3686	12.6	6.2	2.5	chr1	180999	181980	(248774442)	C	TAR1	Satellite/telo	(399)	1018	1	269
2198	11.0	0.7	1.3	chr1	1016061	1016360	(247940062)	C	AluSx1	SINE/Alu	(14)	298	1	1282
1708	20.3	0.0	1.3	chr1	1463626	1463926	(247492496)	+	AluJr	SINE/Alu	1	297	(15)	1781
2109	11.8	1.0	0.0	chr1	1491254	1491542	(247464880)	+	AluSc5	SINE/Alu	1	292	(17)	1829
269	19.6	1.8	0.0	chr1	1491758	1491813	(247464609)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	355	1830
1747	19.0	0.0	0.0	chr1	1491912	1492190	(247464232)	+	AluJb	SINE/Alu	9	287	(25)	1831
270	19.6	1.8	0.0	chr1	1530110	1530165	(247426257)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	355	1899
1727	18.4	2.0	1.0	chr1	1530253	1530546	(247425876)	+	AluJr	SINE/Alu	1	297	(15)	1900
813	12.4	8.3	0.0	chr1	2812109	2812229	(246144193)	+	FLAM_C	SINE/Alu	1	132	(11)	3471
1592	23.9	13.5	0.2	chr1	2812479	2812914	(246143508)	+	MLT1D	LTR/ERVL-MaLR	1	503	(2)	3472
658	22.9	1.4	0.0	chr1	9841753	9841892	(239114530)	C	MLT1I	LTR/ERVL-MaLR	(269)	142	1	14494
1143	24.4	8.9	1.9	chr1	19730065	19730431	(229225991)	+	MLT1I	LTR/ERVL-MaLR	17	411	(0)	34341
309	27.6	1.9	2.2	chr1	19730448	19730566	(229225856)	C	L2c	LINE/L2	(3)	3372	3256	34342
897	25.2	5.3	1.3	chr1	20216152	20216384	(228740038)	+	MIR	SINE/MIR	13	255	(7)	35303
541	34.2	3.2	3.2	chr1	20216435	20216775	(228739647)	+	MLT1I	LTR/ERVL-MaLR	71	411	(0)	35304
292	37.2	2.0	2.5	chr1	25525256	25525451	(223430971)	+	L2c	LINE/L2	2951	3145	(242)	47309
756	25.1	13.4	5.9	chr1	25525454	25525809	(223430613)	C	MLT1J1	LTR/ERVL-MaLR	(0)	444	58	47310
914	31.3	1.9	5.8	chr1	30023431	30023858	(218932564)	+	MLT1I	LTR/ERVL-MaLR	1	411	(0)	57694
204	25.6	7.5	3.4	chr1	30023951	30024039	(218932383)	+	L2c	LINE/L2	2692	2784	(635)	57695
1111	27.0	5.7	1.1	chr1	31491401	31491731	(217464691)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	74	60768
331	25.6	6.5	6.5	chr1	36397465	36397602	(212558820)	+	MIRc	SINE/MIR	11	148	(120)	70781
473	34.5	3.4	7.1	chr1	39620585	39620862	(209335560)	+	MLT1J2	LTR/ERVL-MaLR	171	437	(11)	77071
488	28.0	3.2	2.6	chr1	39620998	39621202	(209335220)	+	MIRb	SINE/MIR	2	217	(51)	77073
614	34.6	4.7	1.8	chr1	41503862	41504188	(207452234)	+	MLT1I	LTR/ERVL-MaLR	73	409	(2)	80935
545	27.8	4.0	6.9	chr1	42756752	42756983	(206199439)	+	MIRb	SINE/MIR	32	260	(8)	83092
234	28.4	2.4	4.7	chr1	42757001	42757085	(206199337)	+	L1M6B	LINE/L1	17	99	(270)	83093
540	20.4	0.0	0.0	chr1	44721624	44721711	(204234711)	+	AluJb	SINE/Alu	178	265	(47)	86565
276	23.7	3.5	1.2	chr1	54052722	54052803	(194903619)	+	L2c	LINE/L2	3245	3355	(32)	104307
249	29.2	8.0	3.2	chr1	56532748	56532944	(192423478)	C	L2c	LINE/L2	(9)	3378	3148	109030
1880	13.2	0.0	0.0	chr1	56533054	56533311	(192423111)	C	AluSz	SINE/Alu	(11)	301	44	109031
852	31.7	8.3	4.2	chr1	58787962	58788456	(190167966)	C	MLT1I-int	LTR/ERVL-MaLR	(866)	543	2	113511
1319	25.1	5.8	4.0	chr1	58788458	58788831	(190167591)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	31	113511
944	27.7	5.3	2.2	chr1	59243825	59244165	(189712257)	+	L1MEi	LINE/L1	1139	1498	(714)	114513
1700	19.7	0.8	9.2	chr1	59244166	59244589	(189711833)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	3	114514
1569	19.6	2.1	2.6	chr1	60914856	60915196	(188041226)	+	MLT1C	LTR/ERVL-MaLR	129	467	(0)	117330
1094	29.8	8.5	3.4	chr1	61562066	61562545	(187393877)	C	L2a	LINE/L2	(289)	3137	2590	118363
2206	15.7	6.6	1.3	chr1	61562546	61562931	(187393491)	C	MLT1A1	LTR/ERVL-MaLR	(0)	408	1	118365
34	5.1	0.0	0.0	chr1	62356289	62356329	(186600093)	+	(AAAT)n	Simple_repeat	1	41	(0)	120068
754	23.7	5.4	5.0	chr1	62356330	62356426	(186599996)	C	MIR	SINE/MIR	(140)	122	31	120066
607	29.4	15.5	0.6	chr1	62356478	62356822	(186599600)	C	MLT1I	LTR/ERVL-MaLR	(1)	410	5	120069
22	20.2	7.4	1.1	chr1	63523647	63523727	(185432695)	+	(TCTCTG)n	Simple_repeat	1	87	(0)	122201
309	28.2	9.4	4.5	chr1	65002361	65002589	(183953833)	+	MIRb	SINE/MIR	8	251	(17)	124873
13	9.8	0.0	0.0	chr1	65002691	65002712	(183953710)	+	(CGG)n	Simple_repeat	1	22	(0)	124874
19	0.0	0.0	0.0	chr1	65003014	65003034	(183953388)	+	(T)n	Simple_repeat	1	21	(0)	124875
18	0.0	0.0	0.0	chr1	65067782	65067801	(183888621)	+	(A)n	Simple_repeat	1	20	(0)	125017
20	16.0	0.0	0.0	chr1	65067870	65067904	(183888518)	+	(TG)n	Simple_repeat	1	35	(0)	125018
1594	20.1	4.4	7.2	chr1	66499338	66499739	(182456683)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	127324
929	25.0	10.6	2.6	chr1	66499740	66499929	(182456493)	+	L1M5	LINE/L1	4628	4835	(1311)	127323
505	26.2	3.9	5.4	chr1	68463330	68463434	(180492988)	C	L2a	LINE/L2	(2)	3424	3319	130698
1890	20.9	1.0	13.1	chr1	68463435	68464007	(180492415)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	3	130699
9157	16.3	3.4	1.8	chr1	69668967	69672013	(179284409)	C	L1MA3	LINE/L1	(4311)	3254	105	132306
977	4.2	0.0	0.0	chr1	69672014	69672131	(179284291)	C	L1PA5	LINE/L1	(5)	6149	6032	132309
352	33.2	7.6	2.9	chr1	71680620	71680895	(177275527)	C	L1MEd	LINE/L1	(5193)	1910	1621	135190
245	28.4	0.0	0.0	chr1	71680908	71680981	(177275441)	C	MLT1I	LTR/ERVL-MaLR	(7)	404	331	135191
599	11.1	0.0	0.0	chr1	77779898	77779987	(171176435)	+	5S	rRNA	1	90	(31)	143484
259	30.9	7.9	2.8	chr1	88260748	88260927	(160695495)	C	MLT1I-int	LTR/ERVL-MaLR	(958)	429	240	158229
286	16.9	1.7	1.7	chr1	88260927	88260986	(160695436)	C	MLT1I-int	LTR/ERVL-MaLR	(1325)	62	3	158229
1085	29.5	6.8	2.9	chr1	88260988	88261371	(160695051)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	12	158229
539	29.0	12.2	2.1	chr1	112675770	112676012	(136280410)	+	L3	LINE/CR1	3261	3531	(568)	193563
230	37.8	5.9	0.0	chr1	112676038	112676148	(136280274)	+	CR1-L3A_Croc	LINE/CR1	3720	3837	(451)	193564
793	18.5	0.0	1.5	chr1	116899488	116899622	(132056800)	+	FLAM_C	SINE/Alu	1	133	(10)	200459
13	20.1	5.0	0.0	chr1	116899625	116899664	(132056758)	+	GA-rich	Low_complexity	1	42	(0)	200460
526	28.6	3.6	3.1	chr1	116899670	116899864	(132056558)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	253	200461
2597	8.4	5.0	1.9	chr1	144101293	144106919	(104849503)	+	(TGGCTGGCT)n	Simple_repeat	1	5911	(0)	208844
22	22.9	0.0	0.0	chr1	144412465	144412510	(104543912)	+	G-rich	Low_complexity	1	46	(0)	209361
1273	10.3	0.0	0.6	chr1	144412576	144412741	(104543681)	+	U1	snRNA	1	165	(0)	209362
27	0.0	0.0	0.0	chr1	145425615	145425640	(103530782)	+	(AGGCGC)n	Simple_repeat	1	26	(0)	210934
2435	12.5	0.0	0.0	chr1	150725305	150725616	(98230806)	C	AluSx	SINE/Alu	(0)	312	1	219695
1736	19.8	2.4	0.0	chr1	150725619	150725906	(98230516)	C	AluJr	SINE/Alu	(17)	295	1	219696
2418	12.4	0.0	0.0	chr1	150725909	150726214	(98230208)	C	AluSx1	SINE/Alu	(6)	306	1	219697
324	14.5	14.8	0.0	chr1	154360698	154360766	(94595656)	+	MLT1B	LTR/ERVL-MaLR	1	81	(309)	225982
1731	19.7	3.5	0.0	chr1	154360767	154361066	(94595356)	C	AluSz	SINE/Alu	(1)	311	1	225983
1284	11.7	0.0	2.2	chr1	154361146	154361324	(94595098)	+	AluSx3	SINE/Alu	135	309	(2)	225984
13	0.0	9.1	0.0	chr1	154361326	154361347	(94595075)	+	(AGA)n	Simple_repeat	1	24	(0)	225985
59	9.6	1.1	0.0	chr1	155244786	155244875	(93711547)	+	(GAGA)n	Simple_repeat	1	91	(0)	227608
2144	12.6	0.0	0.7	chr1	165697747	165698031	(83258391)	+	AluSx1	SINE/Alu	1	283	(29)	244107
33	0.0	2.6	2.5	chr1	165698032	165698070	(83258352)	+	(AAAC)n	Simple_repeat	1	40	(0)	244108
15	4.6	17.8	0.0	chr1	165698592	165698636	(83257786)	+	G-rich	Low_complexity	1	53	(0)	244109
765	33.1	8.0	2.6	chr1	170883180	170883567	(78072855)	+	MLT1I	LTR/ERVL-MaLR	1	411	(0)	251912
21	22.1	7.3	0.0	chr1	178725125	178725192	(70231230)	+	(CG)n	Simple_repeat	1	73	(0)	263565
22	9.4	0.0	0.0	chr1	178725259	178725292	(70231130)	+	(GCG)n	Simple_repeat	1	34	(0)	263566
17	27.9	0.0	6.1	chr1	178725437	178725450	(70230972)	+	G-rich	Low_complexity	1	18	(64)	263567
16	4.5	0.0	0.0	chr1	178725451	178725473	(70230949)	+	(GGGA)n	Simple_repeat	1	23	(0)	263568
17	27.9	0.0	6.1	chr1	178725474	178725518	(70230904)	+	G-rich	Low_complexity	19	82	(0)	263567
2006	15.6	1.9	1.4	chr1	180918802	180919159	(68037263)	C	MLT1A0	LTR/ERVL-MaLR	(0)	365	6	267170
2149	10.6	0.0	2.1	chr1	186664063	186664383	(62292039)	C	AluSg	SINE/Alu	(0)	310	1	275929
1750	17.8	3.4	6.1	chr1	186664384	186664411	(62292011)	C	MLT2C2	LTR/ERVL	(209)	255	238	275928
1424	17.0	16.2	3.1	chr1	186664412	186664763	(62291659)	C	MLT1A1	LTR/ERVL-MaLR	(1)	407	1	275930
21	28.3	0.0	4.0	chr1	200029188	200029261	(48927161)	+	(GC)n	Simple_repeat	1	74	(0)	293523
1679	12.8	5.3	2.7	chr1	202927401	202927696	(46028726)	+	AluJb	SINE/Alu	1	304	(8)	298768
25	19.3	0.0	0.0	chr1	211259429	211259481	(37696941)	+	(CCT)n	Simple_repeat	1	53	(0)	312389
15	18.4	2.1	4.2	chr1	211259610	211259656	(37696766)	+	(CGGCAG)n	Simple_repeat	1	48	(0)	312390
14	4.8	0.0	4.2	chr1	211259634	211259657	(37696765)	+	(CGG)n	Simple_repeat	1	24	(0)	312391
297	23.3	2.3	2.1	chr1	219788875	219788974	(29167448)	+	MLT1I	LTR/ERVL-MaLR	325	437	(7)	325150
388	24.5	10.9	0.0	chr1	219789004	219789101	(29167321)	C	L2a	LINE/L2	(0)	3426	3317	325151
23	15.5	2.2	0.0	chr1	220300500	220300544	(28655878)	+	(AGC)n	Simple_repeat	1	46	(0)	326003
1746	21.2	2.5	4.2	chr1	224059877	224060285	(24896137)	+	MLT1D	LTR/ERVL-MaLR	104	505	(0)	331697
2040	14.4	0.0	0.0	chr1	224060291	224060582	(24895840)	C	AluSx	SINE/Alu	(19)	293	2	331700
1215	23.1	16.8	0.9	chr1	226714090	226714434	(22241988)	+	MLT1I	LTR/ERVL-MaLR	1	411	(0)	336327
241	37.8	6.5	3.1	chr1	226714549	226714742	(22241680)	+	L2c	LINE/L2	2991	3191	(196)	336328
9246	6.1	1.2	9.6	chr1	227275584	227277091	(21679331)	+	SVA_A	Retroposon/SVA	8	1387	(0)	337206
1983	14.2	0.7	0.3	chr1	227304141	227304429	(21651993)	+	AluSz6	SINE/Alu	17	306	(6)	337255
6278	15.0	2.8	0.0	chr1	228500001	228501063	(20455359)	C	Tigger1	DNA/TcMar-Tigger	(1294)	1124	31	338818
1499	23.2	6.6	8.5	chr1	228501092	228501759	(20454663)	C	MER77B	LTR/ERVL	(6)	694	41	338819
40	29.6	0.0	0.0	chr1	228635559	228635667	(20320755)	+	(CA)n	Simple_repeat	1	109	(0)	338951
63	31.5	1.7	0.8	chr1	228635679	228635919	(20320503)	+	GA-rich	Low_complexity	1	245	(0)	338952
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
23	22.7	1.6	0.0	chr1	241356738	241356799	(7599623)	+	(GCGCCCG)n	Simple_repeat	1	63	(0)	359175
1828	17.4	2.3	0.7	chr1	241900288	241900585	(7055837)	C	AluJr	SINE/Alu	(8)	304	2	360038
260	17.0	0.0	2.1	chr1	241900587	241900634	(7055788)	+	MLT1I	LTR/ERVL-MaLR	363	409	(2)	360039
13	18.9	0.0	0.0	chr1	243254979	243255008	(5701414)	+	(GCG)n	Simple_repeat	1	30	(0)	362301
18	13.9	0.0	0.0	chr1	243255125	243255157	(5701265)	+	(TCG)n	Simple_repeat	1	33	(0)	362302
1835	21.3	8.3	3.4	chr1	244116694	244117170	(4839252)	+	MLT1D	LTR/ERVL-MaLR	3	505	(0)	363612
1125	21.7	7.0	0.6	chr10	518431	518750	(133278672)	+	MLT1A0	LTR/ERVL-MaLR	23	364	(1)	371588
1257	21.5	17.0	3.0	chr10	3793714	3794145	(130003277)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	1	375569
946	26.1	7.9	7.0	chr10	13400363	13400429	(120396993)	C	MLT1J2	LTR/ERVL-MaLR	(3)	445	386	390731
3953	14.9	1.1	1.5	chr10	13400430	13401077	(120396345)	C	LTR9D	LTR/ERV1	(0)	645	1	390732
685	21.6	14.8	3.5	chr10	13816299	13816495	(119980927)	+	MLT1I	LTR/ERVL-MaLR	189	411	(0)	391412
1347	32.3	3.4	0.8	chr10	15856844	15857383	(117940039)	+	L2a	LINE/L2	2650	3205	(221)	394901
1686	22.2	2.8	3.3	chr10	15865137	15865528	(117931894)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	394910
5472	12.6	2.1	1.0	chr10	15865557	15866392	(117931030)	C	Tigger1	DNA/TcMar-Tigger	(0)	2418	1573	394911
1629	16.5	6.6	6.6	chr10	23343158	23343521	(110453901)	+	MLT1A0	LTR/ERVL-MaLR	1	364	(1)	406650
523	22.5	6.2	8.1	chr10	23343538	23343735	(110453687)	C	MIR	SINE/MIR	(65)	197	4	406651
588	13.1	6.1	0.9	chr10	33481252	33481359	(100316063)	+	THE1D	LTR/ERVL-MaLR	1	114	(267)	423321
32	0.0	0.0	0.0	chr10	42867073	42867102	(90930320)	+	(TGTTTT)n	Simple_repeat	1	30	(0)	432671
974	26.5	10.0	3.6	chr10	67630193	67630576	(66166846)	+	MLT1I	LTR/ERVL-MaLR	1	411	(0)	467691
20	24.9	1.8	0.0	chr10	67885083	67885139	(65912283)	+	(ACG)n	Simple_repeat	1	58	(0)	468132
19	14.2	0.0	0.0	chr10	67885479	67885509	(65911913)	+	(T)n	Simple_repeat	1	31	(0)	468133
828	14.3	0.0	1.6	chr10	68955457	68955582	(64841840)	+	AluSx3	SINE/Alu	161	284	(27)	470522
194	28.1	3.4	12.3	chr10	68955593	68955722	(64841700)	+	L2c	LINE/L2	3269	3386	(1)	470523
