12	13.7	6.2	0.0	chr1	9719316	9719347	(239237075)	+	(GCTGG)n	Simple_repeat	1	34	(0)	14243
2305	9.8	0.0	0.3	chr1	9719379	9719674	(239236748)	+	AluSx3	SINE/Alu	1	295	(16)	14244
12	20.2	0.0	6.7	chr1	9823796	9823840	(239132582)	+	G-rich	Low_complexity	1	45	(0)	14454
15	0.0	0.0	0.0	chr1	9823863	9823881	(239132541)	+	(GCC)n	Simple_repeat	1	19	(0)	14455
68	23.8	1.8	6.6	chr1	11272907	11273190	(237683232)	+	(CCGCC)n	Simple_repeat	1	289	(0)	17351
670	25.5	5.9	1.9	chr1	12118675	12118854	(236837568)	+	LTR41B	LTR/ERVL	1	192	(566)	19205
2425	8.7	0.0	0.3	chr1	12118855	12119163	(236837259)	C	AluSg	SINE/Alu	(2)	308	1	19206
609	23.2	3.4	12.6	chr1	15113212	15113472	(233842950)	+	MER106B	DNA/hAT-Charlie	893	1059	(0)	24568
517	24.1	1.7	4.9	chr1	15964277	15964435	(232991987)	+	L1ME3F	LINE/L1	4500	4653	(1493)	26410
2139	13.6	0.3	0.0	chr1	15964436	15964736	(232991686)	+	AluJb	SINE/Alu	1	302	(10)	26412
2358	10.0	0.0	0.0	chr1	16620824	16621124	(232335298)	C	AluSc8	SINE/Alu	(10)	301	1	27833
293	37.7	1.4	0.0	chr1	16621175	16621312	(232335110)	C	MER91B	DNA/hAT-Tip100	(50)	140	1	27834
18	12.2	0.0	0.0	chr1	16634831	16634857	(232321565)	+	(A)n	Simple_repeat	1	27	(0)	27865
393	21.1	3.2	2.2	chr1	16634877	16634968	(232321454)	+	L1ME4b	LINE/L1	745	837	(55)	27862
2296	11.7	0.0	0.0	chr1	16635031	16635337	(232321085)	C	AluSx	SINE/Alu	(5)	307	1	27866
185	23.7	0.0	0.0	chr1	17521085	17521122	(231435300)	C	L3	LINE/CR1	(16)	4083	4046	29622
234	32.9	0.0	6.6	chr1	17521126	17521184	(231435238)	C	CR1-3_Croc	LINE/CR1	(610)	2995	2938	29623
27	0.0	0.0	0.0	chr1	17521185	17521210	(231435212)	+	(TGTTT)n	Simple_repeat	1	26	(0)	29624
592	22.6	11.4	0.5	chr1	21011787	21011982	(227944440)	+	Charlie1a	DNA/hAT-Charlie	332	551	(904)	36962
232	16.3	0.0	0.0	chr1	21012031	21012073	(227944349)	+	Charlie1b	DNA/hAT-Charlie	476	518	(5)	36963
265	19.1	2.1	0.0	chr1	22976384	22976430	(225979992)	+	L2c	LINE/L2	3301	3348	(39)	41383
281	31.9	9.5	6.4	chr1	23033685	23033949	(225922473)	C	L2	LINE/L2	(423)	2996	2723	41498
785	23.9	5.6	1.5	chr1	24330387	24330590	(224625832)	+	MIR	SINE/MIR	50	262	(0)	44676
209	22.7	0.0	2.2	chr1	24330669	24330713	(224625709)	+	L2c	LINE/L2	3120	3163	(224)	44677
15	19.1	0.0	6.4	chr1	26111803	26111849	(222844573)	+	(CGG)n	Simple_repeat	1	47	(0)	48599
12	21.2	5.9	1.9	chr1	26697554	26697604	(222258818)	+	G-rich	Low_complexity	1	54	(0)	50009
12	18.1	0.0	3.0	chr1	26697693	26697725	(222258697)	+	(CTTC)n	Simple_repeat	1	33	(0)	50010
17	27.0	2.9	1.4	chr1	35192969	35193037	(213763385)	+	(CCGCCA)n	Simple_repeat	1	70	(0)	68204
208	20.2	3.3	1.1	chr1	37177330	37177415	(211779007)	C	L2a	LINE/L2	(317)	3109	3021	72251
186	33.3	7.0	1.9	chr1	42684187	42684348	(206272074)	C	MamSINE1	SINE/tRNA-RTE	(7)	283	113	82977
503	29.4	9.3	0.8	chr1	42963300	42963546	(205992876)	+	L2b	LINE/L2	2363	2632	(787)	83439
1615	18.3	0.7	0.7	chr1	44188656	44188939	(204767483)	C	AluSz6	SINE/Alu	(0)	312	29	85627
594	18.7	5.0	12.8	chr1	44189101	44189296	(204767126)	C	L1MC5a	LINE/L1	(418)	2359	2180	85628
493	25.6	8.8	7.6	chr1	46115121	46115357	(202841065)	+	MLT1K	LTR/ERVL-MaLR	346	585	(10)	89365
2098	17.6	7.0	11.5	chr1	52937735	52938240	(196018182)	C	MER66D	LTR/ERV1	(0)	484	3	102131
380	27.9	11.4	2.2	chr1	59008457	59008639	(189947783)	C	MIR	SINE/MIR	(29)	233	32	113998
1674	25.6	10.1	2.2	chr1	63547558	63548048	(185408374)	C	MLT1H	LTR/ERVL-MaLR	(0)	549	16	122243
548	27.7	7.8	1.8	chr1	63548100	63548332	(185408090)	C	L2a	LINE/L2	(274)	3101	2859	122242
384	27.5	6.4	2.9	chr1	66541182	66541286	(182415136)	C	L2a	LINE/L2	(1)	3425	3317	127372
938	25.3	10.6	4.8	chr1	67352270	67352622	(181603800)	C	MLT1J	LTR/ERVL-MaLR	(67)	445	70	128682
554	27.8	5.1	0.5	chr1	70497311	70497498	(178458924)	C	MER63A	DNA/hAT-Blackjack	(0)	210	14	133531
600	28.3	7.8	6.3	chr1	81519840	81520207	(167436215)	+	MLT1L	LTR/ERVL-MaLR	121	456	(154)	148551
469	31.6	15.7	5.4	chr1	84667193	84668005	(164288417)	+	L2c	LINE/L2	2458	3383	(4)	152884
323	35.3	3.6	0.0	chr1	86778847	86778979	(162177443)	C	MIRb	SINE/MIR	(118)	150	13	156084
383	31.7	1.6	0.8	chr1	87918509	87918632	(161037790)	C	LFSINE_Vert	SINE/tRNA	(39)	420	296	157774
185	25.3	8.1	5.2	chr1	89719698	89719793	(159236629)	+	AmnSINE1	SINE/5S-Deu-L2	337	435	(140)	160233
3645	26.9	6.8	3.4	chr1	92652716	92655559	(156300863)	+	L1PB4	LINE/L1	284	2768	(4085)	164829
11199	13.7	8.0	5.2	chr1	93147638	93149869	(155806553)	+	Tigger7	DNA/TcMar-Tigger	102	2401	(90)	165793
305	28.0	3.3	2.5	chr1	93848110	93848230	(155108192)	C	MER5A	DNA/hAT-Charlie	(16)	173	52	166927
968	16.8	13.2	1.6	chr1	93874177	93874369	(155082053)	+	MER20	DNA/hAT-Charlie	1	219	(0)	166963
322	32.6	0.0	0.0	chr1	100351338	100351432	(148604990)	+	MamSINE1	SINE/tRNA-RTE	195	289	(1)	176446
14	5.0	0.0	0.0	chr1	114757666	114757686	(134198736)	+	(CAC)n	Simple_repeat	1	21	(0)	197230
14	0.0	0.0	0.0	chr1	147172643	147172660	(101783762)	+	(GCC)n	Simple_repeat	1	18	(0)	213747
4024	23.7	6.8	5.1	chr1	150168828	150170115	(98786307)	+	ERV3-16A3_I-int	LTR/ERVL	1599	2909	(2317)	218435
28	0.0	0.0	0.0	chr1	150364656	150364681	(98591741)	+	(CCG)n	Simple_repeat	1	26	(0)	218877
12	9.2	0.0	4.0	chr1	150364717	150364741	(98591681)	+	(GGC)n	Simple_repeat	1	25	(0)	218878
16	32.0	1.4	1.4	chr1	150876559	150876629	(98079793)	+	(CGC)n	Simple_repeat	1	72	(0)	220009
669	17.2	2.0	0.2	chr1	154295734	154295883	(94660539)	+	L1M4a1	LINE/L1	1631	1779	(800)	225844
1610	10.5	0.0	22.4	chr1	154295884	154296085	(94660337)	+	AluSz6	SINE/Alu	1	133	(179)	225857
12	12.6	0.0	3.6	chr1	155250854	155250881	(93705541)	+	(GCCTG)n	Simple_repeat	1	28	(0)	227620
14	16.7	0.0	5.3	chr1	155688320	155688357	(93268065)	+	(GGC)n	Simple_repeat	1	38	(0)	228557
1958	10.3	5.9	1.0	chr1	156193472	156193761	(92762661)	C	AluSx	SINE/Alu	(7)	305	1	229676
244	28.8	8.3	2.2	chr1	160727390	160727550	(88228872)	C	L2c	LINE/L2	(49)	3338	3144	236160
2246	12.1	0.0	0.0	chr1	161220992	161221296	(87735126)	C	AluSq2	SINE/Alu	(7)	306	2	237101
848	21.9	9.5	0.0	chr1	161427515	161427715	(87528707)	+	MER34	LTR/ERV1	321	542	(0)	237525
32	0.0	0.0	0.0	chr1	165393196	165393225	(83563197)	+	(TCTGTGG)n	Simple_repeat	1	30	(0)	243552
1963	14.2	12.6	1.0	chr1	173507536	173507927	(75448495)	+	MLT1C	LTR/ERVL-MaLR	20	463	(4)	255691
222	30.6	1.4	0.0	chr1	175169910	175169981	(73786441)	C	L2a	LINE/L2	(18)	3408	3336	258321
1514	18.9	2.5	1.8	chr1	179924349	179924699	(69031723)	C	MER21B	LTR/ERVL	(2)	936	498	265541
740	13.6	3.1	0.0	chr1	179924700	179924823	(69031599)	+	Tigger3a	DNA/TcMar-Tigger	1	128	(220)	265542
527	11.4	0.0	0.0	chr1	181937260	181937338	(67019084)	C	L1PA15	LINE/L1	(265)	5900	5822	268643
1892	19.3	6.4	2.3	chr1	184404290	184404677	(64551745)	C	MLT1A1	LTR/ERVL-MaLR	(3)	405	1	272600
455	23.0	4.4	0.6	chr1	201480658	201480810	(47475612)	+	MER5B	DNA/hAT-Charlie	5	161	(28)	296098
17	24.1	0.0	2.0	chr1	201480833	201480883	(47475539)	+	(GGCGG)n	Simple_repeat	1	51	(0)	296099
399	29.3	6.3	4.1	chr1	209219281	209219451	(39736971)	C	MIRb	SINE/MIR	(30)	238	64	309320
1028	27.4	8.0	4.9	chr1	210339368	210339854	(38616568)	+	MLT1H	LTR/ERVL-MaLR	47	549	(0)	311004
367	27.9	1.8	4.6	chr1	222464743	222464915	(26491507)	C	L1ME4c	LINE/L1	(101)	729	562	329166
573	5.3	0.0	0.0	chr1	222465005	222465079	(26491343)	+	tRNA-Thr-ACA	tRNA	1	75	(1)	329167
16	25.2	1.7	3.3	chr1	224114132	224114191	(24842231)	+	(GGC)n	Simple_repeat	1	61	(0)	331817
