3545	25.0	10.9	2.5	chr1	34894215	34894940	(214061482)	+	L1M4a2	LINE/L1	1485	2821	(8)	67624
229	35.6	4.6	0.9	chr1	56651048	56651152	(192305270)	+	MIR3	SINE/MIR	83	191	(17)	109258
488	32.6	11.0	7.6	chr1	65316257	65316598	(183639824)	+	L2c	LINE/L2	3032	3386	(1)	125565
2378	11.7	1.3	1.9	chr1	79164554	79164929	(169791493)	+	THE1C	LTR/ERVL-MaLR	1	374	(1)	145518
7889	11.8	15.4	4.2	chr1	79164935	79166326	(169790096)	+	THE1C-int	LTR/ERVL-MaLR	5	1580	(0)	145518
2597	8.4	5.0	1.9	chr1	144101293	144106919	(104849503)	+	(TGGCTGGCT)n	Simple_repeat	1	5911	(0)	208844
1306	14.0	0.0	7.4	chr1	186402405	186402625	(62553797)	C	AluJo	SINE/Alu	(22)	290	86	275540
616	24.0	2.3	0.0	chr1	186402635	186402759	(62553663)	C	AluJo	SINE/Alu	(56)	256	129	275542
568	20.2	11.3	0.8	chr1	186402763	186402881	(62553541)	C	AluJr4	SINE/Alu	(179)	133	1	275543
311	35.7	6.5	1.4	chr1	197341890	197342034	(51614388)	C	L2c	LINE/L2	(253)	3134	2982	289807
757	29.4	3.9	2.0	chr10	66594737	66594989	(67202433)	+	MIR	SINE/MIR	5	262	(0)	466310
3878	26.0	6.8	10.6	chr10	66595009	66595331	(67202091)	+	L1M3c	LINE/L1	639	896	(5883)	466311
2140	9.7	0.0	0.4	chr10	74931744	74932010	(58865412)	C	AluSz	SINE/Alu	(45)	267	2	482143
770	28.8	6.9	5.8	chr10	74932224	74932466	(58864956)	C	MIR	SINE/MIR	(8)	254	9	482144
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
379	29.8	4.7	6.7	chr11	41494623	41494816	(93591806)	C	MLT1O	LTR/ERVL-MaLR	(278)	264	75	635535
9231	23.4	3.8	4.2	chr11	78630049	78631867	(56454755)	C	L1M1	LINE/L1	(4888)	2677	179	692369
26226	2.5	0.4	0.0	chr11	94232525	94238528	(40848094)	C	L1PA2	LINE/L1	(3)	6152	124	716864
15339	17.8	2.4	6.0	chr11	128082061	128087137	(6999485)	C	L1PA14	LINE/L1	(1823)	4850	2	768432
548	2.3	1.2	1.4	chr12	10001	10585	(133264724)	+	(CTAACC)n	Simple_repeat	1	592	(0)	778084
280	33.6	6.1	0.0	chr12	2255710	2255816	(131019493)	C	L2b	LINE/L2	(6)	3369	3256	781930
862	25.8	11.6	0.0	chr12	5874831	5875028	(127400281)	C	MER58A	DNA/hAT-Charlie	(0)	224	1	787660
541	8.9	1.2	0.0	chr12	71874128	71874206	(61401103)	+	MADE1	DNA/TcMar-Mariner	1	80	(0)	883022
1617	19.2	8.2	3.6	chr12	71874207	71874290	(61401019)	C	MLT1C	LTR/ERVL-MaLR	(386)	81	2	883021
468	14.5	3.5	4.3	chr12	71874291	71874405	(61400904)	C	L1MB7	LINE/L1	(712)	5452	5339	883020
750	18.4	2.2	0.0	chr12	71874424	71874559	(61400750)	C	MER2B	DNA/TcMar-Tigger	(197)	139	1	883023
9075	10.7	2.2	0.5	chr12	95434298	95435554	(37839755)	+	HSMAR1	DNA/TcMar-Mariner	9	1287	(0)	917233
778	24.6	2.1	1.1	chr13	27805485	27805669	(86558659)	C	MIR	SINE/MIR	(59)	203	17	1005542
10798	17.7	5.2	2.0	chr13	50213078	50217559	(64146769)	+	L1MB7	LINE/L1	119	4827	(1817)	1039788
1636	14.6	3.0	0.3	chr13	62020436	62020731	(52343597)	+	L1PA8	LINE/L1	5867	6170	(2)	1055501
2768	17.7	14.2	7.5	chr13	64879796	64880504	(49483824)	C	LTR1	LTR/ERV1	(18)	765	1	1059088
2507	16.9	14.3	4.2	chr13	68056803	68057351	(46306977)	C	LTR18B	LTR/ERVL	(0)	614	1	1063046
190	29.7	6.3	6.3	chr13	68057352	68057430	(46306898)	C	L2a	LINE/L2	(12)	3414	3336	1063047
817	19.4	6.6	0.0	chr13	71144117	71144271	(43220057)	+	LTR40b	LTR/ERVL	1	166	(296)	1067081
