	111429528	(2934800)	+	(CTGCCC)n	Simple_repeat	1	38	(0)	1122518
228	28.7	17.4	3.7	chr13	111429572	111429734	(2934594)	+	L2c	LINE/L2	2410	2599	(820)	1122519
9431	1.8	22.6	0.4	chr13	114352578	114353941	(10387)	+	TAR1	Satellite/telo	314	2069	(42)	1125575
286	4.0	1.6	3.3	chr13	114353942	114354328	(10000)	+	(AGGGTT)n	Simple_repeat	1	393	(0)	1125576
2159	10.0	2.4	4.9	chr14	20682388	20682735	(86360983)	+	MER1B	DNA/hAT-Charlie	1	339	(0)	1128458
2990	16.7	11.2	2.9	chr14	44309187	44309906	(62733812)	+	LTR48	LTR/ERV1	1	787	(0)	1161605
10756	12.4	0.5	0.7	chr14	45443139	45444767	(61598951)	+	THE1D-int	LTR/ERVL-MaLR	1	1626	(5)	1163185
16	15.0	1.9	7.5	chr14	49634052	49634103	(57409615)	+	(CGG)n	Simple_repeat	1	53	(0)	1168309
24	26.0	0.0	5.5	chr14	50532503	50532593	(56511125)	+	(GCC)n	Simple_repeat	1	91	(0)	1170125
2319	11.1	0.0	0.0	chr14	55377065	55377362	(51666356)	+	AluSq2	SINE/Alu	1	298	(15)	1177572
1610	23.6	9.3	1.7	chr14	55928695	55929219	(51114499)	C	L1ME3E	LINE/L1	(11)	6231	5663	1178538
650	23.5	9.2	1.0	chr14	55929220	55929434	(51114284)	C	MLT1J	LTR/ERVL-MaLR	(236)	276	1	1178539
1718	16.6	9.9	4.4	chr14	66218327	66218964	(40824754)	C	LTR48	LTR/ERV1	(30)	757	1	1194291
120	26.7	6.7	0.8	chr14	70822242	70822735	(36220983)	+	(CT)n	Simple_repeat	1	527	(0)	1201805
1448	17.3	8.6	1.2	chr14	71606967	71607300	(35436418)	C	LTR48	LTR/ERV1	(103)	684	324	1203087
253	19.0	7.7	1.2	chr14	71607316	71607400	(35436318)	+	Charlie4a	DNA/hAT-Charlie	348	438	(70)	1203088
2928	18.6	10.3	2.5	chr14	72250847	72251570	(34792148)	C	LTR48	LTR/ERV1	(0)	787	1	1204025
1377	22.3	9.2	3.5	chr14	73323881	73324507	(33719211)	+	LTR48	LTR/ERV1	1	640	(4)	1205963
339	25.3	5.2	0.0	chr14	77621449	77621539	(29422179)	C	MLT1K	LTR/ERVL-MaLR	(499)	96	1	1214584
672	18.8	3.0	0.0	chr14	77621572	77621707	(29422011)	+	FLAM_C	SINE/Alu	20	133	(0)	1214588
2096	15.8	1.9	0.0	chr14	77621841	77622144	(29421574)	C	AluSz6	SINE/Alu	(2)	310	1	1214589
226	29.1	6.5	0.0	chr14	89551668	89551753	(17491965)	+	L2b	LINE/L2	3279	3370	(5)	1232292
11724	8.6	1.8	0.1	chr14	90937902	90939453	(16104265)	C	THE1B-int	LTR/ERVL-MaLR	(0)	1580	1	1234720
177	22.9	3.0	4.2	chr14	95137018	95137593	(11906125)	+	A-rich	Low_complexity	1	593	(0)	1242484
2285	10.4	0.3	0.3	chr14	97157810	97158116	(9885602)	+	AluSc8	SINE/Alu	1	307	(4)	1246206
24	16.0	1.2	9.4	chr14	97158253	97158336	(9885382)	+	(TAA)n	Simple_repeat	1	85	(0)	1246207
31	0.0	0.0	0.0	chr14	99420948	99420976	(7622742)	+	(G)n	Simple_repeat	1	29	(0)	1250017
13	26.6	2.9	4.3	chr14	104753024	104753091	(2290627)	+	(CCGCG)n	Simple_repeat	1	70	(0)	1258777
937	31.5	10.0	1.6	chr14	104996821	104997726	(2045992)	+	L1MEf	LINE/L1	1148	2304	(4733)	1259065
812	21.6	2.9	5.7	chr14	105188230	105188376	(1855342)	C	HAL1	LINE/L1	(782)	1725	1587	1259370
2041	13.1	1.7	0.7	chr14	105188377	105188667	(1855051)	+	AluSx3	SINE/Alu	1	294	(17)	1259371
29	16.8	4.8	5.5	chr14	105248546	105248649	(1795069)	+	G-rich	Low_complexity	1	109	(0)	1259422
14	7.5	3.3	3.2	chr14	105248799	105248828	(1794890)	+	(CGGCG)n	Simple_repeat	1	31	(0)	1259423
15	14.7	1.5	10.6	chr14	105559500	105559564	(1484154)	+	(AGGCCCC)n	Simple_repeat	1	66	(0)	1259845
14	26.3	0.0	3.4	chr14	105559697	105559747	(1483971)	+	(CCGAGC)n	Simple_repeat	1	49	(0)	1259846
70	2.9	0.0	0.0	chr14	105559748	105559818	(1483900)	+	(GCCCCT)n	Simple_repeat	1	71	(0)	1259847
12	29.0	0.0	2.1	chr14	105680096	105680143	(1363575)	+	(CCGAGC)n	Simple_repeat	1	48	(0)	1259940
77	4.8	0.0	0.0	chr14	105680150	105680235	(1363483)	+	(CCTGCC)n	Simple_repeat	1	86	(0)	1259941
2251	6.7	4.8	1.1	chr15	20340242	20344102	(81647087)	+	(AGCCAGCCA)n	Simple_repeat	1	4048	(0)	1263201
2305	9.8	0.0	4.6	chr15	34027246	34027550	(67963639)	+	AluSx1	SINE/Alu	14	304	(8)	1282141
3133	22.8	5.4	4.6	chr15	34027551	34028157	(67963032)	+	L1M4	LINE/L1	627	1221	(6658)	1282140
9110	15.5	3.6	4.2	chr15	36275918	36279725	(65711464)	C	L1PA15-16	LINE/L1	(3168)	3681	641	1285454
207	34.1	2.4	1.2	chr15	40545656	40545738	(61445451)	+	MIRb	SINE/MIR	5	88	(180)	1291401
14	13.1	0.0	0.0	chr15	41231305	41231330	(60759859)	+	(CCCT)n	Simple_repeat	1	26	(0)	1292845
14	23.4	3.4	3.3	chr15	43133895	43133953	(58857236)	+	(GCCCGC)n	Simple_repeat	1	61	(0)	1296448
18697	12.9	1.7	4.3	chr15	56518685	56523778	(45467411)	+	L1PA15-16	LINE/L1	1222	6175	(694)	1317227
746	23.9	7.6	12.3	chr15	59596564	59596897	(42394292)	C	LTR48	LTR/ERV1	(0)	787	239	1322415
2357	10.2	0.0	0.0	chr15	59597005	59597328	(42393861)	C	L1PB1	LINE/L1	(0)	6151	5828	1322416
20	19.2	0.0	2.0	chr15	60398048	60398096	(41593093)	+	(CCCGC)n	Simple_repeat	1	49	(0)	1323705
26	0.0	0.0	0.0	chr15	60398363	60398387	(41592802)	+	(T)n	Simple_repeat	1	25	(0)	1323706
18	8.5	0.0	0.0	chr15	66707337	66707361	(35283828)	+	(AG)n	Simple_repeat	1	25	(0)	1335304
3833	17.2	0.9	1.1	chr15	73920422	73920863	(28070326)	C	MER41B	LTR/ERV1	(0)	634	192	1347944
26	23.6	3.4	5.7	chr15	79059065	79059144	(22932045)	+	(CCTC)n	Simple_repeat	1	79	(0)	1357162
203	1.6	3.9	3.8	chr15	79059145	79059425	(22931764)	+	(TTCCC)n	Simple_repeat	1	292	(0)	1357163
26	23.6	3.4	5.7	chr15	79059426	79059463	(22931726)	+	(CCTC)n	Simple_repeat	4	40	(0)	1357164
385	26.9	0.0	1.1	chr15	79059479	79059572	(22931617)	C	MIR3	SINE/MIR	(3)	205	113	1357165
247	18.2	0.0	0.0	chr15	79710459	79710502	(22280687)	C	MER1B	DNA/hAT-Charlie	(5)	334	291	1358254
2420	7.0	0.0	0.3	chr15	82109300	82109597	(19881592)	C	AluY	SINE/Alu	(14)	297	1	1362377
542	28.1	8.7	9.9	chr15	82110023	82110423	(19880766)	+	L2b	LINE/L2	2945	3426	(0)	1362378
456	31.5	5.6	4.5	chr15	90902168	90902294	(11088895)	+	L1ME4c	LINE/L1	410	530	(300)	1377331
1985	13.4	1.0	1.6	chr15	98536688	98536993	(3454196)	+	AluJb	SINE/Alu	1	304	(8)	1388791
101	2.4	0.0	3.6	chr15	98536994	98537131	(3454058)	+	(GGAAG)n	Simple_repeat	1	138	(0)	1388792
1084	22.4	7.6	7.6	chr15	100386622	100386964	(1604225)	C	L1MD2	LINE/L1	(0)	6359	6017	1391390
2441	25.4	5.8	1.1	chr15	100386971	100387590	(1603599)	+	MER21C	LTR/ERVL	252	902	(36)	1391391
5212	12.1	22.1	0.7	chr15	101979520	101980763	(10426)	+	TAR1	Satellite/telo	483	2068	(43)	1393518
328	3.1	1.9	3.2	chr15	101980765	101981189	(10000)	+	(GGTTAG)n	Simple_repeat	1	433	(0)	1393519
40	5.5	3.5	0.0	chr16	10001	10057	(90328288)	+	(TAACCC)n	Simple_repeat	1	59	(0)	1394055
3841	13.7	2.4	0.7	chr16	10059	11142	(90327203)	C	TAR1	Satellite/telo	(43)	1103	1	1394056
4627	19.1	6.3	3.1	chr16	1575933	1576003	(88762342)	+	Tigger2b_Pri	DNA/TcMar-Tigger	10	79	(989)	1396106
652	0.0	0.0	0.0	chr16	3158922	3158993	(87179352)	+	tRNA-Pro-CCA	tRNA	1	72	(3)	1398615
3755	16.3	9.0	1.9	chr16	5231164	5231893	(85106452)	+	LTR48	LTR/ERV1	1	787	(0)	1402862
64	12.6	0.8	3.2	chr16	5500073	5500194	(84838151)	+	(CCTC)n	Simple_repeat	1	123	(0)	1403414
35	11.0	0.0	0.0	chr16	5500196	5500255	(84838090)	+	(CATTC)n	Simple_repeat	1	60	(0)	1403415
1598	17.6	0.8	0.4	chr16	5500260	5500521	(84837824)	C	AluJr	SINE/Alu	(49)	263	1	1403416
2233	8.5	0.7	0.0	chr16	11580262	11580554	(78757791)	C	AluSx1	SINE/Alu	(16)	296	2	1416021
1901	18.6	3.4	15.2	chr16	11580555	11580766	(78757579)	+	MER34C2	LTR/ERV1	199	352	(203)	1416019
2034	12.4	0.3	0.0	chr16	11580767	11581064	(78757281)	C	AluJb	SINE/Alu	(13)	299	1	1416022
3206	15.8	14.2	1.6	chr16	12679716	12680401	(77657944)	+	LTR48	LTR/ERV1	1	787	(0)	1418390
2230	13.7	1.3	0.0	chr16	19220292	19220598	(71117747)	C	AluSx	SINE/Alu	(1)	311	1	1433014
2789	12.3	3.9	0.2	chr16	21183675	21184115	(69154230)	+	L1PA15	LINE/L1	5706	6163	(2)	1437365
279	16.7	0.0	0.0	chr16	21184117	21184164	(69154181)	C	LTR48	LTR/ERV1	(269)	375	328	1437364
921	14.9	12.1	1.1	chr16	21184158	21184340	(69154005)	C	LTR48	LTR/ERV1	(324)	463	258	1437366
2662	13.1	1.3	0.8	chr16	21184331	21184722	(69153623)	+	LTR47B2	LTR/ERVL	22	415	(19)	1437367
15	23.1	1.9	3.6	chr16	21599621	21599674	(68738671)	+	(GGC)n	Simple_repeat	1	55	(0)	1438246
2460	17.3	5.5	0.5	chr16	23981043	23981488	(66356857)	C	MLT1D	LTR/ERVL-MaLR	(7)	498	29	1443601
30	32.2	1.8	1.7	chr16	23981563	23981675	(66356670)	+	(TTCTT)n	Simple_repeat	1	115	(0)	1443602
1852	16.2	0.3	2.9	chr16	23982413	23982727	(66355618)	C	AluJr	SINE/Alu	(4)	308	2	1443603
218	28.0	12.7	0.0	chr16	25759958	25760081	(64578264)	C	MIRc	SINE/MIR	(85)	183	24	1447651
56	1.9	0.0	0.0	chr16	25760102	25760156	(64578189)	+	(CCCTAA)n	Simple_repeat	1	55	(0)	1447654
1878	15.6	1.1	6.7	chr16	25760191	25760423	(64577922)	C	MLT1B	LTR/ERVL-MaLR	(40)	350	123	1447655
411	26.5	17.9	0.0	chr16	30805269	30805419	(59532926)	C	MIR	SINE/MIR	(36)	226	43	1458894
17	22.8	6.2	2.4	chr16	30805612	30805691	(59532654)	+	(TCCGGC)n	Simple_repeat	1	85	(0)	1458895
2357	5.0	5.4	2.5	chr16	33335927	33340033	(56998312)	+	(TGGCTTGGC)n	Simple_repeat	1	4327	(0)	1462585
888	6.7	4.2	0.7	chr16	33340034	33340155	(56998190)	C	LTR13A	LTR/ERVK	(840)	126	1	1462584
728	26.8	7.3	1.1	chr16	33544784	33546127	(56792218)	+	G-rich	Low_complexity	1	1424	(0)	1462780
29	6.1	5.9	0.0	chr16	33546128	33546178	(56792167)	+	(GGGCCA)n	Simple_repeat	1	54	(0)	1462781
728	26.8	7.3	1.1	chr16	33546179	33548307	(56790038)	+	G-rich	Low_complexity	1425	3685	(0)	1462782
29	6.1	5.9	0.0	chr16	34001238	34001288	(56337057)	+	(GGGCCA)n	Simple_repeat	1	54	(0)	1463485
404	19.2	1.4	0.0	chr16	34062434	34062506	(56275839)	+	AluSz6	SINE/Alu	225	298	(14)	1463557
316	25.0	0.0	0.0	chr16	34062726	34062789	(56275556)	+	AluYa8	SINE/Alu	223	286	(24)	1463558
390	15.6	3.0	0.0	chr16	34062893	34062956	(56275389)	+	AluYj4	SINE/Alu	224	289	(22)	1463559
377	20.6	0.0	0.0	chr16	34063794	34063861	(56274484)	+	AluYj4	SINE/Alu	224	291	(20)	1463563
318	21.8	0.0	0.0	chr16	34066270	34066324	(56272021)	+	AluYj4	SINE/Alu	224	278	(33)	1463572
330	24.4	1.2	2.4	chr16	34071698	34071779	(56266566)	+	AluJb	SINE/Alu	208	288	(24)	1463578
338	14.9	0.0	0.0	chr16	34085515	34085561	(56252784)	C	AluYj4	SINE/Alu	(39)	272	226	1463590
49	10.2	1.2	0.0	chr16	34085562	34085645	(56252700)	+	(CCATT)n	Simple_repeat	1	85	(0)	1463591
312	18.2	3.5	0.0	chr16	34097204	34097258	(56241087)	C	AluYh7	SINE/Alu	(23)	288	232	1463603
376	15.6	3.0	0.0	chr16	34097527	34097590	(56240755)	C	AluJo	SINE/Alu	(22)	290	225	1463604
12	11.6	3.3	3.2	chr16	53131472	53131501	(37206844)	+	(GCCCC)n	Simple_repeat	1	31	(0)	1477323
10320	11.8	3.5	0.7	chr16	53185074	53186608	(37151737)	+	THE1C-int	LTR/ERVL-MaLR	1	1580	(0)	1477431
2206	13.8	1.1	2.1	chr16	53186609	53186987	(37151358)	+	THE1C	LTR/ERVL-MaLR	1	375	(0)	1477431
182	32.9	2.8	0.0	chr16	57798837	57798906	(32539439)	C	L2c	LINE/L2	(0)	3426	3355	1485771
207	33.3	0.0	4.9	chr16	57799190	57799271	(32539074)	C	L2c	LINE/L2	(4)	3383	3306	1485771
12	11.2	6.7	0.0	chr16	58756341	58756370	(31581975)	+	(TATGTG)n	Simple_repeat	1	32	(0)	1487791
2309	21.4	11.5	4.2	chr16	62400432	62401143	(27937202)	C	LTR48	LTR/ERV1	(16)	771	1	1493396
12	16.8	0.0	0.0	chr16	75555185	75555211	(14783134)	+	(AATA)n	Simple_repeat	1	27	(0)	1517046
16	17.5	2.6	0.0	chr16	75555731	75555769	(14782576)	+	(CCCCAT)n	Simple_repeat	1	40	(0)	1517047
2448	8.1	0.7	0.0	chr16	89634079	89634386	(703959)	C	AluY	SINE/Alu	(1)	310	1	1541589
528	27.2	0.0	2.4	chr16	90020021	90020186	(318159)	C	L1MC5	LINE/L1	(67)	9237	9076	1542242
341	25.9	10.1	3.0	chr17	2750082	2750266	(80507175)	+	MIR3	SINE/MIR	33	238	(30)	1549848
13	0.0	14.3	0.0	chr17	8139020	8139047	(75118394)	+	(CCGGCT)n	Simple_repeat	1	32	(0)	1560171
13	15.6	3.4	8.2	chr17	10198453	10198511	(73058930)	+	(CGGCGCC)n	Simple_repeat	1	61	(0)	1564239
262	27.8	9.1	0.0	chr17	21551017	21551106	(61706335)	C	Charlie16a	DNA/hAT-Charlie	(214)	128	30	1584442
51	16.9	3.4	1.6	chr17	21551683	21551801	(61705640)	+	G-rich	Low_complexity	1	123	(0)	1584443
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
354	19.1	1.6	0.0	chr17	26879386	26879448	(56377993)	+	AluYj4	SINE/Alu	224	287	(24)	1585979
14076	21.5	0.2	0.1	chr17	26879448	26880125	(56377316)	+	(TGGAA)n	Simple_repeat	1	678	(0)	1585980
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
1545	18.6	0.5	0.9	chr17	26935986	26936392	(56321049)	+	(GAATG)n	Satellite	1	409	(0)	1585984