360	34.2	12.9	1.5	chr1	224317312	224317572	(24638850)	C	L2c	LINE/L2	(116)	3271	2977	332318
195	34.9	0.0	1.5	chr1	224317608	224317674	(24638748)	C	L2c	LINE/L2	(556)	2863	2798	332318
5277	20.8	4.8	7.7	chr1	224322966	224323966	(24632456)	+	MLT1B-int	LTR/ERVL-MaLR	162	1132	(239)	332331
493	26.6	8.8	5.3	chr1	224784500	224784686	(24171736)	+	LTR85a	LTR/Gypsy?	234	427	(275)	333154
12	21.7	0.0	0.0	chr1	224894937	224894968	(24061454)	+	(ACAATT)n	Simple_repeat	1	32	(0)	333325
1339	28.4	13.3	5.0	chr1	224922174	224922859	(24033563)	C	LTR41B	LTR/ERVL	(6)	752	1	333369
2140	24.2	8.4	1.8	chr1	225555934	225557216	(23399206)	C	L1ME3A	LINE/L1	(224)	5949	4561	334130
4120	17.8	1.2	3.6	chr1	225611778	225612607	(23343815)	+	L1MB5	LINE/L1	5355	6164	(10)	334228
726	25.2	14.2	5.2	chr1	225700877	225701240	(23255182)	C	MLT1L	LTR/ERVL-MaLR	(14)	596	195	334410
392	34.7	11.5	0.0	chr1	226179081	226179273	(22777149)	+	MIRb	SINE/MIR	50	267	(1)	335365
298	33.3	4.6	9.4	chr1	226179313	226179471	(22776951)	C	L3	LINE/CR1	(433)	3666	3516	335364
1566	15.0	5.1	1.1	chr1	226408353	226408632	(22547790)	C	AluJr	SINE/Alu	(20)	292	1	335835
268	22.8	0.0	15.6	chr1	226543797	226543874	(22412548)	C	MLT2C2	LTR/ERVL	(355)	109	47	336088
456	16.2	0.6	10.5	chr1	226543875	226543895	(22412527)	C	MLT1E3	LTR/ERVL-MaLR	(505)	175	46	336085
599	26.0	0.0	0.7	chr1	226543895	226544041	(22412381)	C	MLT2F	LTR/ERVL	(517)	146	1	336089
1650	8.1	3.0	0.0	chr1	227234805	227235027	(21721395)	+	MER30	DNA/hAT-Charlie	1	230	(0)	337136
3035	21.4	9.6	3.2	chr1	227996283	227997182	(20959240)	+	L1MEc	LINE/L1	311	1273	(5127)	338161
921	28.0	3.2	4.1	chr1	229849350	229849692	(19106730)	+	Charlie13b	DNA/hAT-Charlie	27	366	(146)	341014
713	30.8	5.5	9.2	chr1	229928634	229929026	(19027396)	+	L2a	LINE/L2	3049	3426	(0)	341142
1185	16.6	2.3	4.1	chr1	230632358	230632577	(18323845)	C	MER20	DNA/hAT-Charlie	(3)	216	1	342176
2788	26.4	4.0	2.6	chr1	230632578	230633027	(18323395)	C	L2a	LINE/L2	(709)	2710	2261	342174
619	24.4	7.7	0.6	chr1	231422715	231422871	(17533551)	C	MIRb	SINE/MIR	(96)	172	4	343475
1130	15.2	1.9	5.8	chr1	235253246	235253469	(13702953)	C	MER20	DNA/hAT-Charlie	(1)	218	4	349322
482	23.8	6.0	0.0	chr1	235253500	235253625	(13702797)	+	L1MA9	LINE/L1	6179	6312	(0)	349323
323	21.1	5.3	0.0	chr1	236519662	236519732	(12436690)	C	MER63A	DNA/hAT-Blackjack	(0)	210	136	351816
241	28.8	0.0	0.0	chr1	236519758	236519816	(12436606)	C	MER63A	DNA/hAT-Blackjack	(149)	61	3	351816
511	24.4	13.1	4.3	chr1	236519818	236519948	(12436474)	+	MER112	DNA/hAT-Charlie	1	154	(107)	351817
867	30.2	4.0	7.7	chr1	237034290	237034806	(11921616)	+	MLT1J	LTR/ERVL-MaLR	1	587	(8)	352668
2523	8.8	1.6	0.3	chr1	237152644	237153007	(11803415)	+	L1PA10	LINE/L1	4978	5346	(800)	352843
2622	20.2	5.0	5.1	chr1	237470692	237471420	(11485002)	C	LTR9A1	LTR/ERV1	(0)	728	1	353369
2489	6.1	1.3	0.0	chr1	240005170	240005466	(8950956)	+	AluSp	SINE/Alu	1	301	(12)	356979
263	29.4	13.5	1.8	chr1	240005639	240005749	(8950673)	+	L2b	LINE/L2	3236	3361	(14)	356980
825	20.3	3.3	0.0	chr1	240046128	240046304	(8910118)	+	MER58A	DNA/hAT-Charlie	42	224	(0)	357046
1122	28.8	2.7	6.0	chr1	240587885	240588386	(8368036)	+	LTR16C	LTR/ERVL	5	489	(0)	357874
3975	24.2	6.0	4.8	chr1	243230323	243231153	(5725269)	+	L1M4	LINE/L1	1072	1926	(5591)	362252
43	0.0	0.0	0.0	chr1	243231154	243231192	(5725230)	+	(CAT)n	Simple_repeat	1	39	(0)	362254
822	29.8	7.3	5.8	chr1	244779084	244779567	(4176855)	C	LTR86B1	LTR/ERVL	(1)	492	1	364746
1783	12.7	0.0	6.8	chr10	15527907	15528225	(118269197)	C	AluJb	SINE/Alu	(0)	312	11	394418
212	22.0	2.0	0.0	chr10	34392871	34392920	(99404502)	+	L2a	LINE/L2	3302	3352	(74)	424641
259	30.4	2.8	0.0	chr10	34392925	34392993	(99404429)	+	MER58A	DNA/hAT-Charlie	1	71	(153)	424642
260	20.4	0.0	0.0	chr10	34392988	34393036	(99404386)	+	Cheshire	DNA/hAT-Charlie	207	255	(2165)	424643
484	26.5	9.0	6.3	chr10	46228457	46228694	(87568728)	+	L1M2	LINE/L1	819	1063	(5786)	437378
1311	29.0	1.6	0.3	chr10	46228702	46229067	(87568355)	+	L1PA17	LINE/L1	888	1258	(5615)	437379
334	35.0	2.8	2.1	chr10	46516804	46516946	(87280476)	+	L2c	LINE/L2	3243	3386	(1)	437787
1221	21.9	10.5	0.8	chr10	59234695	59235072	(74562350)	C	LTR37A	LTR/ERV1	(0)	426	8	455263
347	32.0	1.9	5.0	chr10	63274743	63274903	(70522519)	C	L2a	LINE/L2	(3)	3423	3268	461457
1636	28.0	11.1	5.1	chr10	63437923	63439064	(70358358)	+	L2a	LINE/L2	2199	3426	(0)	461786
766	32.5	16.3	2.6	chr10	70459898	70460773	(63336649)	+	L2b	LINE/L2	1881	2910	(509)	473513
438	26.3	4.4	1.9	chr10	71211803	71211957	(62585465)	C	MIR	SINE/MIR	(59)	203	45	474801
1801	17.1	0.3	1.7	chr10	72612516	72612814	(61184608)	+	AluJr4	SINE/Alu	2	296	(16)	477644
273	34.3	1.9	1.9	chr10	74194138	74194241	(59603181)	C	L2c	LINE/L2	(226)	3161	3058	480754
11472	24.1	6.5	4.3	chr10	74717519	74718915	(59078507)	C	L1MA8	LINE/L1	(3785)	2941	1408	481666
184	24.2	0.0	0.0	chr10	74969694	74969726	(58827696)	C	L2a	LINE/L2	(370)	3056	3024	482208
19	0.0	0.0	0.0	chr10	76547495	76547518	(57249904)	+	(ATTT)n	Simple_repeat	1	24	(0)	484646
281	24.6	3.9	9.9	chr10	77308885	77309012	(56488410)	C	MIRb	SINE/MIR	(89)	119	4	485679
567	28.3	6.7	1.6	chr10	86712460	86712642	(47084780)	+	MIRb	SINE/MIR	28	220	(48)	499991
663	17.3	14.8	7.8	chr10	86712685	86712778	(47084644)	C	MER33	DNA/hAT-Charlie	(46)	278	185	499992
670	29.4	5.8	1.3	chr10	88895009	88895321	(44902101)	C	MLT1L	LTR/ERVL-MaLR	(79)	531	204	503528
1328	25.5	4.6	2.5	chr10	91032276	91032677	(42764745)	C	MLT1J	LTR/ERVL-MaLR	(74)	438	28	506695
258	31.0	1.0	2.0	chr10	92387543	92387644	(41409778)	C	MER5B	DNA/hAT-Charlie	(0)	178	78	509002
3825	17.2	6.8	3.8	chr10	96124232	96125093	(37672329)	C	L1M4c	LINE/L1	(5493)	2074	1186	515430
257	31.2	20.9	0.6	chr10	98134109	98134440	(35662982)	C	L2a	LINE/L2	(1177)	2242	1826	519432
180	32.2	18.3	2.6	chr10	100342669	100342824	(33454598)	+	L2c	LINE/L2	3018	3203	(184)	523181
296	33.5	5.6	3.2	chr10	100524718	100524874	(33272548)	+	L2	LINE/L2	2740	2900	(519)	523499
365	18.4	0.0	5.0	chr10	100524861	100524940	(33272482)	+	L2a	LINE/L2	3348	3423	(3)	523500
18	7.6	0.0	0.0	chr10	119596640	119596667	(14200755)	+	(AGG)n	Simple_repeat	1	28	(0)	554192
1409	31.0	7.5	3.2	chr11	628048	628757	(134457865)	C	L1MB3	LINE/L1	(114)	6069	5327	573647
17	23.6	0.0	5.0	chr11	1309629	1309688	(133776934)	+	(CCGCC)n	Simple_repeat	1	60	(0)	574452
19	25.9	0.0	1.8	chr11	11841953	11842009	(123244613)	+	(GGC)n	Simple_repeat	1	57	(0)	589842
309	36.1	4.2	1.7	chr11	36289123	36289309	(98797313)	C	MIR3	SINE/MIR	(46)	222	19	628185
15	4.7	0.0	0.0	chr11	43358854	43358875	(91727747)	+	(CTC)n	Simple_repeat	1	22	(0)	638336
227	28.7	19.2	2.4	chr11	46383146	46383270	(88703352)	C	MIRc	SINE/MIR	(84)	184	34	643867
308	16.9	1.5	0.0	chr11	47407079	47407143	(87679479)	+	UCON35	Unknown	33	98	(33)	645842
670	1.4	0.0	0.0	chr11	59550986	59551059	(75535563)	C	tRNA-Val-GTA	tRNA	(2)	74	1	656946
274	24.0	5.0	0.0	chr11	65418923	65419018	(69667604)	C	L2a	LINE/L2	(262)	3164	3064	667508
230	34.5	9.6	0.0	chr11	65487241	65487382	(69599240)	C	MIRc	SINE/MIR	(22)	246	90	667647
2097	24.4	5.7	0.0	chr11	73636986	73637464	(61449158)	C	MLT1J	LTR/ERVL-MaLR	(0)	512	5	682298
441	23.0	4.0	0.4	chr11	76152167	76152293	(58934329)	C	MIRc	SINE/MIR	(121)	147	11	687418
1318	20.6	23.3	1.7	chr11	93921793	93922353	(41164269)	+	LTR50	LTR/ERVL	32	759	(36)	716410