2334	8.0	0.3	0.3	chr10	70240798	70241086	(63556336)	C	AluSc	SINE/Alu	(20)	289	1	473017
275	28.9	11.8	0.7	chr10	70241087	70241229	(63556193)	+	MLT1I	LTR/ERVL-MaLR	130	290	(320)	473014
358	19.7	0.0	0.0	chr10	70241245	70241315	(63556107)	+	MLT1I	LTR/ERVL-MaLR	341	411	(0)	473014
591	27.2	3.7	9.0	chr10	70241328	70241445	(63555977)	+	MLT1L	LTR/ERVL-MaLR	360	461	(149)	473018
2507	6.4	0.0	3.2	chr10	70241446	70241756	(63555666)	+	AluY	SINE/Alu	1	301	(10)	473019
18	17.2	0.0	2.4	chr10	70404143	70404204	(63393218)	+	(GCT)n	Simple_repeat	1	60	(0)	473402
14	21.3	1.8	5.4	chr10	70404189	70404243	(63393179)	+	(CTGAGG)n	Simple_repeat	1	56	(0)	473403
22	15.4	0.0	0.0	chr10	70404220	70404300	(63393122)	+	(GCGGCG)n	Simple_repeat	1	81	(0)	473404
15	15.0	2.4	4.8	chr10	70404332	70404372	(63393050)	+	(GCC)n	Simple_repeat	1	42	(0)	473405
230	26.7	8.7	1.7	chr10	76762978	76763095	(57034327)	C	L1M5	LINE/L1	(429)	5695	5569	484923
245	31.5	6.8	4.2	chr10	78337143	78337299	(55460123)	C	MIRc	SINE/MIR	(24)	244	73	487624
1172	25.9	11.7	0.6	chr10	78337300	78337664	(55459758)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	487625
223	20.0	6.8	0.0	chr10	88261230	88261284	(45536138)	+	MIRb	SINE/MIR	55	113	(155)	502596
530	18.9	5.1	0.0	chr10	88261329	88261439	(45535983)	C	MLT1I	LTR/ERVL-MaLR	(6)	405	289	502597
446	18.4	0.0	0.0	chr10	88261542	88261617	(45535805)	C	MLT1I	LTR/ERVL-MaLR	(255)	156	81	502597
257	31.2	20.9	0.6	chr10	98134109	98134440	(35662982)	C	L2a	LINE/L2	(1177)	2242	1826	519432
495	21.1	5.5	0.0	chr10	98306436	98306539	(35490883)	C	MIRb	SINE/MIR	(130)	138	29	519688
764	24.6	3.3	1.4	chr10	98306659	98306868	(35490554)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	198	519689
12	11.1	6.9	0.0	chr10	99533066	99533094	(34264328)	+	(GCC)n	Simple_repeat	1	31	(0)	521636
18	8.4	0.0	8.9	chr10	102504177	102504221	(31293201)	+	(GCCCCCG)n	Simple_repeat	1	45	(0)	527056
2373	10.0	0.3	0.0	chr10	102804107	102804405	(30993017)	+	AluSz	SINE/Alu	1	300	(12)	527622
329	23.1	1.3	1.3	chr10	102804444	102804522	(30992900)	C	Charlie24	DNA/hAT-Charlie	(0)	2450	2372	527623
1181	29.1	3.0	2.1	chr10	102804536	102804924	(30992498)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	19	527624
22	7.2	0.0	0.0	chr10	110870878	110870906	(22926516)	+	(GT)n	Simple_repeat	1	29	(0)	540303
34	6.8	0.0	0.0	chr10	116273635	116273646	(17523776)	+	(CA)n	Simple_repeat	1	12	(0)	548528
1615	20.9	1.9	3.2	chr10	123126102	123126471	(10670951)	+	MLT1A0	LTR/ERVL-MaLR	1	365	(0)	559832
195	27.3	11.4	7.7	chr10	123126472	123126490	(10670932)	C	MIRb	SINE/MIR	(250)	18	1	559831
639	32.5	9.6	4.5	chr10	123126518	123126756	(10670666)	C	MIRb	SINE/MIR	(8)	260	17	559833
244	32.1	9.5	5.0	chr10	132566748	132566947	(1230475)	+	L1M1	LINE/L1	4055	4264	(1882)	571783
270	27.0	8.2	0.0	chr10	132567086	132567174	(1230248)	C	MLT1L	LTR/ERVL-MaLR	(96)	514	418	571784
752	20.0	0.0	0.0	chr10	132567316	132567445	(1229977)	C	FLAM_C	SINE/Alu	(13)	130	1	571785
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
13	28.7	0.0	0.0	chr11	1017643	1017684	(134068938)	+	(TGG)n	Simple_repeat	1	42	(0)	574242
61	0.0	0.0	0.0	chr11	3555645	3555696	(131530926)	+	(CA)n	Simple_repeat	1	52	(0)	577204
622	34.3	2.9	2.0	chr11	3555711	3556013	(131530609)	C	MLT1I	LTR/ERVL-MaLR	(3)	408	103	577205
21	17.2	3.1	4.5	chr11	4393705	4393768	(130692854)	+	GA-rich	Low_complexity	1	66	(0)	578776
27	20.0	2.8	1.4	chr11	16606190	16606263	(118480359)	+	(TTTCTTT)n	Simple_repeat	1	75	(0)	597232
2592	13.4	1.2	2.0	chr11	32884684	32884864	(102201758)	+	MER57B1	LTR/ERV1	224	401	(0)	622420
306	20.0	5.9	2.4	chr11	32884865	32884946	(102201676)	+	L1MC4	LINE/L1	7092	7176	(866)	622418
720	19.1	4.4	0.8	chr11	32884965	32885096	(102201526)	+	MLT1C	LTR/ERVL-MaLR	327	463	(4)	622422
5271	12.3	0.7	3.4	chr11	32885097	32885859	(102200763)	+	LTR1B0	LTR/ERV1	1	742	(0)	622423
338	26.7	7.1	0.0	chr11	44911388	44911518	(90175104)	+	MamRep564	Unknown	123	263	(94)	641111
1012	27.1	6.4	2.5	chr11	45149491	45149883	(89936739)	+	MLT1I	LTR/ERVL-MaLR	3	411	(0)	641579
255	30.0	11.4	4.2	chr11	45150080	45150381	(89936241)	+	L2c	LINE/L2	2969	3287	(100)	641580
29	3.0	0.0	0.0	chr11	46616832	46616865	(88469757)	+	(A)n	Simple_repeat	1	34	(0)	644306
16	0.0	0.0	0.0	chr11	46617337	46617354	(88469268)	+	(TC)n	Simple_repeat	1	18	(0)	644307
888	31.3	7.9	0.8	chr11	61172794	61173167	(73913455)	+	MLT1I	LTR/ERVL-MaLR	7	409	(2)	659627
275	28.6	6.3	1.4	chr11	61173250	61173386	(73913236)	+	L2c	LINE/L2	3047	3184	(191)	659628
4651	18.4	1.7	0.1	chr11	62115609	62116496	(72970126)	C	Cheshire	DNA/hAT-Charlie	(612)	1808	907	661529
1275	20.2	12.4	3.9	chr11	62116497	62116878	(72969744)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	49	661533
16	12.6	4.1	5.9	chr11	65818245	65818293	(69268329)	+	G-rich	Low_complexity	1	51	(0)	668224
291	22.6	6.4	6.4	chr11	65818452	65818560	(69268062)	+	MIRc	SINE/MIR	98	206	(62)	668225
309	31.8	12.5	0.0	chr11	66328573	66328698	(68757924)	C	L2a	LINE/L2	(2)	3424	3281	669254
18	21.9	0.0	0.0	chr11	66843351	66843393	(68243229)	+	G-rich	Low_complexity	1	43	(0)	670370
222	27.6	22.8	0.0	chr11	66957904	66958008	(68128614)	+	MIRb	SINE/MIR	16	151	(117)	670573
13	22.5	0.0	0.0	chr11	66958062	66958097	(68128525)	+	G-rich	Low_complexity	1	36	(0)	670574
257	29.3	15.2	2.6	chr11	68129945	68130098	(66956524)	+	MLT1J1	LTR/ERVL-MaLR	200	376	(72)	672818
591	29.9	4.3	0.3	chr11	68130169	68130370	(66956252)	+	MLT1J2	LTR/ERVL-MaLR	239	448	(0)	672819
775	10.1	4.2	1.0	chr11	68130394	68130546	(66956076)	+	LTR38-int	LTR/ERV1	1415	1584	(5055)	672820
1072	25.9	7.4	2.1	chr11	69108345	69108781	(65977841)	+	MLT1C	LTR/ERVL-MaLR	6	467	(0)	674523
211	36.6	14.5	2.7	chr11	69108806	69109024	(65977598)	+	L2c	LINE/L2	3096	3344	(43)	674524
448	31.4	30.9	4.5	chr11	69253216	69253481	(65833141)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	113	674786
462	21.8	13.4	6.0	chr11	69683091	69683241	(65403381)	C	MLT1I	LTR/ERVL-MaLR	(0)	448	274	675486
337	18.1	21.6	0.8	chr11	69683306	69683422	(65403200)	C	MLT1I	LTR/ERVL-MaLR	(296)	148	1	675486
859	20.2	1.8	0.6	chr11	75248510	75248672	(59837950)	C	FRAM	SINE/Alu	(11)	165	1	685626
309	23.2	0.0	12.5	chr11	75248893	75248987	(59837635)	C	L2a	LINE/L2	(1)	3425	3338	685627
2109	21.2	7.7	8.3	chr11	75946415	75946839	(59139783)	C	MLT1E3	LTR/ERVL-MaLR	(0)	624	171	687101
1226	19.0	11.0	8.0	chr11	75946840	75947216	(59139406)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	687102
189	31.4	4.1	1.4	chr11	85648194	85648264	(49438358)	C	L3	LINE/CR1	(3833)	266	194	704148
224	31.0	10.5	6.5	chr11	85648284	85648438	(49438184)	+	MIRc	SINE/MIR	44	205	(63)	704149
26226	2.5	0.4	0.0	chr11	94232525	94238528	(40848094)	C	L1PA2	LINE/L1	(3)	6152	124	716864
385	19.0	20.4	0.0	chr11	112308799	112308919	(22777703)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	260	742930
1735	24.9	14.0	0.2	chr11	112308990	112309468	(22777154)	C	MLT1F2	LTR/ERVL-MaLR	(4)	556	1	742931
227	32.5	8.6	0.0	chr11	130067806	130067965	(5018657)	C	MIRc	SINE/MIR	(10)	258	84	771317
1262	21.6	2.4	12.3	chr11	130067966	130068381	(5018241)	C	MLT1A	LTR/ERVL-MaLR	(0)	374	1	771318
50	4.0	0.0	0.0	chr12	8364998	8365049	(124910260)	+	(CA)n	Simple_repeat	1	52	(0)	792175
632	32.8	3.1	3.2	chr12	8365064	8365407	(124909902)	C	MLT1I	LTR/ERVL-MaLR	(3)	408	70	792176
12641	19.4	4.7	2.2	chr12	11568942	11569101	(121706208)	C	L1MC4	LINE/L1	(814)	5332	5190	796673
194	32.1	4.7	0.0	chr12	12786644	12786724	(120488585)	C	MIRc	SINE/MIR	(87)	181	97	798776
266	30.1	1.2	1.2	chr12	12930610	12930693	(120344616)	+	MamRTE1	LINE/RTE-BovB	3512	3595	(217)	799097
801	29.4	12.2	1.9	chr12	12930795	12931162	(120344147)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	799098
286	38.5	4.4	2.0	chr12	15020446	15020644	(118254665)	C	MIRc	SINE/MIR	(50)	218	15	802252
2085	13.1	0.0	1.6	chr12	24991226	24991537	(108283772)	C	AluJb	SINE/Alu	(3)	309	3	815778
588	30.6	7.3	4.9	chr12	24991841	24992331	(108282978)	C	L1ME4b	LINE/L1	(4)	888	385	815779
230	19.6	3.8	3.8	chr12	39318503	39318555	(93956754)	C	MIRc	SINE/MIR	(120)	148	96	832241
2296	7.7	1.3	0.3	chr12	52025064	52025360	(81249949)	C	AluSx1	SINE/Alu	(12)	300	1	852327
489	32.1	9.9	2.9	chr12	52025371	52025780	(81249529)	+	L2a	LINE/L2	2972	3425	(1)	852328
15	14.8	1.9	7.5	chr12	101877701	101877752	(31397557)	+	(GCGCCCG)n	Simple_repeat	1	53	(0)	928161
13	5.2	0.0	0.0	chr12	101877768	101877787	(31397522)	+	(CGG)n	Simple_repeat	1	20	(0)	928162
481	19.4	2.2	10.8	chr12	103821118	103821310	(29453999)	+	MLT1I	LTR/ERVL-MaLR	271	446	(2)	931352
437	28.7	6.8	3.0	chr12	103821317	103821485	(29453824)	+	MLT1K	LTR/ERVL-MaLR	59	234	(361)	931353
455	28.2	15.8	5.6	chr12	109383405	109383742	(23891567)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	66	942414
237	35.1	11.3	0.6	chr12	111116853	111117027	(22158282)	C	MIRb	SINE/MIR	(58)	210	11	946333
1057	24.7	6.3	6.3	chr12	111117175	111117585	(22157724)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	946334
505	28.6	14.7	3.8	chr12	112681998	112682097	(20593212)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	344	949851
2262	17.3	14.1	2.0	chr12	112682098	112682546	(20592763)	C	MLT2B2	LTR/ERVL	(0)	515	4	949852
826	26.5	9.0	2.7	chr12	113726141	113726474	(19548835)	+	MLT1I	LTR/ERVL-MaLR	55	411	(0)	952337
302	14.6	0.0	0.0	chr12	113726603	113726650	(19548659)	+	L2b	LINE/L2	3321	3368	(7)	952338
37	20.0	1.2	0.0	chr12	114684052	114684132	(18591177)	+	GA-rich	Low_complexity	1	82	(0)	954267
13	15.7	8.1	4.5	chr12	114684550	114684611	(18590698)	+	(GAGGCAG)n	Simple_repeat	1	67	(0)	954268
567	29.4	13.1	6.3	chr12	115186109	115186489	(18088820)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	955480
806	24.8	21.7	3.6	chr12	115680849	115681178	(17594131)	+	MLT1I	LTR/ERVL-MaLR	2	407	(4)	956536
2234	13.0	0.0	0.0	chr12	115681191	115681491	(17593818)	C	AluSz	SINE/Alu	(11)	301	1	956537
747	23.0	9.8	0.5	chr12	115710421	115710643	(17564666)	+	MIR	SINE/MIR	17	262	(0)	956617
258	18.4	0.0	6.0	chr12	116124078	116124193	(17151116)	+	HERVIP10FH-int	LTR/ERV1	778	886	(4216)	957390
434	29.5	17.4	0.5	chr12	117672301	117672501	(15602808)	+	MIR	SINE/MIR	2	243	(19)	960829
575	26.4	6.4	6.6	chr12	117911238	117911558	(15363751)	+	MLT1I	LTR/ERVL-MaLR	87	411	(0)	961379
204	31.5	12.8	0.6	chr12	117911576	117911754	(15363555)	+	L2c	LINE/L2	3182	3385	(2)	961376
2493	16.9	6.8	8.8	chr12	119744822	119745613	(13529696)	+	L1MEc	LINE/L1	1089	1863	(4537)	965419
1185	8.3	1.8	0.0	chr12	119745646	119745813	(13529496)	+	L1MA4	LINE/L1	6126	6296	(4)	965420
1269	27.7	9.9	2.5	chr12	123571335	123571727	(9703582)	+	MLT1J2	LTR/ERVL-MaLR	10	434	(14)	974436
436	27.0	12.8	5.4	chr12	123571729	123571896	(9703413)	C	MLT1J1	LTR/ERVL-MaLR	(1)	410	211	974437
1971	13.7	0.0	0.7	chr12	123571897	123572181	(9703128)	+	AluSx1	SINE/Alu	1	283	(29)	974438
501	32.2	0.7	0.7	chr12	124211184	124211336	(9063973)	+	MIR	SINE/MIR	12	164	(98)	975681
1150	27.8	3.7	0.6	chr12	124211337	124211680	(9063629)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	57	975682
1042	30.2	2.6	0.6	chr12	124281184	124281530	(8993779)	+	MLT1I	LTR/ERVL-MaLR	52	410	(1)	975826
256	38.8	3.6	2.5	chr12	124281546	124281981	(8993328)	+	CR1-3_Croc	LINE/CR1	1790	2230	(1375)	975827
1099	28.4	7.3	3.0	chr12	124752699	124753065	(8522244)	+	MLT1I	LTR/ERVL-MaLR	28	411	(0)	976750
290	31.4	0.9	0.0	chr12	124753066	124753170	(8522139)	C	MIRb	SINE/MIR	(115)	153	48	976751
502	26.6	0.8	0.0	chr12	124762337	124762460	(8512849)	+	L2a	LINE/L2	3301	3425	(1)	976774
379	23.1	0.0	0.0	chr12	124762466	124762543	(8512766)	C	MIRb	SINE/MIR	(8)	260	183	976775
1022	29.7	5.8	1.4	chr12	124762561	124762922	(8512387)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	33	976776
796	28.9	5.9	5.2	chr12	124812207	124812574	(8462735)	+	MLT1I	LTR/ERVL-MaLR	34	404	(7)	976881
306	22.4	17.3	0.0	chr12	131001329	131001538	(2273771)	C	L1ME4a	LINE/L1	(35)	6089	5836	987622
560	22.8	6.5	4.6	chr12	131001550	131001754	(2273555)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	239	987623
21	17.5	0.0	2.1	chr13	30114788	30114834	(84249494)	+	(GCG)n	Simple_repeat	1	47	(0)	1009142
279	28.9	1.0	8.8	chr13	33224278	33224345	(81139983)	+	MLT1O	LTR/ERVL-MaLR	411	470	(72)	1013988
1290	25.1	8.0	2.1	chr13	33224346	33224731	(81139597)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	1013989
