235	23.9	13.2	2.1	chr1	24696336	24696429	(224259993)	+	L2b	LINE/L2	3246	3351	(24)	45491
241	24.2	14.9	10.8	chr1	32712574	32712698	(216243724)	+	MIRb	SINE/MIR	3	135	(133)	63557
23	5.7	2.6	2.5	chr1	59297041	59297079	(189659343)	+	(CCT)n	Simple_repeat	1	40	(0)	114621
308	37.1	8.9	4.2	chr1	70537142	70537546	(178418876)	+	MLT1N2	LTR/ERVL-MaLR	85	510	(52)	133609
3027	1.0	0.0	0.0	chr1	143842917	143843219	(105113203)	C	AluYa5	SINE/Alu	(8)	303	1	208416
2597	8.4	5.0	1.9	chr1	144101293	144106919	(104849503)	+	(TGGCTGGCT)n	Simple_repeat	1	5911	(0)	208844
1293	17.3	2.5	0.5	chr1	200487655	200487851	(48468571)	+	AluJb	SINE/Alu	87	287	(25)	294354
16	5.2	0.0	0.0	chr1	200487852	200487871	(48468551)	+	(GA)n	Simple_repeat	1	20	(0)	294355
28	0.0	0.0	0.0	chr1	200487873	200487899	(48468523)	+	(G)n	Simple_repeat	1	27	(0)	294356
39	2.7	0.0	0.0	chr1	200487903	200487940	(48468482)	+	(GA)n	Simple_repeat	1	38	(0)	294357
479	27.2	12.9	5.7	chr1	200487956	200488023	(48468399)	C	L2a	LINE/L2	(142)	3284	3217	294352
1177	25.4	11.5	6.1	chr1	210653547	210653741	(38302681)	+	L1ME4b	LINE/L1	689	882	(10)	311473
40	29.6	0.0	0.0	chr1	228635559	228635667	(20320755)	+	(CA)n	Simple_repeat	1	109	(0)	338951
63	31.5	1.7	0.8	chr1	228635679	228635919	(20320503)	+	GA-rich	Low_complexity	1	245	(0)	338952
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
4538	22.4	7.9	2.4	chr1	236365604	236366794	(12589628)	C	L1MEc	LINE/L1	(4983)	1417	143	351479
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
2543	6.6	1.9	0.0	chr11	912563	912867	(134173755)	+	AluY	SINE/Alu	1	311	(0)	574082
16	23.5	0.0	0.0	chr11	63682323	63682357	(71404265)	+	(T)n	Simple_repeat	1	35	(0)	664164
12	18.9	8.0	1.9	chr11	64304672	64304721	(70781901)	+	(GACCCA)n	Simple_repeat	1	54	(0)	665353
26226	2.5	0.4	0.0	chr11	94232525	94238528	(40848094)	C	L1PA2	LINE/L1	(3)	6152	124	716864
280	33.6	6.1	0.0	chr12	2255710	2255816	(131019493)	C	L2b	LINE/L2	(6)	3369	3256	781930
327	34.1	1.5	0.8	chr12	2256139	2256271	(131019038)	+	MER5A	DNA/hAT-Charlie	51	184	(5)	781931
16	23.6	2.2	0.0	chr12	6555467	6555524	(126719785)	+	GA-rich	Low_complexity	1	59	(0)	788935
241	31.9	0.8	0.8	chr12	17097512	17097631	(116177678)	C	MLT1J-int	LTR/ERVL-MaLR	(653)	734	615	805100
237	37.0	2.8	1.4	chr12	17097913	17098052	(116177257)	C	MLT1J-int	LTR/ERVL-MaLR	(876)	511	370	805100
13	4.7	0.0	4.2	chr13	51928268	51928291	(62436037)	+	(GTTT)n	Simple_repeat	1	24	(0)	1042320
611	27.3	0.0	0.7	chr13	51928341	51928484	(62435844)	C	MIR	SINE/MIR	(8)	254	112	1042321
2815	15.2	0.6	3.1	chr15	71747410	71747892	(30243297)	C	LTR44	LTR/ERV1	(0)	519	49	1344284
2091	13.4	0.9	1.2	chr15	71747897	71748220	(30242969)	C	MER49	LTR/ERV1	(600)	323	1	1344285
2172	10.0	3.6	0.0	chr15	74905423	74905712	(27085477)	C	AluSx1	SINE/Alu	(11)	301	1	1349731
244	23.7	10.3	2.2	chr15	74905843	74905931	(27085258)	+	MIR3	SINE/MIR	99	203	(5)	1349732
317	31.7	0.8	1.6	chr15	96264676	96264800	(5726389)	+	MER5A	DNA/hAT-Charlie	37	160	(29)	1385636
2357	5.0	5.4	2.5	chr16	33335927	33340033	(56998312)	+	(TGGCTTGGC)n	Simple_repeat	1	4327	(0)	1462585
316	25.0	0.0	0.0	chr16	34062726	34062789	(56275556)	+	AluYa8	SINE/Alu	223	286	(24)	1463558
