Index of /kundaje/marinovg/oak/papers/2023_CasKAS/2020-10-29-figures

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]01-dCas9-ChIP-seq-GSE54745/2025-04-21 14:06 -  
[DIR]02-GUIDE-seq-SRP050338/2025-04-21 14:06 -  
[DIR]03-CHANGE_seq-SRX8227890/2025-04-21 14:06 -  
[ ]CRISTA.EMX1_Tsai.bed2021-01-07 17:30 1.0M 
[TXT]CRISTA.EMX1_Tsai.csv2020-10-30 06:21 1.0M 
[TXT]CRISTA.EMX1_Tsai.tsv2021-01-07 17:29 1.0M 
[ ]CRISTA.Nanog-sg2.bed2021-01-07 17:30 729K 
[TXT]CRISTA.Nanog-sg2.csv2020-10-30 06:30 729K 
[TXT]CRISTA.Nanog-sg2.tsv2021-01-07 17:29 729K 
[ ]CRISTA.Nanog-sg3.bed2021-01-07 17:30 1.0M 
[TXT]CRISTA.Nanog-sg3.csv2020-10-30 06:30 1.0M 
[TXT]CRISTA.Nanog-sg3.tsv2021-01-07 17:28 1.0M 
[ ]CRISTA.Nanog.files2021-01-07 17:30 80  
[ ]CRISTA.VEGFA-site1.bed2021-01-07 17:30 548K 
[TXT]CRISTA.VEGFA-site1.csv2020-10-30 06:30 548K 
[TXT]CRISTA.VEGFA-site1.tsv2021-01-07 17:28 548K 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-intersection1-intersection12021-01-27 15:24 6.1K 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-intersection1-intersection22021-01-27 15:24 4.6K 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-intersection1-outersection12021-01-27 15:24 2.5M 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-intersection1-outersection22021-01-27 15:24 108K 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-outersection1-intersection12021-01-27 15:24 336K 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-outersection1-intersection22021-01-27 15:24 318K 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-outersection1-outersection12021-01-27 15:24 2.2M 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-outersection1-outersection22021-01-27 15:24 12M 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-outersection2-intersection12021-01-27 15:24 3.3K 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-outersection2-intersection22021-01-27 15:24 2.8K 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-outersection2-outersection12021-01-27 15:24 2.5M 
[ ]Cas-OFFinder.EMX1_Tsai-vs-L1757-dCas9_EMX1-vs-CHANGE-seq-outersection2-outersection22021-01-27 15:24 5.2M 
[ ]Cas-OFFinder.EMX1_Tsai.0bp.bed2021-01-07 16:13 2.5M 
[ ]Cas-OFFinder.EMX1_Tsai.250bp-radius.bed2021-01-07 16:15 2.5M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1655-dCas9_EMX1_Tsai-CasKAS.RPM2021-01-11 11:46 2.8M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1658-Cas9_EMX1_Tsai-CasKAS.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1757-dCas9_EMX1.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1757-dCas9_EMX1.RPM.top1002021-01-11 15:51 9.0K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1757-dCas9_EMX1.RPM.top100.clw2021-01-11 15:55 4.4K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1757-dCas9_EMX1.RPM.top100.eps2021-01-11 15:55 386K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1757-dCas9_EMX1.RPM.top100.fa2021-01-11 15:54 2.7K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1758-Cas9_EMX1.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1758-Cas9_EMX1.RPM.top1002021-01-11 15:59 9.0K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1758-Cas9_EMX1.RPM.top100.clw2021-01-11 16:02 4.4K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1758-Cas9_EMX1.RPM.top100.eps2021-01-11 16:02 396K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1758-Cas9_EMX1.RPM.top100.fa2021-01-11 16:00 2.7K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1817-HEK239-dCas9-rep1.RPM2021-01-11 11:46 3.0M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1818-HEK239-dCas9-rep2.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1819-HEK239-dCas9_EMX-rep1.RPM2021-01-11 11:46 2.7M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1820-HEK239-dCas9_EMX-rep2.RPM2021-01-11 11:46 3.0M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1843-HEK239-Cas9-rep1.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1844-HEK239-Cas9-rep2.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1847-HEK239-Cas9_EMX-rep1.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1848-HEK239-Cas9_EMX-rep2.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1849-HEK239-dCas9-rep1.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1850-HEK239-dCas9-rep2.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1853-HEK239-dCas9_EMX-rep1.