67	0.0	0.0	0.0	chr13	35476297	35476355	(78887973)	+	(CTG)n	Simple_repeat	1	59	(0)	1017168
16	22.0	2.3	2.2	chr13	35476620	35476663	(78887665)	+	(GT)n	Simple_repeat	1	45	(0)	1017169
724	29.0	14.5	0.0	chr13	39112282	39112579	(75251749)	+	MLT1I	LTR/ERVL-MaLR	63	404	(7)	1022174
1185	10.2	0.0	4.1	chr13	41455722	41455916	(72908412)	+	LTR2C	LTR/ERV1	315	501	(0)	1025873
678	13.0	3.6	0.0	chr13	46468806	46468913	(67895415)	C	L1MA5A	LINE/L1	(4)	6293	6182	1033936
454	24.6	5.1	11.2	chr13	46521469	46521656	(67842672)	+	MIR	SINE/MIR	17	192	(70)	1034039
586	22.9	6.1	4.4	chr13	46521660	46521819	(67842509)	C	MLT1J2	LTR/ERVL-MaLR	(3)	445	283	1034040
2958	17.1	1.5	5.6	chr13	64786561	64787198	(49577130)	C	LTR9	LTR/ERV1	(1)	611	1	1058985
2768	17.7	14.2	7.5	chr13	64879796	64880504	(49483824)	C	LTR1	LTR/ERV1	(18)	765	1	1059088
430	31.7	6.5	1.5	chr13	66438502	66438706	(47925622)	+	MLT1J2	LTR/ERVL-MaLR	3	218	(230)	1061023
326	24.2	7.1	0.0	chr13	66438777	66438867	(47925461)	+	MLT1J2	LTR/ERVL-MaLR	343	440	(8)	1061023
1910	18.3	2.5	3.3	chr13	72591061	72591428	(41772900)	+	MLT1A0	LTR/ERVL-MaLR	1	365	(0)	1069017
1848	18.5	0.3	0.0	chr13	72591509	72591795	(41772533)	+	AluJb	SINE/Alu	2	289	(23)	1069018
690	30.9	5.8	0.6	chr13	73306736	73307062	(41057266)	+	MLT1I	LTR/ERVL-MaLR	34	405	(6)	1070351
471	25.5	9.6	0.7	chr13	78184635	78184776	(36179552)	+	MLT1I	LTR/ERVL-MaLR	255	410	(1)	1077185
317	35.6	8.3	6.0	chr13	78644093	78644656	(35719672)	+	L2a	LINE/L2	2681	3274	(101)	1077816
2889	14.4	1.8	7.3	chr13	86381751	86382297	(27982031)	+	LTR8	LTR/ERV1	1	516	(175)	1087648
2404	5.8	0.3	2.4	chr13	86382312	86382604	(27981724)	C	AluY	SINE/Alu	(24)	287	1	1087649
4065	21.0	6.3	2.7	chr13	86382660	86383512	(27980816)	+	MER52A	LTR/ERV1	870	1755	(0)	1087650
528	33.5	8.3	4.3	chr13	87512532	87512855	(26851473)	+	MLT1I	LTR/ERVL-MaLR	74	411	(0)	1089101
437	27.1	7.2	3.7	chr13	90934924	90935084	(23429244)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	245	1093560
1225	24.1	6.4	5.2	chr13	93233868	93234391	(21129937)	+	LTR55	LTR/ERVL?	16	546	(2)	1096618
238	30.6	21.9	1.5	chr13	93234394	93234599	(21129729)	C	L2a	LINE/L2	(531)	2888	2629	1096616
1872	19.3	1.6	2.5	chr13	106570171	106570400	(7793928)	+	MLT1A0	LTR/ERVL-MaLR	139	365	(0)	1116236
242	13.8	7.0	8.1	chr13	106570401	106570487	(7793841)	C	MLT1A0	LTR/ERVL-MaLR	(225)	149	64	1116235
614	15.4	3.0	5.8	chr13	106570733	106570870	(7793458)	C	MLT1A0	LTR/ERVL-MaLR	(231)	134	1	1116238
16	35.7	2.5	3.2	chr14	26597952	26597985	(80445733)	+	(CGC)n	Simple_repeat	1	124	(0)	1137002
26	23.9	2.3	2.2	chr14	26597986	26598072	(80445646)	+	(CGCTGC)n	Simple_repeat	1	89	(0)	1137003
27	22.9	0.9	7.1	chr14	26598275	26598385	(80445333)	+	G-rich	Low_complexity	1	112	(0)	1137004
2176	11.3	0.3	0.0	chr14	49509438	49509720	(57533998)	+	AluSx1	SINE/Alu	1	284	(28)	1168037
36	0.0	0.0	0.0	chr14	49509722	49509752	(57533966)	+	(AT)n	Simple_repeat	1	31	(0)	1168038
1724	18.6	1.1	8.7	chr14	49509753	49509808	(57533910)	+	MLT1B	LTR/ERVL-MaLR	340	388	(2)	1168036
19	28.8	0.0	0.0	chr14	51860222	51860277	(55183441)	+	(AAC)n	Simple_repeat	1	56	(0)	1172094
30	0.0	0.0	0.0	chr14	51860686	51860714	(55183004)	+	(GCTGG)n	Simple_repeat	1	29	(0)	1172095
15	22.0	2.0	2.0	chr14	52695751	52695799	(54347919)	+	(CCCCG)n	Simple_repeat	1	50	(0)	1173340
485	28.4	13.9	9.8	chr14	54487726	54488140	(52555578)	C	L2	LINE/L2	(1028)	2391	1933	1175994
692	26.4	6.6	7.2	chr14	54632349	54632682	(52411036)	C	L1ME4b	LINE/L1	(31)	861	530	1176252
1739	10.9	0.4	0.0	chr14	61505446	61505674	(45538044)	C	AluSp	SINE/Alu	(83)	230	1	1186612
1840	19.6	0.3	8.3	chr14	61505675	61505828	(45537890)	C	MLT1A0	LTR/ERVL-MaLR	(214)	151	1	1186610
521	29.3	12.7	7.1	chr14	64754236	64754426	(42289292)	+	LTR78B	LTR/ERV1	1	213	(1083)	1191864
332	30.2	6.9	4.1	chr14	64754427	64754595	(42289123)	+	MER5B	DNA/hAT-Charlie	1	174	(4)	1191865
244	11.1	19.6	0.0	chr14	68741113	68741157	(38302561)	+	MLT1I	LTR/ERVL-MaLR	71	126	(322)	1198178
329	23.8	0.0	3.5	chr14	68741301	68741387	(38302331)	+	MLT1I	LTR/ERVL-MaLR	322	405	(6)	1198178
371	26.9	6.5	0.0	chr14	68994084	68994213	(38049505)	C	MIRb	SINE/MIR	(10)	258	120	1198637
647	27.5	10.5	4.6	chr14	68994221	68994567	(38049151)	C	MLT1I	LTR/ERVL-MaLR	(3)	408	39	1198638
1745	13.8	1.4	3.1	chr14	73836278	73836567	(33207151)	+	AluJo	SINE/Alu	28	312	(0)	1207184
313	21.5	1.8	23.0	chr14	73836568	73836657	(33207061)	C	LTR16C	LTR/ERVL	(41)	448	381	1207183
491	27.7	20.0	1.5	chr14	73836642	73836841	(33206877)	C	MLT2E	LTR/ERVL	(389)	274	38	1207185
433	30.9	9.5	5.6	chr14	73836929	73837302	(33206416)	C	MamGypLTR1c	LTR/Gypsy	(57)	746	357	1207186
491	29.6	5.6	5.1	chr14	75318905	75319082	(31724636)	C	MIR	SINE/MIR	(69)	193	15	1210203
649	25.5	14.4	3.6	chr14	75319185	75319461	(31724257)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	98	1210204
906	28.9	6.3	4.2	chr14	75424360	75424760	(31618958)	+	MLT1I	LTR/ERVL-MaLR	2	411	(0)	1210440
694	19.7	12.4	5.7	chr14	75424761	75424833	(31618885)	C	MER102b	DNA/hAT-Charlie	(159)	182	116	1210439
792	16.8	0.0	3.6	chr14	75424853	75424989	(31618729)	C	FLAM_A	SINE/Alu	(8)	134	3	1210441
135	1.6	0.8	0.0	chr14	77269669	77269795	(29773923)	+	(TC)n	Simple_repeat	1	128	(0)	1213918
25	0.0	0.0	0.0	chr14	77269796	77269822	(29773896)	+	(C)n	Simple_repeat	1	27	(0)	1213919
529	28.8	2.5	2.5	chr14	77269823	77269979	(29773739)	C	MIR	SINE/MIR	(43)	219	63	1213920
28	15.2	4.7	1.5	chr14	77646830	77646870	(29396848)	+	(TA)n	Simple_repeat	1	43	(0)	1214644
386	23.7	11.1	1.2	chr14	77646875	77647045	(29396673)	C	Charlie15b	DNA/hAT-Charlie	(90)	971	782	1214645
1025	27.4	10.4	3.0	chr14	77647053	77647383	(29396335)	C	MLT1I	LTR/ERVL-MaLR	(7)	404	42	1214646
2109	15.2	0.3	0.0	chr14	77647384	77647692	(29396026)	+	AluSz	SINE/Alu	1	310	(2)	1214647
353	26.9	0.0	1.9	chr14	90426574	90426679	(16617039)	+	MLT1K	LTR/ERVL-MaLR	482	585	(10)	1233887
20	27.5	0.0	3.0	chr14	92748493	92748559	(14295159)	+	(GGC)n	Simple_repeat	1	67	(0)	1238154
239	25.9	0.0	0.0	chr14	92748911	92748964	(14294754)	C	MER5B	DNA/hAT-Charlie	(10)	168	115	1238155
618	25.0	10.5	1.6	chr14	93084274	93084464	(13959254)	+	MER20	DNA/hAT-Charlie	4	213	(6)	1238759
239	13.2	0.0	0.0	chr14	93084582	93084619	(13959099)	+	MLT1I	LTR/ERVL-MaLR	372	409	(2)	1238760
336	34.6	0.7	1.4	chr14	95014871	95015008	(12028710)	C	MIR3	SINE/MIR	(28)	180	44	1242309
936	25.1	9.6	5.5	chr14	95015062	95015461	(12028257)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	31	1242310
16	24.7	3.5	5.7	chr14	95272240	95272324	(11771394)	+	GA-rich	Low_complexity	1	88	(0)	1242706
223	29.4	0.0	5.6	chr14	95272436	95272507	(11771211)	C	L2b	LINE/L2	(0)	3375	3308	1242707
717	30.1	7.9	8.3	chr14	96272580	96272988	(10770730)	+	MLT1I	LTR/ERVL-MaLR	1	407	(4)	1244591
839	27.4	8.2	7.8	chr14	96273025	96273448	(10770270)	+	LTR79	LTR/ERVL	72	497	(30)	1244592
2265	11.4	0.0	0.9	chr14	99987360	99987674	(7056044)	+	AluSx	SINE/Alu	1	312	(0)	1250969
1853	17.1	3.6	4.1	chr14	99987675	99987880	(7055838)	+	MLT1A0	LTR/ERVL-MaLR	151	365	(0)	1250968
4341	15.1	4.3	7.7	chr14	99987881	99987905	(7055813)	+	L1MB8	LINE/L1	5287	5305	(873)	1250967
2143	11.6	0.0	0.3	chr14	99987906	99988215	(7055503)	C	AluSp	SINE/Alu	(0)	313	1	1250970
362	30.3	7.6	5.2	chr14	101481912	101482297	(5561421)	+	MLT1I	LTR/ERVL-MaLR	16	411	(0)	1253203
1143	28.4	8.1	1.3	chr14	101482305	101483126	(5560592)	+	L1MEd	LINE/L1	398	1345	(5741)	1253202
2251	6.7	4.8	1.1	chr15	20340242	20344102	(81647087)	+	(AGCCAGCCA)n	Simple_repeat	1	4048	(0)	1263201
1723	21.2	2.2	2.2	chr15	39915124	39915494	(62075695)	C	MLT1A	LTR/ERVL-MaLR	(0)	374	4	1290380
20	8.6	5.4	0.0	chr15	47717493	47717529	(54273660)	+	(TGC)n	Simple_repeat	1	39	(0)	1303776
1749	13.9	3.3	4.2	chr15	66044571	66044880	(35946309)	+	AluJr	SINE/Alu	6	312	(0)	1333890
461	28.6	3.6	7.8	chr15	66045032	66045236	(35945953)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	253	1333891
443	29.3	1.5	1.5	chr15	66686179	66686342	(35304847)	+	MIRb	SINE/MIR	2	160	(48)	1335249
807	26.2	7.2	10.4	chr15	66686721	66687077	(35304112)	C	MLT1I	LTR/ERVL-MaLR	(4)	407	63	1335250
2293	13.5	0.0	0.0	chr15	67550760	67551071	(34440118)	C	AluSz6	SINE/Alu	(0)	312	1	1336796
317	31.1	1.6	4.8	chr15	70484939	70485063	(31506126)	C	L2a	LINE/L2	(13)	3413	3293	1342238
385	23.6	8.3	0.9	chr15	70485178	70485288	(31505901)	C	MLT1I	LTR/ERVL-MaLR	(6)	405	286	1342239
19	6.3	2.9	2.8	chr15	72474428	72474462	(29516727)	+	(CCCT)n	Simple_repeat	1	36	(0)	1345546
21	19.5	3.3	1.6	chr15	72474519	72474578	(29516611)	+	(CGGAGC)n	Simple_repeat	1	62	(0)	1345547
25	27.0	1.0	4.0	chr15	72474642	72474752	(29516437)	+	(GGACGA)n	Simple_repeat	1	107	(0)	1345548
406	28.5	3.6	12.3	chr15	76311786	76311932	(25679257)	+	L2b	LINE/L2	3164	3311	(76)	1352366
14	4.0	7.7	0.0	chr15	77420098	77420123	(24571066)	+	(ACTA)n	Simple_repeat	1	28	(0)	1354018
30	26.2	1.9	1.9	chr15	77420146	77420248	(24570941)	+	(CGCC)n	Simple_repeat	1	105	(0)	1354019
20	28.1	5.2	0.0	chr15	77420206	77420282	(24570907)	+	(CG)n	Simple_repeat	1	81	(0)	1354020
1275	25.9	7.1	2.0	chr15	77653921	77654310	(24336879)	+	MLT1I	LTR/ERVL-MaLR	1	411	(0)	1354412
488	35.2	6.6	0.4	chr15	77654311	77654443	(24336746)	C	MIRb	SINE/MIR	(111)	157	24	1354411
527	27.1	4.8	0.6	chr15	79082409	79082568	(22908621)	+	MLT1I	LTR/ERVL-MaLR	245	411	(0)	1357208
356	29.5	3.1	5.5	chr15	79082569	79082733	(22908456)	C	L2	LINE/L2	(679)	2740	2580	1357207
1881	19.9	1.0	1.0	chr15	81835520	81835831	(20155358)	+	AluJr	SINE/Alu	1	312	(0)	1361882
328	37.1	3.7	7.5	chr15	81835832	81836110	(20155079)	+	L1M6	LINE/L1	2702	2977	(3423)	1361880
1750	14.5	0.3	6.1	chr15	85021261	85021570	(16969619)	+	AluJr	SINE/Alu	2	293	(19)	1367135
1805	14.4	8.5	3.2	chr15	85021571	85021620	(16969569)	+	MLT1A0	LTR/ERVL-MaLR	316	365	(0)	1367134
2918	19.9	6.5	4.3	chr15	85021621	85022143	(16969046)	C	L1MC4	LINE/L1	(354)	7688	7161	1367133
4193	9.4	1.3	4.9	chr15	89067063	89067690	(12923499)	C	LTR14B	LTR/ERVK	(0)	608	4	1373573
232	30.6	0.0	0.0	chr15	95247177	95247248	(6743941)	C	MLT1H	LTR/ERVL-MaLR	(0)	549	478	1384162
3316	12.4	7.4	0.5	chr15	95247379	95247929	(6743260)	C	LTR12	LTR/ERV1	(234)	592	1	1384163
442	10.8	0.0	0.0	chr15	98410514	98410578	(3580611)	C	MLT1I	LTR/ERVL-MaLR	(3)	408	344	1388595
271	37.0	6.0	1.9	chr15	98410609	98410864	(3580325)	C	MLT1I	LTR/ERVL-MaLR	(144)	267	1	1388595
17	11.3	0.0	0.0	chr15	101007004	101007032	(984157)	+	(ACAG)n	Simple_repeat	1	29	(0)	1392220
1986	23.2	4.3	2.9	chr15	101007485	101007879	(983310)	C	MER89	LTR/ERV1	(1)	558	161	1392221
235	23.8	3.1	0.0	chr15	101530359	101530421	(460768)	+	MLT1N2	LTR/ERVL-MaLR	464	528	(34)	1392906
198	25.0	6.4	7.4	chr16	1092180	1092274	(89246071)	+	L2b	LINE/L2	3263	3356	(19)	1395493
2421	6.3	1.0	0.3	chr16	3263367	3263666	(87074679)	C	AluSx4	SINE/Alu	(8)	302	1	1398853
204	27.9	9.0	0.0	chr16	3263872	3263932	(87074413)	+	MIRc	SINE/MIR	82	148	(120)	1398854
326	15.8	0.0	1.7	chr16	19021901	19021958	(71316387)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	355	1432479
353	20.4	24.6	0.0	chr16	19022024	19022121	(71316224)	C	MLT1I	LTR/ERVL-MaLR	(66)	345	216	1432479
1426	22.6	7.3	7.9	chr16	19097893	19098372	(71239973)	+	MLT1H	LTR/ERVL-MaLR	72	548	(1)	1432687
682	26.9	13.2	0.0	chr16	19098374	19098589	(71239756)	C	MLT1K	LTR/ERVL-MaLR	(343)	252	4	1432686
297	22.8	3.6	4.8	chr16	19967894	19967976	(70370369)	C	MIR	SINE/MIR	(21)	241	160	1434804
759	29.6	5.3	2.7	chr16	19968159	19968453	(70369892)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	107	1434805
26	24.1	1.4	1.4	chr16	27145512	27145581	(63192764)	+	GA-rich	Low_complexity	1	71	(0)	1450461
632	22.1	0.7	5.2	chr16	27145814	27145966	(63192379)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	266	1450462
914	20.2	1.6	12.1	chr16	27146028	27146308	(63192037)	C	MER63D	DNA/hAT-Blackjack	(0)	1061	811	1450463
834	19.3	0.0	0.0	chr16	27171497	27171668	(63166677)	+	FLAM_A	SINE/Alu	1	142	(0)	1450537
236	7.9	0.0	11.6	chr16	27171709	27171751	(63166594)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	411	1450538
381	28.0	4.7	7.1	chr16	27171766	27171960	(63166385)	C	MLT1J2	LTR/ERVL-MaLR	(2)	446	257	1450539
855	29.6	0.5	0.0	chr16	27171961	27172180	(63166165)	C	MER58A	DNA/hAT-Charlie	(0)	224	4	1450540
