python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.meme CTCF-201.PFM-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.pattern_0.n_94
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.meme CTCF-201.PFM-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.pattern_0.n_94
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.meme CTCF-202.PFM-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.pattern_0.n_94
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.meme CTCF-213.PFM-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.pattern_0.n_94
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.meme CTCF-207.PFM-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.pattern_0.n_94
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.profile.pattern_0.n_94.meme CTCF-211.PFM-vs-CTCF-HEK293-Hughes_NB_models_CTCF.bestfold.pattern_0.n_94
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.meme CTCF-201.PFM-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.pattern_0.n_1810
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.meme CTCF-201.PFM-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.pattern_0.n_1810
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.meme CTCF-202.PFM-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.pattern_0.n_1810
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-213/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.meme CTCF-213.PFM-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.pattern_0.n_1810
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-207/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.meme CTCF-207.PFM-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.pattern_0.n_1810
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/CTCF-211/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.profile.pattern_0.n_1810.meme CTCF-211.PFM-vs-CTCF-HEK294-Hughes_GR_models_CTCF.bestfold.pattern_0.n_1810
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/EGR2-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.profile.pattern_0.n_1890.meme EGR2-201.PFM-vs-EGR2-HEK295-Hughes_GR_models_EGR2.bestfold.pattern_0.n_1890
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/FEZF1-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.profile.pattern_0.n_1991.meme FEZF1-202.PFM-vs-FEZF1-HEK297-Hughes_GR_models_FEZF1.bestfold.pattern_0.n_1991
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLI4-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.profile.pattern_0.n_68.meme GLI4-201.PFM-vs-GLI4-HEK298-Hughes_GR_models_GLI4.bestfold.pattern_0.n_68
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/GLIS1-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.profile.pattern_0.n_2165.meme GLIS1-201.PFM-vs-GLIS1-HEK299-Hughes_GR_models_GLIS1.bestfold.pattern_0.n_2165
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.meme IKZF3-201.PFM-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.pattern_0.n_592
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.meme IKZF3-203.PFM-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.pattern_0.n_592
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.meme IKZF3-204.PFM-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.pattern_0.n_592
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF3-207/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.meme IKZF3-207.PFM-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.pattern_0.n_592
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF4-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.meme IKZF4-201.PFM-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.pattern_0.n_592
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/IKZF5-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.profile.pattern_0.n_592.meme IKZF5-201.PFM-vs-IKZF3-HEK301-Hughes_GR_models_IKZF3.bestfold.pattern_0.n_592
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF1-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.profile.pattern_0.n_914.meme KLF1-201.PFM-vs-KLF1-HEK302-Hughes_GR_models_KLF1.bestfold.pattern_0.n_914
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF10-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.profile.pattern_0.n_48.meme KLF10-201.PFM-vs-KLF10-HEK303-Hughes_NB_models_KLF10.bestfold.pattern_0.n_48
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF12-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.profile.pattern_0.n_617.meme KLF12-201.PFM-vs-KLF12-HEK304-Hughes_GR_models_KLF12.bestfold.pattern_0.n_617
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF14-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.profile.pattern_0.n_544.meme KLF14-201.PFM-vs-KLF14-HEK305-Hughes_NB_models_KLF14.bestfold.pattern_0.n_544
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF15-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.profile.pattern_0.n_727.meme KLF15-201.PFM-vs-KLF15-HEK306-Hughes_GR_models_KLF15.bestfold.pattern_0.n_727
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/KLF7-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.profile.pattern_0.n_40.meme KLF7-201.PFM-vs-KLF7-HEK307-Hughes_GR_models_KLF7.bestfold.pattern_0.n_40
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.meme MAZ-201.PFM-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.pattern_0.n_605
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.meme MAZ-202.PFM-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.pattern_0.n_605
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-205/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.meme MAZ-205.PFM-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.pattern_0.n_605
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-212/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.meme MAZ-212.PFM-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.pattern_0.n_605
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MAZ-216/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.profile.pattern_0.n_605.meme MAZ-216.PFM-vs-MAZ-HEK308-Hughes_GR_models_MAZ.bestfold.pattern_0.n_605
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.meme MYNN-201.PFM-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.pattern_0.n_168
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MYNN-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.profile.pattern_0.n_168.meme MYNN-204.PFM-vs-MYNN-HEK309-Hughes_GR_models_MYNN.bestfold.pattern_0.n_168
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/MZF1-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.profile.pattern_0.n_299.meme MZF1-201.PFM-vs-MZF1-HEK311-Hughes_NB_models_MZF1.bestfold.pattern_0.n_299
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.meme PATZ1-201.PFM-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.pattern_0.n_313
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.meme PATZ1-202.PFM-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.pattern_0.n_313
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.meme PATZ1-203.PFM-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.pattern_0.n_313
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PATZ1-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.profile.pattern_0.n_313.meme PATZ1-204.PFM-vs-PATZ1-HEK312-Hughes_GR_models_PATZ1.bestfold.pattern_0.n_313
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM1-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.profile.pattern_0.n_324.meme PRDM1-201.PFM-vs-PRDM1-HEK313-Hughes_GR_models_PRDM1.bestfold.pattern_0.n_324
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/PRDM9-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.profile.pattern_0.n_124.meme PRDM9-201.PFM-vs-PRDM9-HEK315-ChipExo_models_PRDM9.bestfold.pattern_0.n_124
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/RBAK-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/RBAK-HEK316-ChipExo_models_RBAK.bestfold.profile.pattern_0.n_101.meme RBAK-201.PFM-vs-RBAK-HEK316-ChipExo_models_RBAK.bestfold.pattern_0.n_101
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SCRT1-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.profile.pattern_0.n_1619.meme SCRT1-201.PFM-vs-SCRT1-HEK317-Hughes_GR_models_SCRT1.bestfold.pattern_0.n_1619
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP1-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/SP1-HEK318-Hughes_GR_models_SP1.bestfold.profile.pattern_0.n_867.meme SP1-201.PFM-vs-SP1-HEK318-Hughes_GR_models_SP1.bestfold.pattern_0.n_867
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP2-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/SP2-HEK319-Hughes_GR_models_SP2.bestfold.profile.pattern_0.n_1372.meme SP2-201.PFM-vs-SP2-HEK319-Hughes_GR_models_SP2.bestfold.pattern_0.n_1372
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/SP4-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/SP4-HEK320-Hughes_GR_models_SP4.bestfold.profile.pattern_0.n_1012.meme SP4-201.PFM-vs-SP4-HEK320-Hughes_GR_models_SP4.bestfold.pattern_0.n_1012
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/YY1-HEK321-Hughes_NB_models_YY1.bestfold.profile.pattern_0.n_619.meme YY1-201.PFM-vs-YY1-HEK321-Hughes_NB_models_YY1.bestfold.pattern_0.n_619
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/YY1-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/YY1-HEK322-Hughes_GR_models_YY1.bestfold.profile.pattern_0.n_770.meme YY1-201.PFM-vs-YY1-HEK322-Hughes_GR_models_YY1.bestfold.pattern_0.n_770
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.meme ZBTB10-201.PFM-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.pattern_0.n_3889
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB10-HEK293-ENCSR004PLU.bestfold.profile.pattern_0.n_3889.meme ZBTB10-202.PFM-vs-ZBTB10-HEK293-ENCSR004PLU.bestfold.pattern_0.n_3889
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.meme ZBTB10-201.PFM-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.pattern_0.n_3190
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB10-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB10-HepG2-ENCSR959COF.bestfold.profile.pattern_0.n_3190.meme ZBTB10-202.PFM-vs-ZBTB10-HepG2-ENCSR959COF.bestfold.pattern_0.n_3190
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.meme ZBTB11-201.PFM-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.pattern_0.n_2034
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-GM12878-ENCSR057DTZ.bestfold.profile.pattern_0.n_2034.meme ZBTB11-203.PFM-vs-ZBTB11-GM12878-ENCSR057DTZ.bestfold.pattern_0.n_2034
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.meme ZBTB11-201.PFM-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.pattern_0.n_10044
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-HEK293-ENCSR882ZTS.bestfold.profile.pattern_0.n_10044.meme ZBTB11-203.PFM-vs-ZBTB11-HEK293-ENCSR882ZTS.bestfold.pattern_0.n_10044
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.meme ZBTB11-201.PFM-vs-ZBTB11-K562-ENCSR331GDC.bestfold.pattern_0.n_5790