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.L1854-HEK239-dCas9_EMX-rep2.RPM2021-01-11 11:46 3.0M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.RPM.files2021-01-11 11:48 1.7K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.RPM.table2021-01-11 11:49 9.1M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.RPM.table.calculations-redo.xlsx2021-01-27 14:39 11M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.bed2021-01-07 16:15 2.5M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1655-dCas9_EMX1_Tsai-CasKAS.RPM2021-01-11 14:19 415K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1658-Cas9_EMX1_Tsai-CasKAS.RPM2021-01-11 14:19 476K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1757-dCas9_EMX1.RPM2021-01-11 14:19 465K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1758-Cas9_EMX1.RPM2021-01-11 14:19 470K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1817-HEK239-dCas9-rep1.RPM2021-01-11 14:19 479K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1818-HEK239-dCas9-rep2.RPM2021-01-11 14:19 468K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1819-HEK239-dCas9_EMX-rep1.RPM2021-01-11 14:19 378K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1820-HEK239-dCas9_EMX-rep2.RPM2021-01-11 14:19 479K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1843-HEK239-Cas9-rep1.RPM2021-01-11 14:19 474K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1844-HEK239-Cas9-rep2.RPM2021-01-11 14:19 477K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1845-HEK239-Cas9_VEGF-rep1.RPM2021-01-27 23:52 478K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1846-HEK239-Cas9_VEGF-rep2.RPM2021-01-27 23:52 479K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1847-HEK239-Cas9_EMX-rep1.RPM2021-01-11 14:19 477K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1848-HEK239-Cas9_EMX-rep2.RPM2021-01-11 14:19 477K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1849-HEK239-dCas9-rep1.RPM2021-01-11 14:19 473K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1850-HEK239-dCas9-rep2.RPM2021-01-11 14:19 477K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1851-HEK239-dCas9_VEGF-rep1.RPM2021-01-27 23:52 478K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1852-HEK239-dCas9_VEGF-rep2.RPM2021-01-27 23:52 478K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1853-HEK239-dCas9_EMX-rep1.RPM2021-01-11 14:19 477K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.L1854-HEK239-dCas9_EMX-rep2.RPM2021-01-11 14:19 477K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.corrected.calculations.xlsx2021-01-28 00:58 3.6M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.corrected.files2021-01-27 23:51 1.6K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.corrected.table2021-01-27 23:53 3.1M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.files2021-01-11 14:21 1.6K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table2021-01-11 14:21 3.0M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table.calculations-vs-Hek293_18_segments2021-01-11 21:31 2.9M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table.calculations-vs-Hek293_18_segments.state-hist2021-01-11 21:31 132  
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table.calculations.-3RPM-diff-vs-Hek293_18_segments2021-01-11 21:24 80K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table.calculations.-3RPM-diff-vs-Hek293_18_segments.state-hist2021-01-11 21:24 102  
[TXT]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table.calculations.-3RPM-diff.txt2021-01-11 20:09 45K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table.calculations.-4RPM-diff-vs-Hek293_18_segments2021-01-11 21:22 35K 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table.calculations.-4RPM-diff-vs-Hek293_18_segments.state-hist2021-01-11 21:22 93  
[TXT]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table.calculations.-4RPM-diff.txt2021-01-11 20:09 15K 
[TXT]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table.calculations.txt2021-01-11 20:04 2.0M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.RPM.table.calculations.xlsx2021-01-11 17:20 4.8M 
[ ]Cas-OFFinder.EMX1_Tsai.500bp-radius.merged.bed2021-01-11 14:17 293K 
[TXT]Cas-OFFinder.EMX1_Tsai.tsv2020-10-30 06:17 2.2M 
[ ]Cas-OFFinder.Nanog-sg2.0bp.bed2021-01-07 16:13 2.5M 
[ ]Cas-OFFinder.Nanog-sg2.250bp-radius.bed2021-01-07 16:15 2.5M 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.L1722-mouse_CasKAS-Cas9_Nanog2.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.L1722-mouse_CasKAS-Cas9_Nanog2.RPM.top1002021-01-11 12:31 9.2K 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.L1722-mouse_CasKAS-Cas9_Nanog2.RPM.top100.clw2021-01-11 12:37 4.4K 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.L1722-mouse_CasKAS-Cas9_Nanog2.RPM.top100.clw.eps2021-01-11 12:37 373K 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.L1722-mouse_CasKAS-Cas9_Nanog2.RPM.top100.fa2021-01-11 12:32 2.7K 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.L1723-mouse_CasKAS-dCas9_Nanog2.RPM2021-01-11 11:46 2.9M 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.L1723-mouse_CasKAS-dCas9_Nanog2.RPM.top1002021-01-11 12:16 9.2K 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.L1723-mouse_CasKAS-dCas9_Nanog2.RPM.top100.clw2021-01-11 12:23 4.8K 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.L1723-mouse_CasKAS-dCas9_Nanog2.RPM.top100.eps2021-01-11 12:23 417K 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.RPM.files2021-01-11 11:48 246  