380	23.9	7.4	6.1	chr16	30813968	30814115	(59524230)	C	MIR3	SINE/MIR	(23)	185	33	1458924
23	9.1	0.0	0.0	chr16	30814728	30814763	(59523582)	+	(TTCC)n	Simple_repeat	1	36	(0)	1458925
1619	16.4	7.4	0.0	chr16	30814766	30815052	(59523293)	C	AluSg	SINE/Alu	(0)	310	1	1458926
2357	5.0	5.4	2.5	chr16	33335927	33340033	(56998312)	+	(TGGCTTGGC)n	Simple_repeat	1	4327	(0)	1462585
330	24.4	1.2	2.4	chr16	34071698	34071779	(56266566)	+	AluJb	SINE/Alu	208	288	(24)	1463578
3033	14.4	0.2	1.8	chr16	49428394	49428895	(40909450)	C	LTR72B	LTR/ERV1	(0)	500	7	1470517
369	13.8	0.0	0.0	chr16	49428968	49429025	(40909320)	+	MLT1I	LTR/ERVL-MaLR	354	411	(0)	1470516
198	31.8	17.8	5.5	chr16	49429029	49429721	(40908624)	+	L2c	LINE/L2	2114	2910	(509)	1470518
926	30.3	10.1	1.9	chr16	54297302	54297641	(36040704)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	40	1479253
180	27.1	12.7	6.8	chr16	54867372	54867474	(35470871)	+	MIRb	SINE/MIR	20	129	(139)	1480311
445	33.7	5.9	3.1	chr16	54867476	54867878	(35470467)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	1480312
29	23.6	4.8	1.8	chr16	57479737	57479841	(32858504)	+	(TCCC)n	Simple_repeat	1	110	(0)	1485142
2276	9.2	0.0	0.3	chr16	58074417	58074721	(32263624)	+	AluY	SINE/Alu	1	304	(7)	1486397
1853	20.5	3.5	4.2	chr16	58074722	58074841	(32263504)	C	MSTB1	LTR/ERVL-MaLR	(306)	126	4	1486396
5167	20.3	4.2	10.6	chr16	58074875	58075050	(32263295)	+	MLT1C-int	LTR/ERVL-MaLR	1	153	(1218)	1486394
38	0.0	0.0	0.0	chr16	58075051	58075085	(32263260)	+	(ATAG)n	Simple_repeat	1	35	(0)	1486398
5167	20.3	4.2	10.6	chr16	58075086	58075108	(32263237)	+	MLT1C-int	LTR/ERVL-MaLR	154	168	(1203)	1486394
18	20.7	4.2	4.0	chr16	74606844	74606915	(15731430)	+	(TGCTGA)n	Simple_repeat	1	75	(0)	1515037
19	19.7	0.0	0.0	chr16	79047395	79047436	(11290909)	+	(GATT)n	Simple_repeat	1	42	(0)	1522875
582	15.8	0.0	0.0	chr16	79047548	79047642	(11290703)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	411	1522876
31	0.0	0.0	0.0	chr16	79047673	79047701	(11290644)	+	(T)n	Simple_repeat	1	29	(0)	1522877
653	28.2	2.5	2.6	chr16	83890266	83890462	(6447883)	+	MIR	SINE/MIR	68	262	(0)	1531795
1889	20.5	11.3	4.1	chr16	83890550	83891016	(6447329)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	1	1531796
2005	19.6	3.8	4.1	chr16	84244415	84244921	(6093424)	+	MLT1D	LTR/ERVL-MaLR	1	505	(0)	1532422
596	30.1	4.9	0.5	chr16	84245083	84245276	(6093069)	+	MIRb	SINE/MIR	66	268	(0)	1532423
1153	24.7	7.4	3.6	chr16	84951004	84951393	(5386952)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	6	1533905
524	22.8	14.6	2.0	chr16	85547231	85547499	(4790846)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	167	1535038
440	31.3	9.9	1.7	chr16	86168574	86168869	(4169476)	C	LTR88b	LTR/Gypsy?	(415)	422	100	1536168
302	29.1	0.0	0.0	chr16	86168992	86169077	(4169268)	C	MLT1I	LTR/ERVL-MaLR	(6)	405	320	1536169
287	32.9	10.3	2.8	chr17	4730608	4730857	(78526584)	+	L2	LINE/L2	2795	3065	(354)	1553635
1913	9.8	1.8	0.0	chr17	4730911	4731186	(78526255)	+	AluSx1	SINE/Alu	15	295	(17)	1553636
1459	22.3	7.3	5.0	chr17	14258575	14259050	(68998391)	C	MLT1E1A	LTR/ERVL-MaLR	(2)	678	83	1571131
278	19.6	0.0	0.0	chr17	14259186	14259231	(68998210)	C	MLT1I	LTR/ERVL-MaLR	(6)	405	360	1571132
2271	11.8	0.3	0.0	chr17	14259243	14259547	(68997894)	C	AluSc8	SINE/Alu	(5)	306	1	1571133
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
15	13.9	0.0	0.0	chr17	29292400	29292423	(53965018)	+	(T)n	Simple_repeat	1	24	(0)	1590284
883	8.2	0.0	0.0	chr17	29362966	29363075	(53894366)	+	AluSx	SINE/Alu	194	303	(9)	1590486
2340	9.2	0.0	1.6	chr17	29363077	29363393	(53894048)	+	AluSx1	SINE/Alu	1	312	(0)	1590487
1475	22.0	2.7	7.4	chr17	29363412	29363477	(53893964)	C	MLT1A	LTR/ERVL-MaLR	(0)	374	314	1590488
2368	10.5	0.0	0.0	chr17	29363478	29363782	(53893659)	+	AluSx1	SINE/Alu	1	305	(7)	1590489
23	18.9	3.5	5.6	chr17	31095059	31095145	(52162296)	+	(CCCCCT)n	Simple_repeat	1	90	(0)	1593994
21	6.7	0.0	0.0	chr17	31095479	31095510	(52161931)	+	(GGAAG)n	Simple_repeat	1	32	(0)	1593995
12	30.2	7.3	0.0	chr17	31095511	31095557	(52161884)	+	GA-rich	Low_complexity	4	88	(0)	1593996
993	4.0	0.0	0.0	chr17	32822870	32822994	(50434447)	+	L1PA5	LINE/L1	6030	6154	(0)	1597471
471	23.6	4.8	2.0	chr17	34203189	34203335	(49054106)	C	MLT1I	LTR/ERVL-MaLR	(0)	448	293	1600052
262	19.5	14.4	0.0	chr17	34203400	34203476	(49053965)	C	MLT1I	LTR/ERVL-MaLR	(290)	158	69	1600052
760	29.9	4.7	5.9	chr17	36840629	36841015	(46416426)	+	MLT1I	LTR/ERVL-MaLR	30	411	(0)	1604764
277	15.2	2.1	0.0	chr17	36841016	36841061	(46416380)	C	MLT1M	LTR/ERVL-MaLR	(411)	261	215	1604765
246	25.0	1.6	1.6	chr17	36841106	36841166	(46416275)	C	MLT1M	LTR/ERVL-MaLR	(469)	203	143	1604765
2627	17.8	4.4	1.0	chr17	41546533	41547020	(41710421)	+	MLT1D	LTR/ERVL-MaLR	1	505	(0)	1613790
643	27.2	9.5	1.9	chr17	41547226	41547536	(41709905)	+	LTR33	LTR/ERVL	1	337	(178)	1613791
1686	24.9	5.6	5.8	chr17	43331853	43332405	(39925036)	C	HERVK13-int	LTR/ERVK	(6632)	1484	933	1617608
1258	28.5	2.0	2.5	chr17	45729823	45730222	(37527219)	+	LTR16C	LTR/ERVL	67	464	(25)	1622673
587	27.9	11.8	7.4	chr17	45730216	45730432	(37527009)	+	MLT1I	LTR/ERVL-MaLR	184	411	(0)	1622672
80	0.0	1.2	2.4	chr17	45730490	45730572	(37526869)	+	(GAAG)n	Simple_repeat	1	84	(0)	1622674
586	19.2	7.9	5.0	chr17	48386431	48386589	(34870852)	C	MER5A1	DNA/hAT-Charlie	(2)	164	1	1627750
29	20.6	0.0	1.6	chr17	49678022	49678084	(33579357)	+	(AC)n	Simple_repeat	1	63	(0)	1630372
18	24.8	0.0	1.9	chr17	49678139	49678192	(33579249)	+	(CCCCT)n	Simple_repeat	1	54	(0)	1630373
1774	17.3	7.7	8.7	chr17	51060116	51060222	(32197219)	+	MLT1B	LTR/ERVL-MaLR	1	110	(280)	1633008
2351	11.8	0.7	1.0	chr17	51060223	51060527	(32196914)	+	AluSx1	SINE/Alu	1	304	(8)	1633009
1774	17.3	7.7	8.7	chr17	51060528	51060812	(32196629)	+	MLT1B	LTR/ERVL-MaLR	111	389	(1)	1633008
2585	8.2	0.0	0.3	chr17	51060839	51061141	(32196300)	C	AluSc	SINE/Alu	(3)	306	5	1633010
17	18.0	1.5	8.7	chr17	56978024	56978091	(26279350)	+	(CCCAGC)n	Simple_repeat	1	69	(0)	1642369
23	17.4	2.4	7.1	chr17	56978092	56978102	(26279339)	+	(CCGCC)n	Simple_repeat	4	84	(0)	1642370
16	31.3	5.3	0.0	chr17	56978129	56978222	(26279219)	+	(CTGCTG)n	Simple_repeat	1	99	(0)	1642371
501	24.0	3.0	3.7	chr17	72534373	72534506	(10722935)	+	MLT1I	LTR/ERVL-MaLR	279	411	(0)	1670558
753	26.7	7.9	8.6	chr17	72534631	72535036	(10722405)	+	L2b	LINE/L2	2972	3374	(1)	1670559
1761	11.8	7.1	0.8	chr17	73004987	73005277	(10252164)	C	AluSx	SINE/Alu	(0)	312	1	1671416
258	34.0	2.1	2.1	chr17	73005374	73005469	(10251972)	C	MIRb	SINE/MIR	(1)	267	172	1671417
226	25.0	0.0	0.0	chr17	73005515	73005562	(10251879)	C	MLT1I	LTR/ERVL-MaLR	(1)	410	363	1671418
2152	10.5	0.0	1.0	chr17	73005677	73005971	(10251470)	+	AluSx3	SINE/Alu	11	302	(9)	1671419
299	31.2	6.1	10.7	chr17	77233707	77233997	(6023444)	+	MLT1J2	LTR/ERVL-MaLR	135	448	(0)	1679691
238	23.8	0.0	16.5	chr17	77234120	77234240	(6023201)	C	L2a	LINE/L2	(469)	2950	2850	1679690
532	28.7	1.2	0.0	chr17	77317131	77317297	(5940144)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	337	1679871
2608	10.0	1.6	12.7	chr17	77317314	77317770	(5939671)	+	MER1A	DNA/hAT-Charlie	42	435	(94)	1679872
2194	17.5	7.1	2.9	chr17	80029730	80030211	(3227230)	C	MLT1D	LTR/ERVL-MaLR	(1)	504	1	1684329
2365	10.1	0.0	0.0	chr17	80289308	80289613	(2967828)	+	AluSq	SINE/Alu	1	306	(7)	1684827
240	23.5	8.0	3.6	chr17	81184109	81184192	(2073249)	+	L2a	LINE/L2	2671	2758	(661)	1685956
626	30.0	8.6	2.6	chr17	81184267	81184615	(2072826)	+	L2a	LINE/L2	2918	3289	(137)	1685956
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
423	23.3	0.0	0.0	chr18	10233226	10233311	(70139974)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	326	1704290
849	24.2	3.5	0.0	chr18	10233375	10233564	(70139721)	+	MER58A	DNA/hAT-Charlie	18	214	(10)	1704291
1025	17.2	0.0	0.0	chr18	23690652	23690825	(56682460)	C	AluJr	SINE/Alu	(53)	259	86	1716685
286	9.5	0.0	0.4	chr18	23690827	23690867	(56682418)	C	AluSx	SINE/Alu	(52)	250	211	1716686
56	0.0	0.0	0.0	chr18	23690873	23690922	(56682363)	+	(TTAT)n	Simple_repeat	1	50	(0)	1716687
559	18.4	0.0	0.0	chr18	23690923	23691009	(56682276)	C	AluJr	SINE/Alu	(189)	123	37	1716688
36	0.0	0.0	2.6	chr18	31943294	31943331	(48429954)	+	(GCGGGG)n	Simple_repeat	1	38	(0)	1728480
25	8.6	0.0	2.6	chr18	34493213	34493251	(45880034)	+	(TG)n	Simple_repeat	1	39	(0)	1732026
13	15.8	2.7	2.6	chr18	34493261	34493297	(45879988)	+	GA-rich	Low_complexity	1	38	(0)	1732027
1917	18.6	6.3	5.0	chr18	35392120	35392617	(44980668)	+	MLT1D	LTR/ERVL-MaLR	1	505	(0)	1733248
5670	16.3	2.4	1.8	chr18	35392618	35394498	(44978787)	C	L1MB7	LINE/L1	(39)	6145	4250	1733247
1024	18.7	7.3	0.5	chr18	51041418	51041621	(29331664)	C	MER20	DNA/hAT-Charlie	(0)	219	1	1756265
925	23.7	11.5	7.4	chr18	51041622	51041900	(29331385)	+	MLT1I	LTR/ERVL-MaLR	103	410	(1)	1756264
626	22.2	24.7	0.5	chr18	51042027	51042234	(29331051)	+	MER20B	DNA/hAT-Charlie	2	276	(507)	1756266
28122	17.0	7.8	7.8	chr18	52790112	52792754	(27580531)	C	HUERS-P3b-int	LTR/ERV1	(7)	2901	90	1758952
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
1079	29.4	1.9	0.3	chr18	61932149	61932455	(18440830)	C	MLT1I	LTR/ERVL-MaLR	(1)	410	99	1772681
1031	26.8	13.8	2.2	chr18	79200300	79200694	(1172591)	+	L1MEf	LINE/L1	2654	3070	(3249)	1795300
2371	5.9	0.0	0.7	chr19	2256654	2256942	(56360674)	C	AluY	SINE/Alu	(22)	289	3	1800401
1004	9.4	0.0	14.1	chr19	2256943	2257086	(56360530)	C	AluSz	SINE/Alu	(175)	137	9	1800400
221	31.4	8.1	2.8	chr19	2497228	2497368	(56120248)	C	MIR3	SINE/MIR	(58)	150	2	1800941
1028	22.6	1.6	0.8	chr19	2497408	2497657	(56119959)	C	MLT1D	LTR/ERVL-MaLR	(1)	504	253	1800942
1134	24.6	14.2	4.3	chr19	2604937	2605193	(56012423)	C	MLT1D	LTR/ERVL-MaLR	(1)	504	190	1801219
2210	12.5	0.0	0.3	chr19	2605194	2605498	(56012118)	C	AluSx1	SINE/Alu	(8)	304	1	1801220
787	25.2	5.9	4.4	chr19	3691298	3691616	(54926000)	+	MER74B	LTR/ERVL	78	401	(221)	1803793
310	23.2	8.3	1.0	chr19	3691626	3691725	(54925891)	+	MER74B	LTR/ERVL	515	622	(0)	1803793
368	26.1	17.4	1.4	chr19	3692082	3692225	(54925391)	C	MIR	SINE/MIR	(12)	250	79	1803794
2051	18.7	1.9	0.6	chr19	7716840	7717199	(50900417)	+	MLT1A0	LTR/ERVL-MaLR	1	365	(0)	1813568
1534	21.1	3.2	9.9	chr19	7717200	7717226	(50900390)	C	MLT1D	LTR/ERVL-MaLR	(207)	298	278	1813567
2445	10.0	0.3	0.0	chr19	7717227	7717537	(50900079)	C	AluSp	SINE/Alu	(1)	312	1	1813569
711	21.7	8.2	9.0	chr19	10532363	10532718	(48084898)	+	MLT1J2	LTR/ERVL-MaLR	85	448	(0)	1820011
299	34.0	5.8	5.3	chr19	10532722	10533000	(48084616)	+	L2a	LINE/L2	3117	3426	(0)	1820010
503	17.6	6.1	0.0	chr19	13246122	13246229	(45371387)	+	MIR	SINE/MIR	41	155	(107)	1826235
676	28.9	15.8	2.2	chr19	13246263	13246577	(45371039)	+	MLT1I	LTR/ERVL-MaLR	46	411	(0)	1826236
2442	7.4	0.0	0.3	chr19	13246628	13246925	(45370691)	C	AluY	SINE/Alu	(14)	297	1	1826237
980	28.4	7.8	3.0	chr19	13256833	13257162	(45360454)	+	MLT1I	LTR/ERVL-MaLR	65	411	(0)	1826269
620	27.0	10.4	2.4	chr19	13921004	13921440	(44696176)	C	MLT1J	LTR/ERVL-MaLR	(0)	448	2	1828127
2163	12.2	0.3	2.6	chr19	17834066	17834376	(40783240)	+	AluSx	SINE/Alu	1	304	(8)	1837397
49	0.0	0.0	0.0	chr19	18462180	18462221	(40155395)	+	(GT)n	Simple_repeat	1	42	(0)	1838914
592	27.3	10.6	3.6	chr19	31559453	31559733	(27057883)	+	MLT1I	LTR/ERVL-MaLR	109	411	(0)	1853413
696	32.4	9.5	5.6	chr19	31559735	31560259	(27057357)	+	L2b	LINE/L2	2828	3375	(0)	1853414
3070	16.5	2.6	2.3	chr19	33184040	33184532	(25433084)	C	ERVL-B4-int	LTR/ERVL	(624)	5090	4599	1856370
2158	7.7	7.7	0.0	chr19	33184533	33184818	(25432798)	+	AluSg	SINE/Alu	1	310	(0)	1856371
411	23.5	0.0	8.5	chr19	33373111	33373240	(25244376)	+	SVA_E	Retroposon/SVA	194	312	(1070)	1856705
767	12.5	0.0	0.9	chr19	33373142	33373253	(25244363)	C	AluJo	SINE/Alu	(196)	116	6	1856706
574	19.8	6.3	2.9	chr19	35607628	35607827	(23009789)	+	Charlie10	DNA/hAT-Charlie	59	263	(0)	1860759
353	20.0	1.2	6.6	chr19	35607855	35607926	(23009690)	C	MLT1J1	LTR/ERVL-MaLR	(0)	444	377	1860760
2287	9.5	0.0	0.7	chr19	35607927	35608231	(23009385)	C	AluSp	SINE/Alu	(10)	303	1	1860761
2323	10.2	0.7	0.3	chr19	35760476	35760778	(22856838)	C	AluSq	SINE/Alu	(1)	312	9	1861084
355	25.5	1.9	0.9	chr19	35760785	35760891	(22856725)	+	MIR	SINE/MIR	136	243	(19)	1861081
532	24.5	4.7	4.7	chr19	35760898	35761111	(22856505)	C	MLT1J	LTR/ERVL-MaLR	(9)	503	290	1861085
