403	6.7	0.0	0.0	chr1	31431749	31432232	(217524190)	+	(GATAGGGTG)n	Simple_repeat	1	484	(0)	60677
17	7.8	0.0	0.0	chr1	31762603	31762629	(217193793)	+	(CCACC)n	Simple_repeat	1	27	(0)	61274
300	29.3	4.3	4.8	chr1	40531160	40531324	(208425098)	+	L2-3_Crp	LINE/L2	844	1007	(1089)	79002
227	26.0	1.3	3.8	chr1	54810168	54810247	(194146175)	+	L2b	LINE/L2	3282	3359	(16)	105956
389	32.5	1.8	1.8	chr1	54810258	54810423	(194145999)	+	MIRb	SINE/MIR	57	222	(46)	105957
2710	12.4	1.0	0.5	chr1	86339370	86339774	(162616648)	+	MER48	LTR/ERV1	1	407	(0)	155464
25050	10.9	3.6	0.7	chr1	86339775	86343589	(162612833)	+	HERVH48-int	LTR/ERV1	1	3927	(2727)	155464
1273	10.3	0.0	0.6	chr1	144412576	144412741	(104543681)	+	U1	snRNA	1	165	(0)	209362
258	25.4	0.0	0.0	chr1	179586108	179586166	(69370256)	C	HAL1ME	LINE/L1	(2285)	180	122	265037
20	0.0	0.0	0.0	chr1	179586177	179586198	(69370224)	+	(A)n	Simple_repeat	1	22	(0)	265038
26	16.7	3.3	0.0	chr1	179586273	179586332	(69370090)	+	(TCGGCGC)n	Simple_repeat	1	62	(0)	265039
109	0.0	6.0	0.0	chr1	181023029	181023145	(67933277)	+	(TC)n	Simple_repeat	1	124	(0)	267309
1293	17.3	2.5	0.5	chr1	200487655	200487851	(48468571)	+	AluJb	SINE/Alu	87	287	(25)	294354
16	5.2	0.0	0.0	chr1	200487852	200487871	(48468551)	+	(GA)n	Simple_repeat	1	20	(0)	294355
28	0.0	0.0	0.0	chr1	200487873	200487899	(48468523)	+	(G)n	Simple_repeat	1	27	(0)	294356
39	2.7	0.0	0.0	chr1	200487903	200487940	(48468482)	+	(GA)n	Simple_repeat	1	38	(0)	294357
479	27.2	12.9	5.7	chr1	200487956	200488023	(48468399)	C	L2a	LINE/L2	(142)	3284	3217	294352
426	29.4	14.1	1.9	chr1	210330314	210330518	(38625904)	C	MIRb	SINE/MIR	(30)	238	5	310988
2561	14.1	7.9	0.2	chr1	226837970	226838404	(22118018)	+	LTR7C	LTR/ERV1	1	471	(0)	336564
2421	17.8	2.7	2.5	chr1	226838429	226838865	(22117557)	C	MER21B	LTR/ERVL	(427)	441	4	336563
40	29.6	0.0	0.0	chr1	228635559	228635667	(20320755)	+	(CA)n	Simple_repeat	1	109	(0)	338951
63	31.5	1.7	0.8	chr1	228635679	228635919	(20320503)	+	GA-rich	Low_complexity	1	245	(0)	338952
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
3314	20.8	8.0	0.9	chr1	243697023	243697840	(5258582)	C	Charlie1	DNA/hAT-Charlie	(0)	2781	1901	362940
13	15.4	7.7	5.7	chr1	245156422	245156486	(3799936)	+	(CCCGGCT)n	Simple_repeat	1	70	(0)	365570
17	21.5	4.9	1.6	chr1	245156526	245156586	(3799836)	+	(CTCCGG)n	Simple_repeat	1	64	(0)	365571
4916	17.0	1.4	2.2	chr10	71961542	71962659	(61834763)	C	HERVFH21-int	LTR/ERV1	(5148)	1381	341	476260
427	20.4	0.0	3.6	chr10	71962690	71962801	(61834621)	C	HERVFH21-int	LTR/ERV1	(6421)	108	1	476260
1023	20.6	21.2	4.8	chr10	71962802	71963199	(61834223)	C	LTR21A	LTR/ERV1	(0)	481	1	476260
528	6.0	1.5	0.0	chr10	99260264	99260330	(34537092)	+	LTR7B	LTR/ERV1	397	464	(0)	521154