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.RPM.table2021-01-11 11:49 3.2M 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.bed2021-01-07 16:15 2.5M 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.merged.L1722-mouse_CasKAS-Cas9_Nanog2.RPM2021-01-11 14:19 452K 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.merged.L1723-mouse_CasKAS-dCas9_Nanog2.RPM2021-01-11 14:19 451K 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.merged.RPM.files2021-01-11 14:21 236  
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.merged.RPM.table2021-01-11 14:21 606K 
[ ]Cas-OFFinder.Nanog-sg2.500bp-radius.merged.bed2021-01-11 14:17 298K 
[TXT]Cas-OFFinder.Nanog-sg2.tsv2020-10-30 06:18 2.3M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-intersection1-intersection12021-01-27 15:24 23K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-intersection1-intersection22021-01-27 15:24 20K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-intersection1-outersection12021-01-27 15:24 2.6M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-intersection1-outersection22021-01-27 15:24 1.6M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-outersection1-intersection12021-01-27 15:24 252K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-outersection1-intersection22021-01-27 15:24 289K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-outersection1-outersection12021-01-27 15:24 2.4M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-outersection1-outersection22021-01-27 15:24 23M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-outersection2-intersection12021-01-27 15:24 2.6K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-outersection2-intersection22021-01-27 15:24 3.2K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-outersection2-outersection12021-01-27 15:24 2.6M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-outersection2-outersection22021-01-27 15:24 1.9M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-intersection1-intersection12021-01-27 15:24 28K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-intersection1-intersection22021-01-27 15:24 22K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-intersection1-outersection12021-01-27 15:24 2.6M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-intersection1-outersection22021-01-27 15:24 1.7M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-outersection1-intersection12021-01-27 15:24 248K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-outersection1-intersection22021-01-27 15:24 287K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-outersection1-outersection12021-01-27 15:24 2.4M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-outersection1-outersection22021-01-27 15:24 23M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-outersection2-intersection12021-01-27 15:24 2.1K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-outersection2-intersection22021-01-27 15:24 2.5K 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-outersection2-outersection12021-01-27 15:24 2.6M 
[ ]Cas-OFFinder.Nanog-sg3-vs-L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-outersection2-outersection22021-01-27 15:24 2.1M 
[ ]Cas-OFFinder.Nanog-sg3.0bp.bed2021-01-07 16:13 2.6M 
[ ]Cas-OFFinder.Nanog-sg3.250bp-radius.bed2021-01-07 16:15 2.6M 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.L1724-mouse_CasKAS-Cas9_Nanog3.RPM2021-01-11 11:46 3.0M 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.L1724-mouse_CasKAS-Cas9_Nanog3.RPM.top1002021-01-11 13:34 8.6K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.L1724-mouse_CasKAS-Cas9_Nanog3.RPM.top100.clw2021-01-11 13:35 5.3K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.L1724-mouse_CasKAS-Cas9_Nanog3.RPM.top100.clw.eps2021-01-11 13:36 484K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.L1724-mouse_CasKAS-Cas9_Nanog3.RPM.top100.fa2021-01-11 13:34 2.7K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.L1725-mouse_CasKAS-dCas9_Nanog3.RPM2021-01-11 11:46 3.0M 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.L1725-mouse_CasKAS-dCas9_Nanog3.RPM.top1002021-01-11 13:41 8.6K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.L1725-mouse_CasKAS-dCas9_Nanog3.RPM.top100.clw2021-01-11 13:43 4.7K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.L1725-mouse_CasKAS-dCas9_Nanog3.RPM.top100.clw.eps2021-01-11 13:43 415K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.L1725-mouse_CasKAS-dCas9_Nanog3.RPM.top100.fa2021-01-11 13:41 2.7K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.RPM.files2021-01-11 11:48 246  
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.RPM.table2021-01-11 11:49 3.3M 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.bed2021-01-07 16:15 2.6M 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.merged.L1724-mouse_CasKAS-Cas9_Nanog3.RPM2021-01-11 14:19 464K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.merged.L1725-mouse_CasKAS-dCas9_Nanog3.RPM2021-01-11 14:19 460K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.merged.RPM.files2021-01-11 14:21 236  
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.merged.RPM.table2021-01-11 14:21 625K 