429	25.5	4.4	6.1	chr19	35761154	35761253	(22856363)	C	MLT1J	LTR/ERVL-MaLR	(350)	162	65	1861085
2311	10.8	0.7	0.0	chr19	40723492	40723796	(17893820)	C	AluSx	SINE/Alu	(5)	307	1	1871798
1257	24.5	10.5	1.9	chr19	40723833	40724125	(17893491)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	101	1871799
1802	16.7	5.8	0.0	chr19	40724126	40724418	(17893198)	+	AluJr	SINE/Alu	1	311	(1)	1871800
31	0.0	0.0	0.0	chr19	42370844	42370872	(16246744)	+	(G)n	Simple_repeat	1	29	(0)	1875128
850	30.1	3.5	6.7	chr19	43452339	43452770	(15164846)	C	L2b	LINE/L2	(143)	3232	2830	1876799
501	14.1	1.2	0.0	chr19	43452828	43452905	(15164711)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	333	1876805
1916	16.5	0.3	2.5	chr19	43452906	43453221	(15164395)	+	AluJr4	SINE/Alu	1	309	(3)	1876806
354	32.7	8.0	3.0	chr19	44071534	44071795	(14545821)	+	L2	LINE/L2	506	781	(2638)	1878151
756	11.8	1.6	0.0	chr19	44634710	44634828	(13982788)	+	AluSx	SINE/Alu	192	312	(0)	1879173
257	34.0	0.0	1.9	chr19	44634835	44634939	(13982677)	+	MIRb	SINE/MIR	150	252	(16)	1879177
1604	20.4	5.2	2.6	chr19	44634964	44635341	(13982275)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	3	1879178
2310	9.0	0.0	0.0	chr19	45355075	45355363	(13262253)	+	AluSx1	SINE/Alu	1	289	(23)	1881082
616	31.9	7.8	3.4	chr19	45355364	45355618	(13261998)	+	MLT1I	LTR/ERVL-MaLR	141	411	(0)	1881081
479	29.1	9.6	4.5	chr19	45355785	45355817	(13261799)	C	MIRb	SINE/MIR	(18)	250	223	1881083
1477	10.0	0.0	1.9	chr19	47288586	47288795	(11328821)	+	AluSx3	SINE/Alu	95	300	(11)	1885760
323	25.9	6.7	2.6	chr19	47288796	47288910	(11328706)	+	LTR101_Mam	LTR/ERVL	342	461	(368)	1885759
769	16.7	0.0	0.8	chr19	47289029	47289154	(11328462)	+	AluJr	SINE/Alu	1	125	(187)	1885761
2209	17.0	11.3	0.2	chr19	47342944	47343392	(11274224)	+	MLT1D	LTR/ERVL-MaLR	1	505	(0)	1885928
871	26.2	3.4	0.0	chr19	47343465	47343523	(11274093)	C	MER3	DNA/hAT-Charlie	(0)	209	151	1885929
1862	14.1	0.0	9.4	chr19	47343524	47343863	(11273753)	+	AluJo	SINE/Alu	1	308	(4)	1885930
1971	13.2	2.6	4.4	chr19	47704480	47704797	(10912819)	+	AluSx	SINE/Alu	1	312	(0)	1886822
1118	22.8	12.3	13.9	chr19	47704808	47705167	(10912449)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	94	1886823
2297	11.6	0.0	0.3	chr19	48189925	48190226	(10427390)	+	AluSx1	SINE/Alu	5	305	(7)	1888160
967	26.4	11.4	3.2	chr19	48190313	48190688	(10426928)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	1888161
126	0.8	3.8	0.0	chr19	54168772	54168903	(4448713)	+	(TTTCT)n	Simple_repeat	1	137	(0)	1901212
1879	12.6	4.7	0.7	chr19	55424302	55424587	(3193029)	+	AluSq	SINE/Alu	1	298	(15)	1903716
1304	23.2	4.8	6.5	chr19	55424689	55425089	(3192527)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	16	1903717
1067	12.4	2.1	7.5	chr19	57172534	57172693	(1444923)	+	MER4D1	LTR/ERV1	1	151	(749)	1907367
1197	24.4	4.1	2.8	chr2	1701696	1702054	(240491475)	+	MLT1A0	LTR/ERVL-MaLR	2	365	(0)	1912426
558	24.6	14.3	4.2	chr2	8614562	8614887	(233578642)	+	MLT1J1	LTR/ERVL-MaLR	64	443	(5)	1921645
427	30.3	3.6	2.6	chr2	10230531	10230723	(231962806)	+	MLT1J2	LTR/ERVL-MaLR	253	447	(1)	1924430
294	25.2	6.4	1.5	chr2	10230728	10230822	(231962707)	+	MIRb	SINE/MIR	162	256	(6)	1924431
94	27.7	0.6	4.2	chr2	11155100	11155450	(231038079)	+	G-rich	Low_complexity	1	353	(0)	1926128
619	25.5	8.9	0.0	chr2	15679155	15679307	(226514222)	C	MER58B	DNA/hAT-Charlie	(0)	341	174	1933104
418	22.3	1.8	5.1	chr2	15679320	15679441	(226514088)	+	MER3	DNA/hAT-Charlie	6	98	(111)	1933105
540	24.5	8.9	0.0	chr2	15679453	15679615	(226513914)	+	MLT1I	LTR/ERVL-MaLR	233	411	(0)	1933103
388	32.6	1.6	3.7	chr2	15679616	15679815	(226513714)	+	L2c	LINE/L2	2968	3166	(221)	1933106
329	31.8	12.0	5.3	chr2	24772173	24772514	(217421015)	C	L2c	LINE/L2	(0)	3387	3020	1946703
12	19.6	3.9	5.6	chr2	25042722	25042773	(217150756)	+	(GCG)n	Simple_repeat	1	54	(0)	1947189
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
543	23.0	4.9	2.2	chr2	45284615	45284752	(196908777)	+	MIR	SINE/MIR	6	147	(115)	1980484
470	17.7	0.2	0.1	chr2	45284767	45284860	(196908669)	C	MLT1I	LTR/ERVL-MaLR	(22)	422	320	1980485
973	23.2	1.4	2.8	chr2	45646303	45646519	(196547010)	+	MLT1I	LTR/ERVL-MaLR	196	409	(2)	1981022
256	32.6	2.6	4.5	chr2	47505959	47506102	(194687427)	C	MIRb	SINE/MIR	(30)	238	93	1984228
468	23.2	0.0	0.0	chr2	47506211	47506305	(194687224)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	317	1984229
1536	20.1	2.5	8.0	chr2	55028949	55029338	(187164191)	+	MLT1A	LTR/ERVL-MaLR	7	374	(0)	1995152
5234	18.0	3.9	6.1	chr2	63078652	63078818	(179114711)	C	L1MB3	LINE/L1	(1919)	4221	4054	2007406
243	32.0	7.9	3.0	chr2	67738692	67738823	(174454706)	C	L2c	LINE/L2	(292)	3095	2957	2014473
388	23.6	1.4	0.0	chr2	67738899	67738970	(174454559)	+	AluJr	SINE/Alu	129	201	(111)	2014474
25174	6.5	0.8	0.2	chr2	67738971	67745083	(174448446)	C	L1PA6	LINE/L1	(4)	6323	195	2014475
1010	30.4	13.5	2.6	chr2	85720154	85720708	(156472821)	C	L2c	LINE/L2	(83)	3304	2692	2041369
887	23.1	16.8	2.0	chr2	85720709	85721057	(156472472)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	2041370
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
21	8.8	2.8	0.0	chr2	91478098	91478133	(150715396)	+	(CCG)n	Simple_repeat	1	37	(0)	2048369
908	27.4	9.9	1.0	chr2	96006372	96006666	(146186863)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	86	2051440
3096	16.6	1.7	2.9	chr2	101516510	101516977	(140676552)	+	LTR26C	LTR/ERV1	77	539	(0)	2059728
684	30.7	4.5	1.7	chr2	101516978	101517048	(140676481)	+	MLT1I	LTR/ERVL-MaLR	337	405	(6)	2059727
187	23.1	5.8	3.0	chr2	102013229	102013295	(140180234)	+	L3	LINE/CR1	4029	4097	(2)	2060499
552	21.6	0.0	0.0	chr2	102013431	102013527	(140180002)	+	LTR39	LTR/ERV1	624	720	(63)	2060500
47	17.6	0.0	0.0	chr2	102013528	102013608	(140179921)	+	A-rich	Low_complexity	1	81	(0)	2060501
819	27.9	13.6	3.7	chr2	102013622	102013971	(140179558)	C	MLT1I	LTR/ERVL-MaLR	(20)	391	2	2060502
61	22.5	2.4	1.8	chr2	105237906	105238070	(136955459)	+	GA-rich	Low_complexity	1	169	(0)	2064618
2428	5.0	0.0	0.0	chr2	105238203	105238519	(136955010)	C	AluY	SINE/Alu	(0)	311	2	2064619
327	27.6	16.7	0.6	chr2	109234302	109234472	(132959057)	+	MER103C	DNA/hAT-Charlie	94	297	(0)	2070479
421	30.1	1.4	0.0	chr2	109234530	109234672	(132958857)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	267	2070480
243	31.1	9.2	0.0	chr2	109234753	109234871	(132958658)	C	MLT1I	LTR/ERVL-MaLR	(280)	131	1	2070480
19	15.3	3.0	7.2	chr2	127050192	127050258	(115143271)	+	G-rich	Low_complexity	1	69	(0)	2096811
2395	8.1	0.7	0.0	chr2	130984409	130984705	(111208824)	+	AluSx	SINE/Alu	1	299	(13)	2102641
20263	12.1	5.1	3.5	chr2	130984706	130984953	(111208576)	C	LOR1-int	LTR/ERV1	(7665)	455	204	2102634
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
289	20.6	17.7	5.3	chr2	169508074	169508186	(72685343)	C	L2a	LINE/L2	(0)	3426	3297	2155066
9899	11.3	4.4	1.4	chr2	175385241	175386772	(66806757)	+	THE1D-int	LTR/ERVL-MaLR	1	1580	(0)	2164722
560	33.2	9.2	2.9	chr2	216387417	216387801	(25805728)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	37	2222653
980	16.3	1.4	13.3	chr2	216585433	216585673	(25607856)	+	MLT1B	LTR/ERVL-MaLR	179	390	(0)	2223036
12	27.3	2.2	0.0	chr2	216585770	216585814	(25607715)	+	A-rich	Low_complexity	1	46	(0)	2223038
349	21.5	1.9	5.4	chr2	221885561	221885675	(20307854)	+	MLT1I	LTR/ERVL-MaLR	320	442	(6)	2231773
1327	27.6	12.4	4.8	chr2	221885685	221885738	(20307791)	C	L2a	LINE/L2	(553)	2866	2823	2231772
2391	9.7	0.3	0.0	chr2	221885739	221886038	(20307491)	C	AluSx	SINE/Alu	(11)	301	1	2231774
324	22.4	2.7	0.9	chr2	237122106	237122213	(5071316)	C	Zaphod2	DNA/hAT-Tip100	(1263)	2261	2152	2255974
895	28.8	6.9	2.7	chr2	237122287	237122660	(5070869)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	19	2255975
1671	11.8	0.0	0.0	chr2	241547690	241547909	(645620)	C	AluSz	SINE/Alu	(91)	221	2	2261329
237	31.5	6.9	2.4	chr2	241547977	241548184	(645345)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	194	2261330
1789	22.4	6.4	2.5	chr20	3479589	3480036	(60964131)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	1	2268971
349	30.6	9.7	9.1	chr20	3480037	3480120	(60964047)	C	L2b	LINE/L2	(379)	3008	2932	2268970
320	33.8	8.9	7.5	chr20	3480176	3480604	(60963563)	+	MLT1K	LTR/ERVL-MaLR	160	595	(0)	2268972
226	30.2	5.5	10.1	chr20	9087404	9087731	(55356436)	C	LTR78B	LTR/ERV1	(99)	1197	886	2278375
399	36.4	3.4	2.5	chr20	14154802	14155004	(50289163)	+	L2c	LINE/L2	3151	3355	(32)	2286018
2221	11.0	1.3	1.6	chr20	16724636	16724945	(47719222)	C	AluSz	SINE/Alu	(3)	309	1	2289837
792	27.7	8.2	3.6	chr20	16724985	16725076	(47719091)	C	MLT1I	LTR/ERVL-MaLR	(6)	405	298	2289838
57	0.0	0.0	0.0	chr20	16725077	16725125	(47719042)	+	(TG)n	Simple_repeat	1	49	(0)	2289839
792	27.7	8.2	3.6	chr20	16725126	16725418	(47718749)	C	MLT1I	LTR/ERVL-MaLR	(114)	297	1	2289838
272	27.3	16.8	0.0	chr20	18508213	18508311	(45935856)	C	MIR3	SINE/MIR	(55)	153	35	2292788
2081	29.9	5.3	4.2	chr20	25862918	25864200	(38579967)	C	SST1	Satellite/centr	(11)	1552	274	2302870
2308	29.1	5.8	6.1	chr20	25867794	25869361	(38574806)	C	SST1	Satellite/centr	(1)	1562	1	2302878
411	24.8	0.0	9.9	chr20	29411577	29411728	(35032439)	+	LSAU	Satellite	2	138	(360)	2304090
2860	28.3	4.9	5.5	chr20	30283322	30285229	(34158938)	+	SST1	Satellite/centr	1	1895	(14)	2304820
12	15.9	5.7	0.0	chr20	32762320	32762354	(31681813)	+	G-rich	Low_complexity	1	37	(0)	2309235
12	24.6	0.0	2.5	chr20	32762485	32762524	(31681643)	+	G-rich	Low_complexity	1	40	(0)	2309236
1580	25.5	17.3	5.1	chr20	38925727	38925938	(25518229)	C	L2b	LINE/L2	(2063)	1356	1146	2323161
534	29.4	6.0	0.0	chr20	40522291	40522477	(23921690)	+	MIRb	SINE/MIR	13	211	(57)	2325947
739	28.6	7.7	7.8	chr20	40522578	40522955	(23921212)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	24	2325948
2457	8.3	0.0	0.0	chr20	43496349	43496649	(20947518)	+	AluY	SINE/Alu	1	301	(10)	2331304
2097	20.9	3.2	8.4	chr20	43496650	43496718	(20947449)	+	MLT1D	LTR/ERVL-MaLR	449	505	(0)	2331303
882	25.4	9.9	4.8	chr20	43728841	43729192	(20714975)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	40	2331842
512	22.5	11.2	0.7	chr20	44691957	44692099	(19752068)	C	MIRb	SINE/MIR	(30)	238	79	2334099
375	10.9	0.0	0.0	chr20	44692230	44692284	(19751883)	+	MLT1I	LTR/ERVL-MaLR	357	411	(0)	2334100
2538	15.1	3.6	1.2	chr20	44692371	44692859	(19751308)	C	L1MB3	LINE/L1	(3)	6180	5680	2334101
958	24.1	3.4	6.3	chr20	44696276	44696611	(19747556)	+	MLT1I	LTR/ERVL-MaLR	51	411	(0)	2334112
12	4.1	3.5	6.7	chr20	44696617	44696645	(19747522)	+	(CTCCC)n	Simple_repeat	1	30	(0)	2334114
252	12.1	0.0	0.0	chr20	47141282	47141314	(17302853)	C	MER5B	DNA/hAT-Charlie	(1)	177	145	2339308
890	22.7	0.6	0.0	chr20	47141321	47141496	(17302671)	C	MER5B	DNA/hAT-Charlie	(1)	177	1	2339309
826	24.2	7.7	13.2	chr20	47141515	47141847	(17302320)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	99	2339310
852	18.7	22.8	0.0	chr20	49385516	49385774	(15058393)	+	MLT1J	LTR/ERVL-MaLR	5	316	(196)	2344283
233	14.7	0.0	0.0	chr20	49385791	49385824	(15058343)	+	MER58D	DNA/hAT-Charlie	353	386	(0)	2344284
904	30.7	8.0	3.6	chr20	49385907	49386346	(15057821)	+	L2c	LINE/L2	2925	3385	(2)	2344285
11	18.1	2.4	4.8	chr20	49483434	49483474	(14960693)	+	(TCCTCC)n	Simple_repeat	1	42	(0)	2344538
63	8.7	0.0	0.0	chr20	49483476	49483562	(14960605)	+	(CTC)n	Simple_repeat	1	87	(0)	2344539
27	7.9	2.5	0.0	chr20	50818433	50818472	(13625695)	+	(CT)n	Simple_repeat	1	41	(0)	2347820
395	29.8	0.0	0.0	chr20	53013843	53013963	(11430204)	C	L2a	LINE/L2	(0)	3426	3306	2352622
1412	23.0	8.0	2.0	chr20	53014013	53014195	(11429972)	C	MLT1A	LTR/ERVL-MaLR	(0)	374	189	2352623
34	0.0	3.0	0.0	chr20	53014196	53014228	(11429939)	+	(AG)n	Simple_repeat	1	34	(0)	2352624
1412	23.0	8.0	2.0	chr20	53014229	53014395	(11429772)	C	MLT1A	LTR/ERVL-MaLR	(186)	188	1	2352623
237	31.7	8.9	2.7	chr20	57251185	57251372	(7192795)	C	MIR	SINE/MIR	(51)	211	11	2360840
2275	9.7	0.0	0.0	chr20	57251652	57251960	(7192207)	+	AluSz	SINE/Alu	1	309	(3)	2360841
380	16.9	7.2	0.0	chr20	58105804	58105880	(6338287)	+	MLT1I	LTR/ERVL-MaLR	329	411	(0)	2362406
254	29.9	1.5	1.5	chr20	58105942	58106077	(6338090)	+	CR1-16_AMi	LINE/CR1	559	694	(157)	2362411