1637	20.9	5.8	1.6	chr10	99260331	99260757	(34536665)	+	HERVH-int	LTR/ERV1	1	446	(7267)	521154
5242	9.8	0.3	0.1	chr10	103521078	103521813	(30275609)	C	HERVH-int	LTR/ERV1	(2693)	5020	4284	529134
2254	12.0	11.1	3.0	chr10	103521834	103522264	(30275158)	C	LTR7Y	LTR/ERV1	(2)	470	1	529135
743	20.1	3.0	0.2	chr10	123254330	123255943	(10541479)	+	(CAC)n	Simple_repeat	1	1663	(0)	560024
101	23.0	6.5	5.3	chr10	132364294	132364784	(1432638)	+	(CACTCA)n	Simple_repeat	1	557	(29)	571577
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
186	31.4	6.7	6.7	chr11	206453	206602	(134880020)	C	L2b	LINE/L2	(204)	3171	3022	573078
682	0.0	0.0	0.0	chr11	59566380	59566452	(75520170)	C	tRNA-Phe-TTY	tRNA	(3)	73	1	656983
13	5.2	0.0	0.0	chr11	59566628	59566647	(75519975)	+	(TTG)n	Simple_repeat	1	20	(0)	656984
351	27.8	7.5	6.8	chr11	59566657	59566907	(75519715)	C	L1ME3G	LINE/L1	(286)	638	386	656985
2124	9.5	3.2	1.0	chr11	61391207	61391252	(73695370)	+	AluSq2	SINE/Alu	1	47	(266)	660081
32	0.0	0.0	0.0	chr11	61391253	61391282	(73695340)	+	(G)n	Simple_repeat	1	30	(0)	660082
2124	9.5	3.2	1.0	chr11	61391283	61391540	(73695082)	+	AluSq2	SINE/Alu	48	311	(2)	660081
15	26.1	3.3	1.6	chr11	66070186	66070246	(69016376)	+	(GCCGG)n	Simple_repeat	1	63	(0)	668764
13	22.5	0.0	4.4	chr11	93543471	93543515	(41543107)	+	(GCCCCC)n	Simple_repeat	1	45	(0)	715720
191	33.1	1.3	8.6	chr11	93543565	93543821	(41542801)	+	L2a	LINE/L2	3128	3413	(13)	715721
1322	19.8	0.4	1.6	chr11	113668771	113669012	(21417610)	+	MER8	DNA/TcMar-Tigger	1	239	(0)	744955
1032	15.4	0.0	8.8	chr11	113669353	113669428	(21417194)	+	MER5A	DNA/hAT-Charlie	1	74	(115)	744956
1623	9.9	16.9	0.4	chr11	113669429	113669680	(21416942)	+	AluSz	SINE/Alu	1	302	(10)	744957
280	33.6	6.1	0.0	chr12	2255710	2255816	(131019493)	C	L2b	LINE/L2	(6)	3369	3256	781930
25	9.7	0.0	4.2	chr12	51270003	51270050	(82005259)	+	(CCCCGC)n	Simple_repeat	1	48	(0)	850995
232	19.8	15.8	0.0	chr12	69470052	69470173	(63805136)	+	MIRc	SINE/MIR	3	159	(49)	879353
2945	11.6	4.1	5.5	chr12	107848466	107848958	(25426351)	+	LTR19A	LTR/ERV1	1	486	(0)	938964
14484	10.2	5.4	2.4	chr12	107848959	107850386	(25424923)	+	LTR19-int	LTR/ERV1	1	1503	(4083)	938964
17	14.9	2.7	0.0	chr12	112381470	112381506	(20893803)	+	(AACAA)n	Simple_repeat	1	38	(0)	949062
12	9.7	0.0	0.0	chr12	112381753	112381774	(20893535)	+	(GGAG)n	Simple_repeat	1	22	(0)	949063
679	1.4	0.0	0.0	chr12	124927842	124927915	(8347394)	C	tRNA-Phe-TTY	tRNA	(2)	74	1	977166
135	1.6	0.8	0.0	chr14	77269669	77269795	(29773923)	+	(TC)n	Simple_repeat	1	128	(0)	1213918
25	0.0	0.0	0.0	chr14	77269796	77269822	(29773896)	+	(C)n	Simple_repeat	1	27	(0)	1213919