1545	18.6	0.5	0.9	chr17	26938006	26938444	(56318997)	+	(GAATG)n	Satellite	3	440	(0)	1585992
1545	18.6	0.5	0.9	chr17	26938538	26939277	(56318164)	+	(GAATG)n	Satellite	3	736	(0)	1585994
437	12.7	3.1	0.0	chr17	26939289	26939351	(56318090)	+	AluSz6	SINE/Alu	225	289	(23)	1585995
1545	18.6	0.5	0.9	chr17	26939351	26939821	(56317620)	+	(GAATG)n	Satellite	4	474	(0)	1585996
377	19.1	1.6	0.0	chr17	26939822	26939884	(56317557)	+	AluYj4	SINE/Alu	224	287	(24)	1585997
1545	18.6	0.5	0.9	chr17	26939888	26940398	(56317043)	+	(GAATG)n	Satellite	3	514	(0)	1585998
301	22.2	3.1	0.0	chr17	26940399	26940461	(56316980)	+	AluYj4	SINE/Alu	224	288	(23)	1585999
1545	18.6	0.5	0.9	chr17	26940461	26941027	(56316414)	+	(GAATG)n	Satellite	4	569	(0)	1586000
691	26.9	14.0	0.4	chr17	30717370	30717814	(52539627)	+	L2a	LINE/L2	2753	3252	(174)	1593113
993	4.0	0.0	0.0	chr17	32822870	32822994	(50434447)	+	L1PA5	LINE/L1	6030	6154	(0)	1597471
12	10.9	0.0	8.6	chr17	43124458	43124492	(40132949)	+	A-rich	Low_complexity	1	35	(0)	1617142
12	10.9	0.0	8.6	chr17	43168888	43168922	(40088519)	+	A-rich	Low_complexity	1	35	(0)	1617232
924	21.4	4.8	0.8	chr17	43620381	43620695	(39636746)	C	MER58D	DNA/hAT-Charlie	(3)	383	7	1618254
15	13.9	0.0	0.0	chr17	43620852	43620875	(39636566)	+	(T)n	Simple_repeat	1	24	(0)	1618255
21	19.0	1.1	9.5	chr17	46225114	46225207	(37032234)	+	(CCCCGCG)n	Simple_repeat	1	95	(0)	1623616
2299	10.6	0.0	0.3	chr17	48832111	48832413	(34425028)	+	AluSx1	SINE/Alu	1	302	(10)	1628595
7073	12.9	2.3	5.7	chr17	49182996	49184304	(34073137)	C	MER52C	LTR/ERV1	(14)	1264	2	1629386
11440	8.5	2.8	3.6	chr17	49184305	49184842	(34072599)	+	THE1B-int	LTR/ERVL-MaLR	5	496	(1084)	1629383
186	31.6	10.6	0.0	chr17	50478547	50478622	(32778819)	+	L2b	LINE/L2	3290	3374	(1)	1631862
13	22.1	2.3	2.2	chr17	50478731	50478775	(32778666)	+	G-rich	Low_complexity	1	45	(0)	1631863
17	14.0	0.0	0.0	chr17	50479052	50479083	(32778358)	+	(GTGGCC)n	Simple_repeat	1	32	(0)	1631864
187	28.9	3.8	7.3	chr17	50479170	50479251	(32778190)	+	MIRb	SINE/MIR	36	114	(154)	1631865
2035	10.0	0.0	0.7	chr17	50782730	50783047	(32474394)	C	AluSz	SINE/Alu	(0)	312	2	1632447
1323	22.2	9.7	5.4	chr17	57540465	57540888	(25716553)	+	MLT1C	LTR/ERVL-MaLR	22	465	(2)	1643445
39	9.5	0.0	0.0	chr17	58756097	58756154	(24501287)	+	(GAACCC)n	Simple_repeat	1	58	(0)	1645698
1623	17.0	0.3	3.2	chr17	60505983	60506293	(22751148)	C	AluJo	SINE/Alu	(10)	302	1	1649392
425	35.8	9.9	4.5	chr17	60506294	60506728	(22750713)	+	L2b	LINE/L2	2927	3404	(22)	1649389
1531	15.4	6.5	3.8	chr17	67756350	67756649	(15500792)	+	LTR48	LTR/ERV1	207	489	(298)	1662702
301	22.5	5.3	0.0	chr17	67756652	67756740	(15500701)	+	LTR48	LTR/ERV1	411	504	(51)	1662702
13	21.4	3.9	3.7	chr17	73193331	73193382	(10064059)	+	(GCCCG)n	Simple_repeat	1	54	(0)	1671832
1964	13.3	0.0	5.7	chr17	76248177	76248491	(7008950)	C	AluJb	SINE/Alu	(8)	304	8	1677656
912	16.3	8.0	2.2	chr17	76248733	76248933	(7008508)	C	MER2	DNA/TcMar-Tigger	(0)	345	75	1677657
26	0.0	0.0	0.0	chr17	77320210	77320234	(5937207)	+	(GAG)n	Simple_repeat	1	25	(0)	1679875
14	13.3	9.5	4.3	chr17	80036887	80036949	(3220492)	+	(CCCTCTCT)n	Simple_repeat	1	69	(0)	1684339
235	1.7	0.0	2.4	chr17	80665318	80665564	(2591877)	+	(TTTCC)n	Simple_repeat	1	247	(0)	1685388
2389	4.7	0.7	0.4	chr17	80665565	80665842	(2591599)	C	AluY	SINE/Alu	(32)	279	1	1685389
13	24.8	4.2	0.0	chr17	81636936	81636983	(1620458)	+	(CTGCCTC)n	Simple_repeat	1	50	(0)	1686548
2314	8.5	2.6	1.3	chr17	81862486	81862790	(1394651)	C	AluSx	SINE/Alu	(3)	309	1	1686838
589	24.4	7.1	9.7	chr17	81862791	81862868	(1394573)	+	MER33	DNA/hAT-Charlie	241	317	(7)	1686835
1119	21.3	0.5	0.3	chr17	82147079	82149352	(1108089)	+	(TGGA)n	Simple_repeat	1	2286	(0)	1687231
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
679	25.8	7.3	1.3	chr18	12086473	12089556	(68283729)	+	(CCTGGC)n	Simple_repeat	1	3310	(0)	1706903
1828	19.7	11.1	2.1	chr18	13482671	13483153	(66890132)	C	LTR48	LTR/ERV1	(248)	539	8	1709146
965	24.1	7.7	0.8	chr18	14170423	14170684	(66202601)	+	G-rich	Low_complexity	1	279	(0)	1709967
27	6.2	6.0	0.0	chr18	14170685	14170734	(66202551)	+	(GCCAGG)n	Simple_repeat	1	53	(0)	1709968
965	24.1	7.7	0.8	chr18	14170735	14172052	(66201233)	+	G-rich	Low_complexity	280	1690	(0)	1709969
965	24.1	7.7	0.8	chr18	14172091	14172382	(66200903)	+	G-rich	Low_complexity	1691	1990	(0)	1709971
27	7.3	2.3	0.0	chr18	14172383	14172425	(66200860)	+	(CAGGGC)n	Simple_repeat	1	44	(0)	1709972
965	24.1	7.7	0.8	chr18	14172426	14174423	(66198862)	+	G-rich	Low_complexity	1991	4134	(0)	1709973
1582	19.6	18.8	1.6	chr18	35312056	35312546	(45060739)	+	L1MC4a	LINE/L1	6564	7124	(661)	1733143
10608	12.0	3.4	0.2	chr18	36037557	36039134	(44334151)	+	THE1C-int	LTR/ERVL-MaLR	3	1631	(0)	1734180
208	37.5	6.9	10.4	chr18	40113281	40113521	(40259764)	+	L2b	LINE/L2	3087	3318	(57)	1739597
28122	17.0	7.8	7.8	chr18	52790112	52792754	(27580531)	C	HUERS-P3b-int	LTR/ERV1	(7)	2901	90	1758952
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
178	22.0	2.7	4.8	chr18	56270354	56270830	(24102455)	+	G-rich	Low_complexity	1	467	(0)	1763855
14	20.8	2.2	2.1	chr18	63214135	63214180	(17159105)	+	G-rich	Low_complexity	1	47	(0)	1774716
247	28.3	11.6	3.9	chr18	70292218	70292320	(10080965)	+	MIRb	SINE/MIR	77	188	(80)	1784351
1826	15.0	0.3	3.3	chr18	70292348	70292647	(10080638)	C	AluJb	SINE/Alu	(21)	291	1	1784352
236	32.6	13.0	6.7	chr18	70292713	70293143	(10080142)	+	L2a	LINE/L2	2934	3395	(31)	1784353
1031	26.8	13.8	2.2	chr18	79200300	79200694	(1172591)	+	L1MEf	LINE/L1	2654	3070	(3249)	1795300
252	6.5	1.3	5.3	chr19	245537	246002	(58371614)	+	(TAACCC)n	Simple_repeat	1	472	(0)	1796617
5485	10.1	23.0	1.1	chr19	246007	247536	(58370080)	C	TAR1	Satellite/telo	(43)	1864	1	1796618
940	21.6	0.0	0.0	chr19	741844	742010	(57875606)	C	AluJo	SINE/Alu	(9)	303	137	1797500
864	12.9	0.0	0.8	chr19	1027393	1027524	(57590092)	+	FLAM_C	SINE/Alu	1	131	(12)	1798102
2529	7.7	0.0	0.0	chr19	1194128	1194437	(57423179)	C	AluSx1	SINE/Alu	(2)	310	1	1798383
12	11.2	4.3	8.3	chr19	1930116	1930161	(56687455)	+	G-rich	Low_complexity	1	48	(0)	1799778
96	49.1	3.2	0.0	chr19	2418298	2419197	(56198419)	+	(TCTC)n	Simple_repeat	1	929	(0)	1800765
2324	10.2	0.0	0.0	chr19	2419199	2419501	(56198115)	C	AluSg	SINE/Alu	(7)	303	1	1800766
500	23.5	23.1	0.3	chr19	4444349	4444721	(54172895)	C	MLT1D	LTR/ERVL-MaLR	(7)	498	29	1805597
15	8.8	0.0	0.0	chr19	4558398	4558421	(54059195)	+	(CAG)n	Simple_repeat	1	24	(0)	1805856
2353	10.3	0.0	0.3	chr19	4913253	4913554	(53704062)	C	AluSq	SINE/Alu	(12)	301	1	1806857
203	31.6	4.8	0.0	chr19	4913612	4913690	(53703926)	C	MIR	SINE/MIR	(163)	99	17	1806858
12	18.1	0.0	3.0	chr19	6709607	6709639	(51907977)	+	(CCAGCC)n	Simple_repeat	1	33	(0)	1810971
1126	16.9	0.4	10.2	chr19	12386015	12386269	(46231347)	C	AluJr	SINE/Alu	(15)	297	68	1824353
931	17.6	0.0	0.0	chr19	12386270	12386411	(46231205)	+	AluJo	SINE/Alu	135	276	(36)	1824354
16	22.4	4.1	0.0	chr19	12386420	12386468	(46231148)	+	GA-rich	Low_complexity	1	51	(0)	1824355
72	4.1	0.0	0.0	chr19	12386471	12386547	(46231069)	+	(GGAAGG)n	Simple_repeat	1	77	(0)	1824356
385	21.9	0.0	0.0	chr19	12386553	12386625	(46230991)	C	AluJr	SINE/Alu	(233)	79	7	1824357
1470	26.5	4.5	6.4	chr19	12386777	12387363	(46230253)	C	L1M4	LINE/L1	(856)	5290	4701	1824358
884	20.5	0.0	1.2	chr19	12425830	12425990	(46191626)	+	FRAM	SINE/Alu	4	162	(14)	1824434
42	13.4	4.7	0.0	chr19	12425991	12426082	(46191534)	+	G-rich	Low_complexity	1	96	(0)	1824435
370	23.3	0.0	0.0	chr19	12426085	12426157	(46191459)	C	AluJr	SINE/Alu	(233)	79	7	1824436
293	29.1	6.6	0.8	chr19	12426173	12426300	(46191316)	C	MLT1A	LTR/ERVL-MaLR	(238)	136	1	1824437
12	7.5	6.7	3.1	chr19	13163845	13163874	(45453742)	+	(GCCCT)n	Simple_repeat	1	32	(0)	1826010
2461	16.5	10.0	0.8	chr19	13741768	13742293	(44875323)	+	LTR48	LTR/ERV1	68	647	(140)	1827668
996	4.8	1.6	0.8	chr19	13742295	13742446	(44875170)	C	AluSc	SINE/Alu	(0)	309	155	1827669
2367	11.9	0.3	0.0	chr19	13784569	13784909	(44832707)	+	AluSx1	SINE/Alu	1	312	(0)	1827785
214	28.4	2.9	10.5	chr19	16080201	16080314	(42537302)	+	MIRc	SINE/MIR	44	148	(120)	1833077
2123	13.2	1.0	0.3	chr19	16080529	16080830	(42536786)	+	AluSz6	SINE/Alu	1	304	(8)	1833078
1112	18.3	2.3	0.5	chr19	16680830	16681043	(41936573)	C	MER20	DNA/hAT-Charlie	(0)	219	2	1834437
1707	18.3	0.0	4.1	chr19	16776647	16776963	(41840653)	+	AluJo	SINE/Alu	1	304	(8)	1834743
487	15.8	0.9	5.2	chr19	16776964	16778059	(41839557)	+	GA-rich	Low_complexity	1	1106	(0)	1834744
213	27.0	11.3	6.2	chr19	16778106	16778288	(41839328)	C	MIR1_Amn	SINE/MIR	(5)	203	17	1834745
146	0.6	3.6	4.0	chr19	19744104	19744295	(38873321)	+	(TTCCT)n	Simple_repeat	1	199	(0)	1841552
296	26.7	0.0	6.9	chr19	27773989	27774089	(30843527)	C	AluJb	SINE/Alu	(62)	250	157	1847884
15	18.8	2.3	2.2	chr19	27774161	27774204	(30843412)	+	(TTGTTCT)n	Simple_repeat	1	45	(0)	1847885
193	29.9	2.9	2.9	chr19	29928252	29928320	(28689296)	+	MER5B	DNA/hAT-Charlie	11	79	(99)	1851178
941	16.4	2.1	2.1	chr19	29928651	29928843	(28688773)	C	MER53	DNA/hAT	(0)	193	1	1851179
2217	12.8	0.6	0.6	chr19	32669716	32670027	(25947589)	+	AluSx1	SINE/Alu	1	312	(0)	1855277
2853	10.9	8.8	1.9	chr19	32872376	32872890	(25744726)	C	MER34C2	LTR/ERV1	(1)	554	1	1855643
820	22.5	2.6	0.0	chr19	32872910	32873060	(25744556)	C	FRAM	SINE/Alu	(21)	155	1	1855644
12739	0.5	0.0	2.1	chr19	36270447	36272042	(22345574)	+	SST1	Satellite/centr	1	1563	(0)	1862253
24	29.7	0.0	2.5	chr19	36272043	36272123	(22345493)	+	(GT)n	Simple_repeat	1	81	(0)	1862254
26	23.7	3.8	3.6	chr19	36272113	36272129	(22345487)	+	(CTGTCT)n	Simple_repeat	1	66	(44)	1862255
36	20.5	1.2	1.2	chr19	36272130	36272209	(22345407)	+	(TC)n	Simple_repeat	1	81	(0)	1862256
11383	1.6	0.0	2.0	chr19	36308415	36309981	(22307635)	+	SST1	Satellite/centr	1	1535	(28)	1862299
749	25.7	10.6	1.3	chr19	37505998	37506297	(21111319)	+	LTR16C	LTR/ERVL	148	478	(11)	1864562
298	29.7	3.0	3.0	chr19	38634615	38634746	(19982870)	+	L1MC5a	LINE/L1	1103	1234	(1543)	1867145
253	28.3	9.2	0.0	chr19	38634785	38634883	(19982733)	C	L2a	LINE/L2	(616)	2803	2695	1867138
2056	13.5	0.7	2.6	chr19	39229684	39229995	(19387621)	+	AluJb	SINE/Alu	1	306	(6)	1868605
53	25.8	1.9	1.9	chr19	39229996	39230152	(19387464)	+	G-rich	Low_complexity	1	160	(0)	1868606
87	0.0	0.0	0.0	chr19	39230153	39230229	(19387387)	+	(AAGGA)n	Simple_repeat	1	77	(0)	1868607
31	5.8	0.0	0.0	chr19	39230324	39230359	(19387257)	+	(TG)n	Simple_repeat	1	36	(0)	1868608
804	15.7	0.0	0.0	chr19	39230373	39230487	(19387129)	C	AluJb	SINE/Alu	(197)	115	1	1868609
324	26.8	7.1	8.7	chr19	39230488	39230659	(19386957)	C	MLT1L	LTR/ERVL-MaLR	(165)	445	277	1868610
619	12.7	1.0	2.1	chr19	39403058	39403506	(19214110)	C	MSR1	Satellite	(0)	444	1	1869004
30	22.1	0.0	3.6	chr19	42177009	42177092	(16440524)	+	(GCGG)n	Simple_repeat	1	84	(0)	1874738
17	6.5	2.8	5.4	chr19	42177108	42177143	(16440473)	+	(GCCC)n	Simple_repeat	1	37	(0)	1874739
28	3.3	0.0	0.0	chr19	42177252	42177282	(16440334)	+	(CCCGCT)n	Simple_repeat	1	31	(0)	1874740
2206	9.4	0.6	4.1	chr19	43447946	43448265	(15169351)	C	AluSx1	SINE/Alu	(3)	309	1	1876791
1344	18.2	6.8	0.8	chr19	43448280	43448528	(15169088)	+	MER66B	LTR/ERV1	1	265	(221)	1876792
2222	11.5	0.3	1.6	chr19	43448531	43448844	(15168772)	+	AluSx	SINE/Alu	1	310	(2)	1876793
230	31.4	1.9	4.7	chr19	43902153	43902259	(14715357)	+	L2a	LINE/L2	3320	3423	(3)	1877886
390	27.7	5.7	0.7	chr19	43951581	43951729	(14665887)	+	MIR	SINE/MIR	83	239	(23)	1877972
2479	9.3	0.3	0.0	chr19	45806391	45806700	(12810916)	+	AluY	SINE/Alu	1	311	(0)	1882300
2312	10.8	0.3	0.0	chr19	45806884	45807190	(12810426)	C	AluSg	SINE/Alu	(1)	309	2	1882301
12	15.6	0.0	9.3	chr19	48737800	48737842	(9879774)	+	(GCCCC)n	Simple_repeat	1	43	(0)	1889498
4267	15.9	0.8	4.1	chr19	50136289	50136658	(8480958)	C	L1P4	LINE/L1	(2928)	3218	2854	1892740
1120	9.2	0.0	13.3	chr19	50136668	50136863	(8480753)	+	AluSx	SINE/Alu	137	306	(6)	1892742