2461	7.7	0.0	0.0	chr20	62257716	62258014	(2186153)	C	AluSx1	SINE/Alu	(13)	299	1	2368362
2347	6.9	0.0	0.0	chr20	63624716	63625005	(819162)	C	AluSg	SINE/Alu	(20)	290	1	2369780
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
880	13.0	0.0	0.0	chr21	8239093	8239215	(38470768)	C	AluSx3	SINE/Alu	(9)	302	180	2373343
47	0.0	0.0	0.0	chr21	8239234	8239276	(38470707)	+	(T)n	Simple_repeat	1	43	(0)	2373344
37669	0.4	1.2	0.8	chr21	8397807	8401980	(38308003)	+	LSU-rRNA_Hsa	rRNA	878	5034	(1)	2373509
312	38.2	6.5	3.6	chr21	8419786	8420171	(38289812)	C	HAL1	LINE/L1	(1230)	1277	880	2373573
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
74	12.3	0.0	0.0	chr21	9247783	9247915	(37462068)	+	(TGGAA)n	Simple_repeat	1	133	(0)	2374340
378	16.1	3.0	0.2	chr21	9247917	9247990	(37461993)	+	AluJb	SINE/Alu	216	290	(12)	2374341
2132	27.6	17.2	1.8	chr21	9668277	9669949	(37040034)	+	L2a	LINE/L2	1338	3424	(2)	2374695
6053	11.5	18.3	0.0	chr21	9678290	9679313	(37030670)	C	LTR12D	LTR/ERV1	(0)	1254	1	2374710
1562	29.8	5.6	6.5	chr21	9817901	9819192	(36890791)	C	SST1	Satellite/centr	(1)	1562	284	2374896
20	28.0	1.7	0.0	chr21	9819212	9819271	(36890712)	+	GA-rich	Low_complexity	1	61	(0)	2374897
21	16.7	0.0	2.4	chr21	9819273	9819314	(36890669)	+	(AC)n	Simple_repeat	1	42	(0)	2374898
1996	29.3	5.0	5.8	chr21	9819321	9820600	(36889383)	C	SST1	Satellite/centr	(11)	1552	284	2374899
1750	28.6	6.0	7.2	chr21	9822132	9823427	(36886556)	C	SST1	Satellite/centr	(1)	1562	284	2374905
3733	5.1	0.8	0.0	chr21	10269869	10270342	(36439641)	+	HSATI	Satellite	90	567	(10)	2375347
1732	14.4	0.0	5.1	chr21	10270343	10270634	(36439349)	+	AluSc8	SINE/Alu	13	289	(22)	2375348
753	29.7	7.6	4.8	chr21	32237803	32238159	(14471824)	C	MLT1L	LTR/ERVL-MaLR	(5)	605	238	2402877
513	19.6	0.0	1.9	chr21	32238249	32238352	(14471631)	C	MLT1I	LTR/ERVL-MaLR	(3)	408	307	2402878
12	23.7	2.5	0.0	chr21	32772205	32772244	(13937739)	+	GA-rich	Low_complexity	1	41	(0)	2403729
258	31.4	5.5	6.0	chr21	33480461	33480626	(13229357)	C	MIR3	SINE/MIR	(30)	178	14	2405073
13	9.8	0.0	0.0	chr21	37060460	37060481	(9649502)	+	(GCA)n	Simple_repeat	1	22	(0)	2410949
599	30.7	4.5	1.8	chr21	45120916	45121197	(1588786)	C	L1MEd	LINE/L1	(2291)	3855	3566	2422551
304	29.7	12.3	3.5	chr21	45121279	45121477	(1588506)	C	L1MEd	LINE/L1	(4610)	1632	1414	2422551
458	29.2	2.5	3.7	chr21	45121581	45121822	(1588161)	C	L1MEd	LINE/L1	(5995)	1108	870	2422551
931	20.4	12.1	0.5	chr21	45624441	45624685	(1085298)	+	MLT1A1	LTR/ERVL-MaLR	126	503	(2)	2423017
313	30.9	12.6	2.0	chr21	45624751	45624948	(1085035)	C	L1MDa	LINE/L1	(5158)	1475	1254	2423014
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
194	23.1	0.0	1.9	chr22	11817844	11817896	(39000572)	C	MER5A	DNA/hAT-Charlie	(20)	169	118	2425392
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
1790	17.6	2.3	1.9	chr22	12638390	12638696	(38179772)	C	AluJr	SINE/Alu	(4)	308	1	2426073
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
4341	4.4	0.2	0.0	chr22	18890645	18891207	(31927261)	C	HSATI	Satellite	(10)	567	4	2431162
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
14	19.9	0.0	7.5	chr22	18906193	18906245	(31912223)	+	G-rich	Low_complexity	1	53	(0)	2431193
19	21.5	0.0	8.0	chr22	19478991	19479065	(31339403)	+	(CCGCC)n	Simple_repeat	1	75	(0)	2432066
18	10.7	4.5	4.3	chr22	19479140	19479183	(31339285)	+	(CCG)n	Simple_repeat	1	46	(0)	2432067
311	26.7	22.5	2.9	chr22	19847052	19847325	(30971143)	+	MLT1I	LTR/ERVL-MaLR	77	408	(3)	2432606
188	20.0	2.4	0.0	chr22	20507237	20507276	(30311192)	+	L2b	LINE/L2	3330	3370	(5)	2433456
218	26.2	4.7	0.0	chr22	24876808	24876868	(25941600)	+	MIRb	SINE/MIR	28	91	(177)	2440871
975	24.6	11.2	4.2	chr22	24876880	24877235	(25941233)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	28	2440872
532	23.4	0.0	3.1	chr22	25137834	25137961	(25680507)	C	MIRb	SINE/MIR	(119)	149	26	2441573
1134	26.1	1.8	4.1	chr22	25138051	25138390	(25680078)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	80	2441574
858	26.4	3.5	3.9	chr22	25213379	25213700	(25604768)	C	MLT1I	LTR/ERVL-MaLR	(0)	549	79	2441743
778	27.4	11.4	3.0	chr22	26795373	26795734	(24022734)	+	MLT1I	LTR/ERVL-MaLR	16	411	(0)	2445186
537	31.0	7.0	2.1	chr22	26795776	26795966	(24022502)	C	MIRb	SINE/MIR	(30)	238	38	2445187
341	32.4	4.6	6.2	chr22	27283174	27283463	(23535005)	+	MLT1I	LTR/ERVL-MaLR	127	411	(0)	2446372
327	22.6	1.3	3.8	chr22	27825329	27825432	(22993036)	+	L2c	LINE/L2	2976	3079	(340)	2447596
2483	17.5	2.8	3.2	chr22	27825433	27825939	(22992529)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	1	2447597
949	18.8	0.0	0.7	chr22	28592205	28592358	(22226110)	+	AluJr	SINE/Alu	137	289	(23)	2448755
13	15.9	0.0	0.0	chr22	36481469	36481496	(14336972)	+	(CCGC)n	Simple_repeat	1	28	(0)	2465156
293	23.8	0.0	3.5	chr22	37253400	37253486	(13564982)	+	MLT1J	LTR/ERVL-MaLR	359	442	(6)	2466821
2044	27.5	9.4	6.7	chr22	37253493	37253657	(13564811)	C	L1M5	LINE/L1	(2351)	3795	3594	2466812
2402	6.3	0.3	2.3	chr22	37253658	37253960	(13564508)	C	AluY	SINE/Alu	(14)	297	1	2466822
4957	16.2	3.5	4.6	chr22	37258622	37259476	(13558992)	+	MER49	LTR/ERV1	78	923	(0)	2466829
309	37.0	4.0	4.4	chr22	37259477	37259499	(13558969)	C	L1MC	LINE/L1	(1215)	4931	4909	2466828
21	22.5	4.5	0.0	chr22	37519123	37519189	(13299279)	+	(CGCCTC)n	Simple_repeat	1	70	(0)	2467416
17	12.2	4.0	5.8	chr22	38398524	38398573	(12419895)	+	GA-rich	Low_complexity	1	52	(0)	2469395
1215	12.2	1.1	3.1	chr22	40805523	40805716	(10012752)	C	MER30B	DNA/hAT-Charlie	(0)	190	1	2474391
1469	14.1	1.9	7.6	chr22	40805717	40805890	(10012578)	+	MLT1D	LTR/ERVL-MaLR	348	505	(0)	2474390
2132	14.0	1.3	0.0	chr22	41965879	41966178	(8852290)	+	AluSq2	SINE/Alu	1	304	(9)	2477163
2202	12.2	0.0	2.2	chr22	41966179	41966353	(8852115)	+	AluJb	SINE/Alu	137	305	(7)	2477162
1118	24.5	6.9	6.7	chr22	41966354	41966431	(8852037)	+	MLT1I	LTR/ERVL-MaLR	339	411	(0)	2477161
281	25.2	20.2	1.0	chr22	41966432	41966531	(8851937)	C	MIRb	SINE/MIR	(114)	154	31	2477164
237	27.5	0.0	4.2	chr22	41966757	41966828	(8851640)	C	L2c	LINE/L2	(51)	3336	3268	2477165
801	21.9	6.9	1.8	chr22	43006098	43006316	(7812152)	+	MLT1A0	LTR/ERVL-MaLR	135	365	(0)	2479351
241	36.6	1.0	1.9	chr22	43006321	43006423	(7812045)	C	MIRb	SINE/MIR	(141)	127	26	2479353
2263	12.5	0.0	0.0	chr22	43006534	43006837	(7811631)	+	AluSq2	SINE/Alu	2	305	(8)	2479354
1684	15.0	3.1	0.0	chr22	43134351	43134596	(7683872)	C	AluSz	SINE/Alu	(15)	297	44	2479669
241	20.8	3.6	0.0	chr22	43134705	43134757	(7683711)	+	MLT1I	LTR/ERVL-MaLR	351	405	(6)	2479670
636	22.6	21.0	0.4	chr22	44705078	44705308	(6113160)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	177	2482473
2351	10.6	0.9	0.3	chr22	44705314	44705624	(6112844)	C	AluSq2	SINE/Alu	(0)	313	1	2482474
453	26.3	15.7	0.6	chr22	45760617	45760773	(5057695)	C	MIRb	SINE/MIR	(3)	265	81	2484519
468	18.3	3.1	2.1	chr22	45760774	45760868	(5057600)	+	MLT1I	LTR/ERVL-MaLR	314	409	(2)	2484520
947	27.7	4.4	4.6	chr22	46275616	46276027	(4542441)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	2485291
201	34.7	6.9	4.0	chr22	47266374	47266499	(3551969)	+	MIR3	SINE/MIR	5	134	(74)	2486630
298	16.7	0.0	1.8	chr22	47266500	47266554	(3551914)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	356	2486631
512	24.9	6.1	1.0	chr22	47266603	47266780	(3551688)	C	MLT1I	LTR/ERVL-MaLR	(151)	260	98	2486631
1037	31.6	13.3	1.8	chr22	47321772	47322381	(3496087)	+	L2a	LINE/L2	2466	3181	(245)	2486704
810	24.4	15.9	0.0	chr22	47322388	47322807	(3495661)	C	MLT1F1	LTR/ERVL-MaLR	(0)	569	41	2486706
1820	15.7	0.3	2.6	chr22	50142547	50142852	(675616)	+	AluJb	SINE/Alu	1	299	(13)	2490257
766	17.0	0.0	0.0	chr3	9362502	9362607	(188932952)	+	AluJo	SINE/Alu	5	110	(202)	2507067
320	30.4	3.4	10.5	chr3	9362688	9362878	(188932681)	+	MIRb	SINE/MIR	83	259	(9)	2507068
396	27.7	16.9	1.0	chr3	10843343	10843546	(187452013)	+	L2c	LINE/L2	2922	3164	(223)	2510224
513	30.6	10.4	3.2	chr3	10843547	10843857	(187451702)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	76	2510225
29	16.4	1.6	1.6	chr3	15332284	15332346	(182963213)	+	(TCC)n	Simple_repeat	1	64	(0)	2518597
13	11.9	0.0	6.2	chr3	15332634	15332665	(182962894)	+	(CCCGC)n	Simple_repeat	1	32	(0)	2518598
608	30.5	6.2	3.7	chr3	16076713	16077036	(182218523)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	101	2519891
589	25.5	18.9	2.8	chr3	16820311	16820593	(181474966)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	81	2521063
280	35.6	6.5	3.6	chr3	16820684	16820878	(181474681)	C	L2c	LINE/L2	(4)	3383	3183	2521064
278	28.6	2.8	4.5	chr3	23656102	23656211	(174639348)	+	MLT1J2	LTR/ERVL-MaLR	1	108	(340)	2530474
317	14.0	1.7	1.7	chr3	23656381	23656438	(174639121)	+	MLT1I	LTR/ERVL-MaLR	354	411	(0)	2530475
13	14.9	2.3	6.8	chr3	30606765	30606807	(167688752)	+	(GCGCG)n	Simple_repeat	1	44	(0)	2540793
24	19.1	3.2	1.5	chr3	33114003	33114065	(165181494)	+	(CCTT)n	Simple_repeat	1	65	(0)	2545324
26	14.1	2.9	4.3	chr3	33114562	33114629	(165180930)	+	(GCCCCG)n	Simple_repeat	1	70	(0)	2545325
645	30.3	8.9	4.3	chr3	42668824	42669199	(155626360)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	17	2559455
263	29.0	16.9	0.0	chr3	44729869	44730030	(153565529)	+	MIRc	SINE/MIR	24	218	(50)	2562571
13	19.2	0.0	0.0	chr3	48898796	48898825	(149396734)	+	(GTCA)n	Simple_repeat	1	30	(0)	2570220
1151	28.3	9.3	3.5	chr3	48899105	48899581	(149395978)	C	L2a	LINE/L2	(0)	3426	2904	2570221
1775	13.0	2.3	7.3	chr3	48915243	48915408	(149380151)	+	AluSz6	SINE/Alu	136	299	(13)	2570277
1771	26.0	6.7	4.9	chr3	48915409	48915669	(149379890)	+	MLT1G3	LTR/ERVL-MaLR	251	523	(72)	2570276
2230	10.2	0.7	0.7	chr3	48915699	48916002	(149379557)	C	AluSx	SINE/Alu	(8)	304	1	2570280
31	0.0	0.0	0.0	chr3	53350314	53350342	(144945217)	+	(T)n	Simple_repeat	1	29	(0)	2577493
773	13.1	0.0	4.1	chr3	53350343	53350423	(144945136)	C	AluJr	SINE/Alu	(195)	117	37	2577494
3060	16.5	3.5	1.7	chr3	53350424	53350959	(144944600)	C	LTR75_1	LTR/ERV1	(0)	546	1	2577495
1451	18.7	2.4	0.0	chr3	64037328	64037616	(134257943)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	95	2595058
310	19.1	4.5	0.0	chr3	66078061	66078144	(132217415)	C	MIR	SINE/MIR	(2)	260	173	2598619
350	22.9	5.7	0.0	chr3	66078148	66078230	(132217329)	C	MLT1I	LTR/ERVL-MaLR	(4)	407	320	2598620
748	21.8	3.1	0.0	chr3	66078279	66078434	(132217125)	C	MLT1I	LTR/ERVL-MaLR	(246)	165	5	2598620
320	21.9	0.0	9.6	chr3	75668819	75668954	(122626605)	C	LSAU	Satellite	(374)	124	2	2614560
969	28.5	8.8	4.0	chr3	132965119	132965733	(65329826)	C	LTR84b	LTR/ERVL	(83)	674	9	2689220
18	17.6	6.7	0.0	chr3	138834892	138834936	(59460623)	+	(GC)n	Simple_repeat	1	48	(0)	2698265
19	4.0	0.0	0.0	chr3	138835008	138835033	(59460526)	+	(GCG)n	Simple_repeat	1	26	(0)	2698266
1341	19.4	1.6	1.9	chr3	140924056	140924312	(57371247)	+	MLT1B	LTR/ERVL-MaLR	134	389	(1)	2701519
446	30.0	16.8	0.7	chr3	140924315	140924599	(57370960)	+	L2a	LINE/L2	3080	3419	(7)	2701520
485	23.6	14.3	4.4	chr3	141110410	141110486	(57185073)	C	MIRb	SINE/MIR	(36)	232	130	2701801
1336	25.1	7.0	1.0	chr3	141110487	141110872	(57184687)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	2701802
2295	13.4	0.0	0.0	chr3	142554954	142555266	(55740293)	+	AluSq2	SINE/Alu	1	313	(0)	2704297
14	26.8	3.2	6.1	chr3	143971700	143971794	(54323765)	+	(CCGCTC)n	Simple_repeat	1	98	(0)	2706423
15	16.6	0.0	0.0	chr3	143971976	143972002	(54323557)	+	(GC)n	Simple_repeat	1	27	(0)	2706424
36	16.3	3.1	4.0	chr3	149970880	149970975	(48324584)	+	(GCG)n	Simple_repeat	1	99	(0)	2714495
13	9.6	0.0	0.0	chr3	149971187	149971209	(48324350)	+	(GCGT)n	Simple_repeat	1	23	(0)	2714496
29	15.7	0.0	0.0	chr3	152315846	152315866	(45979693)	+	(AC)n	Simple_repeat	1	21	(0)	2718019
1403	20.6	4.3	3.5	chr3	156802802	156803169	(41492390)	C	MLT1A	LTR/ERVL-MaLR	(0)	374	4	2724582
335	23.2	0.0	0.0	chr3	156803404	156803472	(41492087)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	341	2724583
1368	20.3	7.7	7.2	chr3	168426609	168426996	(29868563)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	2740045
18	16.0	0.0	0.0	chr3	170908597	170908631	(27386928)	+	(GCG)n	Simple_repeat	1	35	(0)	2743786
274	27.9	1.2	8.1	chr3	172142640	172142725	(26152834)	+	L2c	LINE/L2	3283	3362	(25)	2745669
1640	18.6	0.8	4.6	chr3	172142754	172143125	(26152434)	C	MLT1A0	LTR/ERVL-MaLR	(0)	365	8	2745670