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-K562-ENCSR331GDC.bestfold.profile.pattern_0.n_5790.meme ZBTB11-203.PFM-vs-ZBTB11-K562-ENCSR331GDC.bestfold.pattern_0.n_5790
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.meme ZBTB11-201.PFM-vs-ZBTB11-K562-ENCSR468DVP.bestfold.pattern_0.n_1588
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-K562-ENCSR468DVP.bestfold.profile.pattern_0.n_1588.meme ZBTB11-203.PFM-vs-ZBTB11-K562-ENCSR468DVP.bestfold.pattern_0.n_1588
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.meme ZBTB11-201.PFM-vs-ZBTB11-K562-ENCSR706BJO.bestfold.pattern_0.n_11790
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-K562-ENCSR706BJO.bestfold.profile.pattern_0.n_11790.meme ZBTB11-203.PFM-vs-ZBTB11-K562-ENCSR706BJO.bestfold.pattern_0.n_11790
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.meme ZBTB11-201.PFM-vs-ZBTB11-K562-ENCSR985OYK.bestfold.pattern_0.n_2671
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-K562-ENCSR985OYK.bestfold.profile.pattern_0.n_2671.meme ZBTB11-203.PFM-vs-ZBTB11-K562-ENCSR985OYK.bestfold.pattern_0.n_2671
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.meme ZBTB11-201.PFM-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.pattern_0.n_1802
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB11-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB11-MCF-7-ENCSR155VDK.bestfold.profile.pattern_0.n_1802.meme ZBTB11-203.PFM-vs-ZBTB11-MCF-7-ENCSR155VDK.bestfold.pattern_0.n_1802
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB17-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB17-HEK293-ENCSR631WAA.bestfold.profile.pattern_0.n_8550.meme ZBTB17-201.PFM-vs-ZBTB17-HEK293-ENCSR631WAA.bestfold.pattern_0.n_8550
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB18-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.profile.pattern_0.n_207.meme ZBTB18-201.PFM-vs-ZBTB18-HEK326-Hughes_GR_models_ZBTB18.bestfold.pattern_0.n_207
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB2-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB2-K562-ENCSR230PTV.bestfold.profile.pattern_0.n_3604.meme ZBTB2-201.PFM-vs-ZBTB2-K562-ENCSR230PTV.bestfold.pattern_0.n_3604
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB20-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB20-HEK293-ENCSR460MBI.bestfold.profile.pattern_0.n_6265.meme ZBTB20-201.PFM-vs-ZBTB20-HEK293-ENCSR460MBI.bestfold.pattern_0.n_6265
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.meme ZBTB21-201.PFM-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.pattern_0.n_3180
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB21-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB21-HepG2-ENCSR549PAU.bestfold.profile.pattern_0.n_3180.meme ZBTB21-204.PFM-vs-ZBTB21-HepG2-ENCSR549PAU.bestfold.pattern_0.n_3180
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB24-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB24-HepG2-ENCSR396XDF.bestfold.profile.pattern_0.n_470.meme ZBTB24-201.PFM-vs-ZBTB24-HepG2-ENCSR396XDF.bestfold.pattern_0.n_470
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB26-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB26-K562-ENCSR115HLM.bestfold.profile.pattern_0.n_1604.meme ZBTB26-201.PFM-vs-ZBTB26-K562-ENCSR115HLM.bestfold.pattern_0.n_1604
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB3-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB3-HepG2-ENCSR481AIK.bestfold.profile.pattern_0.n_1391.meme ZBTB3-201.PFM-vs-ZBTB3-HepG2-ENCSR481AIK.bestfold.pattern_0.n_1391
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB33-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB33-MCF-7-ENCSR231YFE.bestfold.profile.pattern_0.n_6344.meme ZBTB33-201.PFM-vs-ZBTB33-MCF-7-ENCSR231YFE.bestfold.pattern_0.n_6344
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB37-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB37-HepG2-ENCSR775YXE.bestfold.profile.pattern_0.n_2425.meme ZBTB37-201.PFM-vs-ZBTB37-HepG2-ENCSR775YXE.bestfold.pattern_0.n_2425
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB39-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB39-HepG2-ENCSR087NSZ.bestfold.profile.pattern_0.n_1777.meme ZBTB39-201.PFM-vs-ZBTB39-HepG2-ENCSR087NSZ.bestfold.pattern_0.n_1777
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB4-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB4-HepG2-ENCSR479PRL.bestfold.profile.pattern_0.n_3265.meme ZBTB4-201.PFM-vs-ZBTB4-HepG2-ENCSR479PRL.bestfold.pattern_0.n_3265
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB40-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB40-MCF-7-ENCSR318LVG.bestfold.profile.pattern_0.n_6485.meme ZBTB40-201.PFM-vs-ZBTB40-MCF-7-ENCSR318LVG.bestfold.pattern_0.n_6485
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB42-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.profile.pattern_0.n_1028.meme ZBTB42-201.PFM-vs-ZBTB42-HEK328-Hughes_GR_models_ZBTB42.bestfold.pattern_0.n_1028
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB43-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB43-WTC11-ENCSR199PXS.bestfold.profile.pattern_0.n_906.meme ZBTB43-201.PFM-vs-ZBTB43-WTC11-ENCSR199PXS.bestfold.pattern_0.n_906
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.meme ZBTB44-201.PFM-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.pattern_0.n_8944
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.meme ZBTB44-203.PFM-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.pattern_0.n_8944
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB44-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB44-HEK293-ENCSR076STQ.bestfold.profile.pattern_0.n_8944.meme ZBTB44-204.PFM-vs-ZBTB44-HEK293-ENCSR076STQ.bestfold.pattern_0.n_8944
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB46-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB46-HepG2-ENCSR931SYA.bestfold.profile.pattern_0.n_817.meme ZBTB46-201.PFM-vs-ZBTB46-HepG2-ENCSR931SYA.bestfold.pattern_0.n_817
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.meme ZBTB48-202.PFM-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.pattern_0.n_13953
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-206/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.meme ZBTB48-206.PFM-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.pattern_0.n_13953
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB48-208/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB48-HEK293-ENCSR781EQJ.bestfold.profile.pattern_0.n_13953.meme ZBTB48-208.PFM-vs-ZBTB48-HEK293-ENCSR781EQJ.bestfold.pattern_0.n_13953
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.meme ZBTB49-201.PFM-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.pattern_0.n_430
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB49-206/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB49-HepG2-ENCSR803IYP.bestfold.profile.pattern_0.n_430.meme ZBTB49-206.PFM-vs-ZBTB49-HepG2-ENCSR803IYP.bestfold.pattern_0.n_430
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB5-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB5-K562-ENCSR786OQY.bestfold.profile.pattern_0.n_1088.meme ZBTB5-201.PFM-vs-ZBTB5-K562-ENCSR786OQY.bestfold.pattern_0.n_1088
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB6-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB6-HEK293-ENCSR619OUC.bestfold.profile.pattern_0.n_12413.meme ZBTB6-201.PFM-vs-ZBTB6-HEK293-ENCSR619OUC.bestfold.pattern_0.n_12413
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB7B-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB7B-HepG2-ENCSR322ULL.bestfold.profile.pattern_0.n_4806.meme ZBTB7B-201.PFM-vs-ZBTB7B-HepG2-ENCSR322ULL.bestfold.pattern_0.n_4806
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.meme ZBTB8A-201.PFM-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.pattern_0.n_9564
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB8A-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB8A-HEK293-ENCSR481FEC.bestfold.profile.pattern_0.n_9564.meme ZBTB8A-202.PFM-vs-ZBTB8A-HEK293-ENCSR481FEC.bestfold.pattern_0.n_9564
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZBTB9-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZBTB9-K562-ENCSR536CBU.bestfold.profile.pattern_0.n_2870.meme ZBTB9-201.PFM-vs-ZBTB9-K562-ENCSR536CBU.bestfold.pattern_0.n_2870
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP3-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZFP3-SK-N-SH-ENCSR581GUY.bestfold.profile.pattern_0.n_4229.meme ZFP3-201.PFM-vs-ZFP3-SK-N-SH-ENCSR581GUY.bestfold.pattern_0.n_4229
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP41-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZFP41-HepG2-ENCSR731UPJ.bestfold.profile.pattern_0.n_872.meme ZFP41-201.PFM-vs-ZFP41-HepG2-ENCSR731UPJ.bestfold.pattern_0.n_872
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP42-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.profile.pattern_0.n_154.meme ZFP42-201.PFM-vs-ZFP42-HEK334-Hughes_GR_models_ZFP42.bestfold.pattern_0.n_154
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP64-205/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZFP64-HepG2-ENCSR487CPI.bestfold.profile.pattern_0.n_5668.meme ZFP64-205.PFM-vs-ZFP64-HepG2-ENCSR487CPI.bestfold.pattern_0.n_5668
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP69B-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZFP69B-HEK293-ENCSR381VYR.bestfold.profile.pattern_0.n_5721.meme ZFP69B-201.PFM-vs-ZFP69B-HEK293-ENCSR381VYR.bestfold.pattern_0.n_5721
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP82-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZFP82-HepG2-ENCSR196FSX.bestfold.profile.pattern_0.n_1234.meme ZFP82-201.PFM-vs-ZFP82-HepG2-ENCSR196FSX.bestfold.pattern_0.n_1234
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.meme ZFP90-201.PFM-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.pattern_0.n_923
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP90-205/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZFP90-HepG2-ENCSR377GZS.bestfold.profile.pattern_0.n_923.meme ZFP90-205.PFM-vs-ZFP90-HepG2-ENCSR377GZS.bestfold.pattern_0.n_923
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFP91-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZFP91-K562-ENCSR898XMH.bestfold.profile.pattern_0.n_5497.meme ZFP91-201.PFM-vs-ZFP91-K562-ENCSR898XMH.bestfold.pattern_0.n_5497
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZFY-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZFY-HepG2-ENCSR949OEV.bestfold.profile.pattern_0.n_14335.meme ZFY-201.PFM-vs-ZFY-HepG2-ENCSR949OEV.bestfold.pattern_0.n_14335
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIC2-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZIC2-HEK293-ENCSR728MWW.bestfold.profile.pattern_0.n_28879.meme ZIC2-201.PFM-vs-ZIC2-HEK293-ENCSR728MWW.bestfold.pattern_0.n_28879
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZIM3-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.profile.pattern_0.n_1451.meme ZIM3-201.PFM-vs-ZIM3-HEK345-ChipExo_models_ZIM3.bestfold.pattern_0.n_1451