390	15.6	3.0	0.0	chr16	34062893	34062956	(56275389)	+	AluYj4	SINE/Alu	224	289	(22)	1463559
330	24.4	1.2	2.4	chr16	34071698	34071779	(56266566)	+	AluJb	SINE/Alu	208	288	(24)	1463578
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
446	20.2	5.3	2.4	chr17	30970446	30970572	(52286869)	+	MER5B	DNA/hAT-Charlie	9	139	(39)	1593736
993	4.0	0.0	0.0	chr17	32822870	32822994	(50434447)	+	L1PA5	LINE/L1	6030	6154	(0)	1597471
121	22.7	0.4	8.2	chr17	80929972	80930312	(2327129)	+	(CTCAG)n	Simple_repeat	1	313	(0)	1685673
32	10.5	0.0	6.5	chr17	80930313	80930405	(2327036)	+	(CAGCT)n	Simple_repeat	1	93	(0)	1685674
121	22.7	0.4	8.2	chr17	80930406	80930537	(2326904)	+	(CTCAG)n	Simple_repeat	4	127	(0)	1685675
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
200	2.8	7.2	2.7	chr18	4510685	4511029	(75862256)	+	(GTG)n	Simple_repeat	1	370	(0)	1696090
28122	17.0	7.8	7.8	chr18	52790112	52792754	(27580531)	C	HUERS-P3b-int	LTR/ERV1	(7)	2901	90	1758952
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
20	27.2	6.5	0.9	chr19	6430205	6430248	(52187368)	+	(TCCCCA)n	Simple_repeat	1	72	(42)	1810215
180	29.3	10.9	0.0	chr19	35870370	35870451	(22747165)	+	OldhAT1	DNA/hAT-Ac	373	464	(2384)	1861340
2432	9.9	0.0	0.0	chr19	35870502	35870813	(22746803)	+	AluSq2	SINE/Alu	1	312	(1)	1861341
1021	26.9	3.1	3.8	chr2	8484246	8484670	(233708859)	C	L1ME4a	LINE/L1	(153)	5971	5550	1921454
13	15.3	2.5	4.9	chr2	20614886	20614925	(221578604)	+	(CCAGGAG)n	Simple_repeat	1	41	(0)	1940641
117	25.1	1.3	1.9	chr2	32915873	32916183	(209277346)	+	(CTCC)n	Simple_repeat	1	315	(0)	1961188
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
12	7.4	10.3	0.0	chr2	85611846	85611874	(156581655)	+	(GGC)n	Simple_repeat	1	32	(0)	2041125
16	14.2	0.0	0.0	chr2	85612145	85612175	(156581354)	+	(TCGGG)n	Simple_repeat	1	31	(0)	2041126
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
21	8.8	2.8	0.0	chr2	91478098	91478133	(150715396)	+	(CCG)n	Simple_repeat	1	37	(0)	2048369
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
2860	28.3	4.9	5.5	chr20	30283322	30285229	(34158938)	+	SST1	Satellite/centr	1	1895	(14)	2304820
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
797	22.4	0.5	0.1	chr21	8229975	8230765	(38479218)	+	(TCTC)n	Simple_repeat	2	795	(0)	2373327
446	20.9	0.1	6.5	chr21	8230776	8230919	(38479064)	+	MER39B	LTR/ERV1	298	454	(253)	2373328
24	15.5	7.0	0.0	chr21	8401981	8402037	(38307946)	+	(CG)n	Simple_repeat	1	61	(0)	2373511
14	13.3	9.8	0.0	chr21	8402028	8402068	(38307915)	+	(CGTC)n	Simple_repeat	1	45	(0)	2373512
312	38.2	6.5	3.6	chr21	8419786	8420171	(38289812)	C	HAL1	LINE/L1	(1230)	1277	880	2373573
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
12	20.8	0.0	2.9	chr21	8434102	8434136	(38275847)	+	(CCG)n	Simple_repeat	1	35	(0)	2373611
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
1562	29.8	5.6	6.5	chr21	9817901	9819192	(36890791)	C	SST1	Satellite/centr	(1)	1562	284	2374896
20	28.0	1.7	0.0	chr21	9819212	9819271	(36890712)	+	GA-rich	Low_complexity	1	61	(0)	2374897
1996	29.3	5.0	5.8	chr21	9819321	9820600	(36889383)	C	SST1	Satellite/centr	(11)	1552	284	2374899