299	34.2	9.7	8.2	chr11	102430319	102430674	(32655948)	C	L2b	LINE/L2	(51)	3324	2963	727924
278	26.5	4.5	12.0	chr11	102430680	102430846	(32655776)	C	MIR	SINE/MIR	(23)	239	86	727925
637	20.4	6.8	2.7	chr11	111429015	111429194	(23657428)	C	L1MB4	LINE/L1	(0)	6180	6006	741365
688	15.3	2.2	3.0	chr11	111429218	111429352	(23657270)	C	LTR41B	LTR/ERVL	(623)	135	2	741366
317	26.4	6.2	3.2	chr11	111429354	111429447	(23657175)	C	MIR	SINE/MIR	(113)	149	53	741367
1935	19.2	20.3	5.0	chr12	1747424	1748239	(131527070)	C	L1M4b	LINE/L1	(4378)	2489	1546	781208
594	27.2	11.3	1.2	chr12	1804562	1804814	(131470495)	+	MLT1J	LTR/ERVL-MaLR	28	309	(203)	781294
386	37.4	9.1	1.2	chr12	1977288	1977531	(131297778)	+	Tigger19b	DNA/TcMar-Tigger	219	483	(67)	781509
12	16.3	2.8	2.7	chr12	6556140	6556175	(126719134)	+	G-rich	Low_complexity	1	37	(0)	788936
3994	14.0	2.3	0.5	chr12	10360930	10361561	(122913748)	C	LTR9B	LTR/ERV1	(0)	644	1	795146
834	11.6	0.0	0.0	chr12	12626775	12626886	(120648423)	+	FLAM_A	SINE/Alu	21	132	(10)	798470
2241	14.1	9.9	1.7	chr12	12626902	12627365	(120647944)	+	L1MC2	LINE/L1	5814	6344	(0)	798469
498	30.1	3.4	1.1	chr12	12715692	12715866	(120559443)	+	MIR3	SINE/MIR	15	193	(15)	798628
1299	13.6	1.8	2.7	chr12	12720612	12720831	(120554478)	C	MER20	DNA/hAT-Charlie	(1)	218	1	798631
724	26.4	8.7	12.5	chr12	13361977	13362704	(119912605)	C	LTR41C	LTR/ERVL	(3)	698	1	799754
1680	28.1	7.2	7.8	chr12	13362705	13362894	(119912415)	C	L1MC4	LINE/L1	(5710)	505	334	799753
5038	11.5	7.7	0.3	chr12	15688314	15689073	(117586236)	+	LTR1A2	LTR/ERV1	17	837	(0)	803141
715	24.1	4.5	5.5	chr12	32987460	32987999	(100287310)	C	MER67C	LTR/ERV1	(0)	543	59	828480
846	20.0	6.5	3.9	chr12	40011163	40011370	(93263939)	C	MER20	DNA/hAT-Charlie	(0)	219	6	833172
500	19.7	12.8	0.0	chr12	45415355	45415476	(87859833)	+	Charlie8	DNA/hAT-Charlie	119	258	(2170)	840769
13	0.0	5.0	0.0	chr12	45727547	45727566	(87547743)	+	(GGC)n	Simple_repeat	1	21	(0)	841277
37	8.0	0.0	0.0	chr12	47904085	47904137	(85371172)	+	(GAG)n	Simple_repeat	1	53	(0)	844399
549	13.1	0.2	2.9	chr12	52156769	52156871	(81118438)	C	FLAM_C	SINE/Alu	(0)	133	32	852533
352	30.5	8.6	5.4	chr12	52175909	52176223	(81099086)	+	MamGypsy2-I	LTR/Gypsy	486	811	(3355)	852569
440	28.1	8.2	0.7	chr12	53601418	53601553	(79673756)	+	UCON62	DNA?	1	147	(30)	855057
465	31.2	5.1	8.9	chr12	54386818	54387063	(78888246)	C	MIRb	SINE/MIR	(20)	248	13	856360
13	19.2	0.0	0.0	chr12	62602759	62602788	(70672521)	+	(GGCGG)n	Simple_repeat	1	30	(0)	868191
560	30.3	9.7	5.1	chr12	67433469	67433765	(65841544)	+	Charlie29a	DNA/hAT-Charlie	222	532	(187)	875912
1398	21.3	15.1	0.3	chr12	67433807	67434155	(65841154)	+	MER57D	LTR/ERV1	2	411	(0)	875914
869	16.0	0.8	0.0	chr12	69502403	69502533	(63772776)	C	FLAM_C	SINE/Alu	(11)	132	1	879412
440	26.9	12.5	2.7	chr12	69502559	69502745	(63772564)	C	L2a	LINE/L2	(6)	3420	3213	879413
1669	25.8	6.1	3.6	chr12	79535587	79535885	(53739424)	+	MLT1J	LTR/ERVL-MaLR	2	307	(205)	893639
560	24.4	8.1	2.0	chr12	79535886	79536082	(53739227)	+	MER63A	DNA/hAT-Blackjack	1	210	(0)	893640
1335	32.9	3.1	4.3	chr12	80014149	80014827	(53260482)	C	L1M2	LINE/L1	(6123)	730	60	894425
574	30.9	8.6	8.8	chr12	93888441	93889103	(39386206)	C	L2c	LINE/L2	(468)	2951	2298	914282
684	22.9	12.8	5.6	chr12	94551254	94551568	(38723741)	+	MLT1L	LTR/ERVL-MaLR	197	542	(68)	915395
1393	26.2	20.3	3.0	chr12	98815106	98816257	(34459052)	+	L2a	LINE/L2	1721	3190	(197)	922971
1719	17.3	10.3	3.2	chr12	98973419	98973830	(34301479)	+	MER44B	DNA/TcMar-Tigger	6	450	(100)	923203
2455	18.8	10.4	0.4	chr12	103925325	103925810	(29349499)	+	MLT1F	LTR/ERVL-MaLR	1	540	(8)	931549
5224	21.6	9.8	5.0	chr12	106217599	106218687	(27056622)	C	L1MEc	LINE/L1	(4615)	1800	505	935829
619	28.6	4.8	4.0	chr12	107147540	107147787	(26127522)	C	LTR101_Mam	LTR/ERVL	(579)	250	1	937503
583	9.0	0.0	1.1	chr12	116214047	116214136	(17061173)	+	MER66D	LTR/ERV1	312	400	(84)	957536
2237	11.8	0.7	0.0	chr12	121185774	121186078	(12089231)	+	AluSx1	SINE/Alu	1	307	(5)	968791
1085	24.2	14.3	8.8	chr12	121186079	121186352	(12088957)	+	MLT1G	LTR/ERVL-MaLR	231	595	(0)	968790
265	17.0	0.0	0.4	chr12	121888506	121888557	(11386752)	+	L2c	LINE/L2	3346	3424	(2)	970592
1136	26.4	7.7	1.0	chr12	122064182	122064568	(11210741)	+	MLT1K	LTR/ERVL-MaLR	145	559	(36)	971015
188	35.2	7.4	7.4	chr12	122413660	122413754	(10861555)	+	L3b	LINE/CR1	5018	5112	(120)	971745
11012	9.0	3.9	0.6	chr12	123249828	123251861	(10023448)	C	L1PBa1	LINE/L1	(4515)	2348	252	973619
4722	1.8	0.0	0.0	chr13	18211706	18212272	(96152056)	+	HSATI	Satellite	1	567	(10)	990834
1327	21.0	5.0	3.4	chr13	23889835	23890189	(90474139)	+	MLT1C-int	LTR/ERVL-MaLR	1010	1370	(1)	999488
6108	8.8	2.5	1.8	chr13	27125487	27126431	(87237897)	+	L1P2	LINE/L1	5	956	(5228)	1004359
13044	18.0	4.4	2.8	chr13	29800772	29804771	(84559557)	+	L1PREC2	LINE/L1	1386	5457	(2684)	1008648
364	30.5	6.8	3.8	chr13	33762078	33762234	(80602094)	C	MIRb	SINE/MIR	(0)	268	107	1014777
385	32.0	5.6	0.2	chr13	45206315	45206468	(69157860)	+	L2b	LINE/L2	3238	3421	(5)	1031792
369	20.1	17.3	2.8	chr13	111984366	111984508	(2379820)	C	MIRb	SINE/MIR	(24)	244	77	1123030
273	20.6	6.8	2.9	chr13	111984541	111984610	(2379718)	C	MamTip2	DNA/hAT-Tip100	(183)	122	50	1123031
294	26.4	7.8	3.6	chr14	23469077	23469186	(83574532)	C	MIR3	SINE/MIR	(49)	159	45	1132899
310	29.6	3.4	0.0	chr14	32225143	32225284	(74818434)	C	X6A_LINE	LINE/CR1	(13)	1067	921	1144866
510	29.3	8.8	6.5	chr14	33945348	33945657	(73098061)	+	MLT1O	LTR/ERVL-MaLR	71	388	(154)	1146937
383	23.4	14.6	6.0	chr14	36067574	36067857	(70975861)	+	MLT1G	LTR/ERVL-MaLR	236	540	(8)	1151103
656	25.3	5.7	16.1	chr14	36091187	36091540	(70952178)	C	MLT1J	LTR/ERVL-MaLR	(174)	338	3	1151143
262	31.7	0.0	7.3	chr14	61625156	61625291	(45418427)	+	L2c	LINE/L2	1922	2047	(1372)	1186796
584	29.1	10.7	4.6	chr14	61625349	61625805	(45417913)	+	MLT1L	LTR/ERVL-MaLR	121	608	(2)	1186797
343	26.7	10.4	1.0	chr14	91380456	91380671	(15663047)	C	L1MC5a	LINE/L1	(158)	2619	2521	1235597
2709	25.0	1.9	2.8	chr14	91762282	91762567	(15281151)	+	L1PB4	LINE/L1	3167	3454	(4115)	1236273
32	17.2	3.3	4.2	chr14	100240046	100240137	(6803581)	+	(GGC)n	Simple_repeat	1	95	(0)	1251506
666	22.9	12.3	6.1	chr14	101415231	101415458	(5628260)	+	MIR	SINE/MIR	19	262	(0)	1253122
32	2.4	0.0	6.2	chr14	102438215	102438262	(4605456)	+	(CCCGCT)n	Simple_repeat	1	48	(0)	1254928
23	18.4	2.0	0.0	chr15	41116161	41116210	(60874979)	+	(GGC)n	Simple_repeat	1	51	(0)	1292535
18	4.7	0.0	0.0	chr15	43510503	43510524	(58480665)	+	(A)n	Simple_repeat	1	22	(0)	1297148
15	25.1	3.5	1.7	chr15	43510525	43510558	(58480631)	+	(ACAA)n	Simple_repeat	3	60	(0)	1297149
410	10.2	1.7	0.0	chr15	55767250	55767308	(46223881)	+	MER66D	LTR/ERV1	337	396	(88)	1316149
202	27.5	8.1	2.4	chr15	55800010	55800091	(46191098)	C	MIR3	SINE/MIR	(21)	187	101	1316225
1208	23.0	13.8	5.2	chr15	56018072	56018393	(45972796)	+	MER34C2	LTR/ERV1	1	364	(423)	1316576
2163	19.3	9.7	4.1	chr15	63145376	63145882	(38845307)	C	MLT1F	LTR/ERVL-MaLR	(1)	547	10	1328039
13	21.9	0.0	2.6	chr15	65792225	65792263	(36198926)	+	(GCCTCT)n	Simple_repeat	1	39	(0)	1333345
687	26.1	11.2	9.7	chr15	67410179	67410773	(34580416)	C	MLT1L	LTR/ERVL-MaLR	(0)	610	16	1336557
19	19.5	3.1	8.1	chr15	68818107	68818202	(33172987)	+	(CCGCGCC)n	Simple_repeat	1	99	(0)	1339116
