# R script for Peak Model
#  -- generated by MACS
p <- c(0.0359248815591,0.0425956526029,0.0484325772663,0.055450784302,0.0605928369816,0.0618436065524,0.062330016941,0.0637197609084,0.0656654024629,0.0667077104385,0.0670551464304,0.0670551464304,0.0683059160011,0.0681669416043,0.0682364288027,0.0674720696206,0.0665687360418,0.0642061712971,0.0621215553459,0.0632333505198,0.0633723249166,0.0633723249166,0.0628164273296,0.062885914528,0.0660823256531,0.0666382232401,0.0666382232401,0.0699736087621,0.0714328399279,0.071085403936,0.0703210447539,0.0708074551425,0.0714328399279,0.0708074551425,0.0684448903978,0.0687228391913,0.0694871983734,0.067541556819,0.0670551464304,0.066985659232,0.0681669416043,0.067541556819,0.067541556819,0.0669161720336,0.0683754031995,0.0681669416043,0.0667077104385,0.0664992488434,0.068097454406,0.0692787367783,0.0687228391913,0.0695566855718,0.0696261727702,0.0694871983734,0.0687923263897,0.0683059160011,0.0687228391913,0.0692787367783,0.0665687360418,0.0639977097019,0.0642756584954,0.0638587353052,0.0639977097019,0.0640671969003,0.063441812115,0.0638587353052,0.0650400176775,0.0650400176775,0.0661518128515,0.0701125831588,0.0709464295393,0.070529506349,0.0694177111751,0.0718497631181,0.0726836094986,0.0715023271263,0.0718497631181,0.0719887375149,0.0737259174742,0.0703905319523,0.0705989935474,0.0717107887214,0.0728920710937,0.0715023271263,0.0718497631181,0.0726836094986,0.0719192503165,0.0715023271263,0.0698346343653,0.0698346343653,0.0709464295393,0.0713633527295,0.0713633527295,0.0701125831588,0.0689313007865,0.0688618135881,0.0685143775962,0.068653351993,0.068653351993,0.0701125831588,0.0680279672076,0.0671246336287,0.0663602744466,0.0678889928109,0.0683059160011,0.0687923263897,0.0692092495799,0.0707379679442,0.0701820703572,0.0694871983734,0.0688618135881,0.0683059160011,0.0674720696206,0.0677500184141,0.0687228391913,0.0683754031995,0.0683059160011,0.0672636080255,0.0667077104385,0.0683059160011,0.0688618135881,0.0687228391913,0.0696261727702,0.0694871983734,0.0683754031995,0.0699736087621,0.0697651471669,0.0681669416043,0.0704600191507,0.0699736087621,0.0711548911344,0.0711548911344,0.0711548911344,0.0707379679442,0.0728920710937,0.0724056607051,0.0734479686807,0.0740038662677,0.0735174558791,0.0725446351019,0.0724751479035,0.0718497631181,0.0719192503165,0.0737259174742,0.0720582247133,0.071641301523,0.0690702751832,0.0704600191507,0.0709464295393,0.0715718143246,0.070529506349,0.0717802759198,0.0726836094986,0.0709464295393,0.0701125831588,0.0696956599686,0.0707379679442,0.0708074551425,0.0693482239767,0.0678195056125,0.067541556819,0.0667077104385,0.0662907872483,0.066985659232,0.0678195056125,0.0687923263897,0.0699736087621,0.068653351993,0.0695566855718,0.0720582247133,0.0729615582921,0.0741428406645,0.0730310454905,0.072753096697,0.0731700198872,0.071641301523,0.0714328399279,0.0724751479035,0.0722666863084,0.0704600191507,0.0706684807458,0.0718497631181,0.0743513022596,0.074420789458,0.0746292510531,0.0760189950205,0.0766443798059,0.0771307901945,0.0770613029961,0.0769223285994,0.0775477133848,0.0767138670043,0.0767138670043,0.0767833542027,0.0771307901945,0.0758800206238,0.0761579694173,0.0749766870449,0.0758800206238,0.0767833542027,0.076296943814,0.076296943814,0.0736564302759,0.0734479686807,0.0736564302759,0.0739343790693,0.0734479686807,0.0740733534661,0.0729615582921,0.0736564302759,0.0737259174742,0.0751156614417,0.0759495078222,0.0764359182108,0.0760884822189,0.0759495078222,0.0764359182108,0.0764359182108,0.0769918157978,0.0748377126482,0.0736564302759,0.0719887375149,0.0728225838954,0.0728920710937,0.0741428406645,0.0752546358384,0.0756020718303,0.0749766870449,0.0737259174742,0.0740733534661,0.0758800206238,0.0762274566157,0.0758800206238,0.0755325846319,0.0731005326889,0.0720582247133,0.071641301523,0.0715718143246,0.0718497631181,0.0726836094986,0.0701820703572,0.0699041215637,0.0700430959604,0.0703210447539,0.0712938655312,0.0717107887214,0.0718497631181,0.0728225838954,0.0744902766563,0.0753936102352,0.0785900213604,0.0778256621783,0.0786595085587,0.0798407909311,0.0797018165343,0.0797713037327,0.0789374573522,0.0795628421376,0.0782425853685,0.0769918157978,0.0757410462271,0.0760189950205,0.0753241230368,0.0749766870449,0.0751156614417,0.0742123278628,0.0735174558791,0.0731700198872,0.0744902766563,0.0756020718303,0.0763664310124,0.076852841401,0.0765054054092,0.0755325846319,0.0762274566157,0.0759495078222,0.0755325846319,0.0757410462271,0.0742123278628,0.0735869430775,0.0724751479035,0.0720582247133,0.0724751479035,0.0737954046726,0.072753096697,0.0733784814824,0.0749071998466,0.0748377126482,0.0765054054092,0.0772002773929,0.0758800206238,0.0772002773929,0.0756020718303,0.0763664310124,0.0767138670043,0.0787289957571,0.0795628421376,0.0810220733034,0.0787289957571,0.0791459189474,0.0844269460237,0.0863031003798,0.0924874610351,0.0927654098285,0.0989497704838,0.102285156006,0.105273105536,0.10937285024,0.116738493267,0.121463622757,0.122644905129,0.125841316254,0.125841316254,0.128551316991,0.12834285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m <- 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ycorr <- 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altd  <- c(300)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('BW16_hg38_k562_vegfa_mre11.2x36mers.hg38-male.unique.MACS-2.1.0_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 300',bty='n')
dev.off()