529	28.8	2.5	2.5	chr14	77269823	77269979	(29773739)	C	MIR	SINE/MIR	(43)	219	63	1213920
31	0.0	0.0	0.0	chr14	99420948	99420976	(7622742)	+	(G)n	Simple_repeat	1	29	(0)	1250017
1931	9.8	1.0	8.7	chr14	102233835	102234169	(4809549)	+	LTR21A	LTR/ERV1	173	481	(0)	1254480
26826	16.2	3.2	3.8	chr14	102234170	102239533	(4804185)	+	HERVFH21-int	LTR/ERV1	1	5332	(1197)	1254480
185	35.2	3.3	3.3	chr15	77699788	77699878	(24291311)	+	L2c	LINE/L2	3293	3383	(4)	1354494
231	22.6	12.1	1.9	chr15	81357485	81357588	(20633601)	C	MIR3	SINE/MIR	(29)	179	64	1361158
241	37.4	8.0	0.0	chr16	23860301	23860495	(66477850)	C	L2	LINE/L2	(889)	2530	2319	1443310
880	24.6	10.6	3.6	chr16	23860498	23860603	(66477742)	+	MER113	DNA/hAT-Charlie	7	116	(405)	1443311
12089	16.4	1.7	2.9	chr16	30547832	30548317	(59790028)	C	HERVFH21-int	LTR/ERV1	(6034)	495	1	1458305
3128	8.4	8.7	0.5	chr16	30548318	30548758	(59789587)	C	LTR21A	LTR/ERV1	(0)	481	1	1458305
316	25.0	0.0	0.0	chr16	34062726	34062789	(56275556)	+	AluYa8	SINE/Alu	223	286	(24)	1463558
390	15.6	3.0	0.0	chr16	34062893	34062956	(56275389)	+	AluYj4	SINE/Alu	224	289	(22)	1463559
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
1545	18.6	0.5	0.9	chr17	26935986	26936392	(56321049)	+	(GAATG)n	Satellite	1	409	(0)	1585984
411	16.2	4.2	0.0	chr17	26936393	26936460	(56320981)	+	AluYj4	SINE/Alu	224	294	(17)	1585985
993	4.0	0.0	0.0	chr17	32822870	32822994	(50434447)	+	L1PA5	LINE/L1	6030	6154	(0)	1597471
2465	8.1	0.0	0.3	chr17	68247054	68247360	(15010081)	+	AluSx1	SINE/Alu	2	307	(5)	1663829
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
3899	4.7	0.0	0.0	chr18	32000483	32000946	(48372339)	+	LTR7B	LTR/ERV1	1	464	(0)	1728607
8754	19.9	6.0	8.4	chr18	32000947	32003849	(48369436)	+	HERVH-int	LTR/ERV1	1	2830	(4883)	1728607
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
1031	26.8	13.8	2.2	chr18	79200300	79200694	(1172591)	+	L1MEf	LINE/L1	2654	3070	(3249)	1795300
4674	8.4	4.7	5.5	chr19	12229912	12230556	(46387060)	C	LTR19-int	LTR/ERV1	(4624)	962	308	1824044
1065	10.1	0.7	1.3	chr19	12230551	12230700	(46386916)	C	LTR19-int	LTR/ERV1	(5437)	149	1	1824044
2407	10.5	13.8	0.0	chr19	12230701	12231119	(46386497)	C	LTR19A	LTR/ERV1	(0)	486	1	1824044
1530	11.6	7.2	0.0	chr19	24033971	24034203	(34583413)	C	AluSz6	SINE/Alu	(18)	294	44	1847496
11383	1.6	0.0	2.0	chr19	36308415	36309981	(22307635)	+	SST1	Satellite/centr	1	1535	(28)	1862299
232	30.1	5.2	0.4	chr19	55670357	55670454	(2947162)	C	L2a	LINE/L2	(18)	3408	3251	1904263
220	22.9	1.6	1.6	chr2	10536735	10536796	(231656733)	C	MER5B	DNA/hAT-Charlie	(110)	68	7	1924932
16	26.0	0.8	4.6	chr2	10536995	10537062	(231656467)	+	A-rich	Low_complexity	1	65	(0)	1924933
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