13	28.5	1.3	6.6	chr15	68819904	68819978	(33171211)	+	GA-rich	Low_complexity	1	76	(0)	1339120
25192	12.9	6.4	6.1	chr15	69008128	69008631	(32982558)	C	MER57A-int	LTR/ERV1	(4450)	1737	1321	1339433
11	11.2	6.9	0.0	chr15	70099568	70099596	(31891593)	+	(TCCCCC)n	Simple_repeat	1	31	(0)	1341465
464	30.6	13.8	3.6	chr15	70582287	70582859	(31408330)	C	L2a	LINE/L2	(87)	3300	2655	1342420
1028	22.5	2.7	5.6	chr15	71892470	71892700	(30098489)	+	MER58A	DNA/hAT-Charlie	1	224	(0)	1344529
891	30.8	12.4	7.5	chr15	72057401	72057934	(29933255)	+	MLT1K	LTR/ERVL-MaLR	21	584	(11)	1344826
877	24.0	7.8	11.9	chr15	76863638	76864108	(25127081)	+	MLT1G3	LTR/ERVL-MaLR	1	440	(115)	1353131
226	15.0	2.4	0.0	chr15	76962170	76962209	(25028980)	+	MER91C	DNA/hAT-Tip100	65	105	(35)	1353306
930	26.4	13.5	1.7	chr15	76962327	76962973	(25028216)	+	L2a	LINE/L2	2548	3314	(112)	1353307
16	4.5	0.0	0.0	chr15	80989715	80989737	(21001452)	+	(AGC)n	Simple_repeat	1	23	(0)	1360490
416	27.0	10.0	12.4	chr15	89739914	89740171	(12251018)	+	MIR	SINE/MIR	8	258	(4)	1374787
631	29.5	8.4	9.1	chr15	90343343	90343939	(11647250)	C	MLT1K	LTR/ERVL-MaLR	(0)	595	3	1376170
21	12.2	2.1	4.1	chr16	5071862	5071909	(85266436)	+	(TGC)n	Simple_repeat	1	49	(0)	1402509
316	21.6	8.6	0.0	chr16	8752299	8752372	(81585973)	+	MIRb	SINE/MIR	20	100	(168)	1409778
14	10.9	5.0	9.5	chr16	8963818	8963877	(81374468)	+	(TCGGCG)n	Simple_repeat	1	63	(0)	1410168
32	16.0	7.9	1.8	chr16	8963924	8964025	(81374320)	+	(CGCGGAG)n	Simple_repeat	1	108	(0)	1410169
336	24.8	5.5	2.4	chr16	14321673	14321798	(76016547)	+	MLT1K	LTR/ERVL-MaLR	144	270	(325)	1421853
1142	8.9	1.4	0.0	chr16	22228342	22228487	(68109858)	+	AluSx3	SINE/Alu	1	148	(163)	1439590
243	27.2	14.2	10.3	chr16	22228520	22228810	(68109535)	C	HERV1_LTRe	LTR/ERV1	(24)	513	210	1439591
734	0.0	0.0	0.0	chr16	22297140	22297221	(68041124)	+	tRNA-Leu-CTY	tRNA	1	82	(3)	1439785
46	5.7	0.0	0.0	chr16	24729669	24729723	(65608622)	+	(GCG)n	Simple_repeat	1	55	(0)	1445420
16	18.9	2.4	0.0	chr16	28212035	28212076	(62126269)	+	G-rich	Low_complexity	1	43	(0)	1452865
190	16.5	22.9	2.1	chr16	28212245	28212337	(62126008)	C	L2a	LINE/L2	(3)	3423	3306	1452866
313	26.7	15.3	1.7	chr16	29678727	29678844	(60659501)	C	MIRb	SINE/MIR	(118)	150	14	1456280
241	36.5	10.1	1.2	chr16	29943960	29944266	(60394079)	C	L2c	LINE/L2	(609)	2810	2471	1456923
18	7.7	0.0	0.0	chr16	30698185	30698212	(59640133)	+	(GTG)n	Simple_repeat	1	28	(0)	1458687
15	13.9	6.2	0.0	chr16	49704738	49704769	(40633576)	+	(CA)n	Simple_repeat	1	34	(0)	1470959
184	19.1	15.0	1.4	chr16	57187618	57187686	(33150659)	+	MIRc	SINE/MIR	179	258	(10)	1484534
3926	11.9	8.3	12.6	chr16	75116948	75117367	(15220978)	+	MER4D1	LTR/ERV1	1	410	(490)	1516116
2453	14.6	6.7	0.5	chr17	1369700	1370119	(81887322)	C	Tigger1	DNA/TcMar-Tigger	(0)	2418	1971	1546958
2273	6.7	0.3	1.8	chr17	1370120	1370430	(81887011)	C	AluY	SINE/Alu	(0)	311	1	1546959
16	8.5	4.7	6.7	chr17	1456146	1456192	(81801249)	+	(GCC)n	Simple_repeat	1	46	(0)	1547172
353	30.1	5.5	0.0	chr17	2786212	2786314	(80471127)	C	MIR3	SINE/MIR	(68)	140	32	1549946
630	20.0	37.0	1.1	chr17	7865398	7865751	(75391690)	C	MLT1G1	LTR/ERVL-MaLR	(70)	509	3	1559653
226	27.4	0.0	0.0	chr17	8221309	8221359	(75036082)	+	MIRc	SINE/MIR	103	153	(115)	1560358
659	1.4	0.0	0.0	chr17	8221548	8221619	(75035822)	+	tRNA-Gly-GGA	tRNA	1	72	(3)	1560359
652	1.4	0.0	0.0	chr17	8222831	8222904	(75034537)	C	tRNA-Pro-CCG	tRNA	(1)	74	1	1560361
345	31.6	14.9	0.6	chr17	16438620	16438801	(66818640)	C	MIRc	SINE/MIR	(7)	261	56	1574991
1952	20.8	16.0	4.2	chr17	27276652	27277228	(55980213)	+	MLT2F	LTR/ERVL	3	660	(3)	1586433
33	12.7	0.0	0.0	chr17	30711029	30711088	(52546353)	+	(CT)n	Simple_repeat	1	60	(0)	1593101
23	18.9	3.5	5.6	chr17	31095059	31095145	(52162296)	+	(CCCCCT)n	Simple_repeat	1	90	(0)	1593994
1759	26.5	4.5	2.7	chr17	36145703	36146213	(47111228)	C	MLT1A0-int	LTR/ERVL-MaLR	(549)	860	334	1603456
15	0.0	0.0	4.3	chr17	37556902	37556924	(45700517)	+	(TTGT)n	Simple_repeat	1	23	(0)	1606085
641	2.7	0.0	0.0	chr17	39154490	39154562	(44102879)	C	tRNA-Cys-TGY	tRNA	(2)	73	1	1609433
1893	17.3	0.3	1.6	chr17	39486254	39486565	(43770876)	C	AluJo	SINE/Alu	(4)	308	1	1610214
584	28.7	14.4	2.5	chr17	39688303	39688624	(43568817)	+	L2a	LINE/L2	2617	2983	(436)	1610581
861	15.0	8.0	1.2	chr17	40218981	40219142	(43038299)	+	MER5B	DNA/hAT-Charlie	1	174	(4)	1611610
12	17.0	8.3	1.9	chr17	40219255	40219302	(43038139)	+	(TCTCTCC)n	Simple_repeat	1	52	(0)	1611611
214	24.1	17.1	2.2	chr17	41738204	41738292	(41519149)	C	MIRc	SINE/MIR	(49)	219	115	1614171
53	0.0	0.0	0.0	chr17	42183413	42183460	(41073981)	+	(CCTT)n	Simple_repeat	1	48	(0)	1615093
13	33.2	0.0	1.8	chr17	42676646	42676701	(40580740)	+	GA-rich	Low_complexity	1	56	(0)	1616131
393	26.7	4.8	11.3	chr17	42678934	42679136	(40578305)	C	L3	LINE/CR1	(25)	4074	3886	1616136
295	28.7	11.3	5.6	chr17	45940576	45940859	(37316582)	+	CR1-3_Croc	LINE/CR1	2684	2985	(620)	1623082
17	12.4	2.7	2.6	chr17	46193329	46193365	(37064076)	+	(CGG)n	Simple_repeat	1	38	(0)	1623547
15	8.7	0.0	0.0	chr17	46193431	46193455	(37063986)	+	(GAGC)n	Simple_repeat	1	25	(0)	1623548
2027	16.0	0.0	0.0	chr17	47280351	47280656	(35976785)	C	AluSz	SINE/Alu	(6)	306	1	1625719
835	25.3	16.0	2.5	chr17	50158290	50158808	(33098633)	C	MLT1L	LTR/ERVL-MaLR	(15)	595	4	1631255
486	31.4	6.7	2.5	chr17	55377912	55378153	(27879288)	C	MLT1L	LTR/ERVL-MaLR	(0)	610	358	1639524
1476	25.4	10.9	5.0	chr17	56600142	56600659	(26656782)	C	MLT1H1	LTR/ERVL-MaLR	(0)	555	4	1641551
595	20.4	11.4	6.4	chr17	57775041	57775213	(25482228)	+	MLT1J1	LTR/ERVL-MaLR	21	206	(205)	1643820
248	33.9	3.5	2.5	chr17	58413650	58413849	(24843592)	+	CR1-13_AMi	LINE/CR1	224	425	(299)	1644948
203	24.2	15.3	0.5	chr17	58413885	58413977	(24843464)	+	X6A_LINE	LINE/CR1	963	1080	(0)	1644949
1332	25.3	3.6	11.2	chr17	59475901	59476411	(23781030)	+	MLT1H1	LTR/ERVL-MaLR	1	502	(53)	1647332
274	31.0	17.4	1.8	chr17	66906506	66906722	(16350719)	C	L2c	LINE/L2	(17)	3370	3113	1661027
233	34.7	5.5	9.0	chr17	74457575	74457707	(8799734)	+	L2c	LINE/L2	3256	3383	(4)	1674191
630	0.0	0.0	0.0	chr17	75034432	75034503	(8222938)	C	tRNA-Arg-AGG	tRNA	(4)	72	1	1675213
31	24.3	5.9	0.0	chr17	76697885	76697988	(6559453)	+	GA-rich	Low_complexity	1	110	(0)	1678562
299	31.2	6.1	10.7	chr17	77233707	77233997	(6023444)	+	MLT1J2	LTR/ERVL-MaLR	135	448	(0)	1679691
238	23.8	0.0	16.5	chr17	77234120	77234240	(6023201)	C	L2a	LINE/L2	(469)	2950	2850	1679690
537	33.6	9.3	0.5	chr17	78950194	78950417	(4307024)	+	MIR	SINE/MIR	13	258	(4)	1682745
318	31.8	16.4	1.1	chr17	81665674	81665854	(1591587)	+	MIRb	SINE/MIR	45	258	(10)	1686612
235	25.3	14.6	0.0	chr17	81665925	81666070	(1591371)	+	L2	LINE/L2	113	283	(3136)	1686613
332	31.5	9.8	3.2	chr18	11872708	11872897	(68500388)	C	MIRb	SINE/MIR	(36)	232	29	1706481
187	29.2	9.7	4.4	chr18	47754553	47754620	(32618665)	+	Tigger19b	DNA/TcMar-Tigger	186	257	(293)	1750744
15	16.3	0.0	2.8	chr18	48676988	48677023	(31696262)	+	G-rich	Low_complexity	1	36	(0)	1752281
219	35.9	3.9	1.6	chr18	49856426	49856580	(30516705)	+	MIR3	SINE/MIR	1	155	(53)	1754298
2105	19.0	10.4	7.2	chr18	58157894	58158438	(22214847)	C	MLT1F1	LTR/ERVL-MaLR	(0)	569	5	1766902
1458	26.0	3.6	0.0	chr19	5452947	5453315	(53164301)	+	MLT1J	LTR/ERVL-MaLR	23	405	(107)	1808033
288	31.2	9.4	0.0	chr19	5689973	5690068	(52927548)	C	MIR	SINE/MIR	(108)	154	49	1808598