3733	5.1	0.8	0.0	chr21	10269869	10270342	(36439641)	+	HSATI	Satellite	90	567	(10)	2375347
1732	14.4	0.0	5.1	chr21	10270343	10270634	(36439349)	+	AluSc8	SINE/Alu	13	289	(22)	2375348
4607	4.8	0.0	0.0	chr21	10271643	10272208	(36437775)	+	HSATI	Satellite	2	567	(10)	2375350
1723	14.4	0.0	5.1	chr21	10272209	10272500	(36437483)	+	AluSx3	SINE/Alu	13	289	(22)	2375351
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
530	23.4	6.1	1.9	chr22	11572555	11572711	(39245757)	+	MIRb	SINE/MIR	33	196	(72)	2425189
194	23.1	0.0	1.9	chr22	11817844	11817896	(39000572)	C	MER5A	DNA/hAT-Charlie	(20)	169	118	2425392
590	21.9	0.2	0.0	chr22	11818875	11819136	(38999332)	+	ACRO1	Satellite/acro	1	262	(0)	2425395
1124	22.8	3.2	0.8	chr22	11900617	11900862	(38917606)	C	AluJr	SINE/Alu	(48)	264	13	2425511
3058	20.8	2.7	1.3	chr22	11900876	11902001	(38916467)	C	L1MA5	LINE/L1	(354)	5946	4805	2425510
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
2583	9.9	0.0	0.0	chr22	33122346	33122658	(17695810)	C	AluSq2	SINE/Alu	(0)	313	1	2458441
6832	15.2	4.5	2.9	chr22	33122659	33123609	(17694859)	C	MER66-int	LTR/ERV1	(4512)	2164	1210	2458440
8677	19.5	1.7	2.1	chr3	19074068	19075708	(179219851)	+	MSTB-int	LTR/ERVL-MaLR	1	1634	(17)	2524178
1987	28.5	4.8	6.5	chr3	46078834	46080098	(152215461)	+	ERV24_Prim-int	LTR/ERV1	608	1828	(5785)	2564871
505	26.4	16.5	2.4	chr3	64229885	64230246	(134065313)	C	MLT1J1	LTR/ERVL-MaLR	(24)	420	1	2595353
320	21.9	0.0	9.6	chr3	75668819	75668954	(122626605)	C	LSAU	Satellite	(374)	124	2	2614560
763	18.4	9.4	0.6	chr3	94082248	94082411	(104213148)	+	MER5A	DNA/hAT-Charlie	9	188	(1)	2633794
887	22.4	14.7	1.4	chr3	94082414	94082689	(104212870)	+	Helitron3Na_Mam	RC/Helitron	168	486	(0)	2633795
2295	13.4	0.0	0.0	chr3	142554954	142555266	(55740293)	+	AluSq2	SINE/Alu	1	313	(0)	2704297
281	34.3	11.7	1.6	chr3	171142177	171142360	(27153199)	C	L2	LINE/L2	(555)	2864	2660	2744086
71	1.6	0.0	0.0	chr4	4912046	4912110	(185302445)	+	(AC)n	Simple_repeat	1	65	(0)	2795697
1494	17.9	7.7	1.5	chr4	4912111	4912260	(185302295)	+	AluJo	SINE/Alu	118	286	(26)	2795696
563	28.3	3.1	16.3	chr4	4912261	4912405	(185302150)	C	L4_A_Mam	LINE/RTE-X	(337)	4653	4550	2795695
779	17.6	12.6	2.3	chr4	4912409	4912639	(185301916)	+	MLT2B2	LTR/ERVL	174	540	(22)	2795698
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
14	13.7	0.0	5.6	chr4	49289254	49289289	(140925266)	+	(TTTTGC)n	Simple_repeat	1	36	(0)	2865068
1804	12.9	6.2	0.0	chr4	49289292	49289578	(140924977)	C	L1PA10	LINE/L1	(0)	6168	5863	2865069
290	27.5	0.0	0.0	chr4	49313048	49313116	(140901439)	C	MER47C	DNA/TcMar-Tigger	(28)	69	1	2865111
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
1094	12.9	0.2	0.0	chr4	49322499	49324803	(140889752)	+	ACRO1	Satellite/acro	1	2308	(0)	2865130
304	22.8	0.0	0.0	chr4	49510858	49510914	(140703641)	C	MER47C	DNA/TcMar-Tigger	(28)	69	13	2865176
2097	5.2	0.0	2.2	chr4	183406771	183407060	(6807495)	+	L1PA5	LINE/L1	5886	6154	(0)	3044894
398	23.5	0.7	2.2	chr4	190022652	190022790	(191765)	+	LSAU	Satellite	2	138	(360)	3054526
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
