1073	29.4	13.2	1.9	chr1	110032513	110033236	(138923186)	+	L2c	LINE/L2	2401	3210	(216)	189453
1533	20.1	12.0	3.8	chr1	110033278	110033410	(138923012)	+	MER31A	LTR/ERV1	1	150	(335)	189454
17256	15.9	5.9	0.7	chr1	111019271	111021290	(137935132)	+	L1P4a	LINE/L1	819	2944	(3539)	191021
2597	8.4	5.0	1.9	chr1	144101293	144106919	(104849503)	+	(TGGCTGGCT)n	Simple_repeat	1	5911	(0)	208844
343	26.7	7.8	3.0	chr1	164798534	164798696	(84157726)	+	MIR3	SINE/MIR	20	187	(21)	242644
195	33.3	1.4	0.0	chr1	171709506	171709577	(77246845)	C	L2b	LINE/L2	(4)	3371	3299	253201
241	12.3	11.0	7.1	chr1	200275580	200275649	(48680773)	C	LTR72	LTR/ERV1	(425)	94	22	293911
1177	25.4	11.5	6.1	chr1	210653547	210653741	(38302681)	+	L1ME4b	LINE/L1	689	882	(10)	311473
1987	14.1	1.1	1.1	chr1	224011691	224016553	(24939869)	+	(AATGG)n	Simple_repeat	1	4914	(0)	331634
8039	20.0	4.3	3.5	chr1	232124098	232126501	(16829921)	C	L1MB5	LINE/L1	(1946)	4698	2211	344538
287	22.7	0.0	0.0	chr1	236097161	236097235	(12859187)	C	LTR10A	LTR/ERV1	(357)	252	178	350993
337	20.8	2.0	0.6	chr1	236097248	236097348	(12859074)	C	LTR10A	LTR/ERV1	(357)	252	106	350994
1140	18.7	6.7	0.4	chr1	236097335	236097570	(12858852)	C	LTR10A	LTR/ERV1	(357)	252	1	350994
19443	13.7	4.8	5.6	chr10	71939839	71943821	(61853601)	+	Harlequin-int	LTR/ERV1	1	3949	(2947)	476248
1221	13.1	2.1	9.1	chr10	80680585	80680837	(53116585)	C	L1MC3	LINE/L1	(82)	7703	7469	491604
240	36.2	10.3	1.9	chr10	88442635	88443059	(45354363)	+	L2c	LINE/L2	2139	2603	(816)	502824
23	22.4	0.0	0.0	chr10	124239634	124239709	(9557713)	+	(GT)n	Simple_repeat	1	76	(0)	561561
984	9.4	0.3	0.6	chr10	133685650	133690462	(106960)	+	BSR/Beta	Satellite	1	4799	(0)	572779
288	34.5	4.7	7.9	chr11	92580346	92580675	(42505947)	+	L2c	LINE/L2	3061	3379	(8)	714373
5832	22.3	8.9	5.5	chr11	118741642	118743011	(16343611)	C	ERVL-E-int	LTR/ERVL	(2445)	3222	1793	753460
280	33.6	6.1	0.0	chr12	2255710	2255816	(131019493)	C	L2b	LINE/L2	(6)	3369	3256	781930
1065	28.8	9.0	4.5	chr12	9934850	9935479	(123339830)	C	L2a	LINE/L2	(6)	3420	2758	794504
15	27.9	0.0	0.0	chr13	46119915	46119959	(68244369)	+	G-rich	Low_complexity	1	45	(0)	1033382
308	22.7	26.5	0.0	chr13	46120032	46120203	(68244125)	+	MIRb	SINE/MIR	20	253	(15)	1033383
665	26.3	9.1	0.0	chr13	65523143	65523332	(48840996)	+	Tigger17c	DNA/TcMar-Tigger	2	210	(978)	1059913
331	32.9	3.1	2.5	chr13	65523359	65523520	(48840808)	+	MIRb	SINE/MIR	4	166	(102)	1059914
234	21.5	12.2	3.0	chr13	65523569	65523635	(48840693)	+	Tigger17	DNA/TcMar-Tigger	2578	2651	(22)	1059915
2150	17.6	4.2	3.1	chr13	67883557	67883977	(46480351)	+	MSTB	LTR/ERVL-MaLR	1	426	(0)	1062828
282	38.9	2.2	1.5	chr13	70682175	70682307	(43682021)	+	MIR	SINE/MIR	21	154	(108)	1066457