1986	16.1	0.0	1.3	chr19	6126095	6126392	(52491224)	C	AluJr	SINE/Alu	(18)	294	1	1809479
21	0.0	0.0	0.0	chr19	6126404	6126426	(52491190)	+	(AC)n	Simple_repeat	1	23	(0)	1809480
1379	25.1	9.3	6.3	chr19	6126478	6126984	(52490632)	C	LTR55	LTR/ERVL?	(24)	524	1	1809481
297	19.9	2.8	1.4	chr19	7171352	7171455	(51446161)	+	MLT1J	LTR/ERVL-MaLR	222	404	(206)	1812176
430	25.0	6.0	2.1	chr19	9140307	9140449	(49477167)	+	LTR33B	LTR/ERVL	77	225	(278)	1816898
284	33.0	19.6	2.0	chr19	10228987	10229283	(48388333)	+	L2a	LINE/L2	2720	3081	(338)	1819214
406	28.9	2.5	8.2	chr19	10858474	10858643	(47758973)	C	MIRb	SINE/MIR	(13)	255	96	1820853
471	17.5	4.6	1.0	chr19	15286777	15286880	(43330736)	C	Charlie5	DNA/hAT-Charlie	(2494)	130	23	1831504
218	26.4	13.8	1.9	chr19	16115732	16115839	(42501777)	C	L2a	LINE/L2	(9)	3417	3295	1833157
21	11.2	0.0	0.0	chr19	17305232	17305261	(41312355)	+	(T)n	Simple_repeat	1	30	(0)	1835988
246	24.4	19.5	1.0	chr19	17305318	17305428	(41312188)	C	MIR3	SINE/MIR	(102)	166	31	1835989
16	3.2	5.6	5.3	chr19	18919308	18919343	(39698273)	+	(CCGGAGG)n	Simple_repeat	1	38	(0)	1839830
2422	19.2	2.4	9.2	chr19	28631687	28632074	(29985542)	+	L1MA5A	LINE/L1	7065	7365	(351)	1849065
1550	29.2	5.5	2.8	chr19	28632089	28632691	(29984925)	+	L1PA15-16	LINE/L1	9	628	(6706)	1849072
2109	12.6	3.2	0.0	chr19	29762668	29762968	(28854648)	C	AluSz6	SINE/Alu	(1)	311	1	1850785
13	5.3	0.0	0.0	chr19	29762992	29763011	(28854605)	+	(AAG)n	Simple_repeat	1	20	(0)	1850786
1722	16.2	0.3	1.8	chr19	29943853	29944136	(28673480)	+	AluJr	SINE/Alu	1	280	(32)	1851209
13	17.1	3.0	0.0	chr19	32345689	32345721	(26271895)	+	G-rich	Low_complexity	1	34	(0)	1854639
16	18.3	2.2	2.2	chr19	33295584	33295628	(25321988)	+	(GAGGAT)n	Simple_repeat	1	46	(0)	1856549
2068	22.5	3.8	5.3	chr19	33784881	33785392	(24832224)	+	MLT1D	LTR/ERVL-MaLR	1	504	(1)	1857308
682	29.4	16.3	4.3	chr19	34274411	34274663	(24342953)	C	L2c	LINE/L2	(793)	2626	2331	1858308
15	19.7	0.0	0.0	chr19	34926695	34926723	(23690893)	+	(T)n	Simple_repeat	1	29	(0)	1859341
1625	16.9	2.3	0.4	chr19	35070312	35070571	(23547045)	C	AluJb	SINE/Alu	(10)	302	38	1859647
1152	26.3	10.4	2.5	chr19	35070572	35070900	(23546716)	C	MLT1G	LTR/ERVL-MaLR	(202)	389	4	1859646
259	32.0	15.0	0.0	chr19	35641406	35641530	(22976086)	+	MIR	SINE/MIR	116	262	(0)	1860830
1270	20.8	1.2	4.8	chr19	35828564	35828827	(22788789)	+	MER58B	DNA/hAT-Charlie	85	339	(2)	1861260
357	30.4	3.1	0.0	chr19	36107152	36107276	(22510340)	C	MLT1L	LTR/ERVL-MaLR	(143)	467	339	1861888
1263	8.9	11.1	5.1	chr19	36574337	36574572	(22043044)	C	MER4D1	LTR/ERV1	(358)	252	1	1862815
551	25.5	16.5	0.2	chr19	36574576	36574951	(22042665)	C	L1ME3	LINE/L1	(122)	6042	5561	1862816
1476	23.4	7.2	2.1	chr19	36834268	36834760	(21782856)	+	L1M5	LINE/L1	5189	5700	(473)	1863342
195	21.9	15.1	0.0	chr19	38264104	38264176	(20353440)	+	L2b	LINE/L2	3276	3361	(14)	1866264
213	26.5	16.4	0.3	chr19	38374243	38374355	(20243261)	+	MIR	SINE/MIR	18	155	(113)	1866528
1053	29.9	6.4	3.8	chr19	38431342	38431828	(20185788)	+	L1ME5	LINE/L1	5442	5950	(244)	1866640
871	9.3	0.8	0.0	chr19	38832012	38832129	(19785487)	+	AluYc	SINE/Alu	181	299	(0)	1867545
261	26.9	0.0	3.7	chr19	39183852	39183932	(19433684)	C	MER5B	DNA/hAT-Charlie	(94)	84	7	1868470
513	16.7	14.3	0.0	chr19	39813203	39813310	(18804306)	+	MER5A1	DNA/hAT-Charlie	34	159	(7)	1869678
1208	20.8	11.7	4.1	chr19	39983737	39984236	(18633380)	C	MER51E	LTR/ERV1	(0)	640	1	1870064
321	22.8	16.7	0.0	chr19	40190598	40190768	(18426848)	+	MIR	SINE/MIR	41	261	(7)	1870439
213	32.4	2.8	1.9	chr19	40433754	40433860	(18183756)	C	L2a	LINE/L2	(198)	3177	3070	1871042
15	14.7	0.0	0.0	chr19	40433948	40433977	(18183639)	+	(GGGA)n	Simple_repeat	1	30	(0)	1871050
188	23.7	7.0	3.1	chr19	40444957	40445052	(18172564)	+	L2a	LINE/L2	2821	2920	(499)	1871079
302	22.7	1.3	3.9	chr19	40445156	40445233	(18172383)	+	L2a	LINE/L2	3327	3402	(24)	1871079
243	32.7	3.2	1.7	chr19	40598566	40598696	(18018920)	C	MIR3	SINE/MIR	(136)	132	2	1871499
240	28.8	16.9	1.7	chr19	40716456	40716575	(17901041)	+	MIRb	SINE/MIR	117	258	(10)	1871777
268	29.8	0.1	1.6	chr19	40716590	40716687	(17900929)	C	MIRc	SINE/MIR	(87)	121	27	1871778
2337	8.0	0.3	1.3	chr19	40754101	40754399	(17863217)	C	AluSg7	SINE/Alu	(13)	296	1	1871874
196	38.9	5.5	0.4	chr19	40754455	40754694	(17862922)	C	L2c	LINE/L2	(167)	3220	2968	1871875
389	29.3	4.6	4.6	chr19	40897255	40897420	(17720196)	C	MIR	SINE/MIR	(8)	254	88	1872193
13	4.5	0.0	7.4	chr19	42075887	42075913	(16541703)	+	(GGA)n	Simple_repeat	1	27	(0)	1874519
236	21.7	0.2	12.0	chr19	42081580	42081668	(16535948)	+	L2a	LINE/L2	3284	3415	(11)	1874522
221	30.7	1.4	1.4	chr19	42433373	42433462	(16184154)	+	MIR1_Amn	SINE/MIR	66	160	(70)	1875275
311	20.8	12.2	3.7	chr19	43574748	43574882	(15042734)	C	MIR3	SINE/MIR	(87)	181	32	1877148
287	21.4	13.2	0.0	chr19	43670480	43670591	(14947025)	+	L1MC5a	LINE/L1	2446	2574	(203)	1877381
326	26.2	4.8	0.0	chr19	43670624	43670703	(14946913)	+	L2a	LINE/L2	3340	3423	(3)	1877382
1565	7.2	4.2	2.4	chr19	43670766	43670973	(14946643)	+	AluSc	SINE/Alu	97	308	(1)	1877383
13	18.9	2.8	0.0	chr19	43766656	43766691	(14850925)	+	(GCCCCA)n	Simple_repeat	1	37	(0)	1877624
3328	12.6	7.9	3.1	chr19	44111865	44112444	(14505172)	C	LTR9	LTR/ERV1	(0)	612	3	1878223
14	15.8	0.0	5.1	chr19	44212678	44212716	(14404900)	+	(GAGGCC)n	Simple_repeat	1	39	(0)	1878386
4739	19.4	8.5	7.7	chr19	44255301	44256661	(14360955)	+	L1M4	LINE/L1	1058	2459	(5161)	1878450
32	0.0	0.0	0.0	chr19	47035192	47035221	(11582395)	+	(AAG)n	Simple_repeat	1	30	(0)	1885120
17	18.7	3.3	4.8	chr19	47113141	47113200	(11504416)	+	(GAGGCG)n	Simple_repeat	1	62	(0)	1885281
181	18.0	0.0	10.7	chr19	48954548	48954603	(9663013)	+	L2	LINE/L2	3019	3068	(351)	1890057
438	31.4	7.4	6.0	chr19	54391245	54391635	(4225981)	C	L2a	LINE/L2	(1)	3425	2852	1901630
2154	10.8	1.0	2.9	chr19	54448652	54448966	(4168650)	+	AluSg	SINE/Alu	1	309	(1)	1901778
2264	16.8	3.8	5.3	chr19	55639036	55639068	(2978548)	C	MSTB	LTR/ERVL-MaLR	(393)	33	2	1904210
987	17.5	0.5	2.1	chr19	55639114	55639306	(2978310)	+	MER20	DNA/hAT-Charlie	1	190	(29)	1904213
462	26.9	10.4	3.2	chr19	56252868	56253117	(2364499)	C	LTR41B	LTR/ERVL	(488)	270	1	1905468
31543	14.0	4.2	2.1	chr19	57564659	57567399	(1050217)	C	LTR25-int	LTR/ERV1	(3703)	3485	633	1907989
3018	19.2	15.4	4.6	chr2	38739320	38740026	(203453503)	+	L1M4a2	LINE/L1	1344	2140	(516)	1969867
605	29.6	8.6	3.5	chr2	74509220	74509332	(167684197)	+	L2c	LINE/L2	2814	2919	(500)	2025507
377	30.5	11.7	14.5	chr2	74509360	74509746	(167683783)	+	L2c	LINE/L2	3052	3426	(0)	2025507
1011	18.3	4.6	1.9	chr2	75677405	75677616	(166515913)	+	MER20	DNA/hAT-Charlie	2	219	(0)	2027346
1058	18.0	5.9	1.0	chr2	112259514	112259721	(129933808)	C	MER20	DNA/hAT-Charlie	(0)	219	1	2074806
3875	22.4	5.9	7.0	chr2	112259722	112260072	(129933457)	+	ERVL-E-int	LTR/ERVL	4791	5145	(522)	2074805
361	24.8	19.5	0.0	chr2	181875589	181875741	(60317788)	C	MER53	DNA/hAT	(2)	191	2	2173238
705	30.1	1.6	4.2	chr2	181875742	181875807	(60317722)	C	MLT1L	LTR/ERVL-MaLR	(191)	419	356	2173237
2064	24.5	13.8	0.7	chr2	217488297	217489137	(24704392)	+	L1ME3Cz	LINE/L1	40	997	(0)	2224474
2526	5.8	0.0	1.0	chr2	218388088	218388396	(23805133)	+	AluSc	SINE/Alu	1	306	(3)	2226012
13	11.0	9.8	2.2	chr2	231662447	231662487	(10531042)	+	(CCGCT)n	Simple_repeat	1	45	(0)	2247398
