403	6.7	0.0	0.0	chr1	31431749	31432232	(217524190)	+	(GATAGGGTG)n	Simple_repeat	1	484	(0)	60677
2303	10.5	0.3	0.0	chr1	36527463	36527756	(212428666)	C	AluSx4	SINE/Alu	(15)	295	1	71077
223	35.6	14.2	2.9	chr1	36527938	36528212	(212428210)	C	L3	LINE/CR1	(981)	3118	2808	71070
2958	11.5	3.3	1.9	chr1	42822492	42822969	(206133453)	C	L1MA5A	LINE/L1	(5)	6292	5808	83228
4939	17.3	7.5	3.0	chr1	42822970	42824001	(206132421)	C	Charlie1a	DNA/hAT-Charlie	(285)	1170	1	83225
2139	18.3	5.8	0.8	chr1	56409953	56410427	(192545995)	C	Charlie1a	DNA/hAT-Charlie	(30)	1425	926	108760
637	15.6	1.6	2.4	chr1	56410427	56410551	(192545871)	C	Charlie1a	DNA/hAT-Charlie	(775)	680	557	108760
586	31.8	3.2	7.4	chr1	63663227	63663522	(185292900)	+	L2b	LINE/L2	3093	3375	(0)	122440
2762	26.8	7.4	2.4	chr1	85559221	85560659	(163395763)	+	L1MEf	LINE/L1	588	2144	(4271)	154361
2005	10.7	0.4	0.0	chr1	112939541	112939803	(136016619)	C	AluSx	SINE/Alu	(47)	265	2	194094
279	19.7	4.1	0.0	chr1	112939804	112939874	(136016548)	+	Arthur1B	DNA/hAT-Tip100	1057	1130	(95)	194095
14	11.7	0.0	3.3	chr1	112939876	112939905	(136016517)	+	(CCCTC)n	Simple_repeat	1	30	(0)	194096
657	13.2	5.6	5.6	chr1	112939947	112940039	(136016383)	C	Charlie1a	DNA/hAT-Charlie	(393)	1062	970	194097
1570	15.4	4.3	1.8	chr1	112940040	112940339	(136016083)	C	AluJb	SINE/Alu	(0)	312	2	194098
2763	21.0	5.5	0.3	chr1	113565506	113566108	(135390314)	+	MER99	DNA/hAT?	193	828	(3)	195203
1273	10.3	0.0	0.6	chr1	144412576	144412741	(104543681)	+	U1	snRNA	1	165	(0)	209362
59	9.6	1.1	0.0	chr1	155244786	155244875	(93711547)	+	(GAGA)n	Simple_repeat	1	91	(0)	227608
1688	4.9	0.0	3.5	chr1	169550129	169550359	(79406063)	C	L1PA5	LINE/L1	(0)	6154	5932	250097
2650	28.4	5.8	3.3	chr1	177744684	177745823	(71210599)	+	L2a	LINE/L2	2026	3209	(217)	262023
1293	17.3	2.5	0.5	chr1	200487655	200487851	(48468571)	+	AluJb	SINE/Alu	87	287	(25)	294354
16	5.2	0.0	0.0	chr1	200487852	200487871	(48468551)	+	(GA)n	Simple_repeat	1	20	(0)	294355
28	0.0	0.0	0.0	chr1	200487873	200487899	(48468523)	+	(G)n	Simple_repeat	1	27	(0)	294356
39	2.7	0.0	0.0	chr1	200487903	200487940	(48468482)	+	(GA)n	Simple_repeat	1	38	(0)	294357
479	27.2	12.9	5.7	chr1	200487956	200488023	(48468399)	C	L2a	LINE/L2	(142)	3284	3217	294352
2154	24.9	14.4	3.9	chr1	219216090	219217019	(29739403)	C	L1MEc	LINE/L1	(5325)	1075	32	324303
372	23.9	9.6	1.6	chr1	227236584	227236766	(21719656)	C	L1ME3B	LINE/L1	(27)	6215	6017	337138
1794	16.0	8.2	0.0	chr1	227236786	227237066	(21719356)	+	AluJb	SINE/Alu	1	306	(6)	337139
249	24.1	2.4	1.7	chr1	227909321	227909995	(21046427)	+	GA-rich	Low_complexity	1	691	(0)	338039