752	20.0	0.0	0.0	chr14	34566789	34566908	(72476810)	+	FLAM_A	SINE/Alu	1	120	(22)	1148109
1649	12.1	0.0	0.5	chr14	34566941	34567164	(72476554)	+	AluSx	SINE/Alu	1	223	(89)	1148110
2492	10.9	3.9	0.0	chr15	86285338	86285687	(15705502)	+	THE1B	LTR/ERVL-MaLR	1	364	(0)	1369199
5514	11.3	2.1	2.1	chr15	94831477	94832313	(7158876)	+	LTR1A2	LTR/ERV1	1	837	(0)	1383578
2357	5.0	5.4	2.5	chr16	33335927	33340033	(56998312)	+	(TGGCTTGGC)n	Simple_repeat	1	4327	(0)	1462585
888	6.7	4.2	0.7	chr16	33340034	33340155	(56998190)	C	LTR13A	LTR/ERVK	(840)	126	1	1462584
1182	30.7	5.8	4.5	chr16	53810680	53811262	(36527083)	C	MLT1K	LTR/ERVL-MaLR	(0)	595	5	1478475
308	26.9	1.1	1.1	chr17	9581994	9582087	(73675354)	+	MLT1N2	LTR/ERVL-MaLR	463	556	(6)	1562983
14076	21.5	0.2	0.1	chr17	26831999	26860262	(56397179)	+	(TGGAA)n	Simple_repeat	1	28282	(0)	1585972
3988	18.3	1.0	0.9	chr17	26860263	26876740	(56380701)	+	(GAATG)n	Satellite	1	16640	(0)	1585973
1160	16.0	0.5	0.1	chr17	26880357	26885980	(56371461)	C	ALR/Alpha	Satellite/centr	(26)	5644	1	1585983
301	21.1	8.8	11.9	chr17	43232365	43232482	(40024959)	+	MER96B	DNA/hAT-Tip100	1	114	(303)	1617360
2018	19.7	0.5	1.4	chr17	43232486	43232908	(40024533)	+	LTR13	LTR/ERVK	1	419	(588)	1617361
594	32.0	8.5	0.0	chr17	67612353	67612577	(15644864)	C	MIRc	SINE/MIR	(5)	263	18	1662386
1488	8.6	0.4	1.4	chr17	82359381	82361609	(895832)	+	(CCTCAGTTTC)n	Simple_repeat	1	2238	(0)	1687525
1041	10.8	0.2	0.6	chr18	105674	111670	(80261615)	C	BSR/Beta	Satellite	(42)	5974	1	1689201
28122	17.0	7.8	7.8	chr18	52790112	52792754	(27580531)	C	HUERS-P3b-int	LTR/ERV1	(7)	2901	90	1758952
78	6.2	1.0	0.9	chr18	52792755	52792858	(27580427)	+	(ATTCC)n	Simple_repeat	1	105	(0)	1758954
28122	17.0	7.8	7.8	chr18	52792859	52792933	(27580352)	C	HUERS-P3b-int	LTR/ERV1	(7329)	89	25	1758952
1031	26.8	13.8	2.2	chr18	79200300	79200694	(1172591)	+	L1MEf	LINE/L1	2654	3070	(3249)	1795300
60	16.9	7.8	6.3	chr19	2204083	2204376	(56413240)	+	(GTGCTGT)n	Simple_repeat	1	317	(0)	1800348
1192	10.6	0.3	0.0	chr19	44456469	44457877	(14159739)	C	ACRO1	Satellite/acro	(55)	1412	1	1878760
13441	20.8	5.1	0.9	chr2	26219492	26221988	(215971541)	+	ERVL-E-int	LTR/ERVL	1236	3849	(1818)	1949554
385	3.9	0.0	0.0	chr2	32916230	32916625	(209276904)	+	(G)n	Simple_repeat	1	396	(0)	1961189
5477	16.8	1.8	1.7	chr2	89811301	89833976	(152359553)	+	(ATTCC)n	Simple_repeat	1	23074	(0)	2047609
2211	13.1	1.9	2.1	chr2	89835277	89841184	(152352345)	+	(TGGAA)n	Simple_repeat	1	6021	(0)	2047610
1631	17.4	2.5	0.7	chr2	107092613	107092736	(135100793)	C	AluJr	SINE/Alu	(186)	126	1	2067413
341	34.5	13.4	2.4	chr2	140493009	140493305	(101700224)	C	L3b	LINE/CR1	(134)	5098	4764	2116179
804	25.0	5.9	1.9	chr2	161280161	161280465	(80913064)	C	MER21B	LTR/ERVL	(132)	799	484	2144207
