# R script for Peak Model
#  -- generated by MACS
p <- c(0.0343695075814,0.0386144955167,0.0437904018589,0.048966308201,0.0544401084334,0.0548124757961,0.0551848431589,0.0549614227412,0.0543656349608,0.0541794512795,0.0544773451697,0.0561157615657,0.0568977330275,0.0571956269177,0.0576052310167,0.057642467753,0.0576797044893,0.0567860228187,0.0570839167089,0.0576797044893,0.0574190473353,0.0573818105991,0.0579031249069,0.0586106228961,0.0586106228961,0.059541541303,0.0596160147755,0.0601745658197,0.0600256188746,0.0588340433138,0.0582754922697,0.0577169412255,0.0571956269177,0.0566743126098,0.0565253656648,0.0549986594775,0.0547752390598,0.0555572105216,0.0552965533677,0.0565253656648,0.0577169412255,0.0578286514344,0.0586106228961,0.059131937204,0.0587595698412,0.0589085167863,0.0595787780393,0.0590947004677,0.0593181208853,0.0597277249844,0.0600256188746,0.0601373290834,0.0588340433138,0.0580893085883,0.0582754922697,0.0583499657422,0.0575307575442,0.0570094432363,0.0579775983795,0.0573818105991,0.0565998391373,0.0564508921922,0.0577914146981,0.05887128005,0.0594298310942,0.0597649617206,0.0609565372814,0.0619991658971,0.0618874556883,0.0619619291608,0.0616267985344,0.0628556108314,0.0626321904138,0.0623342965236,0.0620364026334,0.0621853495785,0.0613661413804,0.0608820638089,0.0592808841491,0.0600628556108,0.0609193005451,0.0606214066549,0.0599139086657,0.0600628556108,0.0601000923471,0.0604352229736,0.0613661413804,0.0612916679079,0.0630045577765,0.0631162679853,0.062259823051,0.0613289046442,0.0624460067324,0.0609193005451,0.0612171944353,0.0606214066549,0.059951145402,0.0599883821383,0.0595043045667,0.0596904882481,0.0597649617206,0.0604352229736,0.059541541303,0.0609565372814,0.0617757454795,0.0617012720069,0.0627439006226,0.062930084304,0.061850218952,0.0609937740177,0.0622225863148,0.0620364026334,0.0612171944353,0.0613289046442,0.0610682474902,0.0617385087432,0.060360749501,0.061031010754,0.0622970597873,0.0628928475677,0.0630417945128,0.0633769251393,0.0645685007001,0.0645685007001,0.0632279781942,0.0639354761834,0.0639727129197,0.063749292502,0.0642333700736,0.0631907414579,0.0623342965236,0.0625949536775,0.0622225863148,0.0621108761059,0.0631162679853,0.0624460067324,0.0634141618755,0.0624460067324,0.0625577169412,0.0636748190295,0.064158896601,0.064158896601,0.0643450802824,0.0662441538324,0.0657600762608,0.0655738925795,0.0647546843814,0.0653504721618,0.064419553755,0.0637120557657,0.0640099496559,0.0644940272275,0.0642706068099,0.0618874556883,0.0615895617981,0.0625949536775,0.064158896601,0.0649408680628,0.0650898150079,0.0665792844589,0.0654994191069,0.064829157854,0.0662813905687,0.0680315171736,0.0683666478001,0.0684411212726,0.0683294110638,0.0682549375912,0.0688507253716,0.0681432273824,0.0692603294706,0.0703774315589,0.0698933539873,0.0696326968334,0.0706008519765,0.0707497989216,0.0718296642736,0.0719413744824,0.0717924275373,0.0719786112187,0.0720903214275,0.0714200601746,0.0715690071197,0.0718296642736,0.0724999255265,0.0730212398344,0.0715690071197,0.072015847955,0.0727978194167,0.073244660252,0.0729467663618,0.0726861092079,0.0720530846912,0.0712338764932,0.0703774315589,0.0691858559981,0.067957043701,0.0671005987667,0.0666909946677,0.0668399416128,0.066728231404,0.0667654681402,0.0674357293932,0.0673612559206,0.0680687539099,0.067957043701,0.0688134886353,0.0687390151628,0.0681059906461,0.0670633620304,0.0676591498108,0.0679198069648,0.0677336232834,0.0684038845363,0.0682921743275,0.0689624355804,0.0689996723167,0.0701912478775,0.0707870356579,0.071755190801,0.071345586702,0.0719041377461,0.0716807173285,0.0716434805922,0.0713828234383,0.0709732193393,0.0700795376687,0.0693348029432,0.0694837498883,0.0689624355804,0.0692230927344,0.0700423009324,0.070116774405,0.0713083499657,0.0724626887903,0.072015847955,0.0727233459442,0.0729095296255,0.0734680806697,0.0743617623403,0.0746968929667,0.0740638684501,0.073914921505,0.0721647949001,0.071755190801,0.0725743989991,0.0745851827579,0.0746968929667,0.0742128153952,0.0733936071971,0.0733563704608,0.0735425541422,0.0746224194942,0.0751809705383,0.0749203133844,0.0753299174834,0.0746224194942,0.075553337901,0.0755161011648,0.076223599154,0.0760001787363,0.0762608358903,0.0762980726265,0.0771917542971,0.0785695135393,0.0790535911108,0.078532276803,0.078122672704,0.0786812237481,0.0789046441657,0.0794259584736,0.0799472727814,0.0803941136167,0.0805802972981,0.0799100360452,0.0799100360452,0.0802451666716,0.0801706931991,0.0803941136167,0.0808781911883,0.0814739789687,0.0802451666716,0.0806547707707,0.0792025380559,0.079351485001,0.0793887217373,0.0805430605618,0.0806175340344,0.0799845095177,0.0794631952099,0.079351485001,0.0807292442432,0.079351485001,0.0824793708481,0.0814739789687,0.0814739789687,0.082330423903,0.0824421341118,0.0838943668265,0.0844901546069,0.0870222526736,0.0879904078167,0.0909321099824,0.0922726324883,0.0961452530609,0.100092347106,0.101805236975,0.105528910602,0.106869433108,0.110295212845,0.111896392505,0.113274151747,0.115955196759,0.114093359945,0.115210462033,0.1143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m <- 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ycorr <- 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altd  <- c(269)
x <- seq.int((length(p)-1)/2*-1,(length(p)-1)/2)
pdf('BW16_hg38_k562_vegfa_fd2.2x36mers.hg38-male.unique.MACS-2.1.0_model.pdf',height=6,width=6)
plot(x,p,type='l',col=c('red'),main='Peak Model',xlab='Distance to the middle',ylab='Percentage')
lines(x,m,col=c('blue'))
legend('topleft',c('forward tags','reverse tags'),lty=c(1,1,1),col=c('red','blue'))
plot(xcorr,ycorr,type='l',col=c('black'),main='Cross-Correlation',xlab='Lag between + and - tags',ylab='Correlation')
abline(v=altd,lty=2,col=c('red'))
legend('topleft','alternative lag(s)',lty=2,col='red')
legend('right','alt lag(s) : 269',bty='n')
dev.off()