83	16.5	3.8	5.3	chr1	232635351	232635586	(16320836)	+	GA-rich	Low_complexity	1	245	(0)	345185
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
13	10.9	0.0	8.3	chr10	7504801	7504836	(126292586)	+	A-rich	Low_complexity	1	36	(0)	381134
139	25.0	0.3	0.9	chr10	7505247	7505588	(126291834)	+	(CCT)n	Simple_repeat	1	339	(0)	381135
330	25.3	18.2	1.8	chr10	22351646	22351810	(111445612)	+	L4_C_Mam	LINE/RTE-X	4158	4355	(783)	405137
318	21.4	1.4	0.0	chr10	100020605	100020674	(33776748)	C	MamSINE1	SINE/tRNA-RTE	(147)	143	73	522543
12	7.7	3.2	6.2	chr10	102450116	102450146	(31347276)	+	GA-rich	Low_complexity	1	32	(0)	526949
1681	13.0	2.8	0.0	chr10	112858526	112858771	(20938651)	+	AluSx1	SINE/Alu	45	297	(15)	543324
257	20.9	6.2	3.2	chr10	112858774	112858867	(20938555)	+	LTR85a	LTR/Gypsy?	601	697	(5)	543325
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
259	12.1	2.8	3.5	chr11	11246866	11247010	(123839612)	C	HERV17-int	LTR/ERV1	(7779)	847	704	588885
84	25.4	0.5	0.9	chr11	11247018	11247230	(123839392)	+	(TC)n	Simple_repeat	1	214	(0)	588886
836	14.0	0.0	3.7	chr11	61889714	61889849	(73196773)	+	FLAM_C	SINE/Alu	1	131	(12)	661016
15	20.1	2.9	0.0	chr11	61889987	61890020	(73196602)	+	(CA)n	Simple_repeat	1	35	(0)	661017
1069	23.6	13.1	5.9	chr11	70371122	70371431	(64715191)	C	L1MD	LINE/L1	(3227)	2919	2548	676745
616	22.2	3.5	4.0	chr11	70371541	70371742	(64714880)	C	L1M4	LINE/L1	(3463)	2683	2483	676741
280	33.6	6.1	0.0	chr12	2255710	2255816	(131019493)	C	L2b	LINE/L2	(6)	3369	3256	781930
2517	26.0	4.3	9.2	chr12	2471979	2472836	(130802473)	C	L1MEf	LINE/L1	(4835)	1365	575	782262
2979	10.5	1.1	0.0	chr12	21026938	21027375	(112247934)	+	L1PA10	LINE/L1	5724	6166	(2)	810330
10202	16.2	2.6	5.3	chr12	21027376	21029237	(112246072)	+	Tigger2	DNA/TcMar-Tigger	912	2718	(0)	810329
1217	16.7	0.6	0.6	chr12	37687762	37712760	(95562549)	C	ALR/Alpha	Satellite/centr	(27)	24996	1	830537
236	32.3	4.1	3.1	chr12	40715998	40716093	(92559216)	C	MIRb	SINE/MIR	(8)	260	164	834081
48	23.5	3.9	4.8	chr12	40716219	40716416	(92558893)	+	(CTC)n	Simple_repeat	1	196	(0)	834082
212	34.7	2.0	5.1	chr12	41236511	41236668	(92038641)	C	L2	LINE/L2	(627)	2792	2640	834785
2265	10.9	0.0	3.5	chr12	82778879	82779056	(50496253)	+	AluSc8	SINE/Alu	134	301	(10)	898242
276	34.6	2.7	4.1	chr12	82779068	82779275	(50496034)	C	L2b	LINE/L2	(263)	3124	2922	898244
1619	16.7	6.8	1.7	chr12	106734781	106735073	(26540236)	+	AluJr	SINE/Alu	2	310	(2)	936748
264	28.6	0.1	0.4	chr13	35957907	35958600	(78405728)	+	(CAC)n	Simple_repeat	1	695	(0)	1017863
5212	20.3	8.7	3.5	chr13	41007791	41008958	(73355370)	+	Charlie1a	DNA/hAT-Charlie	1	1249	(206)	1025067