8233	19.2	4.0	0.9	chr2	32975622	32976418	(209217111)	C	L1PA15	LINE/L1	(4738)	2047	1213	1961272
4473	22.3	2.6	5.5	chr2	32976419	32977885	(209215644)	C	L1PA14	LINE/L1	(5258)	1435	55	1961277
4095	19.3	4.8	2.6	chr2	61924294	61925260	(180268269)	C	HERVFH21-int	LTR/ERV1	(5540)	989	1	2005491
3200	6.6	8.7	0.2	chr2	61925261	61925700	(180267829)	C	LTR21A	LTR/ERV1	(0)	481	1	2005491
11	14.1	0.0	8.1	chr2	63050325	63050361	(179143168)	+	G-rich	Low_complexity	1	37	(0)	2007375
26	22.8	0.0	0.0	chr2	63050635	63050690	(179142839)	+	G-rich	Low_complexity	1	56	(0)	2007376
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
21	8.8	2.8	0.0	chr2	91478098	91478133	(150715396)	+	(CCG)n	Simple_repeat	1	37	(0)	2048369
27	0.0	0.0	9.1	chr2	101151444	101151487	(141042042)	+	(GCCCC)n	Simple_repeat	1	44	(0)	2059059
241	40.6	6.4	0.9	chr2	157340470	157340809	(84852720)	C	L3	LINE/CR1	(597)	3502	3143	2138615
685	9.5	1.9	1.9	chr2	157340836	157340942	(84852587)	C	LTR7B	LTR/ERV1	(0)	464	358	2138618
536	13.3	2.2	2.2	chr2	157340934	157341025	(84852504)	+	LTR7C	LTR/ERV1	380	471	(0)	2138619
9220	14.0	1.4	3.0	chr2	157341040	157342692	(84850837)	C	HERVH-int	LTR/ERV1	(5315)	2398	773	2138620
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
306	28.8	6.3	13.6	chr2	237642300	237642830	(4550699)	+	L1M3e	LINE/L1	1147	1636	(5394)	2256646
13	24.8	4.2	0.0	chr2	237642859	237642906	(4550623)	+	(TCCAGGC)n	Simple_repeat	1	50	(0)	2256647
276	11.7	1.6	6.2	chr20	3238836	3238899	(61205268)	C	MER45A	DNA/hAT-Tip100	(56)	122	62	2268485
2308	29.1	5.8	6.1	chr20	25867794	25869361	(38574806)	C	SST1	Satellite/centr	(1)	1562	1	2302878
411	24.8	0.0	9.9	chr20	29411577	29411728	(35032439)	+	LSAU	Satellite	2	138	(360)	2304090
2860	28.3	4.9	5.5	chr20	30283322	30285229	(34158938)	+	SST1	Satellite/centr	1	1895	(14)	2304820
1159	13.1	0.5	0.0	chr20	30519545	30520660	(33923507)	C	ACRO1	Satellite/acro	(55)	1121	1	2305115
182	12.5	16.9	7.2	chr20	31604743	31604811	(32839356)	+	L3	LINE/CR1	2481	2557	(1542)	2306390
229	26.0	5.2	1.4	chr20	31604877	31604950	(32839217)	+	MIR3	SINE/MIR	78	154	(54)	2306391
1580	25.5	17.3	5.1	chr20	38925727	38925938	(25518229)	C	L2b	LINE/L2	(2063)	1356	1146	2323161
239	17.4	0.0	0.0	chr20	50958126	50958171	(13485996)	C	MLT1O	LTR/ERVL-MaLR	(75)	467	422	2348089
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
797	22.4	0.5	0.1	chr21	8229975	8230765	(38479218)	+	(TCTC)n	Simple_repeat	2	795	(0)	2373327
446	20.9	0.1	6.5	chr21	8230776	8230919	(38479064)	+	MER39B	LTR/ERV1	298	454	(253)	2373328
880	13.0	0.0	0.0	chr21	8239093	8239215	(38470768)	C	AluSx3	SINE/Alu	(9)	302	180	2373343
47	0.0	0.0	0.0	chr21	8239234	8239276	(38470707)	+	(T)n	Simple_repeat	1	43	(0)	2373344