335	17.6	10.8	1.3	chr2	234881790	234881864	(7311665)	+	MLT1M	LTR/ERVL-MaLR	96	178	(494)	2252707
2194	24.6	5.8	0.0	chr20	18365686	18366192	(46077975)	+	MLT1F	LTR/ERVL-MaLR	1	538	(10)	2292546
2060	16.4	2.9	1.3	chr20	18411722	18412097	(46032070)	C	MLT1A1	LTR/ERVL-MaLR	(0)	408	27	2292622
564	32.0	2.7	3.1	chr20	24766632	24766857	(39677310)	C	MLT1J	LTR/ERVL-MaLR	(201)	311	87	2301315
15	29.0	0.0	0.0	chr20	25390896	25390945	(39053222)	+	(CCCCCG)n	Simple_repeat	1	50	(0)	2302098
305	29.9	9.2	5.1	chr20	31561880	31562076	(32882091)	C	MLT1J	LTR/ERVL-MaLR	(197)	315	110	2306268
871	24.5	14.7	0.6	chr20	32005005	32005353	(32438814)	+	MLT1J	LTR/ERVL-MaLR	1	407	(105)	2307388
220	28.1	10.8	6.4	chr20	32029138	32029321	(32414846)	C	L2a	LINE/L2	(354)	3065	2866	2307445
180	27.4	5.2	6.4	chr20	32155597	32155674	(32288493)	+	UCON71_Crp	Unknown	144	220	(57)	2307798
1141	20.3	10.9	1.8	chr20	33554944	33555269	(30888898)	C	MER57E1	LTR/ERV1	(0)	372	14	2311061
466	20.4	19.1	2.7	chr20	33933562	33933801	(30510366)	+	MLT1H	LTR/ERVL-MaLR	12	321	(228)	2311945
14	13.6	0.0	5.6	chr20	34677094	34677129	(29767038)	+	G-rich	Low_complexity	1	36	(0)	2313590
16	14.4	2.5	2.4	chr20	35742239	35742278	(28701889)	+	(ACACAC)n	Simple_repeat	1	41	(0)	2315915
308	27.4	8.1	0.0	chr20	35906641	35906742	(28537425)	C	MLT1J	LTR/ERVL-MaLR	(250)	262	152	2316368
278	26.9	4.9	0.0	chr20	41693485	41693562	(22750605)	C	LTR91	LTR/ERVL	(45)	154	73	2327924
491	27.1	0.5	10.9	chr20	44574126	44574336	(19869831)	C	HAL1	LINE/L1	(0)	2507	2319	2333827
384	32.1	1.9	4.6	chr20	45995456	45995618	(18448549)	+	L2c	LINE/L2	3251	3424	(2)	2336731
1894	27.8	1.7	7.0	chr20	46938985	46939599	(17504568)	+	MLT1K	LTR/ERVL-MaLR	14	595	(0)	2338821
468	29.1	9.7	1.0	chr20	49541895	49542186	(14901981)	C	L2a	LINE/L2	(174)	3252	2933	2344701
193	25.0	0.0	0.0	chr20	50188449	50188488	(14255679)	C	MIR3	SINE/MIR	(88)	120	81	2346314
612	29.4	10.5	3.2	chr20	50188526	50188834	(14255333)	C	L2b	LINE/L2	(1)	3374	3041	2346321
27	7.9	2.5	0.0	chr20	50818433	50818472	(13625695)	+	(CT)n	Simple_repeat	1	41	(0)	2347820
635	27.8	6.0	7.9	chr20	53610070	53610460	(10833707)	+	L1ME4c	LINE/L1	272	654	(176)	2353853
735	22.0	7.0	0.6	chr20	53623804	53624019	(10820148)	C	MIR	SINE/MIR	(0)	262	33	2353884
25	13.7	0.0	0.0	chr20	53940209	53940248	(10503919)	+	(A)n	Simple_repeat	1	40	(0)	2354718
387	32.0	10.5	6.3	chr20	57248408	57248771	(7195396)	+	MLT1L	LTR/ERVL-MaLR	212	592	(18)	2360835
22	3.9	0.0	0.0	chr20	58893063	58893089	(5551078)	+	(T)n	Simple_repeat	1	27	(0)	2363593
306	25.9	6.9	2.2	chr20	58912633	58912770	(5531397)	C	MamRep1879	DNA/hAT-Tip100?	(64)	152	8	2363607
2407	16.6	2.4	0.7	chr21	17473780	17474198	(29235785)	+	MSTB	LTR/ERVL-MaLR	1	426	(0)	2381679
201	35.9	2.3	9.2	chr21	33010662	33010882	(13699101)	+	L2	LINE/L2	2488	2690	(729)	2404157
2641	9.9	1.3	1.0	chr21	33010883	33011271	(13698712)	C	MLT1B	LTR/ERVL-MaLR	(0)	390	1	2404158
1983	14.8	0.0	2.2	chr21	36210226	36210364	(10499619)	+	AluSx1	SINE/Alu	1	138	(174)	2409373
584	26.6	7.0	6.1	chr21	36595719	36595946	(10114037)	+	MLT1J	LTR/ERVL-MaLR	231	460	(52)	2410168
1466	20.4	18.0	1.5	chr21	37270542	37271013	(9438970)	C	MLT1F1	LTR/ERVL-MaLR	(1)	568	2	2411271
1061	16.5	1.0	0.5	chr21	37334531	37334638	(9375345)	C	L1MD	LINE/L1	(2403)	5592	5484	2411403
1976	14.5	13.1	7.0	chr21	37334639	37334877	(9375106)	C	MSTA	LTR/ERVL-MaLR	(0)	428	174	2411404
1805	12.8	1.1	0.0	chr21	39349731	39349988	(7359995)	C	AluJb	SINE/Alu	(22)	290	30	2414412
492	25.5	12.7	0.5	chr21	39388339	39388539	(7321444)	C	L1MC4	LINE/L1	(283)	7759	7531	2414501
192	30.4	11.3	1.0	chr21	43758305	43758407	(2951576)	C	L2	LINE/L2	(1878)	1541	1427	2420754
256	30.5	9.1	4.5	chr22	26503238	26503457	(24315011)	+	L2a	LINE/L2	3026	3256	(170)	2444460
3216	10.7	1.8	0.0	chr22	27933099	27933548	(22884920)	C	LTR71A	LTR/ERV1	(0)	459	2	2447751
390	24.0	1.5	4.4	chr22	28772424	28772573	(22045895)	C	MIR	SINE/MIR	(54)	208	74	2449169
1247	13.3	4.1	1.4	chr22	29080704	29080916	(21737552)	+	MER20	DNA/hAT-Charlie	1	219	(0)	2449845
13	14.0	0.0	5.7	chr22	29306273	29306307	(21512161)	+	(GCCCA)n	Simple_repeat	1	35	(0)	2450301
2313	11.0	0.0	0.0	chr22	31116577	31116876	(19701592)	+	AluSx1	SINE/Alu	1	300	(12)	2454056
386	32.9	10.9	4.0	chr22	31116877	31117245	(19701223)	C	MLT1K	LTR/ERVL-MaLR	(96)	514	111	2454052
1010	29.7	10.0	1.1	chr22	35834377	35834915	(14983553)	C	L2a	LINE/L2	(34)	3392	2790	2463820
605	22.3	1.3	3.7	chr22	35900695	35900857	(14917611)	+	MER5A1	DNA/hAT-Charlie	4	162	(4)	2463939
720	29.5	8.8	0.9	chr22	35901019	35901247	(14917221)	C	MIRb	SINE/MIR	(9)	259	11	2463940
17	16.7	0.0	0.0	chr22	38682063	38682096	(12136372)	+	GA-rich	Low_complexity	1	34	(0)	2470102
13	14.7	3.3	0.0	chr22	39520440	39520469	(11297999)	+	G-rich	Low_complexity	1	31	(0)	2471815
204	30.6	1.8	4.4	chr22	41845930	41846042	(8972426)	C	L2c	LINE/L2	(243)	3144	3035	2476908
2521	16.5	1.4	5.0	chr22	42178834	42179330	(8639138)	+	L1MB7	LINE/L1	5271	5755	(429)	2477532
2261	9.8	3.5	1.6	chr22	42421169	42421474	(8396994)	+	AluSq2	SINE/Alu	1	312	(1)	2478016
409	25.8	10.0	8.6	chr22	42649681	42650045	(8168423)	+	L2a	LINE/L2	2986	3411	(15)	2478572
19	25.6	2.0	0.0	chr22	45553979	45554027	(5264441)	+	(GT)n	Simple_repeat	1	50	(0)	2484159
212	34.1	9.6	0.6	chr22	46798601	46798780	(4019688)	C	L2b	LINE/L2	(20)	3355	3158	2486081
16	0.0	0.0	0.0	chr22	50391949	50391965	(426503)	+	(A)n	Simple_repeat	1	17	(0)	2490605
226	26.1	4.2	0.0	chr3	11321447	11321515	(186974044)	C	MIRb	SINE/MIR	(62)	206	135	2511240
12	20.1	5.0	0.0	chr3	11498701	11498740	(186796819)	+	(CTCTTTC)n	Simple_repeat	1	42	(0)	2511562
19	11.6	0.0	0.0	chr3	11642023	11642050	(186653509)	+	(A)n	Simple_repeat	1	28	(0)	2511781
564	27.5	1.4	5.1	chr3	11662634	11662848	(186632711)	+	MLT1L	LTR/ERVL-MaLR	196	402	(208)	2511814
365	22.8	2.5	0.0	chr3	13891826	13891904	(184403655)	+	MLT1J	LTR/ERVL-MaLR	99	179	(333)	2516108
16	10.8	3.3	0.0	chr3	14948240	14948269	(183347290)	+	(CTC)n	Simple_repeat	1	31	(0)	2517905
110	16.8	5.7	1.1	chr3	19934289	19934551	(178361008)	+	(TC)n	Simple_repeat	1	278	(0)	2525330
742	23.7	9.1	4.5	chr3	23095427	23095846	(175199713)	C	Charlie4a	DNA/hAT-Charlie	(64)	444	4	2529641
203	30.3	10.3	9.6	chr3	23761484	23761618	(174533941)	C	MIR3	SINE/MIR	(60)	148	13	2530712
232	27.5	10.3	4.4	chr3	42803364	42803500	(155492059)	C	MER5A	DNA/hAT-Charlie	(9)	180	35	2559686
14	19.1	0.0	2.6	chr3	45388444	45388481	(152907078)	+	(GCCCC)n	Simple_repeat	1	38	(0)	2563751
1105	31.5	4.2	5.9	chr3	61063940	61064552	(137231007)	+	MLT1L	LTR/ERVL-MaLR	1	602	(8)	2589949
550	28.3	10.2	8.8	chr3	65811398	65811850	(132483709)	+	MLT1O	LTR/ERVL-MaLR	34	493	(49)	2598061
11232	8.5	0.4	1.7	chr3	78766413	78767271	(119528288)	C	L1PBa	LINE/L1	(1790)	5072	4227	2618577
399	30.9	10.8	2.2	chr3	123734508	123734931	(74560628)	+	L2b	LINE/L2	2736	3195	(180)	2674210
14138	15.9	3.5	4.9	chr3	128857767	128859679	(69435880)	C	HERV3-int	LTR/ERV1	(6538)	1888	2	2682563
2833	13.0	5.8	1.5	chr3	128859680	128860156	(69435403)	C	LTR4	LTR/ERV1	(0)	596	98	2682563
320	23.1	14.9	1.1	chr3	169262297	169262388	(29033171)	+	L2b	LINE/L2	3060	3166	(209)	2741129
751	24.2	10.7	3.7	chr3	196838022	196838291	(1457268)	C	LTR86A2	LTR/ERVL	(161)	347	57	2785859
585	24.2	22.5	11.7	chr4	40924343	40924848	(149289707)	+	MLT1G1	LTR/ERVL-MaLR	3	579	(0)	2853122