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN1-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZKSCAN1-K562-ENCSR882ERE.bestfold.profile.pattern_0.n_6402.meme ZKSCAN1-201.PFM-vs-ZKSCAN1-K562-ENCSR882ERE.bestfold.pattern_0.n_6402
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN3-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZKSCAN3-K562-ENCSR199HGP.bestfold.profile.pattern_0.n_383.meme ZKSCAN3-201.PFM-vs-ZKSCAN3-K562-ENCSR199HGP.bestfold.pattern_0.n_383
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZKSCAN5-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZKSCAN5-HepG2-ENCSR159BTO.bestfold.profile.pattern_0.n_2543.meme ZKSCAN5-204.PFM-vs-ZKSCAN5-HepG2-ENCSR159BTO.bestfold.pattern_0.n_2543
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF121-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF121-K562-ENCSR799URB.bestfold.profile.pattern_0.n_18117.meme ZNF121-201.PFM-vs-ZNF121-K562-ENCSR799URB.bestfold.pattern_0.n_18117
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.meme ZNF124-201.PFM-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.pattern_0.n_2727
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF124-206/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF124-HepG2-ENCSR357YPP.bestfold.profile.pattern_0.n_2727.meme ZNF124-206.PFM-vs-ZNF124-HepG2-ENCSR357YPP.bestfold.pattern_0.n_2727
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF132-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.profile.pattern_0.n_490.meme ZNF132-201.PFM-vs-ZNF132-HEK356-ChipExo_models_ZNF132.bestfold.pattern_0.n_490
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF133-206/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF133-K562-ENCSR619UPN.bestfold.profile.pattern_0.n_475.meme ZNF133-206.PFM-vs-ZNF133-K562-ENCSR619UPN.bestfold.pattern_0.n_475
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF134-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF134-K562-ENCSR553NTC.bestfold.profile.pattern_0.n_1820.meme ZNF134-201.PFM-vs-ZNF134-K562-ENCSR553NTC.bestfold.pattern_0.n_1820
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF136-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.profile.pattern_0.n_665.meme ZNF136-201.PFM-vs-ZNF136-HEK361-ChipExo_models_ZNF136.bestfold.pattern_0.n_665
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF138-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF138-HEK293-ENCSR551KAP.bestfold.profile.pattern_0.n_1250.meme ZNF138-201.PFM-vs-ZNF138-HEK293-ENCSR551KAP.bestfold.pattern_0.n_1250
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF140-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.meme ZNF140-202.PFM-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.pattern_0.n_41
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF141-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.profile.pattern_0.n_41.meme ZNF141-201.PFM-vs-ZNF141-HEK363-ChipExo_models_ZNF141.bestfold.pattern_0.n_41
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF142-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF142-HepG2-ENCSR512ECF.bestfold.profile.pattern_0.n_1777.meme ZNF142-201.PFM-vs-ZNF142-HepG2-ENCSR512ECF.bestfold.pattern_0.n_1777
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF143-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF143-K562-ENCSR000EGP.bestfold.profile.pattern_0.n_15253.meme ZNF143-201.PFM-vs-ZNF143-K562-ENCSR000EGP.bestfold.pattern_0.n_15253
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF146-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF146-HepG2-ENCSR957LTN.bestfold.profile.pattern_0.n_15464.meme ZNF146-201.PFM-vs-ZNF146-HepG2-ENCSR957LTN.bestfold.pattern_0.n_15464
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF148-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF148-K562-ENCSR018MSO.bestfold.profile.pattern_0.n_11288.meme ZNF148-201.PFM-vs-ZNF148-K562-ENCSR018MSO.bestfold.pattern_0.n_11288
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF155-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF155-HEK293-ENCSR801BWR.bestfold.profile.pattern_0.n_236.meme ZNF155-201.PFM-vs-ZNF155-HEK293-ENCSR801BWR.bestfold.pattern_0.n_236
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF157-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF157-HEK293-ENCSR564YYW.bestfold.profile.pattern_0.n_1764.meme ZNF157-201.PFM-vs-ZNF157-HEK293-ENCSR564YYW.bestfold.pattern_0.n_1764
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF16-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF16-HEK293-ENCSR093HXE.bestfold.profile.pattern_0.n_1393.meme ZNF16-201.PFM-vs-ZNF16-HEK293-ENCSR093HXE.bestfold.pattern_0.n_1393
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF165-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF165-K562-ENCSR172XJS.bestfold.profile.pattern_0.n_505.meme ZNF165-201.PFM-vs-ZNF165-K562-ENCSR172XJS.bestfold.pattern_0.n_505
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF169-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF169-HEK293-ENCSR661AXW.bestfold.profile.pattern_0.n_474.meme ZNF169-202.PFM-vs-ZNF169-HEK293-ENCSR661AXW.bestfold.pattern_0.n_474
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF17-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF17-HepG2-ENCSR075BAS.bestfold.profile.pattern_0.n_279.meme ZNF17-201.PFM-vs-ZNF17-HepG2-ENCSR075BAS.bestfold.pattern_0.n_279
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF174-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF174-K562-ENCSR056VYW.bestfold.profile.pattern_0.n_289.meme ZNF174-201.PFM-vs-ZNF174-K562-ENCSR056VYW.bestfold.pattern_0.n_289
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF175-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF175-K562-ENCSR011PEI.bestfold.profile.pattern_0.n_5220.meme ZNF175-201.PFM-vs-ZNF175-K562-ENCSR011PEI.bestfold.pattern_0.n_5220
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF18-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF18-HEK293-ENCSR977HTH.bestfold.profile.pattern_0.n_9864.meme ZNF18-201.PFM-vs-ZNF18-HEK293-ENCSR977HTH.bestfold.pattern_0.n_9864
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF180-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF180-HepG2-ENCSR298DSB.bestfold.profile.pattern_0.n_236.meme ZNF180-201.PFM-vs-ZNF180-HepG2-ENCSR298DSB.bestfold.pattern_0.n_236
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF181-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF181-HepG2-ENCSR115LFG.bestfold.profile.pattern_0.n_1102.meme ZNF181-201.PFM-vs-ZNF181-HepG2-ENCSR115LFG.bestfold.pattern_0.n_1102
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF182-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF184-HEK293-ENCSR020UPN.bestfold.profile.pattern_0.n_3164.meme ZNF182-201.PFM-vs-ZNF184-HEK293-ENCSR020UPN.bestfold.pattern_0.n_3164
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF184-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF184-K562-ENCSR546IHU.bestfold.profile.pattern_0.n_1680.meme ZNF184-201.PFM-vs-ZNF184-K562-ENCSR546IHU.bestfold.pattern_0.n_1680
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF189-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF189-HEK293-ENCSR163RYW.bestfold.profile.pattern_0.n_13283.meme ZNF189-201.PFM-vs-ZNF189-HEK293-ENCSR163RYW.bestfold.pattern_0.n_13283
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF19-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF19-HEK293-ENCSR811JJM.bestfold.profile.pattern_0.n_679.meme ZNF19-201.PFM-vs-ZNF19-HEK293-ENCSR811JJM.bestfold.pattern_0.n_679
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF197-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF197-K562-ENCSR580IAO.bestfold.profile.pattern_0.n_3565.meme ZNF197-202.PFM-vs-ZNF197-K562-ENCSR580IAO.bestfold.pattern_0.n_3565
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF2-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF2-HEK293-ENCSR011CKE.bestfold.profile.pattern_0.n_6342.meme ZNF2-201.PFM-vs-ZNF2-HEK293-ENCSR011CKE.bestfold.pattern_0.n_6342
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF20-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF20-HepG2-ENCSR720PDY.bestfold.profile.pattern_0.n_237.meme ZNF20-201.PFM-vs-ZNF20-HepG2-ENCSR720PDY.bestfold.pattern_0.n_237
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF200-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.profile.pattern_0.n_52.meme ZNF200-201.PFM-vs-ZNF200-HEK380-Hughes_NB_models_ZNF200.bestfold.pattern_0.n_52
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF205-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF205-HepG2-ENCSR157CEN.bestfold.profile.pattern_0.n_2402.meme ZNF205-201.PFM-vs-ZNF205-HepG2-ENCSR157CEN.bestfold.pattern_0.n_2402
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF211-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF211-HEK293-ENCSR365DQH.bestfold.profile.pattern_0.n_1021.meme ZNF211-201.PFM-vs-ZNF211-HEK293-ENCSR365DQH.bestfold.pattern_0.n_1021
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF212-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF212-K562-ENCSR002ZGC.bestfold.profile.pattern_0.n_515.meme ZNF212-201.PFM-vs-ZNF212-K562-ENCSR002ZGC.bestfold.pattern_0.n_515
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF214-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF214-HEK293-ENCSR993DED.bestfold.profile.pattern_0.n_590.meme ZNF214-201.PFM-vs-ZNF214-HEK293-ENCSR993DED.bestfold.pattern_0.n_590
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF215-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF215-K562-ENCSR699RWG.bestfold.profile.pattern_0.n_2616.meme ZNF215-201.PFM-vs-ZNF215-K562-ENCSR699RWG.bestfold.pattern_0.n_2616
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF217-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF217-HepG2-ENCSR055FQB.bestfold.profile.pattern_0.n_8301.meme ZNF217-201.PFM-vs-ZNF217-HepG2-ENCSR055FQB.bestfold.pattern_0.n_8301
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF22-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.profile.pattern_0.n_469.meme ZNF22-201.PFM-vs-ZNF22-HEK387-Hughes_GR_models_ZNF22.bestfold.pattern_0.n_469
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF223-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF223-HEK293-ENCSR906PCS.bestfold.profile.pattern_0.n_3162.meme ZNF223-201.PFM-vs-ZNF223-HEK293-ENCSR906PCS.bestfold.pattern_0.n_3162
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF224-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF224-HepG2-ENCSR886VSY.bestfold.profile.pattern_0.n_1582.meme ZNF224-201.PFM-vs-ZNF224-HepG2-ENCSR886VSY.bestfold.pattern_0.n_1582
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF225-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF225-HepG2-ENCSR075PWK.bestfold.profile.pattern_0.n_1612.meme ZNF225-201.PFM-vs-ZNF225-HepG2-ENCSR075PWK.bestfold.pattern_0.n_1612