37669	0.4	1.2	0.8	chr21	8397807	8401980	(38308003)	+	LSU-rRNA_Hsa	rRNA	878	5034	(1)	2373509
312	38.2	6.5	3.6	chr21	8419786	8420171	(38289812)	C	HAL1	LINE/L1	(1230)	1277	880	2373573
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
12	20.8	0.0	2.9	chr21	8434102	8434136	(38275847)	+	(CCG)n	Simple_repeat	1	35	(0)	2373611
25399	0.2	1.5	0.8	chr21	8441146	8441992	(38267991)	+	LSU-rRNA_Hsa	rRNA	1	877	(4158)	2373624
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
785	22.6	0.5	0.1	chr21	8455261	8456884	(38253099)	+	(TCTC)n	Simple_repeat	1	1629	(0)	2373669
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
334	30.3	5.3	0.0	chr21	9246374	9246462	(37463521)	+	AluYa8	SINE/Alu	185	278	(32)	2374337
436	12.7	0.0	0.0	chr21	9246781	9246835	(37463148)	+	AluYj4	SINE/Alu	225	279	(32)	2374338
404	15.6	1.5	0.0	chr21	9247151	9247214	(37462769)	+	AluYj4	SINE/Alu	224	288	(23)	2374339
74	12.3	0.0	0.0	chr21	9247783	9247915	(37462068)	+	(TGGAA)n	Simple_repeat	1	133	(0)	2374340
378	16.1	3.0	0.2	chr21	9247917	9247990	(37461993)	+	AluJb	SINE/Alu	216	290	(12)	2374341
4267	17.6	2.5	2.2	chr21	9371294	9372433	(37337550)	C	L1PA16	LINE/L1	(1)	6165	5026	2374477
1562	29.8	5.6	6.5	chr21	9817901	9819192	(36890791)	C	SST1	Satellite/centr	(1)	1562	284	2374896
20	28.0	1.7	0.0	chr21	9819212	9819271	(36890712)	+	GA-rich	Low_complexity	1	61	(0)	2374897
1996	29.3	5.0	5.8	chr21	9819321	9820600	(36889383)	C	SST1	Satellite/centr	(11)	1552	284	2374899
1750	28.6	6.0	7.2	chr21	9822132	9823427	(36886556)	C	SST1	Satellite/centr	(1)	1562	284	2374905
3733	5.1	0.8	0.0	chr21	10269869	10270342	(36439641)	+	HSATI	Satellite	90	567	(10)	2375347
1732	14.4	0.0	5.1	chr21	10270343	10270634	(36439349)	+	AluSc8	SINE/Alu	13	289	(22)	2375348
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
194	23.1	0.0	1.9	chr22	11817844	11817896	(39000572)	C	MER5A	DNA/hAT-Charlie	(20)	169	118	2425392
590	21.9	0.2	0.0	chr22	11818875	11819136	(38999332)	+	ACRO1	Satellite/acro	1	262	(0)	2425395
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
13	18.3	2.6	2.5	chr22	19431815	19431853	(31386615)	+	G-rich	Low_complexity	1	40	(0)	2431997
2081	12.0	1.0	1.0	chr22	29457570	29457870	(21360598)	C	AluJr	SINE/Alu	(11)	301	1	2450600
559	25.9	14.3	6.6	chr22	29457873	29458116	(21360352)	+	LTR33A	LTR/ERVL	17	282	(238)	2450601
2429	9.9	0.0	0.3	chr22	29458274	29458586	(21359882)	+	AluSz	SINE/Alu	1	312	(0)	2450602
29	16.4	1.6	1.6	chr3	15332284	15332346	(182963213)	+	(TCC)n	Simple_repeat	1	64	(0)	2518597
13	11.9	0.0	6.2	chr3	15332634	15332665	(182962894)	+	(CCCGC)n	Simple_repeat	1	32	(0)	2518598
26	13.9	2.7	6.6	chr3	28738024	28738097	(169557462)	+	GA-rich	Low_complexity	1	76	(0)	2538197