727	19.5	0.8	2.3	chr13	41008959	41009086	(73355242)	C	FLAM_A	SINE/Alu	(16)	126	1	1025068
5212	20.3	8.7	3.5	chr13	41009087	41009288	(73355040)	+	Charlie1a	DNA/hAT-Charlie	1250	1449	(6)	1025067
582	16.4	5.3	2.5	chr14	24696040	24697528	(82346190)	+	(AGTG)n	Simple_repeat	1	1568	(0)	1134547
343	19.7	1.4	0.0	chr14	32927083	32927153	(74116565)	+	Charlie1b	DNA/hAT-Charlie	46	117	(406)	1145765
1122	15.9	0.0	0.0	chr14	32927162	32927324	(74116394)	+	AluJr	SINE/Alu	129	291	(21)	1145766
1212	20.1	9.6	2.6	chr14	32927347	32927880	(74115838)	+	Charlie1a	DNA/hAT-Charlie	878	1312	(143)	1145767
3495	21.9	6.0	2.5	chr14	66653363	66654150	(40389568)	C	L1MD1	LINE/L1	(0)	6633	5830	1194889
1433	12.0	18.6	0.0	chr14	66654151	66654391	(40389327)	C	AluSz	SINE/Alu	(13)	299	4	1194890
11597	20.0	5.8	1.8	chr14	66654392	66656469	(40387249)	C	L1MD1	LINE/L1	(804)	5829	3672	1194889
135	1.6	0.8	0.0	chr14	77269669	77269795	(29773923)	+	(TC)n	Simple_repeat	1	128	(0)	1213918
25	0.0	0.0	0.0	chr14	77269796	77269822	(29773896)	+	(C)n	Simple_repeat	1	27	(0)	1213919
529	28.8	2.5	2.5	chr14	77269823	77269979	(29773739)	C	MIR	SINE/MIR	(43)	219	63	1213920
2306	12.1	11.2	0.5	chr14	95000315	95000695	(12043023)	C	MSTA	LTR/ERVL-MaLR	(0)	428	2	1242282
311	31.9	2.5	0.8	chr14	99983330	99983449	(7060269)	C	L4_C_Mam	LINE/RTE-X	(177)	4961	4840	1250957
178	28.4	1.7	2.3	chr15	100709991	100710622	(1280567)	+	(GTGGAG)n	Simple_repeat	1	643	(0)	1391836
198	25.0	6.4	7.4	chr16	1092180	1092274	(89246071)	+	L2b	LINE/L2	3263	3356	(19)	1395493
1139	16.3	14.3	0.0	chr16	3499752	3499997	(86838348)	+	LTR54B	LTR/ERV1	2	288	(210)	1399283
449	16.1	5.1	0.0	chr16	3500001	3500093	(86838252)	+	LTR54B	LTR/ERV1	293	390	(108)	1399284
2481	6.9	0.3	0.3	chr16	3500367	3500670	(86837675)	C	AluSz	SINE/Alu	(8)	304	1	1399285
256	26.5	11.7	1.2	chr16	8797254	8797337	(81541008)	+	MIRb	SINE/MIR	60	153	(115)	1409896
218	28.0	12.7	0.0	chr16	25759958	25760081	(64578264)	C	MIRc	SINE/MIR	(85)	183	24	1447651
56	1.9	0.0	0.0	chr16	25760102	25760156	(64578189)	+	(CCCTAA)n	Simple_repeat	1	55	(0)	1447654
1878	15.6	1.1	6.7	chr16	25760191	25760423	(64577922)	C	MLT1B	LTR/ERVL-MaLR	(40)	350	123	1447655
236	29.3	8.6	2.7	chr16	31287947	31288132	(59050213)	C	L2c	LINE/L2	(116)	3271	3074	1460037
235	23.1	0.0	1.9	chr16	31288229	31288281	(59050064)	+	L1MC	LINE/L1	3797	3848	(2298)	1460038
7612	6.3	1.1	0.1	chr16	31288262	31289766	(59048579)	+	L1PA5	LINE/L1	4598	6152	(2)	1460039
2357	5.0	5.4	2.5	chr16	33335927	33340033	(56998312)	+	(TGGCTTGGC)n	Simple_repeat	1	4327	(0)	1462585
888	6.7	4.2	0.7	chr16	33340034	33340155	(56998190)	C	LTR13A	LTR/ERVK	(840)	126	1	1462584