323	25.0	10.1	2.4	chr19	50136865	50137073	(8480543)	C	L1MC4	LINE/L1	(5098)	1117	891	1892743
2332	11.5	0.0	0.0	chr19	50329985	50330296	(8287320)	+	AluSx1	SINE/Alu	1	312	(0)	1893283
778	16.9	0.0	3.9	chr19	52179025	52179154	(6438462)	C	FLAM_C	SINE/Alu	(18)	125	1	1896929
2314	9.3	0.0	1.3	chr19	52291477	52291776	(6325840)	+	AluSx3	SINE/Alu	1	296	(15)	1897194
1526	20.2	1.0	1.7	chr19	52291793	52292089	(6325527)	+	AluJr	SINE/Alu	1	295	(17)	1897195
3658	6.7	3.5	0.0	chr19	52735281	52735746	(5881870)	+	LTR2B	LTR/ERV1	1	483	(0)	1898076
2906	1.0	0.0	0.0	chr19	52820109	52820416	(5797200)	C	AluYb8	SINE/Alu	(10)	308	1	1898245
14	28.2	0.0	0.0	chr19	52820485	52820531	(5797085)	+	(CTCTTCT)n	Simple_repeat	1	47	(0)	1898246
53	18.5	4.9	0.0	chr19	57052976	57053100	(1564516)	+	(ACAT)n	Simple_repeat	1	131	(0)	1907059
230	8.5	4.8	3.3	chr19	57053101	57053161	(1564455)	C	LTR66	LTR/ERVL	(171)	439	378	1907060
363	23.1	0.0	0.0	chr19	57053149	57053226	(1564390)	C	MER96B	DNA/hAT-Tip100	(330)	87	10	1907061
218	30.6	11.3	3.7	chr19	57053324	57053567	(1564049)	+	L2	LINE/L2	2461	2725	(694)	1907062
35	0.0	0.0	0.0	chr2	2158619	2158648	(240034881)	+	(AC)n	Simple_repeat	1	30	(0)	1912903
30	0.0	0.0	0.0	chr2	2158704	2158729	(240034800)	+	(AC)n	Simple_repeat	1	26	(0)	1912903
835	23.7	8.6	0.7	chr2	5041369	5041648	(237151881)	+	MLT1A0	LTR/ERVL-MaLR	1	304	(61)	1916546
138	5.9	7.2	0.8	chr2	5041651	5041886	(237151643)	+	(CTTCCC)n	Simple_repeat	1	253	(0)	1916547
1631	18.8	4.6	0.0	chr2	5041888	5042158	(237151371)	C	AluJb	SINE/Alu	(28)	284	1	1916548
32544	20.9	1.9	1.6	chr2	6838364	6846789	(235346740)	C	HUERS-P3-int	LTR/ERV1	(224)	8695	262	1919104
337	30.1	10.2	0.8	chr2	9160614	9160737	(233032792)	C	L1M5	LINE/L1	(1050)	5096	4960	1922454
437	29.8	6.3	10.2	chr2	9160753	9161042	(233032487)	+	LTR16A2	LTR/ERVL	147	431	(64)	1922458
2397	9.4	0.7	0.0	chr2	9161043	9161351	(233032178)	+	AluSx3	SINE/Alu	1	311	(0)	1922459
798	27.2	5.7	4.8	chr2	10392543	10392807	(231800722)	C	MIR	SINE/MIR	(0)	262	1	1924689
1114	12.0	4.2	0.0	chr2	26816377	26816534	(215376995)	C	FRAM	SINE/Alu	(11)	165	1	1950682
420	30.1	9.3	2.6	chr2	28389764	28389992	(213803537)	+	MIRb	SINE/MIR	23	268	(0)	1953478
14	27.1	6.1	0.0	chr2	29246189	29246254	(212947275)	+	(AGGC)n	Simple_repeat	1	70	(0)	1955010
12	20.8	0.0	2.9	chr2	29246454	29246488	(212947041)	+	(CCAC)n	Simple_repeat	1	35	(0)	1955011
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
595	5.0	0.0	14.0	chr2	55108710	55108802	(187084727)	+	MADE1	DNA/TcMar-Mariner	1	80	(0)	1995309
202	1.1	0.0	0.0	chr2	60389034	60389216	(181804313)	+	(AGGAA)n	Simple_repeat	1	183	(0)	2002388
255	4.2	0.0	0.4	chr2	67906469	67906741	(174286788)	+	(GGAAA)n	Simple_repeat	1	273	(0)	2014731
654	29.2	12.4	1.9	chr2	70575863	70576180	(171617349)	+	MLT1J1	LTR/ERVL-MaLR	65	420	(24)	2019313
5691	12.9	2.9	1.4	chr2	71312365	71313293	(170880236)	C	Tigger2	DNA/TcMar-Tigger	(0)	2718	1776	2020475
19	16.2	0.0	4.3	chr2	71313294	71313305	(170880224)	+	(CCTTT)n	Simple_repeat	1	44	(0)	2020476
21	3.2	3.1	0.0	chr2	71313306	71313337	(170880192)	+	(TCCCCT)n	Simple_repeat	1	33	(0)	2020477
860	5.9	0.0	1.0	chr2	71313374	71313475	(170880054)	C	AluSq2	SINE/Alu	(49)	264	164	2020478
53	21.0	5.2	2.7	chr2	71313479	71313652	(170879877)	+	(TTTTCTT)n	Simple_repeat	1	183	(0)	2020479
12	18.1	2.4	4.8	chr2	74715401	74715441	(167478088)	+	(CGCGG)n	Simple_repeat	1	42	(0)	2025835
796	26.4	7.2	0.9	chr2	87352517	87356077	(154837452)	+	(TGGCCC)n	Simple_repeat	1	3817	(0)	2044127
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
21	8.8	2.8	0.0	chr2	91478098	91478133	(150715396)	+	(CCG)n	Simple_repeat	1	37	(0)	2048369
792	26.3	7.2	1.1	chr2	91564429	91567995	(150625534)	+	G-rich	Low_complexity	1	3822	(0)	2048492
710	27.1	7.5	0.9	chr2	91981308	91984061	(150209468)	+	(TGGCCC)n	Simple_repeat	1	2933	(0)	2049159
406	19.8	8.3	1.8	chr2	96960064	96960176	(145233353)	+	Kanga2_a	DNA/TcMar-Tc2	684	804	(84)	2053071
2403	8.0	1.3	0.0	chr2	98047450	98047750	(144145779)	C	AluSp	SINE/Alu	(8)	305	1	2054470
1630	18.9	2.1	4.4	chr2	98047751	98047886	(144145643)	+	MER41-int	LTR/ERV1	1167	1293	(6244)	2054469
81	8.1	3.0	1.4	chr2	98047887	98048020	(144145509)	+	(TTCCT)n	Simple_repeat	1	138	(0)	2054471
2226	10.5	0.3	0.0	chr2	98048023	98048317	(144145212)	C	AluSp	SINE/Alu	(17)	296	1	2054472
3584	14.7	17.3	1.1	chr2	98048319	98049239	(144144290)	+	MER41-int	LTR/ERV1	517	1593	(4353)	2054473
48	25.5	2.9	4.7	chr2	108534262	108534469	(133659060)	+	(CGCCC)n	Simple_repeat	1	214	(0)	2069392
24	2.5	7.0	2.2	chr2	108534653	108534695	(133658834)	+	(CGGGC)n	Simple_repeat	1	46	(0)	2069393
341	30.3	3.8	5.4	chr2	108995635	108995819	(133197710)	+	MLT1J	LTR/ERVL-MaLR	99	280	(232)	2070099
1852	7.7	13.0	0.0	chr2	109199080	109199326	(132994203)	+	AluY	SINE/Alu	3	286	(25)	2070423
603	0.2	0.2	0.0	chr2	109199331	109199851	(132993678)	+	(AATGG)n	Simple_repeat	1	522	(0)	2070424
238	23.7	1.7	0.0	chr2	109199866	109199924	(132993605)	C	MLT1A0	LTR/ERVL-MaLR	(314)	60	1	2070421
310	13.9	2.7	2.7	chr2	109199944	109200017	(132993512)	+	MER20	DNA/hAT-Charlie	31	104	(115)	2070425
248	20.8	18.1	0.0	chr2	109200002	109200078	(132993451)	+	MER20	DNA/hAT-Charlie	123	216	(3)	2070426
13	15.4	2.5	4.9	chr2	113583676	113583715	(128609814)	+	G-rich	Low_complexity	1	41	(0)	2077016
3111	12.1	0.9	1.4	chr2	113601977	113602680	(128590849)	+	TAR1	Satellite/telo	1	700	(1434)	2077035
136	13.6	0.4	2.4	chr2	113602682	113602928	(128590601)	+	G-rich	Low_complexity	1	248	(0)	2077036
329	8.5	1.5	3.4	chr2	113602929	113603477	(128590052)	+	(CTAACC)n	Simple_repeat	1	557	(0)	2077037
2317	10.7	0.7	0.7	chr2	119417671	119417967	(122775562)	C	AluSp	SINE/Alu	(13)	300	3	2085296
2643	19.2	9.0	2.9	chr2	119417968	119418325	(122775204)	+	LTR48	LTR/ERV1	342	732	(55)	2085295
1543	24.1	10.9	3.8	chr2	119537441	119537720	(122655809)	+	MLT1G3	LTR/ERVL-MaLR	79	384	(211)	2085540
964	28.5	11.2	5.8	chr2	119537721	119538275	(122655254)	+	LTR49	LTR/ERV1	5	593	(2)	2085541
239	32.6	9.1	3.1	chr2	121076032	121076407	(121117122)	+	L2c	LINE/L2	2972	3368	(7)	2088003
487	25.4	7.7	2.3	chr2	121300981	121301153	(120892376)	+	MLT1J	LTR/ERVL-MaLR	224	406	(106)	2088465
29	4.3	6.0	0.0	chr2	121301292	121301306	(120892223)	+	(AAGG)n	Simple_repeat	1	17	(0)	2088467
123	1.7	0.0	0.8	chr2	121301307	121301427	(120892102)	+	(AGGAA)n	Simple_repeat	1	121	(0)	2088468
13	19.3	2.2	4.3	chr2	130356489	130356533	(111836996)	+	(GCGG)n	Simple_repeat	1	46	(0)	2101707
12	21.2	2.1	4.2	chr2	131475789	131475835	(110717694)	+	(GGCAGG)n	Simple_repeat	1	48	(0)	2103351
387	30.6	0.9	0.0	chr2	152922501	152922608	(89270921)	+	LTR85b	LTR/Gypsy?	643	751	(33)	2133154
24	30.0	1.1	1.1	chr2	152922621	152922708	(89270821)	+	(TTCC)n	Simple_repeat	1	89	(0)	2133155
174	14.7	4.4	4.0	chr2	152922900	152923333	(89270196)	+	(TTCCC)n	Simple_repeat	1	435	(0)	2133156
1704	16.5	5.0	0.4	chr2	152923338	152923482	(89270047)	C	AluJo	SINE/Alu	(33)	279	135	2133157
32	0.0	0.0	0.0	chr2	152923483	152923512	(89270017)	+	(T)n	Simple_repeat	1	30	(0)	2133158
2908	21.6	5.5	2.9	chr2	155194412	155195166	(86998363)	C	LTR48	LTR/ERV1	(45)	742	1	2135900
150	10.1	3.5	3.3	chr2	157826681	157826969	(84366560)	+	A-rich	Low_complexity	1	299	(0)	2139243
30	11.9	0.0	0.0	chr2	160407006	160407051	(81786478)	+	(AC)n	Simple_repeat	1	46	(0)	2143035
14	27.8	4.9	2.4	chr2	160407196	160407212	(81786317)	+	(CCCTG)n	Simple_repeat	1	33	(52)	2143036
11	17.7	5.0	2.4	chr2	160407213	160407252	(81786277)	+	(CTGCCC)n	Simple_repeat	1	42	(0)	2143037
14	27.8	4.9	2.4	chr2	160407253	160407276	(81786253)	+	(CCCTG)n	Simple_repeat	34	85	(0)	2143036
67	0.0	0.0	0.0	chr2	161278891	161278950	(80914579)	+	(TCCT)n	Simple_repeat	1	60	(0)	2144204
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
15	30.4	2.5	2.4	chr2	163348534	163348613	(78844916)	+	(CTGCTT)n	Simple_repeat	1	82	(0)	2146828
2515	20.2	8.3	2.5	chr2	168320907	168321452	(73872077)	+	LTR48	LTR/ERV1	12	600	(187)	2153386
3173	19.7	9.3	2.5	chr2	168321453	168322211	(73871318)	C	LTR8B	LTR/ERV1	(0)	820	5	2153387
20	0.0	0.0	0.0	chr2	169799279	169799300	(72394229)	+	(T)n	Simple_repeat	1	22	(0)	2155629
1808	16.7	3.9	2.3	chr2	170882432	170882736	(71310793)	+	AluJr	SINE/Alu	2	311	(1)	2157399
20	15.1	2.2	2.1	chr2	176080615	176080660	(66112869)	+	(GCC)n	Simple_repeat	1	47	(0)	2165642
908	31.2	7.3	2.0	chr2	180524552	180525169	(61668360)	+	L2a	LINE/L2	2738	3426	(0)	2171568
18	20.2	3.9	0.0	chr2	186693990	186694040	(55499489)	+	(CTCCTC)n	Simple_repeat	1	53	(0)	2179447
13	18.3	2.6	2.5	chr2	186694092	186694138	(55499391)	+	(CGCCGCC)n	Simple_repeat	1	47	(0)	2179448
24	22.8	0.0	0.0	chr2	186694300	186694356	(55499173)	+	(CAG)n	Simple_repeat	1	57	(0)	2179449
395	21.9	10.4	4.2	chr2	191019976	191020190	(51173339)	+	L1ME4a	LINE/L1	5819	6048	(76)	2185240
14	13.8	0.0	5.6	chr2	191020468	191020503	(51173026)	+	(GCAGGC)n	Simple_repeat	1	36	(0)	2185241
85	5.1	0.0	5.8	chr2	195296649	195296787	(46896742)	+	(GAAAG)n	Simple_repeat	1	139	(0)	2190699
32	0.0	3.0	0.0	chr2	195296846	195296878	(46896651)	+	(GGGAAG)n	Simple_repeat	1	34	(0)	2190700
2371	6.2	3.4	0.0	chr2	196904457	196904744	(45288785)	+	AluSc	SINE/Alu	2	299	(10)	2193065
1761	31.5	9.1	3.2	chr2	196904745	196904923	(45288606)	C	MER115	DNA/hAT-Tip100	(501)	192	2	2193064
673	25.0	6.3	1.1	chr2	206989230	206989512	(35204017)	C	LTR16A1	LTR/ERVL	(0)	456	158	2209403
285	21.9	14.6	9.3	chr2	207770406	207770457	(34423072)	C	MIRb	SINE/MIR	(15)	253	203	2210635
43	17.0	0.0	0.0	chr2	218774247	218774326	(23419203)	+	GA-rich	Low_complexity	1	80	(0)	2226779
1986	27.0	5.5	7.9	chr2	218774521	218775103	(23418426)	C	MER21C	LTR/ERVL	(126)	812	262	2226780
507	27.4	9.9	1.2	chr2	221547751	221547916	(20645613)	+	MIR	SINE/MIR	33	214	(48)	2231232
1357	9.6	0.5	0.0	chr2	221548007	221548204	(20645325)	+	MSTB	LTR/ERVL-MaLR	1	199	(227)	2231233
16	0.0	0.0	0.0	chr2	227448545	227448561	(14744968)	+	(A)n	Simple_repeat	1	17	(0)	2240525
28	15.6	4.4	1.4	chr2	227448572	227448656	(14744873)	+	(CCTTT)n	Simple_repeat	1	87	(0)	2240526
2164	10.2	0.0	0.0	chr2	231017928	231018220	(11175309)	C	AluSx	SINE/Alu	(15)	297	5	2246077
687	21.9	6.5	5.5	chr2	231018308	231018630	(11174899)	+	MER34C2	LTR/ERV1	239	551	(4)	2246078
398	21.5	16.3	0.0	chr2	231483040	231483188	(10710341)	+	MER45A	DNA/hAT-Tip100	1	178	(0)	2246964
608	27.2	1.9	1.9	chr2	233251177	233251337	(8942192)	C	MIRb	SINE/MIR	(26)	242	82	2250204
4053	17.4	6.2	2.8	chr2	237066130	237066887	(5126642)	+	LTR48	LTR/ERV1	2	787	(0)	2255901
17	22.5	1.6	4.7	chr2	239706787	239706849	(2486680)	+	(TCCC)n	Simple_repeat	1	64	(0)	2259227
719	8.0	0.0	0.0	chr2	239706856	239707777	(2485752)	+	(TGCCCTGCCC)n	Simple_repeat	1	922	(0)	2259228
384	18.8	2.3	0.0	chr2	239707977	239708061	(2485468)	C	L1MB8	LINE/L1	(2)	6176	6090	2259229
1966	23.1	0.2	0.1	chr20	60221	63215	(64380952)	+	(ATTCC)n	Simple_repeat	2	3000	(0)	2262201
2348	9.8	0.0	1.9	chr20	1117329	1117643	(63326524)	C	AluSz	SINE/Alu	(3)	309	1	2264465
534	28.4	10.1	2.6	chr20	1117644	1117800	(63326367)	C	L2a	LINE/L2	(596)	2823	2660	2264463
206	15.2	0.0	0.0	chr20	2873164	2873196	(61570971)	+	MIRc	SINE/MIR	121	153	(115)	2267730
15	13.9	0.0	0.0	chr20	2873523	2873546	(61570621)	+	(CG)n	Simple_repeat	1	24	(0)	2267731
17	27.7	2.4	4.6	chr20	2873554	2873638	(61570529)	+	(GCC)n	Simple_repeat	1	87	(0)	2267732
15	19.2	0.0	0.0	chr20	2873840	2873875	(61570292)	+	A-rich	Low_complexity	1	36	(0)	2267733
420	31.5	17.1	2.2	chr20	3744486	3744852	(60699315)	+	L2	LINE/L2	2637	3069	(350)	2269424
489	28.1	5.3	4.9	chr20	9075564	9075915	(55368252)	C	MER102b	DNA/hAT-Charlie	(12)	319	1	2278356
16	0.0	5.0	0.0	chr20	10730652	10730671	(53713496)	+	(TC)n	Simple_repeat	1	21	(0)	2280949
81	23.2	2.8	3.1	chr20	10730809	10731055	(53713112)	+	(TCCTT)n	Simple_repeat	1	254	(0)	2280950
18	31.0	1.8	6.1	chr20	10730962	10730973	(53713194)	+	(CTTT)n	Simple_repeat	1	61	(54)	2280951
14	38.6	0.0	4.3	chr20	10730974	10731066	(53713101)	+	(CTTTT)n	Simple_repeat	1	93	(0)	2280952
18	31.0	1.8	6.1	chr20	10731067	10731074	(53713093)	+	(CTTT)n	Simple_repeat	62	115	(0)	2280951