849	18.7	7.8	0.0	chr2	161280449	161280614	(80912915)	C	MER21B	LTR/ERVL	(489)	379	200	2144207
16310	15.4	3.8	2.2	chr2	184880939	184885561	(57307968)	+	L1PA15	LINE/L1	1684	6393	(299)	2177090
446	27.6	4.9	1.9	chr2	199255304	199255462	(42938067)	+	LTR33	LTR/ERVL	1	164	(351)	2196589
276	27.5	14.5	0.0	chr2	199255540	199255710	(42937819)	+	LTR33	LTR/ERVL	316	515	(0)	2196589
365	31.2	1.6	4.6	chr2	219259935	219260129	(22933400)	+	L2-3_Crp	LINE/L2	774	962	(1134)	2227602
4748	24.9	9.6	8.0	chr2	232250257	232252017	(9941512)	+	HAL1	LINE/L1	4	1796	(711)	2248407
5387	18.9	1.4	1.3	chr21	7915871	7944657	(38765326)	+	(ATTCCATTCC)n	Simple_repeat	1	29177	(0)	2373120
312	38.2	6.5	3.6	chr21	8419786	8420171	(38289812)	C	HAL1	LINE/L1	(1230)	1277	880	2373573
248	25.0	0.5	0.3	chr21	8420172	8420439	(38289544)	+	(TCTC)n	Simple_repeat	1	268	(0)	2373574
46	2.3	0.0	0.0	chr21	8420440	8420483	(38289500)	+	(GT)n	Simple_repeat	1	44	(0)	2373575
248	25.0	0.5	0.3	chr21	8420484	8420826	(38289157)	+	(TCTC)n	Simple_repeat	1	344	(0)	2373576
27358	0.2	1.1	0.8	chr21	8442037	8446211	(38263772)	+	LSU-rRNA_Hsa	rRNA	878	5035	(0)	2373624
1644	21.1	0.0	0.0	chr21	8451875	8452163	(38257820)	+	AluSz	SINE/Alu	1	289	(23)	2373651
529	18.9	6.8	3.1	chr21	8452179	8452305	(38257678)	+	AluJb	SINE/Alu	130	261	(51)	2373652
819	26.5	0.0	6.3	chr21	8453826	8454095	(38255888)	+	L1PREC2	LINE/L1	5900	6152	(8)	2373663
51	4.3	4.2	0.0	chr21	8454102	8454172	(38255811)	+	(GA)n	Simple_repeat	1	74	(0)	2373664
560	22.7	0.5	0.2	chr21	8465065	8465409	(38244574)	+	(CTCT)n	Simple_repeat	2	347	(0)	2373688
404	15.6	1.5	0.0	chr21	9247151	9247214	(37462769)	+	AluYj4	SINE/Alu	224	288	(23)	2374339
74	12.3	0.0	0.0	chr21	9247783	9247915	(37462068)	+	(TGGAA)n	Simple_repeat	1	133	(0)	2374340
1996	29.3	5.0	5.8	chr21	9819321	9820600	(36889383)	C	SST1	Satellite/centr	(11)	1552	284	2374899
3733	5.1	0.8	0.0	chr21	10269869	10270342	(36439641)	+	HSATI	Satellite	90	567	(10)	2375347
1732	14.4	0.0	5.1	chr21	10270343	10270634	(36439349)	+	AluSc8	SINE/Alu	13	289	(22)	2375348
5929	13.6	4.5	2.0	chr21	10363290	10364171	(36345812)	C	L1MA2	LINE/L1	(1820)	4326	3409	2375401
1081	7.7	0.8	0.0	chr22	11572347	11572523	(39245945)	+	BSR/Beta	Satellite	1	178	(0)	2425188
2301	14.0	7.0	0.5	chr22	11897054	11897465	(38921003)	C	MER61C	LTR/ERV1	(0)	428	4	2425508
1132	13.2	0.2	0.1	chr22	12175974	12177529	(38640939)	+	ACRO1	Satellite/acro	1	1558	(0)	2425786
14189	23.7	2.0	1.3	chr22	16342959	16363362	(34455106)	+	(GGAAT)n	Simple_repeat	1	20423	(0)	2427223
1756	13.1	0.4	5.5	chr22	18892363	18892653	(31925815)	C	AluSc8	SINE/Alu	(23)	288	13	2431166
4397	4.1	0.2	0.0	chr22	18892654	18893219	(31925249)	C	HSATI	Satellite	(10)	567	1	2431167
30	2.1	10.4	0.0	chr22	18893220	18893267	(31925201)	+	(AT)n	Simple_repeat	1	53	(0)	2431168