377	20.6	0.0	0.0	chr16	34063794	34063861	(56274484)	+	AluYj4	SINE/Alu	224	291	(20)	1463563
330	24.4	1.2	2.4	chr16	34071698	34071779	(56266566)	+	AluJb	SINE/Alu	208	288	(24)	1463578
861	27.1	10.8	2.4	chr16	68761435	68761774	(21576571)	C	L2a	LINE/L2	(0)	3426	3055	1504279
218	22.6	24.3	1.2	chr16	68761768	68761928	(21576417)	C	L2a	LINE/L2	(337)	3082	2873	1504279
4867	19.2	11.1	1.9	chr17	19802268	19803579	(63453862)	C	Charlie1	DNA/hAT-Charlie	(6)	2775	1448	1581284
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
2660	16.1	6.5	3.4	chr17	42400084	42400615	(40856826)	+	Ricksha_c	DNA/MULE-MuDR	355	904	(1144)	1615555
2363	27.8	12.0	4.6	chr17	60272511	60272963	(22984478)	+	L1MEc	LINE/L1	20	497	(5903)	1648902
2082	13.7	0.0	2.6	chr17	60272964	60273276	(22984165)	C	AluSz6	SINE/Alu	(7)	305	1	1648903
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
890	23.5	2.3	2.7	chr18	24709284	24709502	(55663783)	C	MER20	DNA/hAT-Charlie	(0)	219	2	1718375
2199	9.7	0.4	0.0	chr18	24709615	24709893	(55663392)	C	AluSz	SINE/Alu	(0)	312	33	1718376
1629	19.8	5.8	0.0	chr18	38565247	38565570	(41807715)	C	MER2	DNA/TcMar-Tigger	(0)	345	2	1737558
220	35.5	8.9	4.2	chr18	38565571	38565624	(41807661)	+	MIRb	SINE/MIR	203	257	(11)	1737557
17	4.3	0.0	0.0	chr18	38565638	38565661	(41807624)	+	(GCTT)n	Simple_repeat	1	24	(0)	1737559
282	37.7	4.8	3.4	chr18	47383185	47383453	(32989832)	C	MamTip2	DNA/hAT-Tip100	(1)	304	32	1750105
26	31.8	1.0	2.1	chr18	47383508	47383603	(32989682)	+	(CCTC)n	Simple_repeat	1	97	(0)	1750106
28122	17.0	7.8	7.8	chr18	52790112	52792754	(27580531)	C	HUERS-P3b-int	LTR/ERV1	(7)	2901	90	1758952
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
251	28.4	0.8	0.3	chr19	4197343	4198009	(54419607)	+	(AATG)n	Simple_repeat	1	672	(0)	1805012
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
676	21.2	4.3	12.9	chr2	161278581	161278835	(80914694)	C	L1MB8	LINE/L1	(108)	6070	5839	2144203
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
2002	20.6	5.6	4.1	chr2	217414390	217414808	(24778721)	C	MSTB	LTR/ERVL-MaLR	(0)	426	1	2224370
5991	24.1	6.6	7.4	chr2	217414809	217417297	(24776232)	+	L1ME1	LINE/L1	3415	5896	(283)	2224369
2781	21.0	9.0	2.1	chr2	220974829	220976014	(21217515)	C	Charlie1a	DNA/hAT-Charlie	(179)	1276	1	2230341
1159	13.1	0.5	0.0	chr20	30519545	30520660	(33923507)	C	ACRO1	Satellite/acro	(55)	1121	1	2305115
966	20.7	3.4	16.2	chr20	57861419	57861689	(6582478)	C	MER8	DNA/TcMar-Tigger	(3)	236	2	2361952
2258	15.9	11.5	2.0	chr20	57861690	57861900	(6582267)	C	Charlie1a	DNA/hAT-Charlie	(401)	1054	838	2361951