1326	24.2	5.8	1.5	chr20	23234795	23235156	(41209011)	C	MLT1H	LTR/ERVL-MaLR	(177)	372	13	2299411
497	22.1	10.3	0.0	chr20	23235581	23235711	(41208456)	+	MamGypLTR3	LTR/Gypsy	593	738	(156)	2299412
781	24.4	5.6	5.6	chr20	23235895	23236250	(41207917)	C	L1MC4	LINE/L1	(0)	8042	7687	2299413
2308	29.1	5.8	6.1	chr20	25867794	25869361	(38574806)	C	SST1	Satellite/centr	(1)	1562	1	2302878
411	24.8	0.0	9.9	chr20	29411577	29411728	(35032439)	+	LSAU	Satellite	2	138	(360)	2304090
4070	20.9	7.5	2.8	chr20	29428506	29430401	(35013766)	+	L1MA9	LINE/L1	4249	6312	(0)	2304112
2860	28.3	4.9	5.5	chr20	30283322	30285229	(34158938)	+	SST1	Satellite/centr	1	1895	(14)	2304820
1030	9.4	0.8	0.0	chr20	30866424	30866600	(33577567)	+	BSR/Beta	Satellite	1	178	(0)	2305529
443	29.7	6.3	2.0	chr20	33262452	33262695	(31181472)	+	MER113	DNA/hAT-Charlie	263	517	(4)	2310291
642	26.4	6.6	5.0	chr20	36439094	36439332	(28004835)	C	MIRb	SINE/MIR	(0)	268	26	2317626
943	18.8	4.1	1.2	chr20	38382939	38383209	(26060958)	+	MER77B	LTR/ERVL	5	313	(291)	2322057
1360	16.1	14.1	0.0	chr20	38383217	38383515	(26060652)	C	LTR48	LTR/ERV1	(236)	551	204	2322058
1720	19.2	3.4	0.0	chr20	38383510	38383852	(26060315)	+	MER77B	LTR/ERVL	329	683	(17)	2322057
5009	18.5	8.9	1.8	chr20	38843725	38844905	(25599262)	C	Charlie1a	DNA/hAT-Charlie	(181)	1274	1	2322995
339	26.3	5.6	8.4	chr20	38844906	38845070	(25599097)	C	LTR33	LTR/ERVL	(99)	416	257	2322992
936	21.8	0.0	0.0	chr20	38845301	38845465	(25598702)	+	AluJr	SINE/Alu	137	301	(11)	2322996
12	9.7	0.0	0.0	chr20	45629717	45629738	(18814429)	+	(TCCT)n	Simple_repeat	1	22	(0)	2336003
242	31.4	9.3	4.0	chr20	46405909	46406043	(18038124)	C	L2b	LINE/L2	(608)	2811	2665	2337606
51	0.0	0.0	0.0	chr20	46411196	46411239	(18032928)	+	(GT)n	Simple_repeat	1	44	(0)	2337619
789	25.5	7.4	6.7	chr20	48808491	48808864	(15635303)	+	L2b	LINE/L2	2704	3080	(339)	2342920
203	25.0	1.8	0.0	chr20	48808873	48808928	(15635239)	C	MIR	SINE/MIR	(150)	112	56	2342921
358	27.7	6.3	7.5	chr20	48808977	48809136	(15635031)	+	MIRb	SINE/MIR	87	244	(24)	2342922
240	31.6	1.2	0.0	chr20	52392036	52392114	(12052053)	+	MLT1J	LTR/ERVL-MaLR	1	80	(530)	2351416
412	31.7	8.6	8.2	chr20	52392152	52392543	(12051624)	+	MLT1J	LTR/ERVL-MaLR	119	512	(0)	2351416
50	19.6	2.6	0.0	chr20	59767777	59767892	(4676275)	+	(TTTCC)n	Simple_repeat	1	119	(0)	2365011
21	28.8	1.1	3.3	chr20	59767907	59767995	(4676172)	+	(TCTC)n	Simple_repeat	1	90	(0)	2365012
278	20.6	3.5	1.3	chr20	61839278	61839968	(2604199)	+	(GT)n	Simple_repeat	1	715	(0)	2367810
1142	23.0	0.4	0.2	chr21	5327288	5328868	(41381115)	+	(TGGAA)n	Simple_repeat	1	1581	(0)	2371008
1142	23.0	0.4	0.2	chr21	5328933	5329957	(41380026)	+	(TGGAA)n	Simple_repeat	2	1031	(0)	2371010
10927	3.9	0.1	0.7	chr21	5329982	5331757	(41378226)	C	L1HS	LINE/L1	(3478)	2668	905	2371011
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
2828	18.2	1.6	1.8	chr21	7942700	7957766	(38752217)	+	(CATTC)n	Satellite	1	15309	(0)	2373121
40632	0.2	1.2	0.8	chr21	8214773	8218941	(38491042)	+	LSU-rRNA_Hsa	rRNA	878	5034	(1)	2373279
797	22.4	0.5	0.1	chr21	8229975	8230765	(38479218)	+	(TCTC)n	Simple_repeat	2	795	(0)	2373327
446	20.9	0.1	6.5	chr21	8230776	8230919	(38479064)	+	MER39B	LTR/ERV1	298	454	(253)	2373328
880	13.0	0.0	0.0	chr21	8239093	8239215	(38470768)	C	AluSx3	SINE/Alu	(9)	302	180	2373343
47	0.0	0.0	0.0	chr21	8239234	8239276	(38470707)	+	(T)n	Simple_repeat	1	43	(0)	2373344
37669	0.4	1.2	0.8	chr21	8397807	8401980	(38308003)	+	LSU-rRNA_Hsa	rRNA	878	5034	(1)	2373509
24	15.5	7.0	0.0	chr21	8401981	8402037	(38307946)	+	(CG)n	Simple_repeat	1	61	(0)	2373511
14	13.3	9.8	0.0	chr21	8402028	8402068	(38307915)	+	(CGTC)n	Simple_repeat	1	45	(0)	2373512
312	38.2	6.5	3.6	chr21	8419786	8420171	(38289812)	C	HAL1	LINE/L1	(1230)	1277	880	2373573
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
12	20.8	0.0	2.9	chr21	8434102	8434136	(38275847)	+	(CCG)n	Simple_repeat	1	35	(0)	2373611
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
4113	22.1	5.3	2.3	chr21	8774924	8776184	(37933799)	C	MER52A	LTR/ERV1	(0)	1755	1	2373956
800	10.7	0.6	0.5	chr21	9096388	9100565	(37609418)	+	CER	Satellite	1	4180	(0)	2374227
3851	19.9	5.7	2.1	chr21	9118947	9120155	(37589828)	+	MER52A	LTR/ERV1	502	1755	(0)	2374256
1738	18.7	0.7	1.0	chr21	9144154	9144447	(37565536)	C	AluJb	SINE/Alu	(18)	294	2	2374279
3424	21.2	4.9	9.9	chr21	9144448	9144867	(37565116)	C	LTR49-int	LTR/ERV1	(1760)	4571	4283	2374278
314	37.0	7.3	1.7	chr21	9195431	9195661	(37514322)	C	MIRb	SINE/MIR	(0)	268	24	2374335
808	4.0	0.0	0.0	chr21	9195764	9195863	(37514120)	C	L1PA2	LINE/L1	(0)	6155	6056	2374336
436	12.7	0.0	0.0	chr21	9246781	9246835	(37463148)	+	AluYj4	SINE/Alu	225	279	(32)	2374338
404	15.6	1.5	0.0	chr21	9247151	9247214	(37462769)	+	AluYj4	SINE/Alu	224	288	(23)	2374339
74	12.3	0.0	0.0	chr21	9247783	9247915	(37462068)	+	(TGGAA)n	Simple_repeat	1	133	(0)	2374340
378	16.1	3.0	0.2	chr21	9247917	9247990	(37461993)	+	AluJb	SINE/Alu	216	290	(12)	2374341
12218	15.8	5.4	4.3	chr21	9355449	9356047	(37353936)	C	Tigger1	DNA/TcMar-Tigger	(245)	2173	1633	2374457
1850	13.3	3.4	1.1	chr21	9356048	9356332	(37353651)	C	AluSg7	SINE/Alu	(17)	292	1	2374459
12218	15.8	5.4	4.3	chr21	9356333	9357189	(37352794)	C	Tigger1	DNA/TcMar-Tigger	(786)	1632	757	2374457
1562	29.8	5.6	6.5	chr21	9817901	9819192	(36890791)	C	SST1	Satellite/centr	(1)	1562	284	2374896
20	28.0	1.7	0.0	chr21	9819212	9819271	(36890712)	+	GA-rich	Low_complexity	1	61	(0)	2374897
1996	29.3	5.0	5.8	chr21	9819321	9820600	(36889383)	C	SST1	Satellite/centr	(11)	1552	284	2374899
1750	28.6	6.0	7.2	chr21	9822132	9823427	(36886556)	C	SST1	Satellite/centr	(1)	1562	284	2374905
23	25.6	1.7	0.0	chr21	9823445	9823504	(36886479)	+	GA-rich	Low_complexity	1	61	(0)	2374906
23	9.8	0.0	0.0	chr21	9823504	9823536	(36886447)	+	(AC)n	Simple_repeat	1	33	(0)	2374907
1930	29.2	5.4	6.1	chr21	9823541	9824851	(36885132)	C	SST1	Satellite/centr	(1)	1562	262	2374908
1523	28.6	6.2	6.9	chr21	9836200	9837509	(36872474)	C	SST1	Satellite/centr	(1)	1562	262	2374935
3733	5.1	0.8	0.0	chr21	10269869	10270342	(36439641)	+	HSATI	Satellite	90	567	(10)	2375347
1732	14.4	0.0	5.1	chr21	10270343	10270634	(36439349)	+	AluSc8	SINE/Alu	13	289	(22)	2375348
471	27.5	6.0	1.2	chr21	10330456	10330628	(36379355)	C	ERVL-E-int	LTR/ERVL	(648)	5019	4838	2375365
578	24.0	0.3	10.2	chr21	13985941	13987840	(32722143)	+	(TGCCC)n	Simple_repeat	2	1711	(0)	2377218
935	15.3	4.7	5.6	chr21	13987854	13988068	(32721915)	C	L1MB7	LINE/L1	(87)	6097	5885	2377219
782	26.1	7.4	1.0	chr21	14056396	14059341	(32650642)	+	G-rich	Low_complexity	642	3770	(0)	2377303
2604	19.5	11.6	0.8	chr21	15434025	15434709	(31275274)	C	LTR48	LTR/ERV1	(45)	742	11	2379121
2883	19.5	7.6	3.4	chr21	15755690	15756424	(30953559)	C	LTR48	LTR/ERV1	(45)	742	1	2379589
2686	8.8	0.3	1.1	chr21	32874123	32874480	(13835503)	C	THE1A	LTR/ERVL-MaLR	(0)	355	1	2403916
11754	9.0	1.2	1.1	chr21	32874481	32876058	(13833925)	C	THE1A-int	LTR/ERVL-MaLR	(0)	1580	1	2403916
15	19.3	6.4	0.0	chr21	33588418	33588464	(13121519)	+	(GCC)n	Simple_repeat	1	50	(0)	2405243
20	26.4	2.5	2.4	chr21	33588685	33588764	(13121219)	+	(CCCCCG)n	Simple_repeat	1	82	(0)	2405244
1478	22.3	12.1	8.2	chr21	36990585	36991247	(9718736)	C	MER21C	LTR/ERVL	(130)	808	18	2410806
1861	14.9	5.7	2.2	chr21	36991254	36991353	(9718630)	+	L1MC3	LINE/L1	7345	7454	(331)	2410807
1951	18.0	5.2	4.7	chr21	36991354	36991796	(9718187)	+	MER65A	LTR/ERV1	1	445	(0)	2410808
2130	11.9	1.3	0.0	chr21	37579027	37579320	(9130663)	C	AluSc	SINE/Alu	(10)	299	2	2411823
1274	28.2	4.6	5.9	chr21	37579321	37579542	(9130441)	C	L1MEf	LINE/L1	(5480)	1557	1119	2411822
2634	25.4	3.6	4.2	chr21	40719129	40719892	(5990091)	+	L1ME3A	LINE/L1	5333	6086	(87)	2416435
205	33.1	7.4	4.1	chr21	40719935	40720129	(5989854)	C	L2c	LINE/L2	(1201)	2218	2017	2416431
13369	3.5	1.6	0.0	chr21	46698115	46699841	(10142)	+	TAR1	Satellite/telo	314	2069	(42)	2424293
134	2.9	0.7	0.7	chr21	46699842	46699983	(10000)	+	(AGGGTT)n	Simple_repeat	1	143	(0)	2424294
3076	15.8	1.1	0.9	chr22	10721335	10730387	(40088081)	+	(TCCATTCCAT)n	Simple_repeat	1	9151	(0)	2424547
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
194	23.1	0.0	1.9	chr22	11817844	11817896	(39000572)	C	MER5A	DNA/hAT-Charlie	(20)	169	118	2425392
590	21.9	0.2	0.0	chr22	11818875	11819136	(38999332)	+	ACRO1	Satellite/acro	1	262	(0)	2425395
2301	14.0	7.0	0.5	chr22	11897054	11897465	(38921003)	C	MER61C	LTR/ERV1	(0)	428	4	2425508
1124	22.8	3.2	0.8	chr22	11900617	11900862	(38917606)	C	AluJr	SINE/Alu	(48)	264	13	2425511
3058	20.8	2.7	1.3	chr22	11900876	11902001	(38916467)	C	L1MA5	LINE/L1	(354)	5946	4805	2425510
41	8.0	0.0	0.0	chr22	12173926	12173978	(38644490)	+	(GT)n	Simple_repeat	1	53	(0)	2425781
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
1974	15.9	0.3	1.0	chr22	12869703	12870016	(37948452)	C	AluSz6	SINE/Alu	(0)	312	1	2426154
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
1759	12.3	0.4	5.8	chr22	18730463	18730754	(32087714)	+	AluSc8	SINE/Alu	13	288	(23)	2430924
1159	17.2	3.8	2.8	chr22	18730755	18733615	(32084853)	+	(TTATA)n	Simple_repeat	1	2969	(0)	2430925
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
27	32.1	6.8	0.5	chr22	22290941	22291117	(28527351)	+	(CCTAGC)n	Simple_repeat	1	189	(0)	2436723
822	25.9	7.2	0.8	chr22	22291133	22294678	(28523790)	+	G-rich	Low_complexity	1	3802	(0)	2436724
12	21.6	0.0	4.9	chr22	22576440	22576480	(28241988)	+	G-rich	Low_complexity	1	41	(0)	2437106
512	34.1	0.9	4.4	chr22	26511938	26512164	(24306304)	C	MIRb	SINE/MIR	(8)	260	42	2444473
3503	28.8	12.2	5.5	chr22	27224953	27225780	(23592688)	C	L1MC5a	LINE/L1	(1143)	1634	1415	2446244
298	34.0	3.0	1.7	chr22	27255364	27255543	(23562925)	C	MIR3	SINE/MIR	(71)	197	3	2446305
418	31.3	17.2	2.9	chr22	27255544	27255907	(23562561)	+	L2c	LINE/L2	2954	3387	(0)	2446306
13	23.5	3.3	4.8	chr22	29154521	29154580	(21663888)	+	(CCG)n	Simple_repeat	1	62	(0)	2449982
701	16.4	8.3	0.0	chr22	29154717	29154838	(21663630)	+	FLAM_A	SINE/Alu	1	133	(9)	2449983
273	28.3	12.1	4.8	chr22	32621509	32621653	(18196815)	+	MER91A	DNA/hAT-Tip100	4	160	(36)	2457362
2583	9.9	0.0	0.0	chr22	33122346	33122658	(17695810)	C	AluSq2	SINE/Alu	(0)	313	1	2458441
6832	15.2	4.5	2.9	chr22	33122659	33123609	(17694859)	C	MER66-int	LTR/ERV1	(4512)	2164	1210	2458440
492	31.9	2.7	0.6	chr22	34825212	34825391	(15993077)	+	L3	LINE/CR1	3706	3889	(210)	2461685
15	13.9	2.3	4.5	chr22	34825657	34825699	(15992769)	+	(CATCCCT)n	Simple_repeat	1	44	(0)	2461686
870	19.4	10.8	3.1	chr22	35675036	35675261	(15143207)	C	LTR48	LTR/ERV1	(442)	345	100	2463553
1587	14.2	15.7	7.1	chr22	35675262	35675521	(15142947)	+	MER4B	LTR/ERV1	1	287	(323)	2463554
1412	27.4	8.0	3.8	chr22	36052812	36053444	(14765024)	C	HAL1	LINE/L1	(685)	1822	1161	2464243
184	10.7	2.9	7.0	chr22	36053445	36053887	(14764581)	+	(CCCTT)n	Simple_repeat	1	456	(0)	2464244
2501	26.0	7.8	7.1	chr22	36053891	36053907	(14764561)	C	HAL1	LINE/L1	(1305)	1202	1188	2464245
880	16.3	0.0	0.0	chr22	36053908	36054036	(14764432)	C	FLAM_C	SINE/Alu	(11)	132	4	2464246
202	37.4	7.7	1.6	chr22	36409101	36409282	(14409186)	C	L2c	LINE/L2	(151)	3236	3043	2464953
18	24.8	1.9	1.8	chr22	36409458	36409516	(14408952)	+	(TA)n	Simple_repeat	1	59	(0)	2464954
16	0.0	0.0	0.0	chr22	37746216	37746232	(13072236)	+	(A)n	Simple_repeat	1	17	(0)	2467968
27	8.9	1.9	3.8	chr22	37746284	37746335	(13072133)	+	(CGG)n	Simple_repeat	1	53	(0)	2467969
425	21.1	6.0	0.9	chr22	38718768	38718877	(12099591)	C	L1ME4b	LINE/L1	(108)	784	669	2470162
411	20.2	1.2	0.0	chr22	38718867	38718971	(12099497)	C	L1ME3Cz	LINE/L1	(18)	979	886	2470163
1226	22.2	4.2	5.3	chr22	40070720	40071057	(10747411)	C	MER46C	DNA/TcMar-Tigger	(1)	337	4	2472829
215	23.8	4.9	4.2	chr22	41285725	41285809	(9532659)	+	MIRc	SINE/MIR	69	150	(80)	2475552
704	5.2	1.1	2.0	chr3	10001	10916	(198284643)	+	(CTAACC)n	Simple_repeat	1	926	(0)	2492347
46	0.0	0.0	0.0	chr3	10917	10983	(198284576)	+	(CGACCC)n	Simple_repeat	1	67	(0)	2492348