10981	19.2	2.7	6.3	chr4	87243442	87244060	(102970495)	+	L1MB7	LINE/L1	1681	2319	(5198)	2915150
1449	21.1	10.9	1.6	chr4	89158538	89158985	(101055570)	+	Charlie4a	DNA/hAT-Charlie	14	508	(0)	2918219
321	31.6	10.8	5.7	chr4	94827844	94828071	(95386484)	+	MIRc	SINE/MIR	1	241	(27)	2925618
430	29.1	4.6	0.4	chr4	110412311	110412541	(79802014)	C	L1MEh	LINE/L1	(1235)	1000	760	2946569
465	26.9	3.3	1.4	chr4	142551118	142551264	(47663291)	+	MLT1K	LTR/ERVL-MaLR	1	150	(445)	2989100
298	27.4	17.1	2.4	chr5	576006	576218	(180962041)	+	L1M4a1	LINE/L1	970	1220	(1359)	3055532
427	27.6	0.8	0.0	chr5	576225	576340	(180961919)	+	MER4CL34	LTR/ERV1	6	122	(643)	3055533
936	23.3	4.3	1.5	chr5	576337	576606	(180961653)	+	MER4CL34	LTR/ERV1	488	765	(0)	3055533
421	15.2	0.0	0.0	chr5	5523237	5523302	(176014957)	+	MER41C	LTR/ERV1	1	66	(455)	3060644
326	9.5	0.0	0.0	chr5	5523299	5523340	(176014919)	+	MER41C	LTR/ERV1	25	66	(455)	3060644
329	7.0	2.3	0.0	chr5	5523335	5523377	(176014882)	+	MER41C	LTR/ERV1	23	66	(455)	3060644
261	8.3	2.7	0.0	chr5	5523374	5523409	(176014850)	+	MER41C	LTR/ERV1	25	61	(460)	3060644
64	23.8	2.3	4.1	chr5	13991446	13991660	(167546599)	+	GA-rich	Low_complexity	1	220	(0)	3071586
661	30.7	1.5	11.5	chr5	14110811	14111115	(167427144)	+	MLT1J	LTR/ERVL-MaLR	156	429	(83)	3071796
769	29.1	3.0	0.0	chr5	14132220	14132446	(167405813)	+	LTR33	LTR/ERVL	1	234	(281)	3071840
13	24.6	2.3	0.0	chr5	17344030	17344072	(164194187)	+	(GTGTCT)n	Simple_repeat	1	44	(0)	3076674
1200	25.8	3.4	2.5	chr5	29119214	29119647	(152418612)	C	L1MD	LINE/L1	(1997)	4149	3712	3091979
324	31.4	3.7	1.9	chr5	36587385	36587491	(144950768)	C	L2b	LINE/L2	(1)	3374	3266	3103044
856	26.6	10.6	6.6	chr5	36587518	36587958	(144950301)	+	MLT1G3	LTR/ERVL-MaLR	109	569	(10)	3103045
203	30.5	8.5	0.8	chr5	36739735	36739853	(144798406)	C	L2c	LINE/L2	(85)	3302	3174	3103270
255	30.9	0.0	0.0	chr5	36739925	36739992	(144798267)	C	Plat_L3	LINE/CR1	(244)	3342	3275	3103271
18	27.2	4.9	1.2	chr5	36876605	36876685	(144661574)	+	(CGG)n	Simple_repeat	1	85	(0)	3103485
14	13.2	2.9	2.8	chr5	36876818	36876852	(144661407)	+	(CTCC)n	Simple_repeat	1	36	(0)	3103486
247	32.1	9.4	9.1	chr5	38535242	38535394	(143002865)	+	L2c	LINE/L2	3079	3222	(165)	3106252
3975	13.1	2.3	2.5	chr5	38660105	38660746	(142877513)	+	LTR9D	LTR/ERV1	5	645	(0)	3106453
14432	14.2	2.0	3.8	chr5	43571513	43574022	(137964237)	C	LTR49-int	LTR/ERV1	(87)	6244	3774	3113279
12	14.6	0.0	5.9	chr5	55308084	55308117	(126230142)	+	A-rich	Low_complexity	1	34	(0)	3123045
516	32.7	9.9	4.3	chr5	59107747	59108145	(122430114)	+	MLT1H	LTR/ERVL-MaLR	125	548	(1)	3129060
344	28.2	7.2	6.7	chr5	66436749	66436942	(115101317)	+	LTR33A	LTR/ERVL	1	195	(308)	3139436
837	22.4	7.7	0.0	chr5	73914175	73914379	(107623880)	C	MIR	SINE/MIR	(37)	225	4	3151223
572	30.4	1.2	1.2	chr5	83197384	83197553	(98340706)	+	UCON1	Unknown	67	236	(1150)	3165636
739	31.6	10.3	1.8	chr5	84290013	84290411	(97247848)	+	LTR16	LTR/ERVL	1	437	(1)	3167047
1521	25.0	7.7	5.3	chr5	116948068	116948637	(64589622)	C	L1MCc	LINE/L1	(5817)	606	22	3208918
196	22.9	2.0	0.0	chr5	140700414	140700461	(40837798)	C	MamRTE1	LINE/RTE-BovB	(3740)	72	24	3243091
511	16.2	2.9	1.0	chr5	140719047	140719146	(40819113)	+	L1MD3	LINE/L1	6787	6888	(1107)	3243135
201	30.4	0.0	0.0	chr5	141702146	141702201	(39836058)	+	MIRc	SINE/MIR	109	164	(104)	3244438
2048	19.8	11.5	3.4	chr5	142017884	142018384	(39519875)	+	MLT1F	LTR/ERVL-MaLR	1	547	(1)	3245058
784	30.1	8.7	1.8	chr5	143122925	143123043	(38415216)	+	L2a	LINE/L2	3232	3349	(77)	3247203
735	23.2	0.7	0.0	chr5	143123078	143123219	(38415040)	+	MLT1F	LTR/ERVL-MaLR	1	143	(405)	3247205
754	18.8	9.9	1.3	chr5	154180375	154180530	(27357729)	C	MER5B	DNA/hAT-Charlie	(0)	178	8	3266592
217	30.4	5.6	1.9	chr5	176845362	176845465	(4692794)	+	L2b	LINE/L2	3012	3119	(256)	3306104
524	30.6	9.7	4.3	chr5	176845627	176846010	(4692249)	C	L2b	LINE/L2	(54)	3372	2924	3306105
310	31.1	15.0	0.9	chr5	176934841	176935051	(4603208)	+	MLT1K	LTR/ERVL-MaLR	340	585	(10)	3306242
334	31.7	1.9	0.0	chr6	5030818	5030921	(165775058)	+	MER3	DNA/hAT-Charlie	1	106	(103)	3321390
365	27.7	4.9	3.4	chr6	7635062	7635273	(163170706)	C	MLT1L	LTR/ERVL-MaLR	(27)	583	346	3325493
463	30.1	4.9	2.3	chr6	13006695	13006871	(157799108)	C	MLT1I	LTR/ERVL-MaLR	(2)	409	228	3333560
355	20.3	1.4	0.0	chr6	13006929	13006997	(157798982)	C	MLT1I	LTR/ERVL-MaLR	(337)	74	5	3333560
1065	28.0	7.6	7.9	chr6	13763910	13764462	(157041517)	+	MLT1H1	LTR/ERVL-MaLR	7	555	(0)	3334854
630	27.4	11.3	4.9	chr6	13913744	13914195	(156891784)	+	MLT1L	LTR/ERVL-MaLR	122	606	(4)	3335149
935	22.0	15.4	2.7	chr6	15754017	15754569	(155051410)	C	MLT2F	LTR/ERVL	(0)	663	3	3338386
4447	16.9	2.5	1.8	chr6	18242383	18243110	(152562869)	+	MER44C	DNA/TcMar-Tigger	1	733	(0)	3342698
438	32.2	6.7	11.8	chr6	20516618	20516818	(150289161)	+	MLT1K	LTR/ERVL-MaLR	160	358	(237)	3346194
831	24.7	12.3	8.5	chr6	20516916	20517420	(150288559)	C	MER34B	LTR/ERV1	(0)	565	39	3346197
644	27.3	11.8	4.7	chr6	24743450	24743787	(146062192)	C	MLT1L	LTR/ERVL-MaLR	(125)	485	121	3352455
1499	16.9	8.9	0.5	chr6	27078759	27079066	(143726913)	+	MER61B	LTR/ERV1	1	427	(0)	3356253
2218	25.6	10.7	2.7	chr6	27565658	27566630	(143239349)	C	FordPrefect	DNA/hAT-Tip100	(464)	1219	4	3357125
3001	21.0	2.4	2.1	chr6	28712061	28712578	(142093401)	+	FordPrefect	DNA/hAT-Tip100	1098	1620	(63)	3359067
636	2.8	0.0	0.0	chr6	28941601	28941672	(141864307)	C	tRNA-Gln-CAG	tRNA	(3)	72	1	3359511
619	28.1	8.7	2.1	chr6	31637886	31638121	(139167858)	C	MLT1H1	LTR/ERVL-MaLR	(49)	506	254	3363655
16	23.5	0.0	0.0	chr6	32970868	32970899	(137835080)	+	G-rich	Low_complexity	1	32	(0)	3365687
30	0.0	0.0	0.0	chr6	33789334	33789362	(137016617)	+	(TTTTG)n	Simple_repeat	1	29	(0)	3367133
244	26.8	2.7	0.0	chr6	35742754	35742824	(135063155)	+	L2	LINE/L2	2393	2465	(954)	3371044
299	33.2	11.0	2.3	chr6	36341173	36341309	(134464670)	C	MIRb	SINE/MIR	(13)	255	106	3372285
263	32.5	8.8	6.7	chr6	43804852	43805164	(127000815)	+	L2c	LINE/L2	3068	3387	(0)	3386041
233	31.6	3.8	1.3	chr6	45738298	45738374	(125067605)	+	MamTip2	DNA/hAT-Tip100	21	99	(206)	3389083
17	8.3	3.9	0.0	chr6	49541596	49541621	(121264358)	+	(GA)n	Simple_repeat	1	27	(0)	3394522
228	31.7	10.5	0.0	chr6	52332221	52332450	(118473529)	C	L2c	LINE/L2	(1230)	2189	1933	3398364
263	34.9	8.8	1.2	chr6	52517702	52517869	(118288110)	C	MamSINE1	SINE/tRNA-RTE	(70)	220	39	3398640
5297	11.4	2.5	0.4	chr6	53823502	53824603	(116981376)	C	L1PREC2	LINE/L1	(0)	6160	5038	3400788
1840	18.8	17.9	0.2	chr6	56760900	56761364	(114044615)	+	MLT1F1	LTR/ERVL-MaLR	1	565	(4)	3404571
16	16.9	0.0	0.0	chr6	107820380	107820413	(62985566)	+	(GTGTGC)n	Simple_repeat	1	34	(0)	3469433
1652	25.9	13.7	2.9	chr6	110538236	110538895	(60267084)	C	LTR41	LTR/ERVL	(25)	743	1	3473816
2499	6.5	0.0	0.3	chr6	110981555	110981863	(59824116)	C	AluSx1	SINE/Alu	(4)	308	1	3474772
828	26.2	15.2	1.4	chr6	111957495	111957839	(58848140)	C	MER20B	DNA/hAT-Charlie	(352)	431	31	3476434
381	25.0	9.8	4.5	chr6	111957857	111958078	(58847901)	C	L2	LINE/L2	(2976)	443	209	3476430
388	28.7	4.8	2.2	chr6	119529449	119529590	(51276389)	C	MamGypLTR1c	LTR/Gypsy	(353)	460	315	3486699
218	25.2	14.4	3.8	chr6	125811951	125812101	(44993878)	+	MIRb	SINE/MIR	29	200	(68)	3494854
198	39.1	11.2	2.3	chr6	125812158	125812458	(44993521)	+	L2b	LINE/L2	2958	3288	(87)	3494855