23	26.2	0.0	0.0	chr3	184710916	184710976	(13584583)	+	(GGCCCT)n	Simple_repeat	1	61	(0)	2765170
15	13.9	0.0	0.0	chr3	191329933	191329956	(6965603)	+	(G)n	Simple_repeat	1	24	(0)	2776383
38	0.0	0.0	0.0	chr3	191330297	191330329	(6965230)	+	(AC)n	Simple_repeat	1	33	(0)	2776384
294	27.4	5.9	4.6	chr3	193900929	193901097	(4394462)	C	L2b	LINE/L2	(231)	3156	2973	2780198
561	22.4	6.8	6.0	chr3	193901190	193901383	(4394176)	C	MLT1J2	LTR/ERVL-MaLR	(5)	443	232	2780199
245	35.2	1.1	0.0	chr3	193901388	193901475	(4394084)	+	MIRc	SINE/MIR	111	199	(69)	2780200
254	26.0	0.0	0.0	chr4	3796922	3796994	(186417561)	+	MLT1I	LTR/ERVL-MaLR	82	154	(257)	2793622
414	22.9	1.9	0.0	chr4	3797084	3797188	(186417367)	+	MLT1I	LTR/ERVL-MaLR	305	411	(0)	2793622
532	28.1	1.4	0.0	chr4	3797202	3797347	(186417208)	+	MIR	SINE/MIR	99	246	(16)	2793623
5893	15.3	1.1	1.9	chr4	4835914	4836196	(185378359)	+	L1MC1	LINE/L1	6050	6330	(3)	2795560
1032	23.8	13.1	5.8	chr4	4836207	4836437	(185378118)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	180	2795563
469	27.6	10.0	2.3	chr4	6201240	6201551	(184013004)	C	L2a	LINE/L2	(6)	3420	3014	2797931
733	26.1	11.2	1.6	chr4	6201611	6201925	(184012630)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	63	2797932
14	4.5	0.0	4.0	chr4	6987238	6987262	(183227293)	+	(CCGC)n	Simple_repeat	1	25	(0)	2799430
998	21.4	13.6	4.3	chr4	7844128	7844479	(182370076)	+	MLT1B	LTR/ERVL-MaLR	1	390	(0)	2800761
515	29.9	7.4	9.2	chr4	7844480	7844672	(182369883)	+	L2b	LINE/L2	3171	3370	(5)	2800760
6953	13.8	9.0	4.7	chr4	24598475	24599671	(165614884)	C	LTR12D	LTR/ERV1	(0)	1254	1	2827378
1218	12.9	0.0	1.8	chr4	24599672	24599841	(165614714)	+	AluSp	SINE/Alu	147	313	(0)	2827379
195	33.3	0.0	0.0	chr4	25501247	25501303	(164713252)	C	L3b	LINE/CR1	(1)	5231	5175	2829042
674	15.8	0.0	1.7	chr4	41321421	41321536	(148893019)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	298	2853847
4990	9.7	1.0	0.0	chr4	41321532	41322203	(148892352)	C	MSTA-int	LTR/ERVL-MaLR	(952)	679	1	2853848
1015	2.4	1.6	0.0	chr4	48269192	48269315	(141945240)	C	L1PA5	LINE/L1	(3)	6151	6026	2863588
13	23.3	0.0	2.4	chr4	48269813	48269854	(141944701)	+	(GAGCCCA)n	Simple_repeat	1	42	(0)	2863589
22	31.4	3.0	2.9	chr4	48269850	48269981	(141944574)	+	(CGCCC)n	Simple_repeat	1	136	(0)	2863590
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
20	20.6	2.0	0.0	chr4	56049161	56049210	(134165345)	+	(TGC)n	Simple_repeat	1	51	(0)	2871924
14	24.6	3.3	3.2	chr4	56049218	56049278	(134165277)	+	(GCCG)n	Simple_repeat	1	63	(0)	2871925
236	14.7	6.2	17.6	chr4	83284965	83285055	(106929500)	C	LTR54	LTR/ERV1	(0)	510	431	2909222
2231	14.2	1.7	1.7	chr4	83378461	83378549	(106836006)	+	MER72	LTR/ERV1	365	454	(268)	2909409
1963	17.4	19.7	4.8	chr4	83378550	83379067	(106835488)	+	LTR18B	LTR/ERVL	1	614	(0)	2909415
11313	17.3	1.9	0.7	chr4	84296414	84298781	(105915774)	+	L1MA4A	LINE/L1	3392	5787	(1775)	2910924
27549	2.3	0.0	0.1	chr4	84298781	84304810	(105909745)	+	L1PA2	LINE/L1	127	6152	(3)	2910925
1136	33.2	5.3	2.3	chr4	95693671	95693819	(94520736)	+	LTR16B	LTR/ERVL	3	151	(312)	2926726
1421	20.8	5.8	1.4	chr4	95693820	95694166	(94520389)	C	MLT1A0	LTR/ERVL-MaLR	(0)	365	3	2926727
733	33.1	10.7	7.9	chr4	99089902	99090445	(91124110)	+	L2	LINE/L2	2276	2857	(562)	2931244
14	20.5	0.0	0.0	chr4	106315997	106316030	(83898525)	+	(CGCTGC)n	Simple_repeat	1	34	(0)	2940649
13	21.9	3.5	5.0	chr4	128393637	128393694	(61820861)	+	GA-rich	Low_complexity	1	60	(0)	2970684
289	34.3	5.5	0.0	chr4	140932693	140932829	(49281726)	+	MLT1I	LTR/ERVL-MaLR	14	158	(253)	2987020
549	23.5	10.8	1.8	chr4	140932862	140933030	(49281525)	+	MLT1I	LTR/ERVL-MaLR	224	409	(2)	2987020
745	17.9	5.0	0.0	chr4	165206579	165206729	(25007826)	C	MER5A	DNA/hAT-Charlie	(28)	161	3	3020740
390	26.8	22.6	1.7	chr4	165206730	165207078	(25007477)	+	L2a	LINE/L2	2981	3423	(3)	3020736
16	16.3	4.9	0.0	chr4	165207420	165207460	(25007095)	+	(GCCC)n	Simple_repeat	1	43	(0)	3020741
15	13.6	0.0	2.9	chr4	184649179	184649212	(5565343)	+	(CCCCGG)n	Simple_repeat	1	34	(0)	3046946
398	23.5	0.7	2.2	chr4	190022652	190022790	(191765)	+	LSAU	Satellite	2	138	(360)	3054526
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
12	23.2	4.2	2.0	chr5	1188042	1188089	(180350170)	+	(CAGCTG)n	Simple_repeat	1	50	(0)	3056030
16	23.4	5.5	0.0	chr5	32173873	32173927	(149364332)	+	(GTC)n	Simple_repeat	1	58	(0)	3096322
14	12.1	0.0	3.5	chr5	32173926	32173954	(149364305)	+	(CGC)n	Simple_repeat	1	29	(0)	3096323
1287	4.6	0.0	0.0	chr5	74894310	74894462	(106643797)	C	L1PA3	LINE/L1	(3)	6152	6000	3152695
791	29.2	10.9	2.9	chr5	74894507	74894883	(106643376)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	1	3152696
681	28.3	9.2	8.5	chr5	74975430	74975819	(106562440)	+	MLT1I	LTR/ERVL-MaLR	19	411	(0)	3152861
1125	27.1	8.8	0.6	chr5	80127217	80127539	(101410720)	+	MLT1I	LTR/ERVL-MaLR	59	410	(1)	3160910
16	20.6	3.6	7.0	chr5	80127617	80127699	(101410560)	+	(TAATTTA)n	Simple_repeat	1	86	(0)	3160911
590	35.8	15.1	3.8	chr5	109574657	109575670	(71962589)	+	L2	LINE/L2	187	1332	(2087)	3199177
471	26.3	18.1	13.2	chr5	109575671	109576056	(71962203)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	1	3199178
20	19.2	3.8	0.0	chr5	115544855	115544935	(65993324)	+	G-rich	Low_complexity	1	84	(0)	3206941
268	15.2	9.2	1.7	chr5	118452044	118452103	(63086156)	+	MLT1I	LTR/ERVL-MaLR	347	411	(0)	3210854
1382	22.9	6.1	1.8	chr5	135999535	135999707	(45538552)	+	MLT1I	LTR/ERVL-MaLR	3	177	(234)	3235076
44	2.4	0.0	0.0	chr5	135999708	135999749	(45538510)	+	(GT)n	Simple_repeat	1	42	(0)	3235077
1382	22.9	6.1	1.8	chr5	135999750	135999966	(45538293)	+	MLT1I	LTR/ERVL-MaLR	178	410	(1)	3235076
2311	11.8	0.0	0.9	chr5	146380461	146380775	(35157484)	+	AluSx	SINE/Alu	1	312	(0)	3252470
415	25.9	2.7	0.0	chr5	146380789	146380896	(35157363)	C	LTR89	LTR/ERVL?	(732)	147	37	3252471
1352	18.7	16.5	8.0	chr5	146380898	146381321	(35156938)	C	MLT1C	LTR/ERVL-MaLR	(0)	467	1	3252472
498	27.6	0.8	0.0	chr5	149388608	149388734	(32149525)	C	MLT1I	LTR/ERVL-MaLR	(1)	410	283	3257625
460	28.3	9.4	4.2	chr5	149388853	149389044	(32149215)	+	MIRb	SINE/MIR	58	260	(8)	3257626
1321	29.2	4.0	0.3	chr5	149609817	149610204	(31928055)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	9	3258120
12	22.6	0.0	2.6	chr5	149730149	149730186	(31808073)	+	(CCCCCG)n	Simple_repeat	1	38	(0)	3258409
22	20.1	4.2	2.7	chr5	149730222	149730293	(31807966)	+	(CCTC)n	Simple_repeat	1	75	(0)	3258410
1336	25.5	10.0	4.9	chr5	154673870	154674256	(26864003)	+	MLT1I	LTR/ERVL-MaLR	3	411	(0)	3267749
210	21.0	13.7	1.7	chr5	154674519	154674590	(26863669)	+	MIRb	SINE/MIR	161	245	(23)	3267750
283	22.9	0.0	0.0	chr5	159112618	159112687	(22425572)	+	MLT1I	LTR/ERVL-MaLR	342	411	(0)	3275569
930	26.1	4.6	3.9	chr5	159112747	159113160	(22425099)	C	Charlie29a	DNA/hAT-Charlie	(7)	712	296	3275570
11	9.9	5.6	5.3	chr5	163437836	163437871	(18100388)	+	(GGTGCG)n	Simple_repeat	1	38	(0)	3282556
19	4.0	0.0	0.0	chr5	168579575	168579600	(12958659)	+	(GCC)n	Simple_repeat	1	26	(0)	3290342
2665	2.7	0.0	0.0	chr5	172958945	172959238	(8579021)	+	AluY	SINE/Alu	5	298	(13)	3298606
704	25.3	11.3	14.1	chr5	173302488	173302768	(8235491)	+	MLT1K	LTR/ERVL-MaLR	20	288	(307)	3299383
40	6.7	0.0	0.0	chr5	173302769	173302816	(8235443)	+	(GT)n	Simple_repeat	1	48	(0)	3299384
704	25.3	11.3	14.1	chr5	173302817	173303008	(8235251)	+	MLT1K	LTR/ERVL-MaLR	289	478	(117)	3299383
13	24.8	4.2	0.0	chr5	173303047	173303094	(8235165)	+	(TTCC)n	Simple_repeat	1	50	(0)	3299385
498	19.4	4.4	1.0	chr5	177355188	177355333	(4182926)	+	MIRb	SINE/MIR	60	215	(15)	3307249
241	23.9	0.0	0.0	chr5	177355575	177355620	(4182639)	C	MLT1J2	LTR/ERVL-MaLR	(0)	444	399	3307250
872	29.3	6.0	1.1	chr5	177355707	177356068	(4182191)	C	MLT1J2	LTR/ERVL-MaLR	(66)	382	2	3307250
338	28.9	7.5	3.2	chr5	177557834	177557987	(3980272)	+	ERVL-E-int	LTR/ERVL	4151	4311	(1403)	3307614
816	30.5	11.0	0.6	chr5	177557990	177558306	(3979953)	C	MLT1J2	LTR/ERVL-MaLR	(0)	448	95	3307618
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
2655	5.2	0.3	0.0	chr5	181063224	181063529	(474730)	+	AluY	SINE/Alu	1	307	(4)	3313593
620	19.6	10.7	4.8	chr5	181063530	181063656	(474603)	C	MER63A	DNA/hAT-Blackjack	(39)	171	34	3313592
1049	23.3	9.6	10.2	chr5	181063788	181064006	(474253)	C	MLT1A1	LTR/ERVL-MaLR	(0)	408	176	3313594
697	18.5	0.7	0.7	chr6	3209274	3209409	(167596570)	+	MER5A1	DNA/hAT-Charlie	27	162	(4)	3318577
690	28.2	11.5	3.0	chr6	12014764	12015096	(158790883)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	47	3332083
36	0.0	0.0	0.0	chr6	13733544	13733574	(157072405)	+	(AC)n	Simple_repeat	1	31	(0)	3334781
1069	28.4	4.7	1.5	chr6	14226219	14226551	(156579428)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	66	3335658
1378	22.1	6.1	4.7	chr6	24953576	24954013	(145851966)	+	MER39	LTR/ERV1	67	707	(0)	3352821
587	15.0	4.8	0.0	chr6	24954027	24954126	(145851853)	+	MLT1B	LTR/ERVL-MaLR	286	390	(0)	3352822
2272	6.9	0.4	0.0	chr6	26320047	26320360	(144485619)	+	AluSp	SINE/Alu	37	313	(0)	3355019
1520	17.2	4.0	3.4	chr6	26320391	26320715	(144485264)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	64	3355020
1523	27.9	6.9	2.7	chr6	30837312	30837987	(139967992)	C	L1MC4a	LINE/L1	(1779)	6103	5459	3362347
476	26.4	1.5	0.0	chr6	34100903	34101031	(136704948)	+	MLT1I	LTR/ERVL-MaLR	281	411	(0)	3367631
2081	14.1	0.0	1.0	chr6	36159942	36160240	(134645739)	C	AluJb	SINE/Alu	(16)	296	1	3371913
1963	18.2	3.5	2.1	chr6	36160332	36160753	(134645226)	C	MLT1C	LTR/ERVL-MaLR	(1)	466	39	3371914
1281	25.8	9.1	0.8	chr6	37560552	37560923	(133245056)	+	MLT1I	LTR/ERVL-MaLR	6	411	(0)	3374899
16	12.4	6.9	7.8	chr6	39792379	39792450	(131013529)	+	(AGCGCG)n	Simple_repeat	1	77	(0)	3378541
685	27.8	8.2	7.0	chr6	40642677	40643075	(130162904)	+	MLT1I	LTR/ERVL-MaLR	8	411	(0)	3379833
213	30.9	2.4	1.2	chr6	43918115	43918196	(126887783)	+	MIR	SINE/MIR	178	260	(2)	3386248
651	31.7	3.2	5.7	chr6	43918304	43918654	(126887325)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	70	3386249
1571	24.8	14.4	0.2	chr6	70422779	70423354	(100382625)	C	L2a	LINE/L2	(0)	3426	2758	3419187
354	27.3	11.8	5.5	chr6	70423444	70423760	(100382219)	C	MLT1J	LTR/ERVL-MaLR	(145)	367	2	3419188
699	31.3	4.7	6.4	chr6	87473519	87473969	(83332010)	+	MamTip3	DNA/hAT-Tip100	58	500	(0)	3441608
13	20.8	0.0	0.0	chr6	100881277	100881309	(69924670)	+	(CAGA)n	Simple_repeat	1	33	(0)	3459593
15	9.3	7.8	5.5	chr6	100881405	100881455	(69924524)	+	(CCTCCG)n	Simple_repeat	1	55	(0)	3459594
2157	13.8	0.3	0.0	chr6	109011624	109011928	(61794051)	C	AluJr	SINE/Alu	(6)	306	1	3471498
719	19.1	9.4	2.7	chr6	110189238	110189425	(60616554)	+	L2a	LINE/L2	3221	3422	(4)	3473271
199	35.6	11.5	4.2	chr6	110189479	110190008	(60615971)	+	L2	LINE/L2	1505	2078	(1341)	3473272
240	13.1	8.0	2.1	chr6	111062171	111062217	(59743762)	C	MLT1A	LTR/ERVL-MaLR	(16)	358	309	3474956
2071	9.9	4.3	1.0	chr6	111062218	111062509	(59743470)	+	AluSq	SINE/Alu	1	302	(11)	3474957
597	32.7	8.3	1.4	chr6	112198845	112199042	(58606937)	C	MIR	SINE/MIR	(40)	222	8	3476760
229	36.6	4.7	4.0	chr6	112199319	112199466	(58606513)	C	LFSINE_Vert	SINE/tRNA	(302)	157	9	3476761
12	11.6	6.9	0.0	chr6	118198722	118198750	(52607229)	+	(TGTA)n	Simple_repeat	1	31	(0)	3484837
1720	25.9	2.8	1.9	chr6	118198892	118199312	(52606667)	C	MER70B	LTR/ERVL	(150)	428	4	3484838
12017	12.4	5.7	2.5	chr6	119236728	119237363	(51568616)	+	Tigger1	DNA/TcMar-Tigger	1446	2071	(347)	3486334
5423	22.1	4.3	7.0	chr6	123276211	123277380	(47528599)	+	MLT1C-int	LTR/ERVL-MaLR	239	1371	(0)	3491485
2249	15.4	1.8	3.3	chr6	135842533	135842928	(34963051)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	3509013
2230	12.5	0.0	0.7	chr6	143213489	143213816	(27592163)	C	AluSx1	SINE/Alu	(0)	312	1	3519542
14	5.0	0.0	0.0	chr6	147204595	147204615	(23601364)	+	(GCA)n	Simple_repeat	1	21	(0)	3525092
14	12.5	0.0	0.0	chr6	147204785	147204810	(23601169)	+	(AAT)n	Simple_repeat	1	26	(0)	3525093
31	13.9	0.0	0.0	chr6	160218913	160218977	(10587002)	+	(CAG)n	Simple_repeat	1	65	(0)	3545197
388	35.6	4.6	3.7	chr6	168614431	168615747	(2190232)	+	TAR1	Satellite/telo	1	1328	(552)	3555632
12	15.8	0.0	3.3	chr6	169904736	169904765	(901214)	+	(CTC)n	Simple_repeat	1	30	(0)	3556962