14	16.2	0.0	0.0	chr3	19947408	19947435	(178348124)	+	(CGC)n	Simple_repeat	1	28	(0)	2525351
11029	12.6	1.0	1.1	chr3	22596409	22598040	(175697519)	+	MSTA-int	LTR/ERVL-MaLR	1	1631	(0)	2528957
49	27.8	0.0	0.0	chr3	29281115	29281236	(169014323)	+	(TTTT)n	Simple_repeat	1	122	(0)	2538965
14	5.0	0.0	0.0	chr3	39153565	39153585	(159141974)	+	(CGG)n	Simple_repeat	1	21	(0)	2554043
234	25.5	3.8	3.8	chr3	39153892	39153997	(159141562)	C	MIR3	SINE/MIR	(40)	168	63	2554044
3357	18.5	6.5	3.5	chr3	39403782	39404447	(158891112)	+	LTR48	LTR/ERV1	1	702	(85)	2554468
1718	19.4	1.0	1.0	chr3	41601912	41602204	(156693355)	+	AluJr4	SINE/Alu	1	293	(19)	2557689
42	29.7	7.9	1.7	chr3	41602207	41602473	(156693086)	+	GA-rich	Low_complexity	1	288	(0)	2557690
539	22.8	3.2	0.0	chr3	41602486	41602634	(156692925)	+	L1MD3	LINE/L1	7842	7995	(0)	2557691
1957	31.7	7.2	8.8	chr3	46834473	46835025	(151460534)	C	ERVL-E-int	LTR/ERVL	(3977)	1690	1138	2565995
2071	12.4	0.0	0.3	chr3	48099492	48099808	(150195751)	C	AluSz	SINE/Alu	(0)	312	1	2568666
2956	12.9	4.3	6.2	chr3	48099809	48100134	(150195425)	+	MER34C2	LTR/ERV1	243	552	(3)	2568665
16	10.0	0.0	5.6	chr3	50205204	50205239	(148090320)	+	(GGCGG)n	Simple_repeat	1	36	(0)	2572765
27	22.5	0.0	0.0	chr3	50617072	50617128	(147678431)	+	G-rich	Low_complexity	1	57	(0)	2573289
19	13.0	0.0	0.0	chr3	51538798	51538831	(146756728)	+	(CCG)n	Simple_repeat	1	34	(0)	2574563
14	17.3	5.1	0.0	chr3	51538872	51538910	(146756649)	+	(CGGCG)n	Simple_repeat	1	41	(0)	2574564
235	29.1	7.1	3.3	chr3	53881582	53881702	(144413857)	C	MIRb	SINE/MIR	(25)	243	118	2578191
19	8.9	3.5	8.5	chr3	53882033	53882089	(144413470)	+	(CTTCTC)n	Simple_repeat	1	59	(0)	2578192
12	13.0	0.0	9.8	chr3	53882243	53882283	(144413276)	+	G-rich	Low_complexity	1	41	(0)	2578193
1561	20.8	2.7	0.7	chr3	56126494	56126781	(142168778)	+	AluJr	SINE/Alu	19	312	(0)	2581546
4876	15.5	8.2	2.6	chr3	56126782	56127445	(142168114)	+	L1M2	LINE/L1	4018	4764	(1379)	2581545
1128	27.3	2.0	3.9	chr3	65259526	65259880	(133035679)	C	Zaphod	DNA/hAT-Tip100	(3584)	447	100	2597147
36	0.0	0.0	0.0	chr3	65259885	65259915	(133035644)	+	(GT)n	Simple_repeat	1	31	(0)	2597149
125	5.7	0.0	1.7	chr3	65259978	65260149	(133035410)	+	(GGAAG)n	Simple_repeat	1	172	(0)	2597150
308	15.5	3.4	4.9	chr3	70211150	70211926	(128083633)	+	(TTCCT)n	Simple_repeat	1	803	(0)	2605484
2214	18.0	19.1	3.5	chr3	74083813	74084470	(124211089)	C	LTR48	LTR/ERV1	(2)	785	1	2612260
3009	18.5	10.5	1.4	chr3	77478858	77479580	(120815979)	C	LTR48	LTR/ERV1	(42)	745	1	2616933
2621	20.2	8.8	2.9	chr3	78981639	78981788	(119313771)	+	LTR48	LTR/ERV1	6	164	(623)	2618885
44	6.2	0.0	0.0	chr3	78981789	78981839	(119313720)	+	(AC)n	Simple_repeat	1	51	(0)	2618886
2621	20.2	8.8	2.9	chr3	78981840	78982422	(119313137)	+	LTR48	LTR/ERV1	165	787	(0)	2618885
9088	14.1	4.6	0.3	chr3	80667683	80669191	(117626368)	+	THE1C-int	LTR/ERVL-MaLR	1	1576	(4)	2621057
821	18.9	7.3	0.0	chr3	100260304	100260494	(98035065)	+	MER115	DNA/hAT-Tip100	483	688	(5)	2641429
2006	18.6	8.8	3.2	chr3	109440214	109440681	(88854878)	C	MLT1D	LTR/ERVL-MaLR	(8)	497	1	2653946
12	24.4	3.2	4.6	chr3	115784294	115784356	(82511203)	+	G-rich	Low_complexity	1	65	(0)	2662585
23	28.4	2.0	3.0	chr3	115784357	115784388	(82511171)	+	(GCGG)n	Simple_repeat	5	101	(0)	2662586
2492	6.9	1.0	0.0	chr3	116220873	116221175	(82074384)	+	AluY	SINE/Alu	1	306	(5)	2663223
386	35.5	6.4	1.4	chr3	116221207	116221429	(82074130)	C	MIRc	SINE/MIR	(32)	236	2	2663224
247	28.0	4.5	14.4	chr3	116221430	116221545	(82074014)	+	MIR3	SINE/MIR	69	171	(37)	2663225
3154	15.3	3.2	3.9	chr3	123066340	123066597	(75228962)	C	L1MB5	LINE/L1	(346)	5828	5569	2673091
432	25.3	13.8	3.0	chr3	123066692	123066858	(75228701)	+	MIRb	SINE/MIR	67	254	(14)	2673093
198	28.1	9.4	6.8	chr3	123489422	123489524	(74806035)	+	AmnSINE2	SINE/tRNA-Deu	150	255	(103)	2673801
536	22.8	17.3	5.9	chr3	126330005	126330359	(71965200)	+	MLT1H2	LTR/ERVL-MaLR	86	489	(0)	2678423
319	29.9	5.6	3.7	chr3	126330382	126330572	(71964987)	C	L1MD	LINE/L1	(1825)	4321	4127	2678424
343	30.0	5.0	8.1	chr3	126330705	126330889	(71964670)	C	L1M2	LINE/L1	(1087)	5056	4878	2678425
11640	9.5	0.9	0.8	chr3	128750562	128751769	(69543790)	+	THE1B-int	LTR/ERVL-MaLR	371	1580	(0)	2682390
2212	11.5	4.7	2.5	chr3	128751770	128752125	(69543434)	+	THE1B	LTR/ERVL-MaLR	1	364	(0)	2682390
27	21.3	0.0	2.8	chr3	130903601	130903700	(67391859)	+	(CTTTCCC)n	Simple_repeat	1	97	(0)	2686161
40	0.0	0.0	0.0	chr3	130903701	130903737	(67391822)	+	(CCTTT)n	Simple_repeat	1	37	(0)	2686162
463	30.4	9.8	7.7	chr3	133406259	133406410	(64889149)	+	MamTip3	DNA/hAT-Tip100	222	402	(98)	2689842
422	26.2	4.6	7.0	chr3	133406504	133406679	(64888880)	+	MIRb	SINE/MIR	15	188	(42)	2689844
528	29.0	8.7	1.0	chr3	141052264	141052465	(57243094)	+	MIR	SINE/MIR	44	262	(0)	2701696
2295	13.4	0.0	0.0	chr3	142554954	142555266	(55740293)	+	AluSq2	SINE/Alu	1	313	(0)	2704297
11	21.1	2.5	2.4	chr3	143644517	143644556	(54651003)	+	A-rich	Low_complexity	1	41	(0)	2705952
623	26.1	8.5	1.4	chr3	150251278	150251495	(48044064)	C	LTR33	LTR/ERVL	(135)	380	146	2714944
1749	15.9	10.6	4.5	chr3	159943716	159944194	(38351365)	C	LTR48	LTR/ERV1	(60)	727	217	2728996
1385	22.5	15.2	3.8	chr3	167671886	167672503	(30623056)	+	LTR48	LTR/ERV1	1	565	(30)	2739005
231	25.9	12.0	0.7	chr4	1399029	1399168	(188815387)	C	L2	LINE/L2	(1449)	1970	1813	2790173
12	6.8	5.4	7.7	chr4	7102393	7102429	(183112126)	+	GA-rich	Low_complexity	1	39	(0)	2799599
13	24.1	2.8	6.8	chr4	13544432	13544503	(176670052)	+	(GCG)n	Simple_repeat	1	74	(0)	2809468
293	32.8	2.3	1.5	chr4	17269139	17269268	(172945287)	+	MIRb	SINE/MIR	14	144	(124)	2815857
457	34.7	7.5	6.9	chr4	17269481	17270172	(172944383)	+	L2c	LINE/L2	2658	3370	(17)	2815858
314	26.9	12.3	7.6	chr4	17809358	17809619	(172404936)	+	L1ME3D	LINE/L1	5867	6142	(100)	2816975
2566	14.7	8.3	1.7	chr4	17809628	17810145	(172404410)	C	MER34C2	LTR/ERV1	(0)	555	1	2816976
2877	19.0	11.1	3.0	chr4	26264831	26265246	(163949309)	C	LTR48	LTR/ERV1	(0)	787	350	2830723
2020	12.4	4.6	0.0	chr4	26265247	26265537	(163949018)	+	AluSx1	SINE/Alu	1	305	(7)	2830724
863	17.6	1.2	0.2	chr4	49090455	49091234	(141123321)	+	ALR/Alpha	Satellite/centr	1	788	(0)	2864886
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
7847	20.4	6.1	2.5	chr4	49268140	49270555	(140944000)	+	L1M4	LINE/L1	3095	5610	(570)	2865041
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
1094	12.9	0.2	0.0	chr4	49322499	49324803	(140889752)	+	ACRO1	Satellite/acro	1	2308	(0)	2865130
2364	19.6	5.0	4.4	chr4	49493900	49494948	(140719607)	+	L1MB8	LINE/L1	4777	5836	(342)	2865154
2241	13.0	7.3	0.5	chr4	49494958	49495361	(140719194)	+	MER61C	LTR/ERV1	11	428	(0)	2865155
765	23.2	4.1	11.8	chr4	49510094	49510415	(140704140)	C	L1MB8	LINE/L1	(43)	6135	5840	2865174
69	6.2	0.0	0.0	chr4	49510486	49510569	(140703986)	+	(TCCT)n	Simple_repeat	1	84	(0)	2865175
3155	12.4	0.6	0.0	chr4	49586304	49586801	(140627754)	+	L1P3	LINE/L1	4555	5055	(1091)	2865291
201	29.8	5.8	9.0	chr4	53555330	53555595	(136658960)	+	L2c	LINE/L2	3063	3319	(68)	2867869
6318	28.1	5.7	2.1	chr4	69122272	69123571	(121090984)	+	L1M4b	LINE/L1	93	1464	(5403)	2889073
14	23.2	3.9	1.9	chr4	72569185	72569236	(117645319)	+	(AGCG)n	Simple_repeat	1	54	(0)	2893668
22	17.0	0.0	6.6	chr4	72569253	72569313	(117645242)	+	GA-rich	Low_complexity	1	61	(0)	2893669
13	19.2	6.1	1.9	chr4	72569320	72569368	(117645187)	+	(GCTGCTG)n	Simple_repeat	1	52	(0)	2893670
16	13.2	5.2	6.6	chr4	74173022	74173079	(116041476)	+	(TTCTCT)n	Simple_repeat	1	61	(0)	2895808
49	31.6	0.0	0.0	chr4	74413358	74413501	(115801054)	+	(ATG)n	Simple_repeat	1	144	(0)	2896159
146	3.6	1.7	1.7	chr4	74413544	74413721	(115800834)	+	(TTGCC)n	Simple_repeat	1	181	(0)	2896160
763	24.5	11.8	3.3	chr4	76886765	76887064	(113327491)	C	MLT1K	LTR/ERVL-MaLR	(114)	481	153	2900024
311	30.1	4.3	1.0	chr4	76887370	76887497	(113327058)	C	L2b	LINE/L2	(25)	3401	3240	2900025
241	33.0	9.3	6.6	chr4	77140995	77141192	(113073363)	+	L2c	LINE/L2	3166	3369	(18)	2900444
2335	14.1	0.0	0.6	chr4	77141605	77141917	(113072638)	+	AluSx1	SINE/Alu	1	311	(1)	2900445
985	25.6	16.2	4.7	chr4	77925995	77926416	(112288139)	+	HAL1	LINE/L1	177	656	(1851)	2901433
2530	16.1	8.3	0.2	chr4	84594102	84594611	(105619944)	C	MER34C2	LTR/ERV1	(0)	555	1	2911329
415	24.5	4.7	12.4	chr4	86878110	86878342	(103336213)	+	MER102c	DNA/hAT-Charlie	116	329	(2)	2914511
653	31.1	8.6	4.7	chr4	86878406	86878749	(103335806)	+	L1M3d	LINE/L1	1	359	(5532)	2914512
15	23.7	9.2	2.5	chr4	88007541	88007649	(102206906)	+	(GGCGGACG)n	Simple_repeat	1	119	(0)	2916370
3252	17.1	7.7	2.5	chr4	88582345	88583074	(101631481)	+	LTR48	LTR/ERV1	1	771	(16)	2917412
3375	17.0	10.3	1.7	chr4	89054430	89055147	(101159408)	+	LTR48	LTR/ERV1	1	787	(0)	2918065
1483	18.9	19.1	2.7	chr4	89627662	89628289	(100586266)	+	LTR48	LTR/ERV1	1	722	(65)	2918905
11421	9.9	0.6	0.6	chr4	89849631	89851209	(100363346)	C	THE1B-int	LTR/ERVL-MaLR	(0)	1580	1	2919213
1830	17.2	0.0	2.6	chr4	93167912	93168214	(97046341)	+	AluSz6	SINE/Alu	1	295	(17)	2923275
52	9.6	3.2	2.0	chr4	93168215	93168309	(97046246)	+	(GGAAA)n	Simple_repeat	1	98	(0)	2923276
306	31.4	9.9	4.5	chr4	93448442	93448774	(96765781)	+	L1MC4	LINE/L1	2712	3064	(3150)	2923661
149	0.7	0.0	4.7	chr4	93448784	93448953	(96765602)	+	(CCCTT)n	Simple_repeat	1	170	(0)	2923662
26	28.0	2.6	3.5	chr4	93448954	93449066	(96765489)	+	(TTCC)n	Simple_repeat	1	116	(0)	2923663
436	32.5	6.6	3.0	chr4	98996849	98997080	(91217475)	+	MIRc	SINE/MIR	4	244	(24)	2931110
31	17.6	3.3	5.3	chr4	105147970	105148053	(85066502)	+	(TC)n	Simple_repeat	1	83	(0)	2939091
30	3.5	0.0	0.0	chr4	105148054	105148083	(85066472)	+	(AC)n	Simple_repeat	1	30	(0)	2939092
708	36.9	9.9	2.2	chr4	105706538	105707033	(84507522)	+	L2	LINE/L2	2367	2902	(517)	2939885
191	24.5	10.2	1.9	chr4	105707343	105707396	(84507159)	+	L2a	LINE/L2	3270	3328	(59)	2939887
653	31.7	8.3	3.3	chr4	108649759	108650091	(81564464)	C	L2	LINE/L2	(704)	2715	2365	2943806
12	10.0	0.0	0.0	chr4	109815862	109815883	(80398672)	+	(GGAG)n	Simple_repeat	1	22	(0)	2945572
12	21.7	0.0	0.0	chr4	114598686	114598717	(75615838)	+	G-rich	Low_complexity	1	32	(0)	2952251
2375	12.5	11.9	0.8	chr4	123373520	123373898	(66840657)	+	MSTA	LTR/ERVL-MaLR	1	427	(1)	2963869
1557	24.9	6.6	7.3	chr4	127732799	127733263	(62481292)	+	MER20B	DNA/hAT-Charlie	1	470	(313)	2969469
32	22.3	0.0	1.2	chr4	139084411	139084490	(51130065)	+	(CGGCGG)n	Simple_repeat	1	80	(0)	2983898
12	21.0	2.5	2.4	chr4	145481658	145481697	(44732858)	+	G-rich	Low_complexity	1	41	(0)	2992972
13	5.0	0.0	4.3	chr4	145481722	145481744	(44732811)	+	(GCG)n	Simple_repeat	1	23	(0)	2992973
15	13.9	0.0	2.9	chr4	146648247	146648280	(43566275)	+	(CCCCT)n	Simple_repeat	1	34	(0)	2994612
332	35.2	7.6	1.4	chr4	147709846	147709992	(42504563)	+	MamGypLTR2c	LTR/Gypsy	203	359	(709)	2996083
2717	7.9	0.3	0.6	chr4	148636399	148636754	(41577801)	C	THE1A	LTR/ERVL-MaLR	(0)	355	1	2997382
10977	10.5	2.6	0.1	chr4	148636755	148638295	(41576260)	C	THE1A-int	LTR/ERVL-MaLR	(0)	1580	1	2997382
370	4.7	1.1	3.5	chr4	150805169	150805712	(39408843)	+	(AAAGG)n	Simple_repeat	1	550	(0)	3000282
344	32.8	12.4	1.2	chr4	150805713	150805968	(39408587)	C	L3	LINE/CR1	(376)	3723	3435	3000283
837	16.2	2.4	0.0	chr4	159748781	159748940	(30465615)	C	L1MA9	LINE/L1	(940)	6619	6456	3013308
58	38.5	3.0	3.6	chr4	159748960	159749366	(30465189)	+	(TCTTT)n	Simple_repeat	1	419	(0)	3013312
637	24.6	0.0	0.0	chr4	159749376	159749493	(30465062)	C	FLAM_A	SINE/Alu	(21)	121	4	3013313
304	24.2	4.8	4.8	chr4	174454055	174454180	(15760375)	C	MIR	SINE/MIR	(0)	262	137	3032982
14	21.3	7.4	0.0	chr4	183797780	183797833	(6416722)	+	(GGCCC)n	Simple_repeat	1	58	(0)	3045634
390	14.4	6.2	2.0	chr4	184219631	184220549	(5994006)	+	G-rich	Low_complexity	1	976	(0)	3046203
197	25.8	3.7	5.0	chr4	184676288	184677118	(5537437)	+	(TTCCT)n	Simple_repeat	1	820	(0)	3046994
700	15.0	14.4	0.0	chr4	184677148	184677260	(5537295)	C	AluJo	SINE/Alu	(179)	133	2	3046995
