## net.sf.picard.metrics.StringHeader # net.sf.picard.sam.MarkDuplicates INPUT=[KAS_tBrd1KD.2x36mers.dm6.unique.bam] OUTPUT=KAS_tBrd1KD.2x36mers.dm6.unique.dedup.bam METRICS_FILE=KAS_tBrd1KD.2x36mers.dm6.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false ## net.sf.picard.metrics.StringHeader # Started on: Wed Dec 28 01:16:32 PST 2022 ## METRICS CLASS net.sf.picard.sam.DuplicationMetrics LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATES PERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE Unknown Library 0 470211 0 0 83702 8149 0.178009 1254294 ## HISTOGRAM java.lang.Double BIN VALUE 1.0 1.014539 2.0 1.711904 3.0 2.191253 4.0 2.520743 5.0 2.747225 6.0 2.902903 7.0 3.009911 8.0 3.083465 9.0 3.134024 10.0 3.168777 11.0 3.192665 12.0 3.209085 13.0 3.220371 14.0 3.228129 15.0 3.233462 16.0 3.237128 17.0 3.239647 18.0 3.241379 19.0 3.24257 20.0 3.243388 21.0 3.24395 22.0 3.244337 23.0 3.244603 24.0 3.244785 25.0 3.244911 26.0 3.244997 27.0 3.245057 28.0 3.245097 29.0 3.245125 30.0 3.245145 31.0 3.245158 32.0 3.245167 33.0 3.245173 34.0 3.245178 35.0 3.245181 36.0 3.245183 37.0 3.245184 38.0 3.245185 39.0 3.245186 40.0 3.245186 41.0 3.245186 42.0 3.245187 43.0 3.245187 44.0 3.245187 45.0 3.245187 46.0 3.245187 47.0 3.245187 48.0 3.245187 49.0 3.245187 50.0 3.245187 51.0 3.245187 52.0 3.245187 53.0 3.245187 54.0 3.245187 55.0 3.245187 56.0 3.245187 57.0 3.245187 58.0 3.245187 59.0 3.245187 60.0 3.245187 61.0 3.245187 62.0 3.245187 63.0 3.245187 64.0 3.245187 65.0 3.245187 66.0 3.245187 67.0 3.245187 68.0 3.245187 69.0 3.245187 70.0 3.245187 71.0 3.245187 72.0 3.245187 73.0 3.245187 74.0 3.245187 75.0 3.245187 76.0 3.245187 77.0 3.245187 78.0 3.245187 79.0 3.245187 80.0 3.245187 81.0 3.245187 82.0 3.245187 83.0 3.245187 84.0 3.245187 85.0 3.245187 86.0 3.245187 87.0 3.245187 88.0 3.245187 89.0 3.245187 90.0 3.245187 91.0 3.245187 92.0 3.245187 93.0 3.245187 94.0 3.245187 95.0 3.245187 96.0 3.245187 97.0 3.245187 98.0 3.245187 99.0 3.245187 100.0 3.245187