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF227-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF227-MCF-7-ENCSR877UJB.bestfold.profile.pattern_0.n_306.meme ZNF227-201.PFM-vs-ZNF227-MCF-7-ENCSR877UJB.bestfold.pattern_0.n_306
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF23-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF23-K562-ENCSR898IDK.bestfold.profile.pattern_0.n_676.meme ZNF23-201.PFM-vs-ZNF23-K562-ENCSR898IDK.bestfold.pattern_0.n_676
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF230-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF230-HepG2-ENCSR087HFN.bestfold.profile.pattern_0.n_2622.meme ZNF230-201.PFM-vs-ZNF230-HepG2-ENCSR087HFN.bestfold.pattern_0.n_2622
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF232-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF232-HepG2-ENCSR837GLU.bestfold.profile.pattern_0.n_3391.meme ZNF232-201.PFM-vs-ZNF232-HepG2-ENCSR837GLU.bestfold.pattern_0.n_3391
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF235-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF235-HepG2-ENCSR924KZA.bestfold.profile.pattern_0.n_1349.meme ZNF235-201.PFM-vs-ZNF235-HepG2-ENCSR924KZA.bestfold.pattern_0.n_1349
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF239-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF239-K562-ENCSR606KTL.bestfold.profile.pattern_0.n_1746.meme ZNF239-201.PFM-vs-ZNF239-K562-ENCSR606KTL.bestfold.pattern_0.n_1746
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF24-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF24-K562-ENCSR099NCH.bestfold.profile.pattern_0.n_6743.meme ZNF24-201.PFM-vs-ZNF24-K562-ENCSR099NCH.bestfold.pattern_0.n_6743
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF248-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF248-HEK293-ENCSR338SEM.bestfold.profile.pattern_0.n_624.meme ZNF248-201.PFM-vs-ZNF248-HEK293-ENCSR338SEM.bestfold.pattern_0.n_624
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF25-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF25-HepG2-ENCSR384SQB.bestfold.profile.pattern_0.n_700.meme ZNF25-201.PFM-vs-ZNF25-HepG2-ENCSR384SQB.bestfold.pattern_0.n_700
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF250-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.profile.pattern_0.n_234.meme ZNF250-201.PFM-vs-ZNF250-HEK395-Hughes_NB_models_ZNF250.bestfold.pattern_0.n_234
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.meme ZNF253-201.PFM-vs-ZNF253-K562-ENCSR271RRH.bestfold.pattern_0.n_364
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF253-205/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF253-K562-ENCSR271RRH.bestfold.profile.pattern_0.n_364.meme ZNF253-205.PFM-vs-ZNF253-K562-ENCSR271RRH.bestfold.pattern_0.n_364
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF254-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.profile.pattern_0.n_45.meme ZNF254-202.PFM-vs-ZNF254-HEK396-ChipExo_models_ZNF254.bestfold.pattern_0.n_45
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF256-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF256-HepG2-ENCSR563JME.bestfold.profile.pattern_0.n_510.meme ZNF256-201.PFM-vs-ZNF256-HepG2-ENCSR563JME.bestfold.pattern_0.n_510
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF257-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF257-K562-ENCSR492FKD.bestfold.profile.pattern_0.n_1606.meme ZNF257-201.PFM-vs-ZNF257-K562-ENCSR492FKD.bestfold.pattern_0.n_1606
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF26-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF26-HEK293-ENCSR028EGI.bestfold.profile.pattern_0.n_1282.meme ZNF26-201.PFM-vs-ZNF26-HEK293-ENCSR028EGI.bestfold.pattern_0.n_1282
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF260-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.profile.pattern_0.n_360.meme ZNF260-202.PFM-vs-ZNF260-HEK400-Hughes_GR_models_ZNF260.bestfold.pattern_0.n_360
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF263-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF263-K562-ENCSR845GGY.bestfold.profile.pattern_0.n_9508.meme ZNF263-201.PFM-vs-ZNF263-K562-ENCSR845GGY.bestfold.pattern_0.n_9508
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF264-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF264-HepG2-ENCSR248BVU.bestfold.profile.pattern_0.n_4053.meme ZNF264-201.PFM-vs-ZNF264-HepG2-ENCSR248BVU.bestfold.pattern_0.n_4053
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF266-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.profile.pattern_0.n_77.meme ZNF266-202.PFM-vs-ZNF266-HEK405-ChipExo_models_ZNF266.bestfold.pattern_0.n_77
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF273-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.profile.pattern_0.n_551.meme ZNF273-201.PFM-vs-ZNF273-HEK408-ChipExo_models_ZNF273.bestfold.pattern_0.n_551
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF274-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF274-NT2-D1-ENCSR000EWY.bestfold.profile.pattern_0.n_1114.meme ZNF274-201.PFM-vs-ZNF274-NT2-D1-ENCSR000EWY.bestfold.pattern_0.n_1114
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.meme ZNF276-201.PFM-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.pattern_0.n_2057
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF276-206/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF276-HepG2-ENCSR076KLJ.bestfold.profile.pattern_0.n_2057.meme ZNF276-206.PFM-vs-ZNF276-HepG2-ENCSR076KLJ.bestfold.pattern_0.n_2057
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280A-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.profile.pattern_0.n_352.meme ZNF280A-201.PFM-vs-ZNF280A-HEK411-Hughes_GR_models_ZNF280A.bestfold.pattern_0.n_352
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280C-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF280C-HEK293-ENCSR076KZW.bestfold.profile.pattern_0.n_388.meme ZNF280C-201.PFM-vs-ZNF280C-HEK293-ENCSR076KZW.bestfold.pattern_0.n_388
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF280D-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF280D-HepG2-ENCSR233FJO.bestfold.profile.pattern_0.n_2841.meme ZNF280D-201.PFM-vs-ZNF280D-HepG2-ENCSR233FJO.bestfold.pattern_0.n_2841
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF281-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF281-K562-ENCSR214EKV.bestfold.profile.pattern_0.n_9396.meme ZNF281-201.PFM-vs-ZNF281-K562-ENCSR214EKV.bestfold.pattern_0.n_9396
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF282-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF282-K562-ENCSR742TMU.bestfold.profile.pattern_0.n_4281.meme ZNF282-204.PFM-vs-ZNF282-K562-ENCSR742TMU.bestfold.pattern_0.n_4281
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF283-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.profile.pattern_0.n_162.meme ZNF283-201.PFM-vs-ZNF283-HEK414-ChipExo_models_ZNF283.bestfold.pattern_0.n_162
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF284-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.profile.pattern_0.n_112.meme ZNF284-201.PFM-vs-ZNF284-HEK415-ChipExo_models_ZNF284.bestfold.pattern_0.n_112
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF287-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.profile.pattern_0.n_219.meme ZNF287-201.PFM-vs-ZNF287-HEK416-ChipExo_models_ZNF287.bestfold.pattern_0.n_219
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF292-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF292-HepG2-ENCSR853BYT.bestfold.profile.pattern_0.n_5278.meme ZNF292-201.PFM-vs-ZNF292-HepG2-ENCSR853BYT.bestfold.pattern_0.n_5278
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.meme ZNF3-201.PFM-vs-ZNF3-K562-ENCSR934RJP.bestfold.pattern_0.n_615
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF3-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF3-K562-ENCSR934RJP.bestfold.profile.pattern_0.n_615.meme ZNF3-202.PFM-vs-ZNF3-K562-ENCSR934RJP.bestfold.pattern_0.n_615
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF30-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF30-HepG2-ENCSR891KNP.bestfold.profile.pattern_0.n_759.meme ZNF30-201.PFM-vs-ZNF30-HepG2-ENCSR891KNP.bestfold.pattern_0.n_759
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF302-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF302-A549-ENCSR590IHT.bestfold.profile.pattern_0.n_269.meme ZNF302-201.PFM-vs-ZNF302-A549-ENCSR590IHT.bestfold.pattern_0.n_269
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF304-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.profile.pattern_0.n_110.meme ZNF304-201.PFM-vs-ZNF304-HEK422-ChipExo_models_ZNF304.bestfold.pattern_0.n_110
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF311-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF311-K562-ENCSR388ZRV.bestfold.profile.pattern_0.n_2506.meme ZNF311-203.PFM-vs-ZNF311-K562-ENCSR388ZRV.bestfold.pattern_0.n_2506
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF316-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF316-K562-ENCSR200JYP.bestfold.profile.pattern_0.n_14799.meme ZNF316-201.PFM-vs-ZNF316-K562-ENCSR200JYP.bestfold.pattern_0.n_14799
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF317-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF317-K562-ENCSR976MXN.bestfold.profile.pattern_0.n_4509.meme ZNF317-201.PFM-vs-ZNF317-K562-ENCSR976MXN.bestfold.pattern_0.n_4509
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF319-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF319-K562-ENCSR231PDA.bestfold.profile.pattern_0.n_6347.meme ZNF319-201.PFM-vs-ZNF319-K562-ENCSR231PDA.bestfold.pattern_0.n_6347
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF320-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.profile.pattern_0.n_419.meme ZNF320-204.PFM-vs-ZNF320-HEK427-Hughes_GR_models_ZNF320.bestfold.pattern_0.n_419
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF322-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.profile.pattern_0.n_1678.meme ZNF322-201.PFM-vs-ZNF322-HEK429-Hughes_NB_models_ZNF322.bestfold.pattern_0.n_1678
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF324-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF324-K562-ENCSR712KVZ.bestfold.profile.pattern_0.n_2994.meme ZNF324-201.PFM-vs-ZNF324-K562-ENCSR712KVZ.bestfold.pattern_0.n_2994
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF329-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF329-HepG2-ENCSR681KXT.bestfold.profile.pattern_0.n_1191.meme ZNF329-201.PFM-vs-ZNF329-HepG2-ENCSR681KXT.bestfold.pattern_0.n_1191
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF331-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF331-HepG2-ENCSR369TCR.bestfold.profile.pattern_0.n_4644.meme ZNF331-201.PFM-vs-ZNF331-HepG2-ENCSR369TCR.bestfold.pattern_0.n_4644
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF333-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF333-HepG2-ENCSR505UNL.bestfold.profile.pattern_0.n_1205.meme ZNF333-201.PFM-vs-ZNF333-HepG2-ENCSR505UNL.bestfold.pattern_0.n_1205