419	30.1	12.1	5.9	chr13	73221327	73221976	(41142352)	+	L2b	LINE/L2	2676	3375	(0)	1070201
12	16.6	4.5	4.3	chr13	75840439	75840482	(38523846)	+	GA-rich	Low_complexity	1	46	(0)	1073930
1379	24.6	5.9	10.1	chr13	81058620	81058984	(33305344)	+	HAL1M8	LINE/L1	2603	2980	(11)	1081066
548	23.9	3.5	7.5	chr13	83555950	83556159	(30808169)	C	MLT1F	LTR/ERVL-MaLR	(5)	544	280	1084127
12219	14.3	2.2	0.4	chr13	92855622	92858116	(21506212)	+	L1PA17	LINE/L1	3254	5792	(374)	1096099
315	19.7	2.7	0.0	chr13	95841255	95841325	(18523003)	C	L1M4	LINE/L1	(798)	5342	5270	1100749
1733	11.7	0.0	0.4	chr13	95841326	95841565	(18522763)	C	7SK	RNA	(92)	239	1	1100750
2749	15.1	2.9	0.4	chr13	95841569	95842072	(18522256)	C	L1M4	LINE/L1	(864)	5282	4766	1100749
267	22.2	0.0	0.0	chr14	39996226	39996270	(67047448)	C	MamGypsy2-I	LTR/Gypsy	(507)	3659	3615	1156387
1095	9.5	9.1	0.0	chr14	39996379	39996547	(67047171)	C	THE1B	LTR/ERVL-MaLR	(178)	186	1	1156388
520	31.0	14.3	6.9	chr14	102390360	102391027	(4652691)	+	MamRep605	LTR?	19	744	(105)	1254833
412	18.8	13.8	0.0	chr15	40204021	40204132	(61787057)	C	L1ME3	LINE/L1	(8)	6154	6025	1290851
464	31.2	4.2	0.5	chr16	1025755	1025960	(89312385)	C	MER2	DNA/TcMar-Tigger	(130)	215	2	1395420
330	24.4	1.2	2.4	chr16	34071698	34071779	(56266566)	+	AluJb	SINE/Alu	208	288	(24)	1463578
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
993	4.0	0.0	0.0	chr17	32822870	32822994	(50434447)	+	L1PA5	LINE/L1	6030	6154	(0)	1597471
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
786	32.2	6.9	2.7	chr18	2431881	2432368	(77940917)	C	LTR33	LTR/ERVL	(2)	513	4	1692656
28122	17.0	7.8	7.8	chr18	52790112	52792754	(27580531)	C	HUERS-P3b-int	LTR/ERV1	(7)	2901	90	1758952
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
6130	21.3	2.3	3.0	chr19	43235514	43237011	(15380605)	C	MER65-int	LTR/ERV1	(701)	4170	2684	1876416
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
15439	16.8	2.9	1.8	chr2	41364239	41366182	(200827347)	+	L1PA13	LINE/L1	160	2101	(4684)	1973866
2284	12.2	0.0	1.3	chr2	41366183	41366494	(200827035)	+	AluSc	SINE/Alu	2	309	(0)	1973867
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
572	36.5	2.3	2.3	chr2	137956387	137956652	(104236877)	+	LTR33A_	LTR/ERVL	1	266	(265)	2112776
2678	11.6	1.1	3.3	chr2	142490076	142490530	(99702999)	C	HERVH-int	LTR/ERV1	(0)	7713	7269	2118867
7119	17.2	3.9	3.8	chr2	142490520	142492037	(99701492)	C	HERVH-int	LTR/ERV1	(2702)	5011	3492	2118867
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
252	24.0	12.0	9.4	chr2	174014669	174014806	(68178723)	C	L2c	LINE/L2	(4)	3383	3242	2162568
733	24.7	10.4	1.4	chr2	174014855	174015136	(68178393)	C	MER102b	DNA/hAT-Charlie	(4)	337	2	2162569
278	34.7	7.7	3.0	chr2	189757136	189757334	(52436195)	C	L2	LINE/L2	(667)	2752	2544	2183321
1612	23.8	10.9	0.0	chr2	194127432	194127881	(48065648)	+	MLT1D	LTR/ERVL-MaLR	1	505	(0)	2189292
363	20.9	3.2	0.0	chr2	231832547	231832635	(10360894)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