1611	18.1	1.7	4.3	chr7	5294120	5294240	(154051733)	C	AluJr	SINE/Alu	(191)	121	1	3566713
466	32.2	3.9	3.6	chr7	5294365	5294693	(154051280)	C	MLT1I	LTR/ERVL-MaLR	(0)	411	82	3566715
1332	21.0	16.3	5.6	chr7	5432942	5433177	(153912796)	+	MLT1C	LTR/ERVL-MaLR	187	467	(0)	3567014
434	16.0	0.0	0.0	chr7	5433298	5433372	(153912601)	C	MLT1I	LTR/ERVL-MaLR	(1)	410	336	3567016
441	28.6	4.1	7.5	chr7	7292687	7292913	(152053060)	+	LTR105_Mam	LTR/ERVL	24	242	(358)	3570902
20	17.8	1.8	3.6	chr7	21427972	21428028	(137917945)	+	(CGCCC)n	Simple_repeat	1	56	(0)	3589265
16	22.8	6.6	0.0	chr7	21428284	21428344	(137917629)	+	(CTCC)n	Simple_repeat	1	65	(0)	3589266
47	0.0	0.0	0.0	chr7	25856999	25857038	(133488935)	+	(AC)n	Simple_repeat	1	40	(0)	3596026
14	9.1	0.0	0.0	chr7	25857039	25857062	(133488911)	+	(GCAC)n	Simple_repeat	1	24	(0)	3596027
12	32.3	2.4	3.6	chr7	30284934	30285015	(129060958)	+	(GGC)n	Simple_repeat	1	84	(0)	3602922
20	30.8	3.2	1.0	chr7	35801370	35801462	(123544511)	+	(GGC)n	Simple_repeat	1	96	(0)	3611239
337	33.3	4.2	0.0	chr7	39324240	39324440	(120021533)	+	MLT1I	LTR/ERVL-MaLR	1	210	(238)	3616365
398	13.6	0.0	0.0	chr7	39324544	39324602	(120021371)	+	MLT1I	LTR/ERVL-MaLR	353	411	(0)	3616365
27	13.8	5.1	4.8	chr7	42237522	42237600	(117108373)	+	(CTC)n	Simple_repeat	1	83	(0)	3620930
19	25.4	4.0	1.3	chr7	42237877	42237952	(117108021)	+	G-rich	Low_complexity	1	79	(0)	3620931
631	27.2	27.2	1.4	chr7	47777218	47777570	(111568403)	+	MLT1L	LTR/ERVL-MaLR	143	593	(17)	3629066
185	29.2	0.0	0.0	chr7	47777594	47777641	(111568332)	+	L3	LINE/CR1	3496	3543	(556)	3629067
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
1117	10.5	0.0	3.1	chr7	67375354	67375515	(91970458)	+	AluJr	SINE/Alu	68	224	(88)	3652075
647	13.6	0.0	1.0	chr7	67375532	67375635	(91970338)	+	MLT1D	LTR/ERVL-MaLR	402	504	(1)	3652073
185	34.9	4.6	0.0	chr7	67375658	67375740	(91970233)	+	L2b	LINE/L2	3068	3154	(221)	3652076
2065	14.8	0.0	0.3	chr7	67375869	67376172	(91969801)	C	AluSz6	SINE/Alu	(9)	303	1	3652077
328	27.7	16.5	0.0	chr7	75757370	75757506	(83588467)	+	MLT1I	LTR/ERVL-MaLR	245	408	(3)	3670452
2269	12.3	0.7	0.0	chr7	75757564	75757871	(83588102)	+	AluSx	SINE/Alu	1	310	(2)	3670453
574	28.4	9.7	7.3	chr7	88359047	88359388	(70986585)	C	MLT1I	LTR/ERVL-MaLR	(1)	410	60	3688451
131	4.2	3.4	1.1	chr7	98439358	98439532	(60906441)	+	(TTCT)n	Simple_repeat	1	181	(0)	3702604
83	18.4	3.6	3.1	chr7	98439533	98439661	(60906312)	+	(CCTT)n	Simple_repeat	3	134	(0)	3702605
422	8.2	0.0	1.6	chr7	98439664	98439725	(60906248)	+	MLT1I	LTR/ERVL-MaLR	351	411	(0)	3702602
471	28.2	7.2	0.0	chr7	98469304	98469484	(60876489)	C	MLT1I	LTR/ERVL-MaLR	(13)	398	204	3702672
1718	17.2	0.0	1.1	chr7	98671441	98671713	(60674260)	C	AluJo	SINE/Alu	(26)	286	17	3703113
374	24.8	2.7	0.9	chr7	98671912	98672021	(60673952)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	298	3703114
625	27.1	3.4	3.4	chr7	98672182	98672357	(60673616)	C	MIR	SINE/MIR	(0)	262	87	3703115
400	10.8	0.2	2.5	chr7	98810993	98811637	(60534336)	+	(TGG)n	Simple_repeat	1	646	(0)	3703453
1194	27.1	2.9	1.3	chr7	100944052	100944361	(58401612)	+	MLT1I	LTR/ERVL-MaLR	97	411	(0)	3707698
2208	11.9	0.7	0.3	chr7	100944393	100944695	(58401278)	C	AluSq	SINE/Alu	(9)	304	1	3707699
2587	5.0	0.0	0.0	chr7	101283318	101283618	(58062355)	+	AluY	SINE/Alu	2	302	(9)	3708418
31	0.0	0.0	0.0	chr7	106101439	106101467	(53244506)	+	(C)n	Simple_repeat	1	29	(0)	3717099
312	27.9	9.8	7.3	chr7	106285214	106285391	(53060582)	C	L1M4b	LINE/L1	(6487)	380	198	3717380
2600	24.9	11.3	3.7	chr7	109387548	109388365	(49957608)	C	L1M3e	LINE/L1	(6140)	890	3	3721740
180	22.9	15.8	0.0	chr7	124702160	124702207	(34643766)	C	OldhAT1	DNA/hAT-Ac	(1807)	1041	985	3742196
23	17.8	1.0	2.0	chr7	124702329	124702380	(34643593)	+	GA-rich	Low_complexity	1	51	(0)	3742197
1764	19.7	5.0	3.2	chr7	129567207	129567583	(29778390)	+	MLT1D	LTR/ERVL-MaLR	122	505	(0)	3749427
2242	22.7	5.4	7.4	chr7	129567584	129567892	(29778081)	+	MLT1D-int	LTR/ERVL-MaLR	1	300	(1071)	3749427
15	17.8	2.6	0.0	chr7	139360345	139360382	(19985591)	+	G-rich	Low_complexity	1	39	(0)	3765423
2264	10.8	0.0	0.0	chr7	148930107	148930401	(10415572)	+	AluSq2	SINE/Alu	2	296	(17)	3779625
16	13.2	0.0	0.0	chr7	148930412	148930436	(10415537)	+	(A)n	Simple_repeat	1	25	(0)	3779626
263	31.2	4.1	2.1	chr7	148930528	148930671	(10415302)	C	L2b	LINE/L2	(177)	3198	3052	3779627
17312	13.3	2.4	0.4	chr7	149661625	149663693	(9682280)	C	L1PBa	LINE/L1	(4758)	2105	2	3781000
16	0.0	3.9	3.7	chr7	158151565	158151590	(1194383)	+	(GTG)n	Simple_repeat	1	27	(0)	3793030
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
21277	6.4	0.1	0.1	chr8	9441308	9447455	(135691181)	C	L1PA5	LINE/L1	(0)	6154	2	3806516
297	13.7	8.9	0.0	chr8	27946367	27946417	(117192219)	C	MER2B	DNA/TcMar-Tigger	(23)	313	258	3835265
793	16.5	2.8	1.4	chr8	27946476	27946616	(117192020)	+	MLT1B	LTR/ERVL-MaLR	248	390	(0)	3835266
190	22.9	7.7	0.0	chr8	27946796	27946843	(117191793)	C	MER5A	DNA/hAT-Charlie	(82)	107	56	3835267
687	30.3	3.7	1.9	chr8	30050218	30050483	(115088153)	C	L2a	LINE/L2	(0)	3426	3156	3838948
1273	25.8	9.7	0.3	chr8	30050486	30050850	(115087786)	+	MLT1I	LTR/ERVL-MaLR	9	411	(0)	3838949
310	30.0	0.0	0.0	chr8	30050874	30050953	(115087683)	C	L2a	LINE/L2	(706)	2713	2634	3838948
511	25.1	16.6	5.4	chr8	42895460	42896005	(102242631)	+	L1ME3A	LINE/L1	5564	6219	(23)	3859713
1574	27.8	4.4	3.6	chr8	57205915	57206586	(87932050)	C	MER50	LTR/ERV1	(29)	705	28	3874990
182	33.0	9.9	1.8	chr8	60136472	60136582	(85002054)	+	Tigger19a	DNA/TcMar-Tigger	36	156	(167)	3878721
184	34.9	4.2	5.0	chr8	60653539	60653921	(84484715)	+	L2	LINE/L2	2702	3081	(338)	3879550
1044	16.4	10.3	3.0	chr8	73287666	73288080	(71850556)	+	MLT1D	LTR/ERVL-MaLR	13	505	(0)	3897753
233	29.9	15.5	7.9	chr8	85106579	85106869	(60031767)	+	L2c	LINE/L2	3070	3386	(1)	3914050
18	16.0	0.0	0.0	chr8	85107298	85107332	(60031304)	+	(GGC)n	Simple_repeat	1	35	(0)	3914051
1574	22.1	4.3	3.0	chr8	100894993	100895361	(44243275)	+	MLT1A	LTR/ERVL-MaLR	1	374	(0)	3937742
426	35.6	4.4	4.4	chr8	100895362	100895454	(44243182)	+	MIRb	SINE/MIR	175	265	(3)	3937741
388	18.2	2.9	10.6	chr8	100895551	100895686	(44242950)	C	MER20B	DNA/hAT-Charlie	(28)	191	58	3937743
30	0.0	0.0	0.0	chr8	105318846	105318873	(39819763)	+	(GCG)n	Simple_repeat	1	28	(0)	3944980
16	29.0	0.0	0.0	chr8	105318884	105318937	(39819699)	+	(AGCCGC)n	Simple_repeat	1	54	(0)	3944981
1269	26.1	1.6	0.3	chr8	125458539	125458853	(19679783)	+	MLT1I	LTR/ERVL-MaLR	93	411	(0)	3975639
2111	10.2	0.3	9.9	chr8	125458977	125459320	(19679316)	C	AluSx1	SINE/Alu	(1)	311	1	3975640
339	19.3	0.0	0.0	chr8	133706543	133706599	(11432037)	+	MLT1I	LTR/ERVL-MaLR	355	411	(0)	3991035
2157	11.1	0.7	0.0	chr8	133706638	133706926	(11431710)	+	AluSx1	SINE/Alu	1	291	(21)	3991036
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
226	12.1	0.0	0.0	chr8	143669745	143669777	(1468859)	+	Alu	SINE/Alu	2	34	(99)	4006490
303	13.6	4.3	2.9	chr8	143669777	143669844	(1468792)	C	MSTA	LTR/ERVL-MaLR	(175)	253	185	4006491
1387	25.7	7.0	3.4	chr8	144125268	144125631	(1013005)	+	L1MC4	LINE/L1	7167	7535	(507)	4007142
24	31.9	0.0	1.2	chr9	3525641	3525723	(134868994)	+	(CA)n	Simple_repeat	1	83	(0)	4013733
31	12.9	3.4	0.0	chr9	3525764	3525843	(134868874)	+	GA-rich	Low_complexity	1	82	(0)	4013734
34	9.2	0.0	0.0	chr9	3525927	3526019	(134868698)	+	(AG)n	Simple_repeat	1	93	(0)	4013735
1247	34.6	12.3	2.6	chr9	32624996	32626732	(105767985)	+	L2b	LINE/L2	1385	3351	(24)	4053959
1857	19.1	13.9	2.7	chr9	32626733	32626782	(105767935)	C	MLT1D	LTR/ERVL-MaLR	(0)	505	457	4053960
2052	10.4	0.7	0.0	chr9	32626783	32627051	(105767666)	C	AluSx	SINE/Alu	(6)	306	36	4053961
268	24.7	13.1	5.8	chr9	33166120	33166274	(105228443)	C	MIRb	SINE/MIR	(8)	260	93	4054860
296	22.0	5.7	2.5	chr9	41229379	41230391	(97164326)	+	(TG)n	Simple_repeat	1	1071	(0)	4068370
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
13	18.9	2.8	0.0	chr9	62807627	62807662	(75587055)	+	(GGCCA)n	Simple_repeat	1	37	(0)	4073678
2605	29.9	5.1	4.7	chr9	65388281	65390272	(73004445)	+	SST1	Satellite/centr	1	2001	(859)	4076190
263	35.8	3.6	0.0	chr9	71668727	71668807	(66725910)	C	L2b	LINE/L2	(38)	3337	3254	4085012
743	28.9	7.9	7.2	chr9	71668909	71668966	(66725751)	C	MLT1I	LTR/ERVL-MaLR	(3)	408	362	4085013
1721	13.1	10.4	0.4	chr9	71668967	71669234	(66725483)	C	AluJr4	SINE/Alu	(10)	302	5	4085014
1325	24.5	9.9	2.9	chr9	85445763	85446136	(52948581)	+	MLT1I	LTR/ERVL-MaLR	3	405	(6)	4106208
838	28.6	12.3	3.8	chr9	98339867	98340237	(40054480)	+	MLT1I	LTR/ERVL-MaLR	5	411	(0)	4126337
930	15.9	0.0	0.0	chr9	98340427	98340558	(40054159)	C	FLAM_C	SINE/Alu	(10)	133	2	4126338
824	24.1	14.5	6.4	chr9	98700691	98701036	(39693681)	+	MLT1J2	LTR/ERVL-MaLR	68	446	(2)	4127032
329	25.8	3.6	11.1	chr9	121075562	121075700	(17319017)	+	MIRb	SINE/MIR	11	143	(125)	4166302
954	25.6	5.7	1.2	chr9	121075704	121075952	(17318765)	C	MIR	SINE/MIR	(0)	262	2	4166303
2331	10.5	0.7	0.0	chr9	126728045	126728349	(11666368)	C	AluSc	SINE/Alu	(2)	307	1	4176913
988	28.2	7.4	7.0	chr9	126728350	126728429	(11666288)	+	MLT1J2	LTR/ERVL-MaLR	369	448	(0)	4176912
1360	28.4	3.7	10.0	chr9	126728430	126728968	(11665749)	C	L1ME3C	LINE/L1	(1424)	4722	4215	4176907
395	30.8	5.2	7.1	chr9	127898571	127898766	(10495951)	C	MIRb	SINE/MIR	(36)	232	41	4179282
270	19.9	0.7	0.2	chr9	130958574	130959111	(7435606)	+	(CACCAC)n	Simple_repeat	1	542	(0)	4186091
33	16.2	14.3	1.1	chr9	131394000	131394160	(7000557)	+	(GCGA)n	Simple_repeat	1	184	(0)	4187013
16	18.4	3.3	9.7	chr9	131394159	131394248	(7000469)	+	(GCCCC)n	Simple_repeat	1	93	(0)	4187014
500	34.8	1.1	0.6	chr9	134894899	134895077	(3499640)	+	MLT1J2	LTR/ERVL-MaLR	1	180	(268)	4192513
229	16.7	0.0	11.5	chr9	134895170	134895230	(3499487)	+	MLT1J2	LTR/ERVL-MaLR	395	448	(0)	4192514
733	30.0	16.8	4.5	chr9	134895231	134895740	(3498977)	+	MLT1J2-int	LTR/ERVL-MaLR	1	585	(802)	4192514
300	13.2	3.6	0.0	chr9	136774484	136774536	(1620181)	+	MSTB	LTR/ERVL-MaLR	372	426	(0)	4194789
232	26.4	5.2	6.2	chr9	136774554	136774650	(1620067)	+	MLT1J2	LTR/ERVL-MaLR	353	448	(0)	4194790
1293	7.7	0.7	3.3	chr9	137328572	137330657	(1064060)	+	(TACACGGGAC)n	Simple_repeat	1	2100	(0)	4195496
2033	16.0	6.8	4.8	chrX	2902591	2903049	(153137846)	+	MLT1D	LTR/ERVL-MaLR	37	505	(0)	4363810
42	17.2	6.1	0.0	chrX	2903079	2903177	(153137718)	+	(CT)n	Simple_repeat	1	105	(0)	4363811
458	27.6	2.4	2.4	chrX	2903198	2903364	(153137531)	C	MLT1H	LTR/ERVL-MaLR	(289)	260	94	4363812
911	25.9	11.2	2.2	chrX	13281167	13281537	(142759358)	+	MLT1I	LTR/ERVL-MaLR	1	409	(2)	4380933
633	33.6	6.9	3.9	chrX	13281538	13281623	(142759272)	C	MIR	SINE/MIR	(168)	94	1	4380932
415	26.9	6.6	1.7	chrX	17983334	17983507	(138057388)	C	MER112	DNA/hAT-Charlie	(0)	261	79	4388702
12	22.5	2.7	0.0	chrX	17983518	17983554	(138057341)	+	(ATTCC)n	Simple_repeat	1	38	(0)	4388703
792	27.4	10.8	15.7	chrX	17983568	17984039	(138056856)	C	MLT1J2	LTR/ERVL-MaLR	(2)	446	1	4388704
342	33.3	6.6	0.0	chrX	30197982	30198122	(125842773)	+	LTR78B	LTR/ERV1	520	670	(626)	4407856
318	35.4	2.0	1.3	chrX	30198144	30198292	(125842603)	+	LTR78B	LTR/ERV1	731	880	(416)	4407856
2448	8.0	0.3	0.0	chrX	47320944	47321254	(108719641)	C	AluSp	SINE/Alu	(1)	312	1	4433847
14	21.3	1.9	5.5	chrX	71068074	71068127	(84972768)	+	(CCTC)n	Simple_repeat	1	55	(0)	4460742
12	25.6	2.4	0.0	chrX	71068325	71068366	(84972529)	+	G-rich	Low_complexity	1	43	(0)	4460743
3948	14.9	7.2	5.9	chrX	101312657	101312757	(54728138)	C	L1MD	LINE/L1	(1531)	4615	4506	4495807
309	29.5	0.0	0.0	chrX	101312758	101312835	(54728060)	C	L2	LINE/L2	(566)	2853	2776	4495814
1778	18.9	0.4	0.4	chrX	101312840	101313119	(54727776)	C	AluJr	SINE/Alu	(10)	302	23	4495815
13	19.7	10.3	0.0	chrX	107826688	107826745	(48214150)	+	G-rich	Low_complexity	1	64	(0)	4504923
265	28.4	7.8	4.0	chrX	107893874	107893972	(48146923)	C	L2c	LINE/L2	(1)	3386	3284	4505004
421	26.1	12.5	11.8	chrX	107894001	107894258	(48146637)	+	L2c	LINE/L2	3117	3361	(14)	4505005
14	27.1	0.0	0.0	chrX	139933089	139933132	(16107763)	+	(CCCCG)n	Simple_repeat	1	44	(0)	4551411
2797	11.9	3.0	0.9	chrX	141002791	141003240	(15037655)	C	LTR46	LTR/ERV1	(0)	460	1	4553136
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638
262	25.0	0.0	0.0	chrY	11000083	11000138	(46227277)	C	AluYj4	SINE/Alu	(32)	279	224	4588639