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF334-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.profile.pattern_0.n_68.meme ZNF334-201.PFM-vs-ZNF334-HEK437-ChipExo_models_ZNF334.bestfold.pattern_0.n_68
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF337-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF337-HepG2-ENCSR759KXQ.bestfold.profile.pattern_0.n_1608.meme ZNF337-201.PFM-vs-ZNF337-HepG2-ENCSR759KXQ.bestfold.pattern_0.n_1608
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.meme ZNF33A-201.PFM-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.pattern_0.n_685
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33A-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF33A-HepG2-ENCSR110BYN.bestfold.profile.pattern_0.n_685.meme ZNF33A-203.PFM-vs-ZNF33A-HepG2-ENCSR110BYN.bestfold.pattern_0.n_685
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF33B-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF33B-HepG2-ENCSR052FXA.bestfold.profile.pattern_0.n_1141.meme ZNF33B-201.PFM-vs-ZNF33B-HepG2-ENCSR052FXA.bestfold.pattern_0.n_1141
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF34-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF34-HEK293-ENCSR727PIC.bestfold.profile.pattern_0.n_8193.meme ZNF34-201.PFM-vs-ZNF34-HEK293-ENCSR727PIC.bestfold.pattern_0.n_8193
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF341-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF341-HEK293-ENCSR185FOY.bestfold.profile.pattern_0.n_10291.meme ZNF341-203.PFM-vs-ZNF341-HEK293-ENCSR185FOY.bestfold.pattern_0.n_10291
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF347-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF347-K562-ENCSR590FLL.bestfold.profile.pattern_0.n_533.meme ZNF347-201.PFM-vs-ZNF347-K562-ENCSR590FLL.bestfold.pattern_0.n_533
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF35-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.profile.pattern_0.n_2046.meme ZNF35-201.PFM-vs-ZNF35-HEK445-Hughes_GR_models_ZNF35.bestfold.pattern_0.n_2046
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF350-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF350-HepG2-ENCSR842SRB.bestfold.profile.pattern_0.n_3800.meme ZNF350-201.PFM-vs-ZNF350-HepG2-ENCSR842SRB.bestfold.pattern_0.n_3800
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354A-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.profile.pattern_0.n_38.meme ZNF354A-201.PFM-vs-ZNF354A-HEK448-ChipExo_models_ZNF354A.bestfold.pattern_0.n_38
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.meme ZNF354B-201.PFM-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.pattern_0.n_1834
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354B-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF354B-K562-ENCSR674SCQ.bestfold.profile.pattern_0.n_1834.meme ZNF354B-204.PFM-vs-ZNF354B-K562-ENCSR674SCQ.bestfold.pattern_0.n_1834
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF354C-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF354C-K562-ENCSR506SSQ.bestfold.profile.pattern_0.n_8249.meme ZNF354C-201.PFM-vs-ZNF354C-K562-ENCSR506SSQ.bestfold.pattern_0.n_8249
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF367-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF367-HepG2-ENCSR048WVW.bestfold.profile.pattern_0.n_420.meme ZNF367-201.PFM-vs-ZNF367-HepG2-ENCSR048WVW.bestfold.pattern_0.n_420
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF37A-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF37A-HEK293-ENCSR371LLY.bestfold.profile.pattern_0.n_539.meme ZNF37A-201.PFM-vs-ZNF37A-HEK293-ENCSR371LLY.bestfold.pattern_0.n_539
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF382-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.profile.pattern_0.n_2190.meme ZNF382-201.PFM-vs-ZNF382-HEK452-Hughes_GR_models_ZNF382.bestfold.pattern_0.n_2190
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF383-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF383-HepG2-ENCSR264LQX.bestfold.profile.pattern_0.n_619.meme ZNF383-201.PFM-vs-ZNF383-HepG2-ENCSR264LQX.bestfold.pattern_0.n_619
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.meme ZNF384-201.PFM-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.pattern_0.n_6883
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF384-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF384-HepG2-ENCSR101FJU.bestfold.profile.pattern_0.n_6883.meme ZNF384-203.PFM-vs-ZNF384-HepG2-ENCSR101FJU.bestfold.pattern_0.n_6883
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF391-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF391-HEK293-ENCSR210MET.bestfold.profile.pattern_0.n_1228.meme ZNF391-201.PFM-vs-ZNF391-HEK293-ENCSR210MET.bestfold.pattern_0.n_1228
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF394-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF394-HEK293-ENCSR125DNC.bestfold.profile.pattern_0.n_6934.meme ZNF394-201.PFM-vs-ZNF394-HEK293-ENCSR125DNC.bestfold.pattern_0.n_6934
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF397-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF397-K562-ENCSR508EEX.bestfold.profile.pattern_0.n_520.meme ZNF397-202.PFM-vs-ZNF397-K562-ENCSR508EEX.bestfold.pattern_0.n_520
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF398-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF398-HEK293-ENCSR676ZEF.bestfold.profile.pattern_0.n_11151.meme ZNF398-202.PFM-vs-ZNF398-HEK293-ENCSR676ZEF.bestfold.pattern_0.n_11151
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF404-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF404-HEK293-ENCSR669GUM.bestfold.profile.pattern_0.n_1776.meme ZNF404-201.PFM-vs-ZNF404-HEK293-ENCSR669GUM.bestfold.pattern_0.n_1776
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.meme ZNF407-201.PFM-vs-ZNF407-K562-ENCSR011NOZ.bestfold.pattern_0.n_2600
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.meme ZNF407-202.PFM-vs-ZNF407-K562-ENCSR011NOZ.bestfold.pattern_0.n_2600
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF407-205/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF407-K562-ENCSR011NOZ.bestfold.profile.pattern_0.n_2600.meme ZNF407-205.PFM-vs-ZNF407-K562-ENCSR011NOZ.bestfold.pattern_0.n_2600
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF408-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF408-K562-ENCSR758PLU.bestfold.profile.pattern_0.n_353.meme ZNF408-201.PFM-vs-ZNF408-K562-ENCSR758PLU.bestfold.pattern_0.n_353
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF41-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF41-K562-ENCSR235PYI.bestfold.profile.pattern_0.n_1310.meme ZNF41-201.PFM-vs-ZNF41-K562-ENCSR235PYI.bestfold.pattern_0.n_1310
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.meme ZNF415-201.PFM-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.pattern_0.n_39
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF415-224/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.profile.pattern_0.n_39.meme ZNF415-224.PFM-vs-ZNF415-HEK459-Hughes_NB_models_ZNF415.bestfold.pattern_0.n_39
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF416-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF416-WTC11-ENCSR288NNJ.bestfold.profile.pattern_0.n_560.meme ZNF416-201.PFM-vs-ZNF416-WTC11-ENCSR288NNJ.bestfold.pattern_0.n_560
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF417-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.profile.pattern_0.n_223.meme ZNF417-201.PFM-vs-ZNF417-HEK460-ChipExo_models_ZNF417.bestfold.pattern_0.n_223
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF418-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.profile.pattern_0.n_25.meme ZNF418-201.PFM-vs-ZNF418-HEK461-Hughes_GR_models_ZNF418.bestfold.pattern_0.n_25
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF419-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.profile.pattern_0.n_47.meme ZNF419-201.PFM-vs-ZNF419-HEK463-ChipExo_models_ZNF419.bestfold.pattern_0.n_47
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.meme ZNF423-201.PFM-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.pattern_0.n_17384
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF423-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF423-WTC11-ENCSR413CVQ.bestfold.profile.pattern_0.n_17384.meme ZNF423-202.PFM-vs-ZNF423-WTC11-ENCSR413CVQ.bestfold.pattern_0.n_17384
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF425-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF425-WTC11-ENCSR717QWW.bestfold.profile.pattern_0.n_291.meme ZNF425-201.PFM-vs-ZNF425-WTC11-ENCSR717QWW.bestfold.pattern_0.n_291
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF426-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF426-HEK293-ENCSR224NFP.bestfold.profile.pattern_0.n_10016.meme ZNF426-201.PFM-vs-ZNF426-HEK293-ENCSR224NFP.bestfold.pattern_0.n_10016
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF431-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF431-K562-ENCSR609ZLF.bestfold.profile.pattern_0.n_1877.meme ZNF431-201.PFM-vs-ZNF431-K562-ENCSR609ZLF.bestfold.pattern_0.n_1877
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF432-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF432-HepG2-ENCSR043VRG.bestfold.profile.pattern_0.n_124.meme ZNF432-201.PFM-vs-ZNF432-HepG2-ENCSR043VRG.bestfold.pattern_0.n_124
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF433-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF433-HEK293-ENCSR586BRJ.bestfold.profile.pattern_0.n_3643.meme ZNF433-201.PFM-vs-ZNF433-HEK293-ENCSR586BRJ.bestfold.pattern_0.n_3643
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF436-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF436-K562-ENCSR335SUD.bestfold.profile.pattern_0.n_1096.meme ZNF436-201.PFM-vs-ZNF436-K562-ENCSR335SUD.bestfold.pattern_0.n_1096
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF44-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF44-HepG2-ENCSR914HPP.bestfold.profile.pattern_0.n_1807.meme ZNF44-203.PFM-vs-ZNF44-HepG2-ENCSR914HPP.bestfold.pattern_0.n_1807
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF440-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.profile.pattern_0.n_227.meme ZNF440-201.PFM-vs-ZNF440-HEK473-ChipExo_models_ZNF440.bestfold.pattern_0.n_227
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF441-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF441-HepG2-ENCSR673GDQ.bestfold.profile.pattern_0.n_2040.meme ZNF441-201.PFM-vs-ZNF441-HepG2-ENCSR673GDQ.bestfold.pattern_0.n_2040
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF444-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF444-MCF-7-ENCSR038XIA.bestfold.profile.pattern_0.n_10989.meme ZNF444-201.PFM-vs-ZNF444-MCF-7-ENCSR038XIA.bestfold.pattern_0.n_10989