331	23.9	2.1	0.0	chr2	231832636	231832725	(10360804)	+	MER20	DNA/hAT-Charlie	128	219	(0)	2247713
360	23.2	2.0	2.0	chr2	231832753	231832853	(10360676)	+	MER20	DNA/hAT-Charlie	119	219	(0)	2247713
2860	28.3	4.9	5.5	chr20	30283322	30285229	(34158938)	+	SST1	Satellite/centr	1	1895	(14)	2304820
558	27.2	1.9	3.6	chr20	39283211	39283388	(25160779)	C	MER5A	DNA/hAT-Charlie	(14)	164	1	2323855
1385	22.4	12.5	3.2	chr20	43991935	43992241	(20451926)	C	L2a	LINE/L2	(144)	3282	2948	2332414
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
1750	28.6	6.0	7.2	chr21	9822132	9823427	(36886556)	C	SST1	Satellite/centr	(1)	1562	284	2374905
3081	26.3	8.5	1.8	chr21	42836514	42836945	(3873038)	C	L1MC4a	LINE/L1	(1580)	6302	5844	2419418
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
194	23.1	0.0	1.9	chr22	11817844	11817896	(39000572)	C	MER5A	DNA/hAT-Charlie	(20)	169	118	2425392
2046	15.2	0.0	0.0	chr22	11877779	11878081	(38940387)	C	AluSx	SINE/Alu	(4)	308	6	2425483
1249	21.0	6.5	1.2	chr22	11896731	11897053	(38921415)	C	L1MB8	LINE/L1	(5)	6173	5833	2425507
2301	14.0	7.0	0.5	chr22	11897054	11897465	(38921003)	C	MER61C	LTR/ERV1	(0)	428	4	2425508
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
2583	9.9	0.0	0.0	chr22	33122346	33122658	(17695810)	C	AluSq2	SINE/Alu	(0)	313	1	2458441
6832	15.2	4.5	2.9	chr22	33122659	33123609	(17694859)	C	MER66-int	LTR/ERV1	(4512)	2164	1210	2458440
241	31.0	13.9	4.5	chr3	29811209	29811428	(168484131)	C	LTR78B	LTR/ERV1	(495)	801	558	2539691
480	25.9	3.3	0.0	chr3	29811430	29811545	(168484014)	C	L2a	LINE/L2	(3)	3423	3304	2539692
497	33.2	3.7	0.9	chr3	29811550	29811759	(168483800)	C	LTR78B	LTR/ERV1	(742)	554	339	2539691
351	27.9	3.0	2.4	chr3	100704515	100704679	(97590880)	C	L1ME4b	LINE/L1	(577)	315	150	2642091
2024	14.0	0.7	3.2	chr3	142554640	142554953	(55740606)	+	AluJr	SINE/Alu	1	306	(6)	2704296
2295	13.4	0.0	0.0	chr3	142554954	142555266	(55740293)	+	AluSq2	SINE/Alu	1	313	(0)	2704297
1321	28.2	3.9	2.6	chr4	90577	91239	(190123316)	C	L1MB2	LINE/L1	(936)	5204	4533	2788619
17	17.8	0.0	0.0	chr4	91260	91297	(190123258)	+	(TGTGTG)n	Simple_repeat	1	38	(0)	2788621
863	17.6	1.2	0.2	chr4	49090455	49091234	(141123321)	+	ALR/Alpha	Satellite/centr	1	788	(0)	2864886
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
765	23.2	4.1	11.8	chr4	49510094	49510415	(140704140)	C	L1MB8	LINE/L1	(43)	6135	5840	2865174
69	6.2	0.0	0.0	chr4	49510486	49510569	(140703986)	+	(TCCT)n	Simple_repeat	1	84	(0)	2865175
1754	15.9	7.5	0.3	chr4	57067382	57067691	(133146864)	+	L1MB1	LINE/L1	5829	6162	(6)	2873905
16	16.8	0.0	0.0	chr4	57067828	57067854	(133146701)	+	A-rich	Low_complexity	1	27	(0)	2873906
1361	25.1	10.8	6.2	chr4	104953394	104954099	(85260456)	C	MER21C	LTR/ERVL	(20)	918	1	2938861
504	20.0	2.4	2.4	chr4	121653816	121653938	(68560617)	+	MER106B	DNA/hAT-Charlie	937	1059	(0)	2961362
1613	19.2	2.6	0.0	chr4	121654075	121654376	(68560179)	+	MSTB1	LTR/ERVL-MaLR	123	432	(0)	2961363
2689	12.6	2.6	0.7	chr4	148378415	148378829	(41835726)	+	MSTA	LTR/ERVL-MaLR	6	428	(0)	2997044