300	30.4	0.0	1.2	chr20	57861892	57861971	(6582196)	C	Charlie1	DNA/hAT-Charlie	(2702)	79	1	2361953
290	33.7	12.4	0.0	chr20	57861994	57862162	(6582005)	+	MIR	SINE/MIR	70	262	(0)	2361954
4097	22.1	7.3	2.0	chr20	58704350	58705523	(5738644)	C	Charlie1a	DNA/hAT-Charlie	(1)	1454	214	2363363
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
797	22.4	0.5	0.1	chr21	8228115	8229742	(38480241)	+	(TCTC)n	Simple_repeat	1	1633	(0)	2373325
312	38.2	6.5	3.6	chr21	8419786	8420171	(38289812)	C	HAL1	LINE/L1	(1230)	1277	880	2373573
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8464121	8465014	(38244969)	+	(CTCT)n	Simple_repeat	1	897	(0)	2373686
53	2.0	0.0	0.0	chr21	8465015	8465064	(38244919)	+	(GT)n	Simple_repeat	1	50	(0)	2373687
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
436	12.7	0.0	0.0	chr21	9246781	9246835	(37463148)	+	AluYj4	SINE/Alu	225	279	(32)	2374338
404	15.6	1.5	0.0	chr21	9247151	9247214	(37462769)	+	AluYj4	SINE/Alu	224	288	(23)	2374339
592	20.2	0.0	0.0	chr21	9528125	9528248	(37181735)	+	L1M2	LINE/L1	5196	5319	(824)	2374487
6617	21.7	6.3	7.6	chr21	9528249	9530892	(37179091)	+	REP522	Satellite/telo	1	2611	(1251)	2374489
398	8.6	0.2	0.0	chr21	10426491	10427038	(36282945)	+	(GTGGTG)n	Simple_repeat	1	549	(0)	2375540
404	28.3	11.0	2.7	chr21	10427070	10427382	(36282601)	C	L2c	LINE/L2	(213)	3174	2827	2375541
25	15.4	0.0	0.0	chr21	10427515	10427557	(36282426)	+	(CA)n	Simple_repeat	1	43	(0)	2375542
1432	29.9	13.4	5.2	chr21	18862046	18863064	(27846919)	+	L2	LINE/L2	1700	2815	(604)	2383571
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
44	0.0	2.3	0.0	chr22	34686558	34686601	(16131867)	+	(TGTTT)n	Simple_repeat	1	45	(0)	2461474
2430	5.6	0.0	0.3	chr22	36061217	36061504	(14756964)	+	AluYf1	SINE/Alu	18	304	(7)	2464266
3993	17.5	3.0	7.6	chr22	36061505	36061918	(14756550)	+	Charlie1a	DNA/hAT-Charlie	882	1290	(165)	2464265
2162	14.3	0.0	0.0	chr22	36061919	36062226	(14756242)	C	AluSx1	SINE/Alu	(4)	308	1	2464267
405	13.0	7.8	3.1	chr22	49972792	49973865	(844603)	+	(GT)n	Simple_repeat	1	1123	(0)	2490010
1631	15.9	6.6	9.7	chr3	51583070	51583416	(146712143)	C	Charlie1a	DNA/hAT-Charlie	(144)	1311	976	2574652
2262	9.3	1.9	2.3	chr3	51583417	51583726	(146711833)	C	AluSp	SINE/Alu	(4)	309	1	2574653
1989	11.9	0.0	1.3	chr3	103691378	103691691	(94603868)	+	HERVL-int	LTR/ERVL	5345	5654	(0)	2646120
2456	14.5	4.2	5.0	chr3	103691692	103692148	(94603411)	+	MLT2A2	LTR/ERVL	1	453	(0)	2646120
1530	26.7	5.8	2.2	chr3	158416247	158416760	(39878799)	+	MLT1G3	LTR/ERVL-MaLR	1	580	(15)	2726768
5083	20.0	8.9	6.3	chr4	7873648	7874350	(182340205)	+	Charlie1a	DNA/hAT-Charlie	330	1076	(379)	2800817