2397	23.1	3.4	4.0	chr4	184677265	184677890	(5536665)	C	L1ME3A	LINE/L1	(1126)	5020	4399	3046990
398	23.5	0.7	2.2	chr4	190022652	190022790	(191765)	+	LSAU	Satellite	2	138	(360)	3054526
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
2125	0.2	0.0	0.3	chr5	10001	11835	(181526424)	+	(TAACCC)n	Simple_repeat	1	1835	(0)	3054965
29	2.6	0.0	2.4	chr5	11838	11879	(181526380)	+	(GACCCC)n	Simple_repeat	1	42	(0)	3054966
7973	10.4	3.5	1.2	chr5	11943	13334	(181524925)	C	TAR1	Satellite/telo	(43)	2068	644	3054967
17	29.7	0.0	2.9	chr5	53889	53957	(181484302)	+	G-rich	Low_complexity	1	69	(0)	3055018
522	28.3	7.6	5.6	chr5	6858436	6859034	(174679225)	+	LTR16D	LTR/ERVL	24	674	(1)	3062405
290	5.4	3.6	0.2	chr5	9353018	9353428	(172184831)	+	(GAAAG)n	Simple_repeat	1	426	(0)	3065407
210	28.2	10.3	7.1	chr5	31320518	31320658	(150217601)	+	L2a	LINE/L2	2731	2876	(543)	3094757
12	5.5	0.0	0.0	chr5	32174289	32174307	(149363952)	+	(GGC)n	Simple_repeat	1	19	(0)	3096324
1581	15.7	4.0	5.7	chr5	34182319	34182469	(147355790)	+	AluJo	SINE/Alu	126	275	(37)	3099474
53	0.0	2.0	0.0	chr5	34182475	34182525	(147355734)	+	(AAAT)n	Simple_repeat	1	52	(0)	3099476
27	19.1	4.7	5.4	chr5	37371280	37371385	(144166874)	+	G-rich	Low_complexity	1	111	(0)	3104376
312	17.4	12.2	0.0	chr5	38133015	38133100	(143405159)	+	L1ME4a	LINE/L1	6025	6122	(2)	3105632
575	20.3	0.8	10.9	chr5	38133381	38133441	(143404818)	+	MER45A	DNA/hAT-Tip100	51	112	(66)	3105633
2259	12.1	1.3	0.7	chr5	38133442	38133738	(143404521)	C	AluSq2	SINE/Alu	(14)	299	1	3105634
14	20.7	2.6	0.0	chr5	52989211	52989249	(128549010)	+	G-rich	Low_complexity	1	40	(0)	3119683
10239	10.4	7.5	0.1	chr5	68210207	68211669	(113326590)	C	THE1B-int	LTR/ERVL-MaLR	(0)	1580	1	3141930
13	15.4	5.6	0.0	chr5	68215681	68215716	(113322543)	+	G-rich	Low_complexity	1	38	(0)	3141939
382	28.3	5.5	1.7	chr5	69189834	69190009	(112348250)	+	MIRb	SINE/MIR	45	227	(41)	3143460
2059	19.8	15.5	3.2	chr5	74308971	74309612	(107228647)	C	LTR48	LTR/ERV1	(0)	787	1	3151790
11	24.6	0.0	2.5	chr5	76818919	76818958	(104719301)	+	(GCGGAGG)n	Simple_repeat	1	40	(0)	3155688
14	20.1	2.0	4.0	chr5	76818945	76818993	(104719266)	+	G-rich	Low_complexity	1	50	(0)	3155689
30	11.2	0.0	6.2	chr5	80256092	80256156	(101282103)	+	(GCCCC)n	Simple_repeat	1	65	(0)	3161177
1626	18.9	4.8	3.4	chr5	82478422	82478627	(99059632)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	185	3164691
30	0.0	3.5	0.0	chr5	82478628	82478656	(99059603)	+	(GA)n	Simple_repeat	1	30	(0)	3164692
1626	18.9	4.8	3.4	chr5	82478657	82478800	(99059459)	C	MLT1B	LTR/ERVL-MaLR	(206)	184	35	3164691
20	32.6	3.2	1.0	chr5	83473435	83473527	(98064732)	+	(TC)n	Simple_repeat	1	96	(0)	3166014
12	4.7	4.5	0.0	chr5	83473608	83473629	(98064630)	+	(AGGG)n	Simple_repeat	1	23	(0)	3166015
452	23.5	1.9	0.0	chr5	92571054	92571155	(88967104)	C	MER99	DNA/hAT?	(727)	104	1	3177627
212	37.5	3.3	0.0	chr5	92571167	92571254	(88967005)	C	MamRTE1	LINE/RTE-BovB	(500)	3312	3222	3177629
1086	16.0	0.0	0.0	chr5	93873146	93873301	(87664958)	+	AluJo	SINE/Alu	137	292	(20)	3179173
97	5.6	2.4	4.7	chr5	93873310	93873479	(87664780)	+	(GGAAA)n	Simple_repeat	1	166	(0)	3179174
14	21.5	7.6	1.4	chr5	98773829	98773866	(82764393)	+	(CGCTGCG)n	Simple_repeat	1	80	(25)	3185540
14	17.2	3.9	5.7	chr5	98773867	98773917	(82764342)	+	(GCT)n	Simple_repeat	1	53	(0)	3185541
14	21.5	7.6	1.4	chr5	98773918	98773927	(82764332)	+	(CGCTGCG)n	Simple_repeat	81	105	(0)	3185540
17	30.2	1.2	2.5	chr5	98773973	98774052	(82764207)	+	(GCCCGC)n	Simple_repeat	1	81	(0)	3185542
21	28.1	2.4	1.2	chr5	98774097	98774179	(82764080)	+	(CGCTGC)n	Simple_repeat	1	85	(0)	3185543
207	29.1	2.5	13.2	chr5	102988480	102988570	(78549689)	+	L2a	LINE/L2	3298	3417	(9)	3190831
79	8.5	6.8	2.3	chr5	102988590	102988750	(78549509)	+	GA-rich	Low_complexity	1	172	(0)	3190832
1675	12.5	0.9	0.4	chr5	106535533	106535764	(75002495)	C	AluSc	SINE/Alu	(27)	282	50	3195261
467	28.4	9.4	0.0	chr5	107076517	107076719	(74461540)	+	Charlie10	DNA/hAT-Charlie	1	225	(2597)	3195903
180	36.8	3.4	1.7	chr5	107076835	107077008	(74461251)	+	L2b	LINE/L2	2915	3091	(284)	3195901
3996	22.1	7.8	2.5	chr5	108372208	108373632	(73164627)	+	L1M4	LINE/L1	1704	3162	(3705)	3197536
1946	16.3	0.0	1.0	chr5	108373633	108373926	(73164333)	+	AluJb	SINE/Alu	1	291	(21)	3197539
11812	17.4	3.5	2.3	chr5	108809863	108811313	(72726946)	C	L1PA16	LINE/L1	(4975)	1878	714	3198169
1825	27.3	3.8	8.3	chr5	108811315	108811592	(72726667)	C	L1MEc	LINE/L1	(3272)	3047	2771	3198166
15	24.9	0.0	0.0	chr5	111758220	111758253	(69780006)	+	(CA)n	Simple_repeat	1	34	(0)	3201828
332	33.7	4.5	4.5	chr5	118628842	118629043	(62909216)	+	LTR81	LTR/Gypsy	93	294	(895)	3211079
16	30.3	0.0	1.6	chr5	123129911	123129972	(58408287)	+	(CTGC)n	Simple_repeat	1	62	(0)	3216958
193	13.7	1.5	4.0	chr5	123129947	123130340	(58407919)	+	(CCTTC)n	Simple_repeat	1	400	(0)	3216959
958	18.7	0.4	16.9	chr5	124177878	124178167	(57360092)	+	LTR49	LTR/ERV1	1	242	(353)	3218323
1355	18.6	9.5	2.0	chr5	124178172	124178583	(57359676)	+	LTR48	LTR/ERV1	345	727	(60)	3218324
2525	17.7	11.1	6.8	chr5	127256778	127257528	(54280731)	C	LTR48	LTR/ERV1	(0)	787	1	3222606
473	5.0	0.0	0.0	chr5	127257552	127257611	(54280648)	C	MER4D0	LTR/ERV1	(0)	872	813	3222607
514	8.9	4.8	0.0	chr5	127257612	127257690	(54280569)	C	MER4D0	LTR/ERV1	(19)	853	771	3222607
290	24.3	12.7	0.0	chr5	139775515	139775617	(41762642)	C	MIRb	SINE/MIR	(141)	127	10	3241497
15	29.0	3.2	0.0	chr5	141876360	141876422	(39661837)	+	(GCCGGC)n	Simple_repeat	1	65	(0)	3244777
19	19.9	3.9	0.0	chr5	149731600	149731651	(31806608)	+	G-rich	Low_complexity	1	54	(0)	3258411
700	22.5	11.7	1.1	chr5	151080245	151080483	(30457776)	+	MIR	SINE/MIR	5	262	(0)	3261108
33	21.1	3.1	5.3	chr5	151252744	151252870	(30285389)	+	(GCCCC)n	Simple_repeat	1	131	(0)	3261497
638	14.4	0.9	0.9	chr5	154181068	154181172	(27357087)	+	MER39	LTR/ERV1	1	105	(602)	3266593
2463	16.1	8.4	4.7	chr5	154181180	154181715	(27356544)	+	LTR48	LTR/ERV1	230	787	(0)	3266594
287	34.3	6.8	1.7	chr5	154686294	154686474	(26851785)	C	L2b	LINE/L2	(222)	3153	2963	3267783
716	22.5	12.5	2.8	chr5	154686481	154686710	(26851549)	+	MER102c	DNA/hAT-Charlie	70	301	(30)	3267784
13	16.9	0.0	8.5	chr5	157731251	157731297	(23806962)	+	GA-rich	Low_complexity	1	47	(0)	3273268
1950	13.4	7.1	0.6	chr5	157823764	157824079	(23714180)	+	MER1B	DNA/hAT-Charlie	2	339	(0)	3273400
140	33.4	3.8	2.7	chr5	158851355	158852093	(22686166)	+	A-rich	Low_complexity	1	767	(0)	3275207
22	18.0	2.6	6.2	chr5	173056577	173056654	(8481605)	+	G-rich	Low_complexity	1	80	(0)	3298842
23	22.7	3.1	5.0	chr5	173056875	173056970	(8481289)	+	G-rich	Low_complexity	1	99	(0)	3298843
1597	8.9	0.0	0.5	chr5	177707659	177707860	(3830399)	C	AluSx	SINE/Alu	(111)	201	1	3307893
923	23.1	9.7	1.0	chr5	178126530	178127102	(3411157)	+	MER34C2	LTR/ERV1	1	558	(13)	3308605
3661	16.8	9.8	4.3	chr5	178179579	178180372	(3357887)	C	MER21B	LTR/ERVL	(2)	866	24	3308729
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
15	8.8	5.0	4.8	chr5	181235419	181235458	(302801)	+	(CATTA)n	Simple_repeat	1	42	(0)	3313905
15	0.0	0.0	0.0	chr6	1597173	1597189	(169208790)	+	(AC)n	Simple_repeat	1	17	(0)	3316374
34	6.3	4.0	0.0	chr6	1641705	1641754	(169164225)	+	(TC)n	Simple_repeat	1	52	(0)	3316411
2499	16.0	2.4	3.2	chr6	2142248	2142718	(168663261)	+	MLT1C	LTR/ERVL-MaLR	1	467	(0)	3317002
198	32.3	4.4	0.0	chr6	2143040	2143104	(168662875)	+	L2b	LINE/L2	3241	3308	(67)	3317003
3146	17.5	11.6	2.1	chr6	4105833	4106538	(166699441)	C	LTR48	LTR/ERV1	(3)	784	3	3319975
3436	24.6	9.2	5.4	chr6	4106539	4106692	(166699287)	C	L1M5	LINE/L1	(1729)	4417	4250	3319972
21	17.7	0.0	0.0	chr6	4803734	4803771	(166002208)	+	(T)n	Simple_repeat	1	38	(0)	3321087
26	6.3	0.0	0.0	chr6	11596332	11596365	(159209614)	+	(T)n	Simple_repeat	1	34	(0)	3331447
2448	7.4	0.3	0.3	chr6	11596381	11596677	(159209302)	+	AluY	SINE/Alu	2	298	(13)	3331448
1422	17.5	11.8	7.9	chr6	23509442	23509832	(147296147)	+	MLT1A1	LTR/ERVL-MaLR	1	408	(0)	3350636
331	32.6	11.2	1.7	chr6	24996748	24996942	(145809037)	+	L2c	LINE/L2	3183	3373	(2)	3352909
5449	11.0	3.7	0.6	chr6	28335120	28335915	(142470064)	+	LTR25	LTR/ERV1	1	821	(23)	3358463
17	35.8	0.8	3.4	chr6	31475192	31475201	(139330778)	+	(AGTGTG)n	Simple_repeat	1	45	(73)	3363372
17	42.8	0.0	0.0	chr6	31475202	31475295	(139330684)	+	(TG)n	Simple_repeat	1	94	(0)	3363373
26	8.3	0.0	0.0	chr6	34115227	34115265	(136690714)	+	(TGTGTGCG)n	Simple_repeat	1	39	(0)	3367660
212	35.8	9.6	0.8	chr6	34115718	34115841	(136690138)	+	MIR3	SINE/MIR	8	143	(65)	3367661
411	4.7	5.3	0.2	chr6	34973831	34974430	(135831549)	+	(CCTTCC)n	Simple_repeat	1	632	(0)	3369554
330	17.5	1.7	0.0	chr6	34974431	34974487	(135831492)	C	AluJo	SINE/Alu	(13)	299	242	3369555
2010	17.4	14.5	5.7	chr6	38641734	38642191	(132163788)	+	MLT1D	LTR/ERVL-MaLR	1	505	(0)	3376687
662	27.5	12.2	5.9	chr6	38642192	38642220	(132163759)	+	LTR79	LTR/ERVL	407	435	(92)	3376686
780	33.3	4.8	1.6	chr6	38642314	38642759	(132163220)	C	L2	LINE/L2	(995)	2424	1964	3376685
2142	11.6	0.3	0.0	chr6	42050104	42050397	(128755582)	+	AluSz	SINE/Alu	6	300	(12)	3382426
3521	14.4	11.1	0.9	chr6	56715392	56716091	(114089888)	+	LTR48	LTR/ERV1	5	785	(2)	3404498
1577	28.6	6.4	2.8	chr6	64115341	64115884	(106690095)	+	L1M2a	LINE/L1	1930	2498	(5068)	3411501
1989	15.5	3.3	3.1	chr6	66207772	66208130	(104597849)	C	THE1B	LTR/ERVL-MaLR	(0)	364	5	3414000
10429	13.0	0.9	0.3	chr6	66208135	66209705	(104596274)	C	THE1B-int	LTR/ERVL-MaLR	(0)	1580	1	3414000
21511	15.5	1.8	1.4	chr6	71630546	71636779	(99169200)	C	L1MA5	LINE/L1	(1113)	6452	15	3420863
2688	13.2	0.7	3.4	chr6	71636784	71637366	(99168613)	C	L1M2	LINE/L1	(811)	5489	4917	3420864
18	10.8	0.0	0.0	chr6	79078201	79078230	(91727749)	+	(GGA)n	Simple_repeat	1	30	(0)	3430771
4019	20.6	4.1	2.8	chr6	90770356	90771204	(80034775)	C	MER21B	LTR/ERVL	(7)	861	2	3446839
323	25.4	0.0	0.0	chr6	95500960	95501030	(75304949)	+	L1M3b	LINE/L1	1660	1730	(5766)	3452559
2490	30.0	2.9	2.5	chr6	95501352	95501870	(75304109)	+	L1M3b	LINE/L1	2054	2566	(4930)	3452559
1288	19.1	9.8	6.5	chr6	104930795	104931369	(65874610)	+	LTR49	LTR/ERV1	2	768	(19)	3464673
2458	10.3	0.0	0.0	chr6	107310004	107310314	(63495665)	+	AluSc8	SINE/Alu	1	311	(0)	3468654
2255	17.8	6.4	2.8	chr6	107310315	107310858	(63495121)	+	LTR48	LTR/ERV1	223	787	(0)	3468655
940	23.7	9.2	0.6	chr6	107933387	107933656	(62872323)	+	L1MD3	LINE/L1	7334	7630	(412)	3469607
43	4.3	0.0	0.0	chr6	107933657	107933704	(62872275)	+	(CCTGCC)n	Simple_repeat	1	48	(0)	3469609
6085	3.0	0.4	35.0	chr6	107933705	107935786	(62870193)	+	SVA_D	Retroposon/SVA	8	1366	(20)	3469610
213	34.3	2.0	2.0	chr6	110755501	110755601	(60050378)	C	L2b	LINE/L2	(240)	3135	3035	3474237
897	35.9	5.3	5.0	chr6	111477271	111477944	(59328035)	C	L2b	LINE/L2	(39)	3336	2647	3475658
252	31.9	7.0	1.4	chr6	112844390	112844527	(57961452)	+	MIRb	SINE/MIR	20	167	(101)	3477641
774	33.1	12.6	2.2	chr6	112844526	112845214	(57960765)	C	L2a	LINE/L2	(6)	3420	2648	3477642
12017	12.4	5.7	2.5	chr6	119236728	119237363	(51568616)	+	Tigger1	DNA/TcMar-Tigger	1446	2071	(347)	3486334
3545	10.8	10.8	0.5	chr6	122438376	122438981	(48366998)	+	L1PA14	LINE/L1	1595	2270	(4419)	3490412
4102	17.8	8.9	1.3	chr6	122438982	122439818	(48366161)	+	MSTA-int	LTR/ERVL-MaLR	745	1651	(0)	3490411
2078	25.6	8.3	3.7	chr6	127350000	127351180	(43454799)	+	L1M2	LINE/L1	2211	3435	(4130)	3496767
3227	11.2	1.8	2.6	chr6	131053324	131053825	(39752154)	C	LTR3B_	LTR/ERVK	(0)	499	2	3501757
302	30.2	3.4	0.0	chr6	135055112	135055197	(35750782)	+	L2c	LINE/L2	3286	3374	(13)	3507874
1929	13.9	0.7	1.4	chr6	135055222	135055516	(35750463)	+	AluJo	SINE/Alu	1	293	(19)	3507875
194	36.2	0.0	1.4	chr6	135966854	135966923	(34839056)	C	L2b	LINE/L2	(1)	3374	3306	3509195
2230	12.5	0.0	0.7	chr6	143213489	143213816	(27592163)	C	AluSx1	SINE/Alu	(0)	312	1	3519542
34384	7.1	1.0	1.7	chr6	143869286	143872553	(26933426)	C	HERVL-int	LTR/ERVL	(964)	4690	1464	3520537
15	14.4	0.0	0.0	chr6	151240357	151240380	(19565599)	+	(T)n	Simple_repeat	1	24	(0)	3531640