725	29.0	1.2	0.0	chr3	28738098	28738266	(169557293)	C	MER63A	DNA/hAT-Blackjack	(38)	172	2	2538198
2353	16.4	4.9	0.2	chr3	119978045	119978507	(78317052)	+	LTR19A	LTR/ERV1	1	486	(0)	2668456
1201	6.7	0.0	0.0	chr3	119978508	119978656	(78316903)	+	LTR19-int	LTR/ERV1	1	149	(7570)	2668456
6478	10.2	5.3	1.3	chr3	119978637	119979604	(78315955)	+	LTR19-int	LTR/ERV1	277	1284	(4302)	2668456
13	5.2	0.0	0.0	chr3	120349090	120349109	(77946450)	+	(GCA)n	Simple_repeat	1	20	(0)	2669018
2295	13.4	0.0	0.0	chr3	142554954	142555266	(55740293)	+	AluSq2	SINE/Alu	1	313	(0)	2704297
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
14	13.7	0.0	5.6	chr4	49289254	49289289	(140925266)	+	(TTTTGC)n	Simple_repeat	1	36	(0)	2865068
1804	12.9	6.2	0.0	chr4	49289292	49289578	(140924977)	C	L1PA10	LINE/L1	(0)	6168	5863	2865069
290	27.5	0.0	0.0	chr4	49313048	49313116	(140901439)	C	MER47C	DNA/TcMar-Tigger	(28)	69	1	2865111
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
1094	12.9	0.2	0.0	chr4	49322499	49324803	(140889752)	+	ACRO1	Satellite/acro	1	2308	(0)	2865130
13	13.2	6.1	0.0	chr4	82430020	82430052	(107784503)	+	(GCGC)n	Simple_repeat	1	35	(0)	2907601
398	23.5	0.7	2.2	chr4	190022652	190022790	(191765)	+	LSAU	Satellite	2	138	(360)	3054526
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
425	26.6	11.3	3.6	chr5	29389989	29390241	(152148018)	+	LTR21C	LTR/ERVL	6	280	(231)	3092342
937	22.4	0.4	6.1	chr5	29390115	29390375	(152147884)	+	LTR21B	LTR/ERV1	192	437	(0)	3092343
9168	23.6	3.6	3.5	chr5	29390376	29394498	(152143761)	+	HERVFH21-int	LTR/ERV1	1	3971	(3748)	3092343
1675	12.5	0.9	0.4	chr5	106535533	106535764	(75002495)	C	AluSc	SINE/Alu	(27)	282	50	3195261
16299	11.7	3.8	0.3	chr5	125664930	125667298	(55870961)	C	HERVFH19-int	LTR/ERV1	(5263)	2456	1	3220314
2622	12.6	8.8	1.1	chr5	125667299	125667746	(55870513)	C	LTR19A	LTR/ERV1	(0)	486	1	3220314
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
873	15.9	0.0	0.0	chr6	79626136	79626267	(91179712)	+	FLAM_C	SINE/Alu	1	132	(11)	3431525
278	33.1	4.4	4.4	chr6	79626361	79626543	(91179436)	+	L2c	LINE/L2	1826	2008	(1411)	3431526
230	28.6	0.0	1.6	chr6	79626559	79626622	(91179357)	C	MIRb	SINE/MIR	(1)	267	205	3431527
12017	12.4	5.7	2.5	chr6	119236728	119237363	(51568616)	+	Tigger1	DNA/TcMar-Tigger	1446	2071	(347)	3486334
2230	12.5	0.0	0.7	chr6	143213489	143213816	(27592163)	C	AluSx1	SINE/Alu	(0)	312	1	3519542
112	24.9	0.7	1.7	chr7	4083573	4083862	(155262111)	+	(CCTC)n	Simple_repeat	1	292	(0)	3564226
344	13.1	12.8	0.0	chr7	33109717	33109777	(126236196)	C	Ricksha_0	DNA/MULE-MuDR	(251)	1482	1413	3607379
1263	11.2	0.0	0.0	chr7	33109782	33109951	(126236022)	+	AluSx1	SINE/Alu	131	300	(12)	3607380