2008	11.2	4.6	0.0	chr4	7874351	7874530	(182340025)	C	AluY	SINE/Alu	(0)	311	133	2800820
863	17.6	1.2	0.2	chr4	49090455	49091234	(141123321)	+	ALR/Alpha	Satellite/centr	1	788	(0)	2864886
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
1816	14.2	5.8	0.7	chr4	82190541	82190835	(108023720)	+	AluSx3	SINE/Alu	1	311	(0)	2907216
2445	7.3	1.0	0.0	chr4	108684771	108685071	(81529484)	C	AluSx1	SINE/Alu	(8)	304	1	2943885
2074	31.7	9.2	13.5	chr4	136514646	136516649	(53697906)	C	L2b	LINE/L2	(1429)	1990	81	2980581
302	29.6	5.1	4.5	chr4	136516654	136516985	(53697570)	+	HAL1ME	LINE/L1	931	1264	(1201)	2980584
438	29.1	11.3	0.0	chr4	153129084	153129255	(37085300)	+	MIRb	SINE/MIR	66	259	(9)	3004065
618	15.6	0.8	0.0	chr4	153129256	153130310	(37084245)	+	(CAC)n	Simple_repeat	1	1064	(0)	3004066
9425	27.5	6.3	3.6	chr4	169340852	169343523	(20871032)	C	HERVL40-int	LTR/ERVL	(1806)	3724	993	3026180
543	5.4	1.2	0.9	chr4	190122449	190123118	(91437)	+	(AGGGTT)n	Simple_repeat	1	678	(0)	3054644
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
10205	21.4	4.4	5.1	chr5	8935481	8937741	(172600518)	+	L1PA13	LINE/L1	574	2788	(3997)	3064943
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
3075	17.4	3.1	1.4	chr6	33986275	33986908	(136819071)	C	Charlie1a	DNA/hAT-Charlie	(0)	1455	811	3367417
3332	19.5	2.1	1.7	chr6	33986910	33987612	(136818367)	C	Charlie1a	DNA/hAT-Charlie	(746)	709	4	3367417
244	31.8	11.3	2.3	chr6	90612056	90612184	(80193795)	C	MIR3	SINE/MIR	(21)	187	46	3446641
68	0.0	0.0	0.0	chr6	111568433	111568490	(59237489)	+	(GT)n	Simple_repeat	1	58	(0)	3475844
488	11.9	1.5	0.0	chr6	111568636	111568702	(59237277)	+	AluSz	SINE/Alu	1	68	(244)	3475845
13	15.7	9.3	0.0	chr6	111568709	111568751	(59237228)	+	(ATCCATG)n	Simple_repeat	1	47	(0)	3475846
626	32.9	7.2	1.5	chr6	165161480	165161818	(5644161)	+	LTR16A1	LTR/ERVL	49	408	(48)	3551629
237	18.1	7.9	1.7	chr6	167337759	167338478	(3467501)	+	(AC)n	Simple_repeat	1	777	(0)	3554302
519	26.6	1.1	7.9	chr7	4083082	4083317	(155262656)	C	L1MA10	LINE/L1	(8)	6326	5945	3564225
399	31.4	2.9	0.6	chr7	4083322	4083491	(155262482)	C	L1MC5a	LINE/L1	(427)	2350	2177	3564223
38	0.0	0.0	0.0	chr7	4083525	4083559	(155262414)	+	(CCTC)n	Simple_repeat	1	35	(0)	3564226
112	24.9	0.7	1.7	chr7	4083573	4083862	(155262111)	+	(CCTC)n	Simple_repeat	1	292	(0)	3564226
94	10.7	1.1	1.1	chr7	57495470	57495644	(101850329)	+	(GGAAT)n	Simple_repeat	1	177	(0)	3642547
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
288	23.1	1.2	1.9	chr7	65488938	65489682	(93856291)	+	(ATTCC)n	Simple_repeat	1	754	(0)	3647900
351	16.1	3.1	0.0	chr7	65489683	65489744	(93856229)	C	AluYj4	SINE/Alu	(22)	289	226	3647901