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF445-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF445-K562-ENCSR883UGG.bestfold.profile.pattern_0.n_609.meme ZNF445-201.PFM-vs-ZNF445-K562-ENCSR883UGG.bestfold.pattern_0.n_609
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.meme ZNF446-202.PFM-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.pattern_0.n_1012
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.meme ZNF446-203.PFM-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.pattern_0.n_1012
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF446-207/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF446-HepG2-ENCSR839AJZ.bestfold.profile.pattern_0.n_1012.meme ZNF446-207.PFM-vs-ZNF446-HepG2-ENCSR839AJZ.bestfold.pattern_0.n_1012
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF449-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF449-K562-ENCSR659YWQ.bestfold.profile.pattern_0.n_1181.meme ZNF449-201.PFM-vs-ZNF449-K562-ENCSR659YWQ.bestfold.pattern_0.n_1181
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF45-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.profile.pattern_0.n_66.meme ZNF45-201.PFM-vs-ZNF45-HEK479-Hughes_NB_models_ZNF45.bestfold.pattern_0.n_66
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF454-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.profile.pattern_0.n_78.meme ZNF454-201.PFM-vs-ZNF454-HEK481-Hughes_NB_models_ZNF454.bestfold.pattern_0.n_78
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF460-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF460-HepG2-ENCSR261UIH.bestfold.profile.pattern_0.n_8846.meme ZNF460-201.PFM-vs-ZNF460-HepG2-ENCSR261UIH.bestfold.pattern_0.n_8846
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.meme ZNF462-201.PFM-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.pattern_0.n_2563
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF462-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF462-GM23338-ENCSR334UWP.bestfold.profile.pattern_0.n_2563.meme ZNF462-202.PFM-vs-ZNF462-GM23338-ENCSR334UWP.bestfold.pattern_0.n_2563
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF467-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.profile.pattern_0.n_1900.meme ZNF467-201.PFM-vs-ZNF467-HEK484-Hughes_NB_models_ZNF467.bestfold.pattern_0.n_1900
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.meme ZNF468-201.PFM-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.pattern_0.n_1045
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF468-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF468-HepG2-ENCSR613YQN.bestfold.profile.pattern_0.n_1045.meme ZNF468-202.PFM-vs-ZNF468-HepG2-ENCSR613YQN.bestfold.pattern_0.n_1045
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF473-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF473-HEK293-ENCSR567XAM.bestfold.profile.pattern_0.n_460.meme ZNF473-201.PFM-vs-ZNF473-HEK293-ENCSR567XAM.bestfold.pattern_0.n_460
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF479-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.profile.pattern_0.n_1506.meme ZNF479-201.PFM-vs-ZNF479-HEK487-ChipExo_models_ZNF479.bestfold.pattern_0.n_1506
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF483-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF483-HepG2-ENCSR436PIH.bestfold.profile.pattern_0.n_2464.meme ZNF483-201.PFM-vs-ZNF483-HepG2-ENCSR436PIH.bestfold.pattern_0.n_2464
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF484-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF484-HepG2-ENCSR471VAY.bestfold.profile.pattern_0.n_213.meme ZNF484-202.PFM-vs-ZNF484-HepG2-ENCSR471VAY.bestfold.pattern_0.n_213
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF485-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF485-HepG2-ENCSR574UJE.bestfold.profile.pattern_0.n_1203.meme ZNF485-201.PFM-vs-ZNF485-HepG2-ENCSR574UJE.bestfold.pattern_0.n_1203
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF486-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.profile.pattern_0.n_49.meme ZNF486-201.PFM-vs-ZNF486-HEK492-ChipExo_models_ZNF486.bestfold.pattern_0.n_49
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF488-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF488-HEK293-ENCSR363XBR.bestfold.profile.pattern_0.n_953.meme ZNF488-201.PFM-vs-ZNF488-HEK293-ENCSR363XBR.bestfold.pattern_0.n_953
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF490-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF490-HepG2-ENCSR542PZA.bestfold.profile.pattern_0.n_1566.meme ZNF490-201.PFM-vs-ZNF490-HepG2-ENCSR542PZA.bestfold.pattern_0.n_1566
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF496-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF496-HepG2-ENCSR828TVO.bestfold.profile.pattern_0.n_30.meme ZNF496-201.PFM-vs-ZNF496-HepG2-ENCSR828TVO.bestfold.pattern_0.n_30
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF501-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF501-HepG2-ENCSR227PHM.bestfold.profile.pattern_0.n_4358.meme ZNF501-201.PFM-vs-ZNF501-HepG2-ENCSR227PHM.bestfold.pattern_0.n_4358
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF507-205/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF507-K562-ENCSR598TIR.bestfold.profile.pattern_0.n_7182.meme ZNF507-205.PFM-vs-ZNF507-K562-ENCSR598TIR.bestfold.pattern_0.n_7182
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF510-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF510-HEK293-ENCSR595FAO.bestfold.profile.pattern_0.n_2751.meme ZNF510-201.PFM-vs-ZNF510-HEK293-ENCSR595FAO.bestfold.pattern_0.n_2751
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF511-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF511-HepG2-ENCSR372JXR.bestfold.profile.pattern_0.n_2451.meme ZNF511-203.PFM-vs-ZNF511-HepG2-ENCSR372JXR.bestfold.pattern_0.n_2451
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF512-K562-ENCSR591CCL.bestfold.profile.pattern_0.n_10251.meme ZNF512-201.PFM-vs-ZNF512-K562-ENCSR591CCL.bestfold.pattern_0.n_10251
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF512B-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF512B-MCF-7-ENCSR761LRR.bestfold.profile.pattern_0.n_1616.meme ZNF512B-201.PFM-vs-ZNF512B-MCF-7-ENCSR761LRR.bestfold.pattern_0.n_1616
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.meme ZNF513-201.PFM-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.pattern_0.n_11863
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF513-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF513-HEK293-ENCSR503DPC.bestfold.profile.pattern_0.n_11863.meme ZNF513-202.PFM-vs-ZNF513-HEK293-ENCSR503DPC.bestfold.pattern_0.n_11863
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF514-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF514-HEK293-ENCSR897RVP.bestfold.profile.pattern_0.n_837.meme ZNF514-201.PFM-vs-ZNF514-HEK293-ENCSR897RVP.bestfold.pattern_0.n_837
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF518A-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF518A-HEK293-ENCSR159GFL.bestfold.profile.pattern_0.n_6522.meme ZNF518A-202.PFM-vs-ZNF518A-HEK293-ENCSR159GFL.bestfold.pattern_0.n_6522
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF519-207/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.profile.pattern_0.n_1001.meme ZNF519-207.PFM-vs-ZNF519-HEK500-ChipExo_models_ZNF519.bestfold.pattern_0.n_1001
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.meme ZNF521-201.PFM-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.pattern_0.n_180
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF521-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF521-HEK293-ENCSR665KYH.bestfold.profile.pattern_0.n_180.meme ZNF521-202.PFM-vs-ZNF521-HEK293-ENCSR665KYH.bestfold.pattern_0.n_180
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF524-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.profile.pattern_0.n_65.meme ZNF524-201.PFM-vs-ZNF524-HEK501-Hughes_GR_models_ZNF524.bestfold.pattern_0.n_65
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF526-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF526-HepG2-ENCSR608XRC.bestfold.profile.pattern_0.n_1103.meme ZNF526-201.PFM-vs-ZNF526-HepG2-ENCSR608XRC.bestfold.pattern_0.n_1103
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF527-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF527-HepG2-ENCSR656RTA.bestfold.profile.pattern_0.n_1595.meme ZNF527-201.PFM-vs-ZNF527-HepG2-ENCSR656RTA.bestfold.pattern_0.n_1595
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF528-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.profile.pattern_0.n_692.meme ZNF528-201.PFM-vs-ZNF528-HEK505-Hughes_NB_models_ZNF528.bestfold.pattern_0.n_692
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF529-209/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF529-HEK293-ENCSR754SOI.bestfold.profile.pattern_0.n_1165.meme ZNF529-209.PFM-vs-ZNF529-HEK293-ENCSR754SOI.bestfold.pattern_0.n_1165
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF530-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF530-HEK293-ENCSR701RXW.bestfold.profile.pattern_0.n_1039.meme ZNF530-201.PFM-vs-ZNF530-HEK293-ENCSR701RXW.bestfold.pattern_0.n_1039
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF534-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.profile.pattern_0.n_1761.meme ZNF534-202.PFM-vs-ZNF534-HEK509-ChipExo_models_ZNF534.bestfold.pattern_0.n_1761
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF543-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF543-HepG2-ENCSR584DEL.bestfold.profile.pattern_0.n_1805.meme ZNF543-201.PFM-vs-ZNF543-HepG2-ENCSR584DEL.bestfold.pattern_0.n_1805
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF544-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF544-HEK293-ENCSR167XFW.bestfold.profile.pattern_0.n_566.meme ZNF544-201.PFM-vs-ZNF544-HEK293-ENCSR167XFW.bestfold.pattern_0.n_566
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF547-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF547-HepG2-ENCSR964ZJC.bestfold.profile.pattern_0.n_1732.meme ZNF547-201.PFM-vs-ZNF547-HepG2-ENCSR964ZJC.bestfold.pattern_0.n_1732
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF548-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF548-HepG2-ENCSR756UNW.bestfold.profile.pattern_0.n_2478.meme ZNF548-201.PFM-vs-ZNF548-HepG2-ENCSR756UNW.bestfold.pattern_0.n_2478
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF549-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF549-HEK293-ENCSR185QFX.bestfold.profile.pattern_0.n_2271.meme ZNF549-201.PFM-vs-ZNF549-HEK293-ENCSR185QFX.bestfold.pattern_0.n_2271
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF550-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF550-HepG2-ENCSR198BHH.bestfold.profile.pattern_0.n_1061.meme ZNF550-201.PFM-vs-ZNF550-HepG2-ENCSR198BHH.bestfold.pattern_0.n_1061
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF552-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF552-HepG2-ENCSR448RAP.bestfold.profile.pattern_0.n_1045.meme ZNF552-201.PFM-vs-ZNF552-HepG2-ENCSR448RAP.bestfold.pattern_0.n_1045