94	10.7	1.1	1.1	chr7	57495470	57495644	(101850329)	+	(GGAAT)n	Simple_repeat	1	177	(0)	3642547
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
421	32.4	8.1	2.1	chr7	67753411	67753596	(91592377)	C	L3	LINE/CR1	(1099)	3000	2803	3652936
356	22.8	0.0	0.0	chr7	67753623	67753703	(91592270)	C	LTR19-int	LTR/ERV1	(6870)	115	35	3652939
461	29.9	3.5	0.0	chr7	67753709	67753845	(91592128)	C	LTR46-int	LTR/ERV1	(6826)	159	18	3652940
409	27.6	3.9	3.9	chr7	67753846	67754026	(91591947)	C	LTR46	LTR/ERV1	(4)	456	276	3652940
250	14.3	0.0	0.0	chr7	68218039	68218073	(91127900)	C	LTR7	LTR/ERV1	(0)	450	416	3654027
994	17.6	5.1	0.5	chr7	68218087	68218291	(91127682)	C	HERVH-int	LTR/ERV1	(7498)	215	1	3654028
2221	12.2	10.4	2.2	chr7	68218292	68218703	(91127270)	C	LTR7	LTR/ERV1	(0)	450	1	3654028
31	0.0	0.0	0.0	chr7	106101439	106101467	(53244506)	+	(C)n	Simple_repeat	1	29	(0)	3717099
15455	9.7	2.5	2.4	chr7	113235917	113238837	(46107136)	C	HERVH-int	LTR/ERV1	(4726)	2987	1	3726900
4039	2.3	0.2	0.0	chr7	113238838	113239308	(46106665)	C	LTR7Y	LTR/ERV1	(0)	472	1	3726900
27	15.7	3.4	6.5	chr7	140673118	140673206	(18672767)	+	(GCGCG)n	Simple_repeat	1	92	(0)	3767991
38564	2.9	1.0	0.1	chr7	153409398	153413807	(5932166)	C	HERV-Fc1-int	LTR/ERV1	(176)	4453	1	3786891
2931	3.8	0.0	0.0	chr7	153413808	153414153	(5931820)	C	HERV-Fc1_LTR1	LTR/ERV1	(0)	346	1	3786891
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
1574	27.8	4.4	3.6	chr8	57205915	57206586	(87932050)	C	MER50	LTR/ERV1	(29)	705	28	3874990
2155	21.6	10.2	2.4	chr8	57209256	57210098	(87928538)	C	MER50-int	LTR/ERV1	(5568)	1637	729	3874991
1080	24.1	1.3	2.5	chr8	57210109	57210427	(87928209)	C	MER50	LTR/ERV1	(134)	600	286	3874991
828	29.3	5.5	3.9	chr8	57210498	57210965	(87927671)	C	MER50	LTR/ERV1	(231)	503	28	3874994
6377	11.3	4.0	0.3	chr8	72133051	72134074	(73004562)	C	HERVFH21-int	LTR/ERV1	(2873)	3656	2594	3896096
706	14.0	1.3	6.2	chr8	72134071	72134230	(73004406)	C	HERVFH21-int	LTR/ERV1	(6377)	152	1	3896096
963	19.9	19.3	8.1	chr8	72134231	72134652	(73003984)	C	LTR21A	LTR/ERV1	(0)	481	1	3896096
9953	10.6	0.1	0.7	chr8	85742400	85743923	(59394713)	C	L1P1	LINE/L1	(2125)	4021	2507	3914963
2584	9.0	13.6	0.5	chr8	103002078	103002468	(42136168)	+	LTR7	LTR/ERV1	1	450	(0)	3941567
6757	14.6	0.9	1.7	chr8	103002488	103003762	(42134874)	+	HERVH-int	LTR/ERV1	3795	5364	(1290)	3941568
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
1387	25.7	7.0	3.4	chr8	144125268	144125631	(1013005)	+	L1MC4	LINE/L1	7167	7535	(507)	4007142
2458	5.4	20.6	0.0	chr9	11235080	11235465	(127159252)	C	LTR19A	LTR/ERV1	(0)	486	1	4024790
16348	16.8	2.7	1.2	chr9	11235896	11239586	(127155131)	C	L1PA16	LINE/L1	(261)	6432	2686	4024789