84	11.5	0.0	0.0	chr7	65489745	65489886	(93856087)	+	(CCATT)n	Simple_repeat	1	142	(0)	3647902
383	14.3	3.1	0.0	chr7	65489887	65489949	(93856024)	C	AluYj4	SINE/Alu	(22)	289	225	3647903
85	11.3	0.7	0.6	chr7	65489965	65490119	(93855854)	+	(TTCCA)n	Simple_repeat	1	156	(0)	3647904
400	10.8	0.2	2.5	chr7	98810993	98811637	(60534336)	+	(TGG)n	Simple_repeat	1	646	(0)	3703453
431	29.0	3.7	9.8	chr7	107077707	107077909	(52268064)	+	MIRb	SINE/MIR	23	212	(56)	3718567
526	33.3	1.8	6.7	chr7	118010299	118010391	(41335582)	C	MIR	SINE/MIR	(14)	248	157	3733329
2078	16.6	8.2	0.8	chr7	118010392	118010785	(41335188)	C	MSTB	LTR/ERVL-MaLR	(0)	426	1	3733330
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
297	33.0	10.1	3.2	chr8	134487327	134487533	(10651103)	C	MIRc	SINE/MIR	(28)	240	22	3992396
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
235	23.8	4.5	3.8	chr9	63823016	63823908	(74570809)	+	(CA)n	Simple_repeat	1	933	(0)	4074777
268	8.8	1.9	1.9	chr9	70038166	70038638	(68356079)	+	(TGGAA)n	Simple_repeat	1	482	(0)	4082515
253	26.1	0.0	0.0	chr9	70038639	70038703	(68356014)	+	MER102a	DNA/hAT-Charlie	90	154	(176)	4082516
296	26.2	1.9	3.7	chr9	70038730	70038836	(68355881)	+	MER102c	DNA/hAT-Charlie	201	305	(26)	4082517
2199	13.4	5.5	6.7	chr9	82015187	82015592	(56379125)	+	MSTA	LTR/ERVL-MaLR	1	401	(27)	4100910
6852	2.9	0.1	0.0	chr9	82015594	82016399	(56378318)	C	L1PA4	LINE/L1	(1)	6154	5348	4100911
243	4.6	0.0	2.1	chr9	137355408	137355734	(1038983)	+	(GAGGAAG)n	Simple_repeat	1	327	(0)	4195528
55704	5.4	1.1	0.9	chrX	48854173	48856604	(107184291)	+	Harlequin-int	LTR/ERV1	1	2443	(4453)	4436977
233	40.0	0.0	0.0	chrX	117087449	117087553	(38953342)	C	L2	LINE/L2	(968)	2451	2347	4517332
1699	25.2	9.9	4.7	chrX	117087565	117088156	(38952739)	+	L1MD1	LINE/L1	414	1039	(5370)	4517333
1674	24.4	5.5	1.7	chrX	117610825	117611291	(38429604)	+	MLT1E2	LTR/ERVL-MaLR	141	626	(1)	4517937
297	24.6	0.0	0.0	chrY	10627178	10627242	(46600173)	C	AluJo	SINE/Alu	(20)	292	228	4587825
890	21.9	0.8	0.9	chrY	10627274	10627798	(46599617)	+	(CCATT)n	Simple_repeat	3	528	(0)	4587826
275	20.9	4.3	0.0	chrY	10664501	10664567	(46562848)	C	Alu	SINE/Alu	(8)	293	224	4587924
149	10.5	1.4	1.4	chrY	10664579	10664856	(46562559)	+	(CCATT)n	Simple_repeat	1	282	(0)	4587925
6112	24.5	0.6	0.4	chrY	10939178	10940587	(46286828)	+	(TTCCA)n	Simple_repeat	5	1415	(0)	4588487
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638
10957	28.1	0.5	0.1	chrY	26643208	26653351	(30574064)	+	(AATGG)n	Simple_repeat	1	10181	(0)	4607159
10957	28.2	0.5	0.1	chrY	26653859	26659290	(30568125)	+	(AATGG)n	Simple_repeat	5	5454	(0)	4607165