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF554-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.profile.pattern_0.n_809.meme ZNF554-201.PFM-vs-ZNF554-HEK519-Hughes_GR_models_ZNF554.bestfold.pattern_0.n_809
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF555-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF555-HEK293-ENCSR767XSF.bestfold.profile.pattern_0.n_6289.meme ZNF555-201.PFM-vs-ZNF555-HEK293-ENCSR767XSF.bestfold.pattern_0.n_6289
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF556-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF556-HepG2-ENCSR644WQN.bestfold.profile.pattern_0.n_3031.meme ZNF556-201.PFM-vs-ZNF556-HepG2-ENCSR644WQN.bestfold.pattern_0.n_3031
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF557-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF557-HepG2-ENCSR325VYA.bestfold.profile.pattern_0.n_760.meme ZNF557-201.PFM-vs-ZNF557-HepG2-ENCSR325VYA.bestfold.pattern_0.n_760
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF558-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF558-HEK293-ENCSR447ZTA.bestfold.profile.pattern_0.n_2891.meme ZNF558-201.PFM-vs-ZNF558-HEK293-ENCSR447ZTA.bestfold.pattern_0.n_2891
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF569-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF569-HepG2-ENCSR225SLE.bestfold.profile.pattern_0.n_352.meme ZNF569-203.PFM-vs-ZNF569-HepG2-ENCSR225SLE.bestfold.pattern_0.n_352
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.meme ZNF57-201.PFM-vs-ZNF57-K562-ENCSR918EFA.bestfold.pattern_0.n_216
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF57-205/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF57-K562-ENCSR918EFA.bestfold.profile.pattern_0.n_216.meme ZNF57-205.PFM-vs-ZNF57-K562-ENCSR918EFA.bestfold.pattern_0.n_216
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF576-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF576-HepG2-ENCSR253HUM.bestfold.profile.pattern_0.n_719.meme ZNF576-201.PFM-vs-ZNF576-HepG2-ENCSR253HUM.bestfold.pattern_0.n_719
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF582-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.profile.pattern_0.n_44.meme ZNF582-201.PFM-vs-ZNF582-HEK536-Hughes_GR_models_ZNF582.bestfold.pattern_0.n_44
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.meme ZNF583-201.PFM-vs-ZNF583-K562-ENCSR775EQV.bestfold.pattern_0.n_1524
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF583-207/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF583-K562-ENCSR775EQV.bestfold.profile.pattern_0.n_1524.meme ZNF583-207.PFM-vs-ZNF583-K562-ENCSR775EQV.bestfold.pattern_0.n_1524
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF584-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF584-K562-ENCSR149ZBI.bestfold.profile.pattern_0.n_2952.meme ZNF584-201.PFM-vs-ZNF584-K562-ENCSR149ZBI.bestfold.pattern_0.n_2952
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF585B-205/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF585B-HEK293-ENCSR011XCI.bestfold.profile.pattern_0.n_5269.meme ZNF585B-205.PFM-vs-ZNF585B-HEK293-ENCSR011XCI.bestfold.pattern_0.n_5269
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF589-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF589-K562-ENCSR603XLW.bestfold.profile.pattern_0.n_6261.meme ZNF589-201.PFM-vs-ZNF589-K562-ENCSR603XLW.bestfold.pattern_0.n_6261
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF592-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF592-MCF-7-ENCSR701AQS.bestfold.profile.pattern_0.n_1431.meme ZNF592-201.PFM-vs-ZNF592-MCF-7-ENCSR701AQS.bestfold.pattern_0.n_1431
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF594-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.profile.pattern_0.n_45.meme ZNF594-201.PFM-vs-ZNF594-HEK541-Hughes_GR_models_ZNF594.bestfold.pattern_0.n_45
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF596-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF596-HEK293-ENCSR344SBD.bestfold.profile.pattern_0.n_7643.meme ZNF596-201.PFM-vs-ZNF596-HEK293-ENCSR344SBD.bestfold.pattern_0.n_7643
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF597-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF597-HepG2-ENCSR669PVF.bestfold.profile.pattern_0.n_299.meme ZNF597-201.PFM-vs-ZNF597-HepG2-ENCSR669PVF.bestfold.pattern_0.n_299
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF613-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.profile.pattern_0.n_48.meme ZNF613-201.PFM-vs-ZNF613-HEK547-ChipExo_models_ZNF613.bestfold.pattern_0.n_48
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF614-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF614-HepG2-ENCSR011CIR.bestfold.profile.pattern_0.n_4485.meme ZNF614-201.PFM-vs-ZNF614-HepG2-ENCSR011CIR.bestfold.pattern_0.n_4485
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF615-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF615-HepG2-ENCSR286LPH.bestfold.profile.pattern_0.n_526.meme ZNF615-201.PFM-vs-ZNF615-HepG2-ENCSR286LPH.bestfold.pattern_0.n_526
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF616-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF616-HepG2-ENCSR654PQY.bestfold.profile.pattern_0.n_1012.meme ZNF616-204.PFM-vs-ZNF616-HepG2-ENCSR654PQY.bestfold.pattern_0.n_1012
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF619-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF619-HepG2-ENCSR613RDS.bestfold.profile.pattern_0.n_2530.meme ZNF619-201.PFM-vs-ZNF619-HepG2-ENCSR613RDS.bestfold.pattern_0.n_2530
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF621-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.profile.pattern_0.n_362.meme ZNF621-202.PFM-vs-ZNF621-HEK554-Hughes_NB_models_ZNF621.bestfold.pattern_0.n_362
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF623-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF623-HEK293-ENCSR022IZK.bestfold.profile.pattern_0.n_6133.meme ZNF623-201.PFM-vs-ZNF623-HEK293-ENCSR022IZK.bestfold.pattern_0.n_6133
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF624-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF624-A549-ENCSR419VVI.bestfold.profile.pattern_0.n_972.meme ZNF624-201.PFM-vs-ZNF624-A549-ENCSR419VVI.bestfold.pattern_0.n_972
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF626-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF626-HEK293-ENCSR588MQZ.bestfold.profile.pattern_0.n_319.meme ZNF626-204.PFM-vs-ZNF626-HEK293-ENCSR588MQZ.bestfold.pattern_0.n_319
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF629-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF629-HepG2-ENCSR363ASY.bestfold.profile.pattern_0.n_15291.meme ZNF629-201.PFM-vs-ZNF629-HepG2-ENCSR363ASY.bestfold.pattern_0.n_15291
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF639-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF639-K562-ENCSR845BCL.bestfold.profile.pattern_0.n_4734.meme ZNF639-201.PFM-vs-ZNF639-K562-ENCSR845BCL.bestfold.pattern_0.n_4734
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.meme ZNF644-201.PFM-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.pattern_0.n_6409
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF644-212/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF644-HepG2-ENCSR578CXC.bestfold.profile.pattern_0.n_6409.meme ZNF644-212.PFM-vs-ZNF644-HepG2-ENCSR578CXC.bestfold.pattern_0.n_6409
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF649-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.profile.pattern_0.n_170.meme ZNF649-201.PFM-vs-ZNF649-HEK558-ChipExo_models_ZNF649.bestfold.pattern_0.n_170
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF652-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF652-HepG2-ENCSR502GAX.bestfold.profile.pattern_0.n_8526.meme ZNF652-201.PFM-vs-ZNF652-HepG2-ENCSR502GAX.bestfold.pattern_0.n_8526
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.meme ZNF654-201.PFM-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.pattern_0.n_13429
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF654-204/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF654-HEK293-ENCSR504VDV.bestfold.profile.pattern_0.n_13429.meme ZNF654-204.PFM-vs-ZNF654-HEK293-ENCSR504VDV.bestfold.pattern_0.n_13429
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.meme ZNF658-201.PFM-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.pattern_0.n_231
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF658-207/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF658-HEK293-ENCSR762DQP.bestfold.profile.pattern_0.n_231.meme ZNF658-207.PFM-vs-ZNF658-HEK293-ENCSR762DQP.bestfold.pattern_0.n_231
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF660-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF660-HEK293-ENCSR283DOU.bestfold.profile.pattern_0.n_9044.meme ZNF660-201.PFM-vs-ZNF660-HEK293-ENCSR283DOU.bestfold.pattern_0.n_9044
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF662-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.profile.pattern_0.n_51.meme ZNF662-201.PFM-vs-ZNF662-HEK559-ChipExo_models_ZNF662.bestfold.pattern_0.n_51
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF664-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF664-HEK293-ENCSR714LZQ.bestfold.profile.pattern_0.n_9743.meme ZNF664-201.PFM-vs-ZNF664-HEK293-ENCSR714LZQ.bestfold.pattern_0.n_9743
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF670-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF670-HepG2-ENCSR699ZES.bestfold.profile.pattern_0.n_5535.meme ZNF670-201.PFM-vs-ZNF670-HepG2-ENCSR699ZES.bestfold.pattern_0.n_5535
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF671-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.profile.pattern_0.n_174.meme ZNF671-201.PFM-vs-ZNF671-HEK564-ChipExo_models_ZNF671.bestfold.pattern_0.n_174
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF674-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF674-HepG2-ENCSR171BKT.bestfold.profile.pattern_0.n_400.meme ZNF674-201.PFM-vs-ZNF674-HepG2-ENCSR171BKT.bestfold.pattern_0.n_400
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF675-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.profile.pattern_0.n_553.meme ZNF675-201.PFM-vs-ZNF675-HEK567-ChipExo_models_ZNF675.bestfold.pattern_0.n_553
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF677-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF677-HEK293-ENCSR279KDC.bestfold.profile.pattern_0.n_2820.meme ZNF677-201.PFM-vs-ZNF677-HEK293-ENCSR279KDC.bestfold.pattern_0.n_2820
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF678-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF678-HepG2-ENCSR946PKH.bestfold.profile.pattern_0.n_2719.meme ZNF678-201.PFM-vs-ZNF678-HepG2-ENCSR946PKH.bestfold.pattern_0.n_2719
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF680-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF680-HEK293-ENCSR307CKC.bestfold.profile.pattern_0.n_6437.meme ZNF680-201.PFM-vs-ZNF680-HEK293-ENCSR307CKC.bestfold.pattern_0.n_6437