296	22.0	5.7	2.5	chr9	41229379	41230391	(97164326)	+	(TG)n	Simple_repeat	1	1071	(0)	4068370
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
268	8.8	1.9	1.9	chr9	70038166	70038638	(68356079)	+	(TGGAA)n	Simple_repeat	1	482	(0)	4082515
18	17.2	0.0	5.9	chr9	76394543	76394593	(62000124)	+	(GCCCC)n	Simple_repeat	1	51	(0)	4092455
2341	13.2	6.0	2.3	chr9	85880935	85881367	(52513350)	+	LTR7	LTR/ERV1	1	450	(0)	4106911
1926	18.4	4.3	2.4	chr9	85881368	85881817	(52512900)	+	HERVH-int	LTR/ERV1	1	459	(7254)	4106911
16	15.4	2.8	0.0	chr9	130043221	130043256	(8351461)	+	GA-rich	Low_complexity	1	37	(0)	4184177
15	23.6	5.5	0.0	chr9	130043273	130043342	(8351375)	+	(CGCCCC)n	Simple_repeat	1	73	(0)	4184178
13182	14.3	1.6	3.1	chrX	16219316	16221871	(139819024)	C	HERVH-int	LTR/ERV1	(4883)	2830	1	4385694
2698	6.5	16.8	0.0	chrX	16221872	16222257	(139818638)	C	LTR7B	LTR/ERV1	(0)	464	1	4385694
301	24.9	8.4	9.1	chrX	64842515	64842766	(91198129)	+	LTR21C	LTR/ERVL	34	283	(228)	4451764
732	23.3	0.7	10.9	chrX	64842607	64842898	(91197997)	+	LTR21B	LTR/ERV1	118	437	(0)	4451765
23003	19.1	4.2	3.6	chrX	64842899	64848198	(91192697)	+	HERVFH21-int	LTR/ERV1	1	5333	(1196)	4451765
2834	9.7	8.1	1.8	chrX	84738500	84738949	(71301946)	+	LTR21A	LTR/ERV1	1	481	(0)	4476241
17549	6.3	1.9	0.1	chrX	84738950	84738996	(71301899)	+	HERVFH21-int	LTR/ERV1	1	78	(6451)	4476241
37	0.0	0.0	0.0	chrX	84738997	84739028	(71301867)	+	(CT)n	Simple_repeat	1	32	(0)	4476242
17549	6.3	1.9	0.1	chrX	84739029	84741230	(71299665)	+	HERVFH21-int	LTR/ERV1	79	2290	(4239)	4476241
792	32.4	5.6	7.9	chrX	97261993	97262530	(58778365)	C	L2a	LINE/L2	(0)	3426	2901	4490379
1997	18.5	2.0	1.8	chrX	103050723	103051167	(52989728)	C	L1MCa	LINE/L1	(6005)	503	58	4497975
553	9.5	0.0	0.0	chrX	103051168	103051251	(52989644)	C	HERVFH21-int	LTR/ERV1	(6445)	84	1	4497976
2607	8.6	10.2	6.3	chrX	103051252	103051712	(52989183)	C	LTR21A	LTR/ERV1	(0)	481	1	4497976
15	6.7	6.1	2.9	chrX	135521657	135521689	(20519206)	+	GA-rich	Low_complexity	1	35	(0)	4544493
15476	13.6	1.4	2.4	chrX	141869184	141873017	(14167878)	C	LTR25-int	LTR/ERV1	(1048)	6140	1	4554426
3842	10.3	2.6	2.1	chrX	141873018	141873594	(14167301)	C	LTR19B	LTR/ERV1	(0)	580	1	4554426
6112	24.5	0.6	0.4	chrY	10939178	10940587	(46286828)	+	(TTCCA)n	Simple_repeat	5	1415	(0)	4588487
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638
1464	23.6	8.9	4.8	chrY	11281374	11281813	(45945602)	C	MER21C	LTR/ERVL	(22)	916	457	4589057
338	21.0	6.9	0.0	chrY	11281975	11282055	(45945360)	C	MER21C	LTR/ERVL	(822)	116	30	4589057
632	25.3	2.2	1.7	chrY	11282071	11282251	(45945164)	C	MER5A	DNA/hAT-Charlie	(0)	189	8	4589058
1081	32.1	12.4	1.6	chrY	11282268	11282912	(45944503)	+	L2	LINE/L2	916	1640	(1779)	4589056