143	24.6	3.3	1.8	chr6	152371571	152371999	(18433980)	+	GA-rich	Low_complexity	1	443	(0)	3533435
395	24.5	6.8	2.8	chr6	152418593	152418737	(18387242)	+	MER34A	LTR/ERV1	5	233	(554)	3533509
227	17.1	0.0	2.4	chr6	152418825	152418866	(18387113)	+	MER4D1	LTR/ERV1	491	531	(369)	3533510
1187	17.7	6.5	4.6	chr6	152418838	152419139	(18386840)	+	MER34C2	LTR/ERV1	243	550	(5)	3533511
2262	14.1	4.5	0.0	chr6	152846776	152847116	(17958863)	C	LTR18A	LTR/ERVL	(0)	357	1	3534104
22311	7.8	1.0	0.4	chr6	154172170	154178299	(16627680)	+	L1PA6	LINE/L1	5	6152	(2)	3535901
2157	25.0	7.0	0.0	chr6	159445196	159445739	(11360240)	+	MLT1G	LTR/ERVL-MaLR	4	588	(3)	3544080
2280	16.4	3.2	14.5	chr6	161526706	161527332	(9278647)	C	MER34C2	LTR/ERV1	(0)	555	2	3546828
15287	12.5	6.8	1.8	chr6	166994403	166995740	(3810239)	C	Tigger2	DNA/TcMar-Tigger	(152)	2566	1138	3553888
2144	12.5	2.2	0.0	chr6	166995741	166996045	(3809934)	C	AluSz6	SINE/Alu	(0)	312	1	3553890
213	32.0	2.3	4.6	chr6	168035740	168035870	(2770109)	+	MIRc	SINE/MIR	24	151	(117)	3555076
388	35.6	4.6	3.7	chr6	168614431	168615747	(2190232)	+	TAR1	Satellite/telo	1	1328	(552)	3555632
13	26.8	2.2	0.0	chr6	170584448	170584492	(221487)	+	(CCCG)n	Simple_repeat	1	46	(0)	3557615
2122	12.3	0.7	0.0	chr7	5119078	5119386	(154226587)	C	AluSx3	SINE/Alu	(0)	311	1	3566276
196	17.9	0.0	2.5	chr7	6695348	6695387	(152650586)	+	MER5B	DNA/hAT-Charlie	91	129	(49)	3569956
680	15.4	12.0	0.0	chr7	6695388	6695504	(152650469)	C	FLAM_C	SINE/Alu	(10)	133	1	3569957
269	23.7	1.3	0.0	chr7	12784226	12784301	(146561672)	+	HAL1ME	LINE/L1	2246	2322	(143)	3577843
1139	21.8	13.4	6.8	chr7	12784431	12784538	(146561435)	+	MLT1C	LTR/ERVL-MaLR	6	119	(348)	3577851
2542	6.7	0.0	0.0	chr7	12784539	12784836	(146561137)	+	AluY	SINE/Alu	1	298	(13)	3577852
15	26.5	0.0	0.0	chr7	15839418	15839451	(143506522)	+	(TT)n	Simple_repeat	1	34	(0)	3581764
9100	16.8	6.8	6.1	chr7	26797073	26799072	(132546901)	+	L1MA1	LINE/L1	1470	3495	(4070)	3597569
70	4.1	0.0	0.0	chr7	26799073	26799148	(132546825)	+	(GGCAA)n	Simple_repeat	1	76	(0)	3597570
22037	8.9	1.8	1.6	chr7	26799149	26799844	(132546129)	+	L1MA1	LINE/L1	3496	4187	(3378)	3597569
953	21.9	10.6	4.3	chr7	26955378	26955633	(132390340)	+	AluJb	SINE/Alu	3	276	(36)	3597786
75	0.0	0.0	0.0	chr7	26955664	26955730	(132390243)	+	(GGAAA)n	Simple_repeat	1	67	(0)	3597787
11654	18.2	7.4	2.6	chr7	30491381	30494024	(128851949)	C	L1MD1	LINE/L1	(3749)	2788	15	3603194
10210	18.7	4.0	5.2	chr7	31228455	31229345	(128116628)	C	L1MA4A	LINE/L1	(5293)	2273	1432	3604319
1726	19.2	1.8	1.5	chr7	31229346	31229683	(128116290)	C	L1MA4A	LINE/L1	(6498)	1068	730	3604319
216	36.3	12.1	1.9	chr7	35044032	35044343	(124301630)	+	L2	LINE/L2	2615	2962	(457)	3610102
696	28.2	12.3	0.7	chr7	35483505	35484032	(123861941)	C	L2a	LINE/L2	(2)	3424	2792	3610723
2155	14.2	0.0	1.9	chr7	52322919	52323235	(107022738)	C	AluSx1	SINE/Alu	(1)	311	1	3634761
31	19.5	3.3	3.2	chr7	52323704	52323794	(107022179)	+	(TTCTTT)n	Simple_repeat	1	94	(0)	3634762
563	14.6	11.1	0.0	chr7	52323795	52323890	(107022083)	C	U13_	snRNA	(0)	108	1	3634763
384	15.6	3.0	0.0	chr7	57489851	57489914	(101856059)	+	AluJo	SINE/Alu	225	290	(22)	3642536
94	10.7	1.1	1.1	chr7	57495470	57495644	(101850329)	+	(GGAAT)n	Simple_repeat	1	177	(0)	3642547
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
288	23.1	1.2	1.9	chr7	65488938	65489682	(93856291)	+	(ATTCC)n	Simple_repeat	1	754	(0)	3647900
351	16.1	3.1	0.0	chr7	65489683	65489744	(93856229)	C	AluYj4	SINE/Alu	(22)	289	226	3647901
84	11.5	0.0	0.0	chr7	65489745	65489886	(93856087)	+	(CCATT)n	Simple_repeat	1	142	(0)	3647902
383	14.3	3.1	0.0	chr7	65489887	65489949	(93856024)	C	AluYj4	SINE/Alu	(22)	289	225	3647903
85	11.3	0.7	0.6	chr7	65489965	65490119	(93855854)	+	(TTCCA)n	Simple_repeat	1	156	(0)	3647904
48	19.0	0.9	2.6	chr7	65490120	65490168	(93855805)	+	(CTCCA)n	Simple_repeat	1	48	(0)	3647905
4196	24.4	10.4	6.8	chr7	65903793	65904215	(93441758)	+	L1MEc	LINE/L1	1608	2040	(4360)	3648749
2068	13.9	1.7	0.3	chr7	65904216	65904503	(93441470)	C	AluSz	SINE/Alu	(19)	293	2	3648753
588	30.5	3.1	0.0	chr7	74079073	74079262	(85266711)	C	L2	LINE/L2	(867)	2552	2357	3666133
180	35.7	1.2	0.0	chr7	99099115	99099198	(60246775)	C	L2c	LINE/L2	(482)	2937	2853	3703954
17	0.0	0.0	0.0	chr7	99099210	99099228	(60246745)	+	(T)n	Simple_repeat	1	19	(0)	3703959
180	32.9	6.4	2.7	chr7	99099328	99099402	(60246571)	+	L2b	LINE/L2	3277	3354	(21)	3703960
1890	10.7	0.0	4.8	chr7	101321173	101321331	(58024642)	+	AluJo	SINE/Alu	134	290	(22)	3708503
12	23.8	3.9	1.9	chr7	103989866	103989916	(55356057)	+	(GGACGG)n	Simple_repeat	1	53	(0)	3713460
31	0.0	0.0	0.0	chr7	106101439	106101467	(53244506)	+	(C)n	Simple_repeat	1	29	(0)	3717099
35	25.8	2.4	5.8	chr7	106112281	106112449	(53233524)	+	G-rich	Low_complexity	1	173	(0)	3717117
193	29.4	6.3	7.0	chr7	106795660	106795787	(52550186)	C	MER5A	DNA/hAT-Charlie	(0)	189	63	3718092
269	13.9	2.3	0.0	chr7	106796053	106796095	(52549878)	C	MER41-int	LTR/ERV1	(7712)	44	1	3718093
4031	9.6	2.5	0.2	chr7	106796096	106796216	(52549757)	C	MER41A	LTR/ERV1	(0)	554	425	3718093
297	30.2	2.5	6.7	chr7	112130049	112130277	(47215696)	C	L2b	LINE/L2	(202)	3173	2953	3725329
6823	13.8	9.7	4.8	chr7	123417454	123418692	(35927281)	C	THE1C-int	LTR/ERVL-MaLR	(323)	1308	3	3740401
2076	18.6	2.6	1.8	chr7	124434482	124435114	(34910859)	C	MER72	LTR/ERV1	(40)	682	5	3741837
2852	19.8	2.5	5.4	chr7	124435160	124435550	(34910423)	C	MER4B-int	LTR/ERV1	(482)	6276	5900	3741838
2609	5.6	0.0	2.8	chr7	124478727	124479045	(34866928)	+	AluY	SINE/Alu	1	310	(1)	3741895
1603	17.7	1.1	2.8	chr7	139111661	139111942	(20234031)	+	AluJr	SINE/Alu	1	277	(35)	3764948
128	13.8	5.2	2.0	chr7	139111946	139112231	(20233742)	+	A-rich	Low_complexity	1	301	(0)	3764949
1009	24.6	7.9	4.0	chr7	139112301	139112651	(20233322)	C	ERV3-16A3_LTR	LTR/ERVL	(8)	414	49	3764950
1925	17.8	3.8	3.0	chr7	139124309	139124929	(20221044)	+	MER34C2	LTR/ERV1	5	555	(0)	3764971
19	24.8	2.1	6.1	chr7	140924604	140924699	(18421274)	+	(CGGCGC)n	Simple_repeat	1	98	(0)	3768435
32	2.3	4.3	2.1	chr7	140924758	140924803	(18421170)	+	(GGAGGC)n	Simple_repeat	1	48	(0)	3768436
187	29.1	7.2	1.9	chr7	149690746	149690850	(9655123)	+	MER5A	DNA/hAT-Charlie	56	166	(23)	3781035
627	4.1	0.0	0.0	chr7	149691180	149691252	(9654721)	C	tRNA-Cys-TGY	tRNA	(2)	73	1	3781036
13	21.7	0.0	2.6	chr7	150379505	150379543	(8966430)	+	(GGCCGG)n	Simple_repeat	1	39	(0)	3781973
13	25.7	1.5	5.9	chr7	150379630	150379696	(8966277)	+	GA-rich	Low_complexity	1	68	(0)	3781974
16	0.0	3.9	3.7	chr7	158151565	158151590	(1194383)	+	(GTG)n	Simple_repeat	1	27	(0)	3793030
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
12	17.6	4.5	4.3	chr7	158705144	158705187	(640786)	+	GA-rich	Low_complexity	1	46	(0)	3793569
281	6.6	1.4	4.3	chr8	205252	205736	(144932900)	+	(TAACCC)n	Simple_repeat	1	492	(0)	3794561
5249	18.3	11.3	2.1	chr8	205741	207331	(144931305)	C	TAR1	Satellite/telo	(43)	2068	314	3794562
2340	8.2	0.0	1.0	chr8	2661470	2661762	(142476874)	C	AluSq4	SINE/Alu	(21)	290	1	3797130
122	0.0	0.0	0.0	chr8	9283285	9283390	(135855246)	+	(TTCCT)n	Simple_repeat	1	106	(0)	3806239
22	9.2	0.0	0.0	chr8	9283393	9283427	(135855209)	+	(CCTT)n	Simple_repeat	1	35	(0)	3806240
562	26.5	10.5	0.9	chr8	9283459	9283690	(135854946)	C	L1ME4b	LINE/L1	(9)	883	627	3806241
2753	18.9	9.2	3.5	chr8	18478986	18479726	(126658910)	C	LTR48	LTR/ERV1	(0)	787	1	3819703
2033	19.2	8.6	3.7	chr8	23264147	23264806	(121873830)	+	LTR48	LTR/ERV1	90	729	(58)	3827627
2312	12.2	0.0	0.0	chr8	33606704	33607015	(111531621)	C	AluSx	SINE/Alu	(0)	312	1	3844883
2761	16.3	6.0	1.5	chr8	33607016	33607614	(111531022)	C	LTR48	LTR/ERV1	(157)	630	5	3844884
533	33.9	3.6	0.5	chr8	39929622	39929808	(105208828)	C	MIR3	SINE/MIR	(1)	207	15	3854525
12	11.6	3.5	0.0	chr8	39929930	39929946	(105208690)	+	GA-rich	Low_complexity	1	18	(0)	3854526
2453	5.7	0.3	1.4	chr8	39929947	39930243	(105208393)	+	AluY	SINE/Alu	1	294	(17)	3854527
3173	14.2	3.6	0.7	chr8	40869951	40870489	(104268147)	+	MER34C2	LTR/ERV1	1	555	(0)	3856043
2966	15.2	4.0	0.7	chr8	41820662	41821198	(103317438)	C	MER34C2	LTR/ERV1	(0)	555	1	3857647
228	32.2	11.0	0.6	chr8	53327709	53327852	(91810784)	+	MIR	SINE/MIR	103	254	(14)	3869369
281	35.3	12.3	4.2	chr8	53327861	53328144	(91810492)	C	HAL1ME	LINE/L1	(1622)	885	576	3869368
20	12.4	0.0	0.0	chr8	55455247	55455281	(89683355)	+	(GCG)n	Simple_repeat	1	35	(0)	3872416
1574	27.8	4.4	3.6	chr8	57205915	57206586	(87932050)	C	MER50	LTR/ERV1	(29)	705	28	3874990
2155	21.6	10.2	2.4	chr8	57209256	57210098	(87928538)	C	MER50-int	LTR/ERV1	(5568)	1637	729	3874991
1080	24.1	1.3	2.5	chr8	57210109	57210427	(87928209)	C	MER50	LTR/ERV1	(134)	600	286	3874991
828	29.3	5.5	3.9	chr8	57210498	57210965	(87927671)	C	MER50	LTR/ERV1	(231)	503	28	3874994
191	35.0	2.5	6.0	chr8	60708637	60708803	(84429833)	+	L2b	LINE/L2	2999	3159	(216)	3879626
1496	13.6	6.5	0.0	chr8	61436781	61437038	(83701598)	C	LTR48	LTR/ERV1	(0)	787	512	3880645
564	14.7	3.1	0.2	chr8	61437258	61437367	(83701269)	C	LTR48	LTR/ERV1	(336)	451	240	3880645
729	13.4	0.0	2.5	chr8	63165593	63165711	(81972925)	+	AluJo	SINE/Alu	17	132	(180)	3882833
240	30.4	1.4	0.0	chr8	63165753	63165821	(81972815)	+	MER91A	DNA/hAT-Tip100	50	119	(77)	3882834
2898	6.8	4.3	0.0	chr8	63165928	63166307	(81972329)	+	THE1A-int	LTR/ERVL-MaLR	1184	1580	(0)	3882835
2130	12.0	3.9	1.7	chr8	75104771	75105071	(70033565)	C	AluSg	SINE/Alu	(1)	309	2	3900533
216	1.0	0.9	0.9	chr8	75105072	75105282	(70033354)	+	(CCTTT)n	Simple_repeat	1	213	(0)	3900534
1011	17.6	1.1	0.6	chr8	75105290	75105465	(70033171)	C	AluSp	SINE/Alu	(0)	313	137	3900535
16	3.7	3.3	3.2	chr8	75105532	75105561	(70033075)	+	(GTTTT)n	Simple_repeat	1	31	(0)	3900536
3428	21.6	6.9	6.2	chr8	75105563	75106430	(70032206)	C	MER21C	LTR/ERVL	(64)	874	1	3900537
3028	18.6	9.2	2.9	chr8	75188622	75189342	(69949294)	C	LTR48	LTR/ERV1	(16)	771	1	3900641
2719	15.5	11.2	7.3	chr8	79783453	79783519	(65355117)	+	L1MB8	LINE/L1	6118	6178	(0)	3906507
1539	22.7	0.5	1.3	chr8	81732956	81733334	(63405302)	+	MER96B	DNA/hAT-Tip100	2	377	(40)	3909702
298	29.0	3.1	1.6	chr8	85659943	85660068	(59478568)	C	L1ME4b	LINE/L1	(0)	892	765	3914925
322	27.6	0.0	0.0	chr8	85660141	85660227	(59478409)	C	MLT1F1	LTR/ERVL-MaLR	(482)	87	1	3914926
4592	9.3	0.1	1.5	chr8	85660229	85660904	(59477732)	C	L1P1	LINE/L1	(2973)	3173	2507	3914927
10532	11.1	2.9	3.5	chr8	89808232	89809821	(55328815)	+	THE1C-int	LTR/ERVL-MaLR	1	1580	(0)	3920295
2097	16.8	3.1	0.0	chr8	95685451	95685796	(49452840)	C	LTR18A	LTR/ERVL	(0)	357	1	3929135
1973	26.7	5.9	3.3	chr8	95685797	95686343	(49452293)	C	L1MCa	LINE/L1	(5547)	1581	947	3929133
13	19.6	2.9	0.0	chr8	103500804	103500838	(41637798)	+	(GCC)n	Simple_repeat	1	36	(0)	3942427
2124	20.0	8.6	3.5	chr8	105274710	105275413	(39863223)	+	LTR48	LTR/ERV1	1	722	(65)	3944920
11014	20.7	2.9	2.2	chr8	113520466	113522730	(31615906)	+	MER50-int	LTR/ERV1	2782	5062	(2143)	3956233
767	23.6	10.4	7.0	chr8	115202704	115203284	(29935352)	+	MER34C2	LTR/ERV1	5	595	(0)	3958382
435	32.2	8.1	1.2	chr8	131777085	131777326	(13361310)	+	MIRb	SINE/MIR	3	262	(6)	3987391
2759	15.9	11.9	2.7	chr8	134113634	134114305	(11024331)	+	LTR48	LTR/ERV1	1	742	(45)	3991775
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
3750	17.9	3.2	5.4	chr8	143747179	143747910	(1390726)	C	L1M4	LINE/L1	(2808)	3338	2616	4006598
93	3.1	0.0	1.9	chr8	143747911	143748014	(1390622)	+	(TCCTT)n	Simple_repeat	1	104	(0)	4006601
1903	15.5	0.0	0.4	chr8	143748017	143748293	(1390343)	C	AluJb	SINE/Alu	(35)	277	2	4006602
3750	17.9	3.2	5.4	chr8	143748294	143748430	(1390206)	C	L1M4	LINE/L1	(3533)	2613	2479	4006598
1387	25.7	7.0	3.4	chr8	144125268	144125631	(1013005)	+	L1MC4	LINE/L1	7167	7535	(507)	4007142
3289	23.4	8.8	5.7	chr8	144568361	144569807	(568829)	+	L1ME1	LINE/L1	512	2653	(3666)	4007746
271	34.2	5.1	0.0	chr8	144686091	144686239	(452397)	C	L1MEd	LINE/L1	(5739)	1347	1191	4007918