331	23.6	12.0	0.0	chr4	148378930	148379090	(41835465)	+	L1ME3Cz	LINE/L1	516	698	(299)	2997045
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
874	25.9	8.9	1.8	chr5	33259054	33259325	(148278934)	+	L2a	LINE/L2	3134	3426	(0)	3098067
22	20.3	5.2	2.5	chr5	72305575	72305593	(109232666)	+	A-rich	Low_complexity	3	81	(0)	3148777
1675	12.5	0.9	0.4	chr5	106535533	106535764	(75002495)	C	AluSc	SINE/Alu	(27)	282	50	3195261
18366	14.9	3.1	2.3	chr5	118286332	118291960	(63246299)	C	L1PA15	LINE/L1	(6)	6779	1103	3210671
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
12017	12.4	5.7	2.5	chr6	119236728	119237363	(51568616)	+	Tigger1	DNA/TcMar-Tigger	1446	2071	(347)	3486334
2246	14.3	1.8	2.7	chr6	146667101	146667585	(24138394)	C	MER34B	LTR/ERV1	(30)	535	1	3524333
318	39.2	3.0	4.2	chr7	8898118	8898354	(150447619)	+	MLT1I	LTR/ERVL-MaLR	103	336	(75)	3573052
4553	15.5	3.6	0.6	chr7	8898378	8899942	(150446031)	C	L1PA17	LINE/L1	(105)	6061	4454	3573053
1650	19.0	9.8	0.5	chr7	9793369	9793738	(149552235)	C	MLT1A1	LTR/ERVL-MaLR	(0)	408	1	3574159
11860	11.6	3.0	0.6	chr7	42998080	43000000	(116345973)	C	Tigger1	DNA/TcMar-Tigger	(0)	2418	450	3621963
94	10.7	1.1	1.1	chr7	57495470	57495644	(101850329)	+	(GGAAT)n	Simple_repeat	1	177	(0)	3642547
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
367	31.9	13.8	4.8	chr7	107896325	107896537	(51449436)	C	MIRb	SINE/MIR	(19)	249	14	3719800
3710	10.6	1.6	14.0	chr7	138527776	138528547	(20817426)	C	LTR76	LTR/ERV1	(0)	675	1	3763805
9567	21.4	2.1	1.6	chr7	145281964	145283888	(14062085)	C	L1MA2	LINE/L1	(5619)	1946	12	3774416
2932	19.4	0.7	1.0	chr7	145283909	145284527	(14061446)	C	L1M2	LINE/L1	(986)	5317	4697	3774418
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
2155	21.6	10.2	2.4	chr8	57209256	57210098	(87928538)	C	MER50-int	LTR/ERV1	(5568)	1637	729	3874991
1080	24.1	1.3	2.5	chr8	57210109	57210427	(87928209)	C	MER50	LTR/ERV1	(134)	600	286	3874991
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
1387	25.7	7.0	3.4	chr8	144125268	144125631	(1013005)	+	L1MC4	LINE/L1	7167	7535	(507)	4007142
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
235	23.8	4.5	3.8	chr9	63823016	63823908	(74570809)	+	(CA)n	Simple_repeat	1	933	(0)	4074777
1417	31.2	18.4	2.0	chr9	100536666	100537676	(37857041)	+	L3	LINE/CR1	2874	4088	(11)	4130337
280	27.9	8.9	4.9	chrX	5426345	5426506	(150614389)	C	L2	LINE/L2	(665)	2754	2586	4368479
3946	17.6	2.1	1.9	chrX	15112662	15113430	(140927465)	C	L1MB8	LINE/L1	(5)	6173	5404	4383785
1271	10.6	0.6	0.0	chrX	15113433	15113611	(140927284)	C	MLT2B4	LTR/ERVL	(376)	180	1	4383786
2174	13.4	1.3	0.0	chrX	16332302	16332608	(139708287)	C	AluSz	SINE/Alu	(1)	311	1	4385845
316	30.1	7.2	0.0	chrX	46208080	46208182	(109832713)	+	L2b	LINE/L2	3265	3375	(0)	4431768
4168	18.7	2.4	3.5	chrX	88485509	88486308	(67554587)	C	L1MB3	LINE/L1	(2064)	5141	4338	4480337
1797	15.1	1.1	0.7	chrX	95875151	95875434	(60165461)	+	AluJb	SINE/Alu	16	300	(12)	4488434
30	3.4	0.0	0.0	chrX	95875436	95875465	(60165430)	+	(GA)n	Simple_repeat	1	30	(0)	4488435
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638