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF682-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.profile.pattern_0.n_160.meme ZNF682-201.PFM-vs-ZNF682-HEK572-ChipExo_models_ZNF682.bestfold.pattern_0.n_160
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF684-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.profile.pattern_0.n_71.meme ZNF684-203.PFM-vs-ZNF684-HEK574-ChipExo_models_ZNF684.bestfold.pattern_0.n_71
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF687-207/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF687-MCF-7-ENCSR899BKM.bestfold.profile.pattern_0.n_6157.meme ZNF687-207.PFM-vs-ZNF687-MCF-7-ENCSR899BKM.bestfold.pattern_0.n_6157
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF691-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF691-HepG2-ENCSR130ZAR.bestfold.profile.pattern_0.n_2516.meme ZNF691-201.PFM-vs-ZNF691-HepG2-ENCSR130ZAR.bestfold.pattern_0.n_2516
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF692-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF692-HEK293-ENCSR418MKG.bestfold.profile.pattern_0.n_6169.meme ZNF692-201.PFM-vs-ZNF692-HEK293-ENCSR418MKG.bestfold.pattern_0.n_6169
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF695-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF695-K562-ENCSR187RGF.bestfold.profile.pattern_0.n_172.meme ZNF695-201.PFM-vs-ZNF695-K562-ENCSR187RGF.bestfold.pattern_0.n_172
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF696-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF696-K562-ENCSR276RQG.bestfold.profile.pattern_0.n_243.meme ZNF696-201.PFM-vs-ZNF696-K562-ENCSR276RQG.bestfold.pattern_0.n_243
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF697-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF697-HepG2-ENCSR734WFB.bestfold.profile.pattern_0.n_2238.meme ZNF697-201.PFM-vs-ZNF697-HepG2-ENCSR734WFB.bestfold.pattern_0.n_2238
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF7-HepG2-ENCSR553QMC.bestfold.profile.pattern_0.n_4841.meme ZNF7-202.PFM-vs-ZNF7-HepG2-ENCSR553QMC.bestfold.pattern_0.n_4841
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF7-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF7-K562-ENCSR454SCH.bestfold.profile.pattern_0.n_3215.meme ZNF7-202.PFM-vs-ZNF7-K562-ENCSR454SCH.bestfold.pattern_0.n_3215
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF700-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF700-K562-ENCSR959BQO.bestfold.profile.pattern_0.n_322.meme ZNF700-201.PFM-vs-ZNF700-K562-ENCSR959BQO.bestfold.pattern_0.n_322
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF703-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF701-HEK293-ENCSR547TGL.bestfold.profile.pattern_0.n_390.meme ZNF703-201.PFM-vs-ZNF701-HEK293-ENCSR547TGL.bestfold.pattern_0.n_390
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF704-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF704-HepG2-ENCSR523RGJ.bestfold.profile.pattern_0.n_1582.meme ZNF704-201.PFM-vs-ZNF704-HepG2-ENCSR523RGJ.bestfold.pattern_0.n_1582
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF708-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.profile.pattern_0.n_60.meme ZNF708-201.PFM-vs-ZNF708-HEK582-Hughes_GR_models_ZNF708.bestfold.pattern_0.n_60
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF709-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF709-HepG2-ENCSR984IXF.bestfold.profile.pattern_0.n_1423.meme ZNF709-201.PFM-vs-ZNF709-HepG2-ENCSR984IXF.bestfold.pattern_0.n_1423
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF71-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.profile.pattern_0.n_320.meme ZNF71-203.PFM-vs-ZNF71-HEK584-Hughes_NB_models_ZNF71.bestfold.pattern_0.n_320
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF710-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF710-HepG2-ENCSR670UEX.bestfold.profile.pattern_0.n_5368.meme ZNF710-201.PFM-vs-ZNF710-HepG2-ENCSR670UEX.bestfold.pattern_0.n_5368
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF713-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF713-HepG2-ENCSR513NBU.bestfold.profile.pattern_0.n_1256.meme ZNF713-201.PFM-vs-ZNF713-HepG2-ENCSR513NBU.bestfold.pattern_0.n_1256
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF736-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.profile.pattern_0.n_97.meme ZNF736-201.PFM-vs-ZNF736-HEK588-ChipExo_models_ZNF736.bestfold.pattern_0.n_97
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF740-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF740-K562-ENCSR737UST.bestfold.profile.pattern_0.n_3156.meme ZNF740-201.PFM-vs-ZNF740-K562-ENCSR737UST.bestfold.pattern_0.n_3156
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF747-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF747-HepG2-ENCSR155IXY.bestfold.profile.pattern_0.n_4084.meme ZNF747-203.PFM-vs-ZNF747-HepG2-ENCSR155IXY.bestfold.pattern_0.n_4084
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF749-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF749-HepG2-ENCSR125MLR.bestfold.profile.pattern_0.n_1270.meme ZNF749-201.PFM-vs-ZNF749-HepG2-ENCSR125MLR.bestfold.pattern_0.n_1270
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF75A-210/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF75A-K562-ENCSR099MNR.bestfold.profile.pattern_0.n_2195.meme ZNF75A-210.PFM-vs-ZNF75A-K562-ENCSR099MNR.bestfold.pattern_0.n_2195
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.meme ZNF76-201.PFM-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.pattern_0.n_8999
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.meme ZNF76-202.PFM-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.pattern_0.n_8999
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF76-209/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.meme ZNF76-209.PFM-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.pattern_0.n_8999
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF764-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF76-HEK293-ENCSR072LQF.bestfold.profile.pattern_0.n_8999.meme ZNF764-201.PFM-vs-ZNF76-HEK293-ENCSR072LQF.bestfold.pattern_0.n_8999
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF761-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF761-HepG2-ENCSR622AMZ.bestfold.profile.pattern_0.n_2636.meme ZNF761-202.PFM-vs-ZNF761-HepG2-ENCSR622AMZ.bestfold.pattern_0.n_2636
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF765-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.profile.pattern_0.n_115.meme ZNF765-201.PFM-vs-ZNF765-HEK594-ChipExo_models_ZNF765.bestfold.pattern_0.n_115
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF777-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF777-HepG2-ENCSR068ZQR.bestfold.profile.pattern_0.n_8064.meme ZNF777-201.PFM-vs-ZNF777-HepG2-ENCSR068ZQR.bestfold.pattern_0.n_8064
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF778-207/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.profile.pattern_0.n_487.meme ZNF778-207.PFM-vs-ZNF778-HEK601-Hughes_GR_models_ZNF778.bestfold.pattern_0.n_487
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF780A-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF780A-HepG2-ENCSR095JQV.bestfold.profile.pattern_0.n_984.meme ZNF780A-201.PFM-vs-ZNF780A-HepG2-ENCSR095JQV.bestfold.pattern_0.n_984
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF781-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF781-HepG2-ENCSR517HGZ.bestfold.profile.pattern_0.n_1248.meme ZNF781-201.PFM-vs-ZNF781-HepG2-ENCSR517HGZ.bestfold.pattern_0.n_1248
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF782-208/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF782-HepG2-ENCSR198RHC.bestfold.profile.pattern_0.n_2888.meme ZNF782-208.PFM-vs-ZNF782-HepG2-ENCSR198RHC.bestfold.pattern_0.n_2888
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF783-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.profile.pattern_0.n_664.meme ZNF783-202.PFM-vs-ZNF783-HEK605-ChipExo_models_ZNF783.bestfold.pattern_0.n_664
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.meme ZNF784-201.PFM-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.pattern_0.n_1802
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF784-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF784-HepG2-ENCSR082QGT.bestfold.profile.pattern_0.n_1802.meme ZNF784-202.PFM-vs-ZNF784-HepG2-ENCSR082QGT.bestfold.pattern_0.n_1802
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF790-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF790-HepG2-ENCSR117XJA.bestfold.profile.pattern_0.n_592.meme ZNF790-201.PFM-vs-ZNF790-HepG2-ENCSR117XJA.bestfold.pattern_0.n_592
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF791-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF791-HEK293-ENCSR775HFF.bestfold.profile.pattern_0.n_862.meme ZNF791-201.PFM-vs-ZNF791-HEK293-ENCSR775HFF.bestfold.pattern_0.n_862
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.profile.pattern_0.n_135.meme ZNF8-201.PFM-vs-ZNF8-HEK616-Hughes_GR_models_ZNF8.bestfold.pattern_0.n_135
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF8-MCF-7-ENCSR785UCD.bestfold.profile.pattern_0.n_285.meme ZNF8-201.PFM-vs-ZNF8-MCF-7-ENCSR785UCD.bestfold.pattern_0.n_285
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF8-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF8-SK-N-SH-ENCSR325QLX.bestfold.profile.pattern_0.n_7766.meme ZNF8-201.PFM-vs-ZNF8-SK-N-SH-ENCSR325QLX.bestfold.pattern_0.n_7766
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF800-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF800-HepG2-ENCSR701WPG.bestfold.profile.pattern_0.n_5095.meme ZNF800-201.PFM-vs-ZNF800-HepG2-ENCSR701WPG.bestfold.pattern_0.n_5095
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF808-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.profile.pattern_0.n_218.meme ZNF808-201.PFM-vs-ZNF808-HEK618-ChipExo_models_ZNF808.bestfold.pattern_0.n_218
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF81-202/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.profile.pattern_0.n_61.meme ZNF81-202.PFM-vs-ZNF816-HEK621-Hughes_GR_models_ZNF816.bestfold.pattern_0.n_61
python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF816-203/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF816-HepG2-ENCSR905BNO.bestfold.profile.pattern_0.n_2496.meme ZNF816-203.PFM-vs-ZNF816-HepG2-ENCSR905BNO.bestfold.pattern_0.n_2496
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python /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/motif-alignment.py /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/gencode.v29/ZNF83-201/results.PFM.meme /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/TFMoDiSCOtoMEME-files/ZNF83-K562-ENCSR257XVY.bestfold.profile.pattern_0.n_2422.meme ZNF83-201.PFM-vs-ZNF83-K562-ENCSR257XVY.bestfold.pattern_0.n_2422
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