275	5.4	2.1	3.6	chr9	10001	10433	(138384284)	+	(TAACCC)n	Simple_repeat	1	442	(0)	4008489
3831	12.7	31.0	1.2	chr9	10436	11574	(138383143)	C	TAR1	Satellite/telo	(13)	2098	469	4008490
459	33.3	11.0	2.9	chr9	2544419	2544767	(135849950)	C	L2a	LINE/L2	(0)	3426	2982	4012267
1651	20.1	0.7	2.6	chr9	2544768	2545070	(135849647)	+	AluJb	SINE/Alu	1	297	(15)	4012268
335	38.4	12.1	4.4	chr9	2545071	2545129	(135849588)	C	L2a	LINE/L2	(394)	2981	2931	4012267
314	26.3	2.2	5.0	chr9	16008642	16008781	(122385936)	C	LTR104_Mam	LTR/Gypsy	(341)	1168	1033	4031333
336	27.7	1.7	8.7	chr9	16154644	16154896	(122239821)	C	UCON51	LTR?	(14)	236	2	4031534
3093	17.7	10.0	2.5	chr9	20114827	20115552	(118279165)	C	LTR48	LTR/ERV1	(0)	787	1	4037413
334	21.7	0.0	0.0	chr9	21765329	21765388	(116629329)	+	MER58C	DNA/hAT-Charlie	39	98	(117)	4039669
18	19.5	3.3	4.8	chr9	21765389	21765449	(116629268)	+	GA-rich	Low_complexity	1	63	(0)	4039670
319	25.0	4.8	0.0	chr9	21765466	21765565	(116629152)	+	MER58C	DNA/hAT-Charlie	103	207	(8)	4039671
563	33.2	7.1	6.8	chr9	21765569	21766225	(116628492)	+	L1MEf	LINE/L1	622	1280	(4962)	4039668
2403	8.8	0.0	0.0	chr9	36972746	36973041	(101421676)	+	AluSx1	SINE/Alu	1	296	(16)	4061801
135	3.5	1.4	0.0	chr9	36973042	36973188	(101421529)	+	(GAAAG)n	Simple_repeat	1	149	(0)	4061802
2605	29.9	5.1	4.7	chr9	65388281	65390272	(73004445)	+	SST1	Satellite/centr	1	2001	(859)	4076190
268	8.8	1.9	1.9	chr9	70038166	70038638	(68356079)	+	(TGGAA)n	Simple_repeat	1	482	(0)	4082515
253	26.1	0.0	0.0	chr9	70038639	70038703	(68356014)	+	MER102a	DNA/hAT-Charlie	90	154	(176)	4082516
1450	18.1	9.9	24.5	chr9	71822521	71822905	(66571812)	+	LTR49	LTR/ERV1	2	254	(341)	4085326
1597	19.5	1.5	1.5	chr9	71822906	71823172	(66571545)	C	AluJb	SINE/Alu	(45)	267	1	4085327
1450	18.1	9.9	24.5	chr9	71823173	71823495	(66571222)	+	LTR49	LTR/ERV1	255	595	(0)	4085326
77	8.8	0.0	0.0	chr9	76175202	76175310	(62219407)	+	(GAATG)n	Simple_repeat	1	109	(0)	4092041
20	6.9	0.0	0.0	chr9	76175311	76175341	(62219376)	+	(AGAAC)n	Simple_repeat	1	31	(0)	4092042
2415	10.1	0.3	0.0	chr9	77111008	77111314	(61283403)	C	AluSp	SINE/Alu	(5)	308	1	4093769
2847	18.4	11.8	3.8	chr9	77111315	77111925	(61282792)	+	LTR48	LTR/ERV1	106	786	(1)	4093768
3340	16.2	10.6	1.5	chr9	81420517	81421231	(56973486)	+	LTR48	LTR/ERV1	1	787	(0)	4099874
19	17.2	0.0	0.0	chr9	83957142	83957174	(54437543)	+	(T)n	Simple_repeat	1	33	(0)	4103821
459	28.6	6.9	0.6	chr9	97632719	97632880	(40761837)	C	L2a	LINE/L2	(763)	2656	2484	4124835
13007	16.8	2.5	6.0	chr9	126734876	126735334	(11659383)	+	L1M4	LINE/L1	1319	1769	(5748)	4176923
2200	11.0	1.3	0.0	chr9	129361866	129362166	(9032551)	+	AluSq2	SINE/Alu	1	305	(8)	4182649
188	34.3	4.5	4.3	chr9	129362167	129362277	(9032440)	C	MIR	SINE/MIR	(50)	180	66	4182648
622	31.3	7.7	5.2	chr9	130274621	130275208	(8119509)	C	L1MC4a	LINE/L1	(99)	6025	5438	4184698
582	21.8	4.1	0.0	chr9	135384765	135384906	(3009811)	+	L1MB3	LINE/L1	5979	6126	(57)	4193132
341	5.1	0.0	0.0	chr9	135384911	135385283	(3009434)	+	(AGGAATGGCT)n	Simple_repeat	1	373	(0)	4193133
1057	12.0	0.0	0.0	chr9	135385285	135385426	(3009291)	+	AluJb	SINE/Alu	154	295	(17)	4193134
1384	22.1	7.0	8.3	chrX	21242378	21242796	(134798099)	+	MLT1C	LTR/ERVL-MaLR	2	414	(53)	4394241
11824	12.9	1.6	0.7	chrX	21242799	21245550	(134795345)	C	L1PA17	LINE/L1	(0)	6166	3384	4394242
15	20.0	2.5	0.0	chrX	23783539	23783578	(132257317)	+	(CGCC)n	Simple_repeat	1	41	(0)	4398057
13	17.8	0.0	2.9	chrX	30653184	30653217	(125387678)	+	(CCGCCC)n	Simple_repeat	1	34	(0)	4408578
2729	12.4	0.9	9.1	chrX	30788554	30799929	(125240966)	+	(GCCTT)n	Simple_repeat	1	10415	(0)	4408794
2729	12.4	0.9	9.1	chrX	30800160	30806701	(125234194)	+	(GCCTT)n	Simple_repeat	5	6017	(0)	4408796
2269	18.4	16.3	3.3	chrX	34659458	34660120	(121380775)	C	LTR48	LTR/ERV1	(3)	784	19	4414089
15	10.8	3.3	0.0	chrX	40087112	40087141	(115953754)	+	(GGCCGG)n	Simple_repeat	1	31	(0)	4421750
1546	24.7	5.1	0.5	chrX	44432391	44432805	(111608090)	+	LTR16A	LTR/ERVL	17	451	(0)	4428851
876	16.5	0.0	0.0	chrX	44432837	44432963	(111607932)	+	AluJo	SINE/Alu	1	127	(185)	4428852
1539	13.7	1.2	1.1	chrX	48020781	48021052	(108019843)	C	L1MA5	LINE/L1	(1)	6290	6025	4435169
1818	16.4	0.0	0.0	chrX	49345995	49346281	(106694614)	C	AluSx	SINE/Alu	(25)	287	1	4437942
48	5.6	0.0	0.0	chrX	50813137	50813193	(105227702)	+	(GGC)n	Simple_repeat	1	57	(0)	4439878
13	17.5	3.1	0.0	chrX	50813194	50813225	(105227670)	+	(AGC)n	Simple_repeat	1	33	(0)	4439879
1482	26.2	5.2	4.8	chrX	53685558	53686114	(102354781)	+	L1ME3G	LINE/L1	122	680	(244)	4444217
245	18.8	10.4	0.0	chrX	54452930	54452998	(101587897)	+	L1ME2z	LINE/L1	6353	6429	(15)	4445842
2026	10.4	0.0	0.0	chrX	55185830	55186088	(100854807)	C	AluSc	SINE/Alu	(14)	295	37	4446869
996	15.8	11.8	2.3	chrX	55186089	55186215	(100854680)	+	MER21B	LTR/ERVL	85	236	(632)	4446868
1050	21.8	3.6	1.4	chrX	55186217	55186513	(100854382)	C	MER68-int	LTR/ERVL	(892)	2098	1795	4446870
13	19.6	0.0	0.0	chrX	56995464	56995493	(99045402)	+	(GGC)n	Simple_repeat	1	30	(0)	4448724
12	15.3	3.5	0.0	chrX	56995842	56995870	(99045025)	+	(CCCT)n	Simple_repeat	1	30	(0)	4448725
107	4.2	0.8	1.5	chrX	72039025	72039153	(84001742)	+	(CTTTC)n	Simple_repeat	1	130	(0)	4462579
886	16.1	3.5	1.0	chrX	72039260	72039453	(84001442)	C	L1ME3C	LINE/L1	(230)	5893	5695	4462580
2464	11.9	0.6	1.2	chrX	72100490	72100830	(83940065)	+	MER1B	DNA/hAT-Charlie	1	339	(0)	4462710
15	21.4	4.4	0.0	chrX	73944061	73944105	(82096790)	+	A-rich	Low_complexity	1	47	(0)	4464970
30	12.2	4.8	0.0	chrX	73944168	73944229	(82096666)	+	(ACGGCA)n	Simple_repeat	1	65	(0)	4464971
6345	10.5	4.5	1.5	chrX	90914039	90915099	(65125796)	C	LTR12D	LTR/ERV1	(0)	1579	317	4482971
532	12.4	0.0	0.0	chrX	90915054	90915142	(65125753)	+	LTR12E	LTR/ERV1	382	470	(852)	4482972
21	20.8	0.0	5.9	chrX	105822273	105822340	(50218555)	+	G-rich	Low_complexity	1	68	(0)	4502079
2089	16.7	12.5	2.2	chrX	107399145	107399596	(48641299)	+	MLT1D	LTR/ERVL-MaLR	1	505	(0)	4504095
9984	14.3	3.0	0.5	chrX	107818416	107820006	(48220889)	+	MSTA-int	LTR/ERVL-MaLR	1	1631	(0)	4504909
201	26.3	27.3	1.3	chrX	107893673	107893826	(48147069)	+	MIRc	SINE/MIR	2	210	(58)	4505003
265	28.4	7.8	4.0	chrX	107893874	107893972	(48146923)	C	L2c	LINE/L2	(1)	3386	3284	4505004
421	26.1	12.5	11.8	chrX	107894001	107894258	(48146637)	+	L2c	LINE/L2	3117	3361	(14)	4505005
4784	14.2	1.8	0.1	chrX	107909878	107910690	(48130205)	C	L1MA7	LINE/L1	(2)	6289	5463	4505036
2012	25.7	8.9	10.6	chrX	107910691	107910768	(48130127)	C	HAL1	LINE/L1	(1054)	1453	1382	4505032
79	0.0	0.0	0.0	chrX	107910769	107910838	(48130057)	+	(TTTCC)n	Simple_repeat	1	70	(0)	4505037
2012	25.7	8.9	10.6	chrX	107910839	107910880	(48130015)	C	HAL1	LINE/L1	(1126)	1381	1379	4505032
2116	11.8	0.0	0.0	chrX	107910881	107911152	(48129743)	C	AluSz	SINE/Alu	(39)	273	2	4505038
1932	18.7	11.3	8.6	chrX	113126417	113127018	(42913877)	C	LTR48	LTR/ERV1	(2)	785	166	4512429
2039	19.8	6.8	8.9	chrX	119199888	119200596	(36840299)	C	LTR48	LTR/ERV1	(58)	729	1	4520632
9697	13.3	1.9	6.8	chrX	123931976	123932953	(32107942)	+	THE1C-int	LTR/ERVL-MaLR	449	1407	(224)	4527739
2535	7.4	0.7	0.0	chrX	126621042	126621350	(29419545)	+	AluSc8	SINE/Alu	1	311	(0)	4531368
1452	20.9	13.4	4.8	chrX	126621351	126621577	(29419318)	C	MER66B	LTR/ERV1	(199)	287	1	4531367
558	28.4	9.3	2.7	chrX	126621578	126621728	(29419167)	C	L1ME3D	LINE/L1	(135)	6107	5936	4531366
234	25.0	0.0	5.9	chrX	133441466	133441533	(22599362)	+	MIR1_Amn	SINE/MIR	12	75	(155)	4540934
205	36.0	2.3	0.0	chrX	133441530	133441615	(22599280)	+	MIR3	SINE/MIR	113	200	(8)	4540935
16	23.4	2.9	4.2	chrX	135985459	135985528	(20055367)	+	G-rich	Low_complexity	1	72	(0)	4545166
11659	9.1	0.2	0.4	chrX	143874962	143876543	(12164352)	+	THE1B-int	LTR/ERVL-MaLR	1	1580	(0)	4557136
2078	13.5	2.2	5.8	chrX	143876544	143876921	(12163974)	+	THE1B	LTR/ERVL-MaLR	1	364	(0)	4557136
13	0.0	0.0	0.0	chrX	154490487	154490503	(1550392)	+	(GCG)n	Simple_repeat	1	17	(0)	4571926
308	18.4	0.0	0.0	chrY	10652497	10652545	(46574870)	C	AluYa8	SINE/Alu	(39)	271	223	4587883
149	10.5	1.4	1.4	chrY	10664579	10664856	(46562559)	+	(CCATT)n	Simple_repeat	1	282	(0)	4587925
28	9.5	0.0	0.0	chrY	10666839	10666883	(46560532)	+	(CACTC)n	Simple_repeat	1	45	(0)	4587932
372	21.9	1.4	0.0	chrY	10678453	10678525	(46548890)	C	AluYj4	SINE/Alu	(14)	297	224	4587980
83	9.2	1.9	1.9	chrY	10678539	10678694	(46548721)	+	(ATTCC)n	Simple_repeat	1	159	(0)	4587981
251	27.9	2.9	0.0	chrY	10678699	10678766	(46548649)	C	AluYj4	SINE/Alu	(17)	294	225	4587982
49	8.8	0.0	0.0	chrY	10678779	10678850	(46548565)	+	(CCATT)n	Simple_repeat	1	72	(0)	4587983
295	25.5	3.4	0.7	chrY	10678851	10678946	(46548469)	C	AluJb	SINE/Alu	(12)	290	192	4587984
75	7.6	0.0	0.0	chrY	10687986	10688083	(46539332)	+	(ATTCC)n	Simple_repeat	1	98	(0)	4588000
322	25.1	3.0	0.5	chrY	10693618	10693705	(46533710)	C	AluY	SINE/Alu	(7)	295	207	4588025
222	19.6	0.7	0.7	chrY	10693706	10694157	(46533258)	+	(TTCCA)n	Simple_repeat	1	455	(0)	4588026
358	14.3	0.0	0.0	chrY	10932083	10932131	(46295284)	C	AluYi6	SINE/Alu	(39)	272	224	4588464
6112	24.5	0.6	0.4	chrY	10932144	10932420	(46294995)	+	(TTCCA)n	Simple_repeat	3	280	(0)	4588465
6112	24.5	0.6	0.4	chrY	10939178	10940587	(46286828)	+	(TTCCA)n	Simple_repeat	5	1415	(0)	4588487
6112	24.5	0.6	0.4	chrY	10942264	10945531	(46281884)	+	(TTCCA)n	Simple_repeat	1	3273	(0)	4588495
4917	25.0	0.5	0.3	chrY	10945942	10948880	(46278535)	+	(TCCAC)n	Simple_repeat	1	2949	(0)	4588499
314	22.4	2.9	0.0	chrY	10950282	10950348	(46277067)	C	AluYj4	SINE/Alu	(18)	293	225	4588504
235	26.3	10.9	0.0	chrY	10950303	10950359	(46277056)	+	SVA_A	Retroposon/SVA	332	395	(992)	4588505
4917	25.0	0.5	0.3	chrY	10950360	10951162	(46276253)	+	(TCCAC)n	Simple_repeat	1	804	(0)	4588506
301	17.0	0.0	0.0	chrY	10958417	10958463	(46268952)	C	AluYj4	SINE/Alu	(41)	270	224	4588520
226	15.8	0.0	5.0	chrY	10958430	10958469	(46268946)	+	SVA_F	Retroposon/SVA	332	369	(1006)	4588521
1259	23.0	0.4	0.6	chrY	10958474	10959925	(46267490)	+	(CATTC)n	Satellite	1	1451	(0)	4588522
73	12.0	0.0	0.0	chrY	10973565	10973692	(46253723)	+	(TCCAT)n	Simple_repeat	1	128	(0)	4588565
371	24.0	2.8	0.0	chrY	10988388	10988478	(46238937)	C	AluSx	SINE/Alu	(13)	289	188	4588607
82	7.1	0.0	0.0	chrY	10991198	10991301	(46236114)	+	(TCCAT)n	Simple_repeat	1	104	(0)	4588613
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638
315	20.6	3.1	0.0	chrY	11012144	11012206	(46215209)	C	AluYj4	SINE/Alu	(23)	288	224	4588685
248	15.5	0.0	4.7	chrY	11012166	11012212	(46215203)	+	SVA_F	Retroposon/SVA	330	380	(1004)	4588686
55	32.9	1.0	0.0	chrY	11012221	11012247	(46215168)	+	(TTCCA)n	Simple_repeat	1	28	(0)	4588687
85	6.9	0.0	0.0	chrY	11012248	11012354	(46215061)	+	(CATTC)n	Simple_repeat	1	107	(0)	4588688
55	32.9	1.0	0.0	chrY	11012355	11012527	(46214888)	+	(TTCCA)n	Simple_repeat	4	177	(0)	4588689
333	23.5	2.9	0.0	chrY	11016731	11016798	(46210617)	C	AluYj4	SINE/Alu	(18)	293	224	4588713
251	18.4	0.0	12.5	chrY	11016765	11016820	(46210595)	+	SVA_F	Retroposon/SVA	332	380	(995)	4588714
85	20.2	0.0	0.0	chrY	11016821	11016991	(46210424)	+	(ATTCC)n	Simple_repeat	1	171	(0)	4588715
294	21.8	0.0	0.0	chrY	11024506	11024560	(46202855)	C	AluYj4	SINE/Alu	(33)	278	224	4588731
320	23.8	1.6	0.5	chrY	11031071	11031156	(46196259)	C	AluY	SINE/Alu	(9)	293	208	4588745
321	23.5	2.9	0.0	chrY	11039221	11039288	(46188127)	C	AluSz6	SINE/Alu	(18)	294	225	4588770
1464	23.6	8.9	4.8	chrY	11281374	11281813	(45945602)	C	MER21C	LTR/ERVL	(22)	916	457	4589057
10957	28.2	0.5	0.1	chrY	26637975	26643170	(30584245)	+	(AATGG)n	Simple_repeat	1	5205	(0)	4607157
10957	28.1	0.5	0.1	chrY	26643208	26653351	(30574064)	+	(AATGG)n	Simple_repeat	1	10181	(0)	4607159
28	6.2	3.9	1.9	chrY	26653807	26653858	(30573557)	+	(AATCAAATGG)n	Simple_repeat	1	54	(0)	4607164
10957	28.2	0.5	0.1	chrY	26653859	26659290	(30568125)	+	(AATGG)n	Simple_repeat	5	5454	(0)	4607165
2520	29.1	0.4	0.0	chrY	26668441	26670861	(30556554)	+	(ATGGA)n	Simple_repeat	1	2429	(0)	4607174