1675	12.5	0.9	0.4	chr5	106535533	106535764	(75002495)	C	AluSc	SINE/Alu	(27)	282	50	3195261
4338	12.6	1.4	2.4	chr5	106535765	106535989	(75002270)	C	L1PA13	LINE/L1	(508)	5655	5437	3195260
15	4.8	0.0	0.0	chr5	142770469	142770490	(38767769)	+	(CTCG)n	Simple_repeat	1	22	(0)	3246639
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
12017	12.4	5.7	2.5	chr6	119236728	119237363	(51568616)	+	Tigger1	DNA/TcMar-Tigger	1446	2071	(347)	3486334
2230	12.5	0.0	0.7	chr6	143213489	143213816	(27592163)	C	AluSx1	SINE/Alu	(0)	312	1	3519542
193	25.5	16.1	0.0	chr7	471493	471586	(158874387)	+	MIRc	SINE/MIR	37	148	(120)	3558382
2539	6.2	0.0	0.7	chr7	40531669	40531973	(118814000)	C	AluY	SINE/Alu	(8)	303	1	3618600
94	10.7	1.1	1.1	chr7	57495470	57495644	(101850329)	+	(GGAAT)n	Simple_repeat	1	177	(0)	3642547
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
829	14.8	3.1	1.6	chr7	66630310	66630437	(92715536)	+	AluJr	SINE/Alu	2	131	(181)	3650454
216	36.3	6.5	9.3	chr7	66630739	66630975	(92714998)	+	MIR1_Amn	SINE/MIR	1	230	(0)	3650455
206	34.2	9.2	3.9	chr7	69365919	69366073	(89979900)	C	MamRTE1	LINE/RTE-BovB	(15)	3797	3634	3656504
193	26.1	5.5	1.4	chr7	69366197	69366266	(89979707)	C	L3	LINE/CR1	(4)	4095	4023	3656505
13	22.4	0.0	2.6	chr7	69366379	69366416	(89979557)	+	(GTG)n	Simple_repeat	1	38	(0)	3656506
517	31.9	13.5	6.7	chr7	101433343	101433735	(57912238)	C	L2	LINE/L2	(1114)	2305	1834	3708805
284	27.9	3.9	10.9	chr7	101433812	101433948	(57912025)	+	L2c	LINE/L2	3258	3384	(3)	3708808
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
1574	27.8	4.4	3.6	chr8	57205915	57206586	(87932050)	C	MER50	LTR/ERV1	(29)	705	28	3874990
2155	21.6	10.2	2.4	chr8	57209256	57210098	(87928538)	C	MER50-int	LTR/ERV1	(5568)	1637	729	3874991
1080	24.1	1.3	2.5	chr8	57210109	57210427	(87928209)	C	MER50	LTR/ERV1	(134)	600	286	3874991
828	29.3	5.5	3.9	chr8	57210498	57210965	(87927671)	C	MER50	LTR/ERV1	(231)	503	28	3874994
4203	20.2	1.5	5.6	chr8	117190394	117191434	(27947202)	+	L1ME4b	LINE/L1	3751	4748	(1398)	3961262
26824	4.2	0.2	0.0	chr8	117191438	117197574	(27941062)	+	L1PA3	LINE/L1	2	6152	(3)	3961263
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
441	28.0	10.0	3.0	chr8	143980833	143981101	(1157535)	+	HAL1ME	LINE/L1	2019	2308	(157)	4006909
26	6.3	0.0	0.0	chr8	143981293	143981326	(1157310)	+	(GGT)n	Simple_repeat	1	34	(0)	4006913
1387	25.7	7.0	3.4	chr8	144125268	144125631	(1013005)	+	L1MC4	LINE/L1	7167	7535	(507)	4007142
1023	29.8	9.9	5.0	chr9	19937028	19937649	(118457068)	C	L4_A_Mam	LINE/RTE-X	(87)	4903	4248	4037109
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
8198	6.1	0.8	0.4	chr9	136733983	136734985	(1659732)	C	LTR13	LTR/ERVK	(0)	1007	1	4194731
1546	24.7	5.1	0.5	chrX	44432391	44432805	(111608090)	+	LTR16A	LTR/ERVL	17	451	(0)	4428851
876	16.5	0.0	0.0	chrX	44432837	44432963	(111607932)	+	AluJo	SINE/Alu	1	127	(185)	4428852
313	30.7	2.8	1.8	chrX	48905708	48905851	(107135044)	+	MIRc	SINE/MIR	52	198	(64)	4437067
1084	26.1	0.4	0.8	chrX	48905860	48906110	(107134785)	C	MIR	SINE/MIR	(0)	262	13	4437068
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638