2471	27.2	12.4	4.0	chr3	127853936	127855189	(70440370)	+	HAL1	LINE/L1	125	1498	(1009)	2680802
520	22.8	17.2	1.0	chr3	156316516	156316719	(41978840)	C	LTR33	LTR/ERVL	(8)	507	264	2723849
450	23.7	1.5	0.8	chr3	156316809	156316940	(41978619)	C	LTR33	LTR/ERVL	(382)	133	1	2723849
249	28.9	3.2	3.2	chr3	156316950	156317042	(41978517)	+	MIRb	SINE/MIR	168	260	(8)	2723850
8169	13.3	1.8	1.9	chr4	49091249	49112662	(141101893)	+	(CATTC)n	Satellite	1	21808	(0)	2864888
16752	13.3	2.1	2.0	chr4	49110670	49156598	(141057957)	+	(TCCAT)n	Simple_repeat	1	46892	(0)	2864889
3900	19.1	2.5	2.9	chr4	49240045	49241209	(140973346)	C	L1PA16	LINE/L1	(1)	6165	5009	2864991
856	23.7	6.6	0.8	chr4	49313978	49314438	(140900117)	C	MER21B	LTR/ERVL	(132)	799	200	2865114
1095	9.4	0.3	0.6	chr4	190175762	190180287	(34268)	+	BSR/Beta	Satellite	1	4511	(8)	3054651
325	26.1	3.3	0.0	chr5	266955	267042	(181271217)	C	MER3	DNA/hAT-Charlie	(118)	91	1	3055229
2036	15.3	8.6	11.8	chr5	124874026	124874331	(56663928)	+	MER34A	LTR/ERV1	1	280	(291)	3219305
1587	19.6	5.9	5.9	chr5	124874332	124874684	(56663575)	C	MSTB2	LTR/ERVL-MaLR	(2)	455	106	3219306
281	34.7	14.2	1.5	chr5	140943494	140944146	(40594113)	C	L2	LINE/L2	(949)	2470	1722	3243408
1993	15.6	0.3	0.0	chr5	140944183	140944477	(40593782)	C	AluJb	SINE/Alu	(7)	305	10	3243409
3166	26.2	13.6	2.5	chr5	150419481	150420790	(31117469)	+	HAL1	LINE/L1	16	1493	(1014)	3259888
2031	9.2	0.0	8.8	chr5	157280216	157280520	(24257739)	C	AluSq2	SINE/Alu	(32)	281	4	3272428
2555	22.9	9.8	2.6	chr5	157280632	157281522	(24256737)	C	L1MC5	LINE/L1	(18)	9286	8325	3272429
394	27.5	20.9	2.6	chr5	163957256	163957793	(17580466)	C	L1MEd	LINE/L1	(5768)	1318	657	3283323
302	34.4	7.9	3.1	chr5	176834046	176834237	(4704022)	C	L2a	LINE/L2	(9)	3417	3216	3306085
615	26.2	13.0	7.1	chr5	178585739	178586104	(2952155)	+	MLT1L	LTR/ERVL-MaLR	3	393	(217)	3309445
391	33.3	5.5	1.8	chr6	1553337	1553562	(169252417)	+	HERVL-int	LTR/ERVL	5135	5369	(285)	3316318
1781	20.8	9.3	1.5	chr7	6868486	6871227	(152474746)	+	SATR1	Satellite	1	2954	(0)	3570318
59	0.0	0.0	0.0	chr7	35775392	35775441	(123570532)	+	(AC)n	Simple_repeat	1	50	(0)	3611202
347	18.2	0.0	0.0	chr7	57495188	57495242	(101850731)	+	AluYj4	SINE/Alu	225	279	(32)	3642545
367	17.7	3.1	0.0	chr7	57495408	57495469	(101850504)	+	AluYj4	SINE/Alu	226	289	(22)	3642546
94	10.7	1.1	1.1	chr7	57495470	57495644	(101850329)	+	(GGAAT)n	Simple_repeat	1	177	(0)	3642547
26	5.1	6.0	4.2	chr7	58104610	58104676	(101241297)	+	(GATTCCATTC)n	Simple_repeat	1	71	(0)	3643241
2394	10.3	11.7	0.5	chr7	158594718	158595097	(750876)	+	MSTA	LTR/ERVL-MaLR	1	428	(0)	3793407
236	36.4	0.4	0.5	chr7	158595098	158595342	(750631)	+	(GGTGGT)n	Simple_repeat	4	246	(0)	3793408
443	28.8	2.9	0.0	chr7	158607496	158607627	(738346)	+	Charlie1a	DNA/hAT-Charlie	5	140	(1315)	3793429