3639	8.2	2.0	4.9	chr6	125994602	125995155	(44810824)	+	L1PA11	LINE/L1	5637	6174	(0)	3495130
8004	16.2	2.9	1.3	chr6	132393880	132396933	(38409046)	+	L1M2	LINE/L1	1775	4965	(2597)	3503784
1103	31.8	8.5	3.9	chr6	136403523	136404316	(34401663)	+	L4_C_Mam	LINE/RTE-X	1612	2445	(2693)	3509829
194	34.0	0.0	0.0	chr6	138801196	138801248	(32004731)	C	L2a	LINE/L2	(0)	3426	3374	3513576
442	20.6	2.1	1.1	chr6	138801249	138801341	(32004638)	+	MLT1F2	LTR/ERVL-MaLR	1	94	(466)	3513577
574	21.4	3.0	5.8	chr6	138801352	138801469	(32004510)	C	MER58B	DNA/hAT-Charlie	(0)	341	222	3513578
23788	10.5	4.4	2.9	chr6	140895592	140897497	(29908482)	C	MER61-int	LTR/ERV1	(1)	3340	1408	3516606
3041	18.0	6.0	3.7	chr6	140897539	140898219	(29907760)	C	MER61-int	LTR/ERV1	(4518)	699	2	3516606
514	32.4	1.6	1.6	chr6	143746153	143746334	(27059645)	C	MIR3	SINE/MIR	(4)	204	23	3520366
26	29.8	2.3	3.7	chr6	149317406	149317536	(21488443)	+	(GCC)n	Simple_repeat	1	134	(0)	3528245
16	32.6	0.0	0.0	chr6	149317603	149317663	(21488316)	+	G-rich	Low_complexity	1	61	(0)	3528246
28	24.9	2.0	2.9	chr6	149566288	149566388	(21239591)	+	(CCCGC)n	Simple_repeat	1	100	(0)	3528682
279	38.1	3.5	2.0	chr6	155433399	155433596	(15372383)	+	MIR3	SINE/MIR	3	203	(5)	3538125
397	33.8	1.8	1.8	chr6	155433707	155433869	(15372110)	+	MIR3	SINE/MIR	15	177	(31)	3538126
626	22.1	0.6	3.4	chr6	161042057	161042231	(9763748)	C	MLT1E1	LTR/ERVL-MaLR	(386)	268	50	3546142
1127	19.1	3.2	0.0	chr7	7653757	7653965	(151692008)	+	MER20	DNA/hAT-Charlie	4	219	(0)	3571388
15	17.1	0.0	4.7	chr7	8296409	8296451	(151049522)	+	(TTTATTT)n	Simple_repeat	1	43	(0)	3572336
1853	24.4	7.8	0.2	chr7	23594878	23595341	(135750632)	+	MER65-int	LTR/ERV1	4370	4871	(0)	3592693
367	29.8	5.0	0.9	chr7	42110944	42111058	(117234915)	+	MIRb	SINE/MIR	26	145	(123)	3620764
1985	9.3	0.0	6.6	chr7	44100078	44100378	(115245595)	+	AluSz	SINE/Alu	30	310	(2)	3623815
324	35.5	4.6	4.9	chr7	44100379	44100505	(115245468)	C	L1M4	LINE/L1	(1070)	5076	4943	3623811
300	27.5	7.8	5.5	chr7	113421621	113421820	(45924153)	C	MamGypLTR2b	LTR/Gypsy	(134)	788	584	3727105
22	3.9	0.0	0.0	chr7	120950749	120950775	(38395198)	+	(T)n	Simple_repeat	1	27	(0)	3737033
1103	21.2	0.0	0.0	chr7	131015314	131015516	(28330457)	+	MER3	DNA/hAT-Charlie	5	207	(2)	3751975
2134	22.2	7.4	0.8	chr7	131188269	131188771	(28157202)	C	MLT1H	LTR/ERVL-MaLR	(0)	549	11	3752324
735	21.3	13.9	1.7	chr7	135281754	135281930	(24064043)	C	MER58C	DNA/hAT-Charlie	(4)	211	10	3758689
307	33.3	0.9	5.4	chr7	139969490	139969600	(19376373)	+	MamSINE1	SINE/tRNA-RTE	120	225	(65)	3766489
5293	13.9	6.2	1.1	chr7	141736646	141737590	(17608383)	+	Tigger3b	DNA/TcMar-Tigger	234	1230	(1)	3769754
1325	17.7	11.7	9.0	chr8	11807811	11808255	(133330381)	C	MER31B	LTR/ERV1	(0)	661	1	3810189
14	17.3	5.1	0.0	chr8	16779763	16779801	(128358835)	+	A-rich	Low_complexity	1	41	(0)	3817234
909	23.2	29.8	1.2	chr8	17898463	17898962	(127239674)	+	MLT2F	LTR/ERVL	1	658	(5)	3818914
431	31.2	10.1	0.6	chr8	18978960	18979130	(126159506)	+	MIR3	SINE/MIR	18	206	(2)	3820445
16	16.4	0.0	0.0	chr8	28701422	28701455	(116437181)	+	(CGCGCC)n	Simple_repeat	1	34	(0)	3836721
18	0.0	0.0	0.0	chr8	28701618	28701640	(116436996)	+	(GGC)n	Simple_repeat	1	23	(0)	3836722
341	22.8	6.8	5.6	chr8	33426494	33426637	(111711999)	C	LTR81B	LTR/Gypsy	(14)	1139	1040	3844443
2239	8.6	1.4	0.4	chr8	42210161	42210472	(102928164)	C	AluSx3	SINE/Alu	(0)	311	1	3858345
1080	24.1	1.3	2.5	chr8	57210109	57210427	(87928209)	C	MER50	LTR/ERV1	(134)	600	286	3874991
504	30.4	13.7	6.2	chr8	73416462	73416830	(71721806)	+	MLT1O	LTR/ERVL-MaLR	136	536	(6)	3897959
370	34.6	5.4	3.7	chr8	92723879	92724151	(52414485)	+	MLT1K	LTR/ERVL-MaLR	144	421	(174)	3924222
1866	24.4	4.5	2.8	chr8	100580357	100580857	(44557779)	+	MLT1J	LTR/ERVL-MaLR	3	512	(0)	3937027
418	20.2	9.5	5.8	chr8	102393066	102393186	(42745450)	+	L2a	LINE/L2	3301	3426	(0)	3940223
16	18.3	2.2	2.2	chr8	116874055	116874099	(28264537)	+	(CCCGC)n	Simple_repeat	1	46	(0)	3960759
999	27.8	12.8	6.2	chr9	33171117	33171553	(105223164)	C	MLT1G1	LTR/ERVL-MaLR	(0)	579	105	4054868
1514	10.4	0.5	0.0	chr9	71925239	71925430	(66469287)	+	AluSz	SINE/Alu	1	193	(119)	4085524
1772	12.2	0.8	0.0	chr9	127445810	127446047	(10948670)	+	AluSg	SINE/Alu	53	292	(18)	4178226
2190	20.6	11.7	1.0	chr9	129330763	129331248	(9063469)	C	MLT1F	LTR/ERVL-MaLR	(0)	548	4	4182586
2204	9.9	1.3	2.0	chr9	130196458	130196761	(8197956)	+	AluSx1	SINE/Alu	2	303	(9)	4184528
866	27.2	3.5	0.7	chr9	130196885	130197162	(8197555)	C	L1MC4	LINE/L1	(365)	7677	7392	4184529
266	26.7	0.0	0.0	chr9	133180156	133180215	(5214502)	C	ERV24_Prim-int	LTR/ERV1	(5607)	2600	2541	4190198
2127	10.4	0.0	0.0	chr9	133180264	133180562	(5214155)	+	AluSz	SINE/Alu	1	299	(13)	4190200
234	18.5	0.0	3.6	chr9	134217905	134217960	(4176757)	C	MER20B	DNA/hAT-Charlie	(702)	81	28	4191738
369	9.8	0.0	0.0	chrX	990029	990079	(155050816)	+	LTR9	LTR/ERV1	174	224	(388)	4359832
453	2.0	0.0	0.0	chrX	990078	990128	(155050767)	+	LTR9	LTR/ERV1	174	224	(388)	4359832
399	5.9	0.0	0.0	chrX	990127	990177	(155050718)	+	LTR9	LTR/ERV1	174	224	(388)	4359832
1566	17.6	3.8	1.4	chrX	990176	990498	(155050397)	+	LTR9	LTR/ERV1	174	524	(120)	4359833
1676	6.7	0.0	1.8	chrX	2325073	2325234	(153715661)	+	LTR9	LTR/ERV1	66	224	(388)	4362626
364	8.0	0.0	0.0	chrX	2325233	2325282	(153715613)	+	LTR9	LTR/ERV1	174	223	(389)	4362628
416	2.0	0.0	0.0	chrX	2325284	2325332	(153715563)	+	LTR9	LTR/ERV1	176	224	(388)	4362628
422	3.9	0.0	0.0	chrX	2325331	2325381	(153715514)	+	LTR9	LTR/ERV1	174	224	(388)	4362628
2066	18.2	3.4	4.7	chrX	2325380	2325970	(153714925)	+	LTR9	LTR/ERV1	174	728	(0)	4362629
473	20.9	6.5	0.8	chrX	18697155	18697284	(137343611)	C	LTR16C	LTR/ERVL	(0)	489	352	4389999
269	27.9	0.0	0.0	chrX	20139762	20139822	(135901073)	+	L1ME3C	LINE/L1	5998	6058	(65)	4392629
2456	16.1	1.7	6.9	chrX	23945157	23945649	(132095246)	+	MLT1C	LTR/ERVL-MaLR	1	467	(0)	4398450
11	20.6	5.1	0.0	chrX	24150109	24150147	(131890748)	+	(AGGCCGA)n	Simple_repeat	1	41	(0)	4398943
23	20.0	4.2	2.7	chrX	24150334	24150405	(131890490)	+	(GGC)n	Simple_repeat	1	75	(0)	4398944
35	26.4	2.8	3.4	chrX	41333339	41333480	(114707415)	+	(CTCCC)n	Simple_repeat	1	146	(0)	4424165
327	33.0	7.6	7.0	chrX	46978322	46978693	(109062202)	C	L2c	LINE/L2	(129)	3258	2878	4433162
314	26.8	2.4	1.2	chrX	46978776	46978858	(109062037)	+	MIRc	SINE/MIR	64	147	(121)	4433164
13	7.7	7.1	0.0	chrX	47482595	47482622	(108558273)	+	(GTGC)n	Simple_repeat	1	30	(0)	4434261
1539	13.7	1.2	1.1	chrX	48020781	48021052	(108019843)	C	L1MA5	LINE/L1	(1)	6290	6025	4435169
49	0.0	0.0	0.0	chrX	48834780	48834821	(107206074)	+	(CA)n	Simple_repeat	1	42	(0)	4436922
488	27.6	3.8	0.0	chrX	109891168	109891294	(46149601)	+	MER91A	DNA/hAT-Tip100	28	159	(37)	4507524
1223	12.6	6.1	2.3	chrX	111445426	111445644	(44595251)	C	L1PA16	LINE/L1	(1)	6165	5938	4509893
44	15.6	9.1	0.0	chrX	111445802	111445922	(44594973)	+	(TATC)n	Simple_repeat	1	132	(0)	4509894
1093	15.5	5.5	1.9	chrX	118603983	118604193	(37436702)	C	MER20	DNA/hAT-Charlie	(0)	219	1	4519552
911	19.5	4.1	5.0	chrX	119880922	119881142	(36159753)	+	MER20	DNA/hAT-Charlie	1	219	(0)	4522053
1075	28.4	8.1	5.6	chrX	120477555	120478013	(35562882)	+	MLT1L	LTR/ERVL-MaLR	1	528	(82)	4523001
14	23.4	0.0	2.4	chrX	153971840	153971881	(2069014)	+	(GGC)n	Simple_repeat	1	42	(0)	4570996