3059	23.1	8.4	0.7	chr7	158607702	158608002	(737971)	+	Charlie1a	DNA/hAT-Charlie	243	569	(886)	3793430
838	34.1	10.2	4.0	chr8	78414515	78415265	(66723371)	C	L1MEd	LINE/L1	(6236)	850	48	3904665
271	29.4	4.7	3.8	chr8	107745458	107745563	(37393073)	C	MIRc	SINE/MIR	(29)	239	133	3948387
298	35.5	4.6	5.1	chr8	136945094	136945268	(8193368)	C	MIR3	SINE/MIR	(25)	183	10	3996445
1078	14.0	0.2	0.5	chr8	143669231	143669438	(1469198)	C	LTR10B1	LTR/ERV1	(55)	492	240	4006487
253	10.5	0.0	0.0	chr8	143669666	143669703	(1468933)	C	LTR10B1	LTR/ERV1	(509)	38	1	4006487
354	28.1	12.3	3.4	chr9	36669942	36670059	(101724658)	C	MIR3	SINE/MIR	(74)	134	5	4061222
273	26.6	6.6	2.6	chr9	36670077	36670192	(101724525)	+	Tigger16b	DNA/TcMar-Tigger	215	335	(1)	4061223
296	22.0	5.7	2.5	chr9	41229379	41230391	(97164326)	+	(TG)n	Simple_repeat	1	1071	(0)	4068370
2202	13.2	0.3	0.0	chr9	42900022	42900323	(95494394)	+	AluSx3	SINE/Alu	2	304	(7)	4070704
235	23.8	4.5	3.8	chr9	63823016	63823908	(74570809)	+	(CA)n	Simple_repeat	1	933	(0)	4074777
268	8.8	1.9	1.9	chr9	70038166	70038638	(68356079)	+	(TGGAA)n	Simple_repeat	1	482	(0)	4082515
6571	11.9	2.0	0.6	chr9	93734086	93734268	(44660449)	+	L1PA13	LINE/L1	3510	3697	(2449)	4118511
6782	8.9	0.7	2.8	chr9	93734271	93735854	(44658863)	+	L1PA13	LINE/L1	4615	6155	(8)	4118511
849	29.0	2.5	4.8	chr9	101957892	101958304	(36436413)	C	L1MDa	LINE/L1	(6230)	403	1	4132442
4563	14.3	3.5	4.4	chr9	110663228	110663780	(27730937)	C	L1MA8	LINE/L1	(960)	5331	4767	4146617
243	4.6	0.0	2.1	chr9	137355408	137355734	(1038983)	+	(GAGGAAG)n	Simple_repeat	1	327	(0)	4195528
414	33.2	7.4	3.4	chrX	22719457	22719690	(133321205)	C	L4_A_Mam	LINE/RTE-X	(4650)	340	97	4396416
249	31.7	11.1	3.2	chrX	26039617	26039929	(130000966)	C	L3	LINE/CR1	(1961)	2138	1798	4401894
1818	16.4	0.0	0.0	chrX	49345995	49346281	(106694614)	C	AluSx	SINE/Alu	(25)	287	1	4437942
898	16.7	0.0	3.7	chrX	119139332	119139493	(36901402)	+	L1PB4	LINE/L1	5958	6113	(43)	4520514
196	26.3	3.4	0.0	chrX	119139494	119139550	(36901345)	+	MIRb	SINE/MIR	210	268	(0)	4520515
392	8.3	0.0	0.0	chrX	119139666	119139725	(36901170)	+	L1PB4	LINE/L1	6096	6155	(1)	4520516
297	24.6	0.0	0.0	chrY	10627178	10627242	(46600173)	C	AluJo	SINE/Alu	(20)	292	228	4587825
890	21.9	0.8	0.9	chrY	10627274	10627798	(46599617)	+	(CCATT)n	Simple_repeat	3	528	(0)	4587826
6112	24.5	0.6	0.4	chrY	10939178	10940587	(46286828)	+	(TTCCA)n	Simple_repeat	5	1415	(0)	4588487
276	18.9	3.6	0.0	chrY	10994485	10994537	(46232878)	C	AluJo	SINE/Alu	(24)	288	234	4588623
45	0.0	0.0	0.0	chrY	11000012	11000052	(46227363)	+	(TCCAT)n	Simple_repeat	1	41	(0)	4588638
10957	28.2	0.5	0.1	chrY	26653859	26659290	(30568125)	+	(AATGG)n	Simple_repeat	5	5454	(0)	4607165