[ ]Cas-OFFinder.Nanog-sg3.500bp-radius.merged.bed2021-01-11 14:17 299K 
[TXT]Cas-OFFinder.Nanog-sg3.tsv2020-10-30 06:18 2.3M 
[ ]Cas-OFFinder.Nanog.files2021-01-07 16:20 312  
[ ]Cas-OFFinder.VEGFA-site1.0bp.bed2021-01-07 16:13 2.6M 
[ ]Cas-OFFinder.VEGFA-site1.250bp-radius.bed2021-01-07 16:15 2.6M 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1654-dCas9-VEGFA_site1-CasKAS.RPM2021-01-11 11:46 3.0M 
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[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1654-dCas9-VEGFA_site1-CasKAS.RPM.top23.clw2021-01-11 16:10 1.1K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1654-dCas9-VEGFA_site1-CasKAS.RPM.top23.clw.eps2021-01-11 16:11 97K 
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[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1657-Cas9-VEGFA_site1-CasKAS.RPM2021-01-11 11:46 3.0M 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1657-Cas9-VEGFA_site1-CasKAS.RPM.top332021-01-11 16:14 3.0K 
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[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1657-Cas9-VEGFA_site1-CasKAS.RPM.top33.clw.eps2021-01-11 16:17 140K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1657-Cas9-VEGFA_site1-CasKAS.RPM.top33.fa2021-01-11 16:16 912  
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1817-HEK239-dCas9-rep1.RPM2021-01-11 11:46 3.0M 
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[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1850-HEK239-dCas9-rep2.RPM2021-01-11 11:46 3.0M 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1851-HEK239-dCas9_VEGF-rep1.RPM2021-01-11 11:46 3.0M 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.L1852-HEK239-dCas9_VEGF-rep2.RPM2021-01-11 11:46 3.0M 
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[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1817-HEK239-dCas9-rep1.RPM2021-01-11 14:19 443K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1818-HEK239-dCas9-rep2.RPM2021-01-11 14:19 433K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1821-HEK239-dCas9_VEGF-rep1.RPM2021-01-11 14:19 441K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1822-HEK239-dCas9_VEGF-rep2.RPM2021-01-11 14:19 406K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1843-HEK239-Cas9-rep1.RPM2021-01-11 14:19 438K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1844-HEK239-Cas9-rep2.RPM2021-01-11 14:19 441K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1845-HEK239-Cas9_VEGF-rep1.RPM2021-01-11 14:19 441K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1846-HEK239-Cas9_VEGF-rep2.RPM2021-01-11 14:19 443K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1849-HEK239-dCas9-rep1.RPM2021-01-11 14:19 437K 
[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1850-HEK239-dCas9-rep2.RPM2021-01-11 14:19 440K 
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[ ]Cas-OFFinder.VEGFA-site1.500bp-radius.merged.L1852-HEK239-dCas9_VEGF-rep2.RPM2021-01-11 14:19 441K 
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[TXT]Cas-OFFinder.VEGFA-site1.tsv2020-10-30 06:18 2.3M 
[TXT]Crispr-OFF.EMX1_Tsai.tsv2020-10-30 06:09 31M 
[TXT]Crispr-OFF.VEGFA-site1.tsv2020-10-30 06:14 18M 
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[TXT]Fig2-cut-sites.txt2021-01-10 19:21 19K 
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[TXT]L1238-dCas9_KAS_test1.2x36mers.a.InsLen2021-01-07 19:43 20K 
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[ ]L1238-dCas9_KAS_test1.2x36mers.mm10.unique.dedup.MACS2-PE_peaks-vs-BL-outersection1-vs-sgRNA-intersection12021-01-07 17:54 4.4K 
[ ]L1238-dCas9_KAS_test1.2x36mers.mm10.unique.dedup.MACS2-PE_peaks-vs-BL-outersection1-vs-sgRNA-intersection22021-01-07 17:34 13K 
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[ ]L1238-dCas9_KAS_test1.2x36mers.mm10.unique.dedup.MACS2-PE_peaks-vs-BL-outersection1-vs-sgRNA-outersection1.100bp.clw2021-01-07 15:06 69K 
[ ]L1238-dCas9_KAS_test1.2x36mers.mm10.unique.dedup.MACS2-PE_peaks-vs-BL-outersection1-vs-sgRNA-outersection1.100bp.fa2021-01-07 15:02 31K 
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[ ]L1238-dCas9_KAS_test1.2x36mers.mm10.unique.dedup.MACS2-PE_peaks-vs-BL-outersection1-vs-sgRNA-outersection1.manual.100bp.middle.clw2021-01-11 16:31 18K 
[ ]L1238-dCas9_KAS_test1.2x36mers.mm10.unique.dedup.MACS2-PE_peaks-vs-BL-outersection1-vs-sgRNA-outersection1.manual.100bp.middle.clw.eps2021-01-11 16:31 1.6M 
[ ]L1238-dCas9_KAS_test1.2x36mers.mm10.unique.dedup.MACS2-PE_peaks-vs-BL-outersection1-vs-sgRNA-outersection22021-01-07 17:34 697K 
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[ ]L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-intersection12021-01-07 16:09 1.6M 
[ ]L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-intersection22021-01-07 16:09 1.0M 
[ ]L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-outersection12021-01-07 16:09 23M 
[ ]L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-20ug-IP-SRR1168384-outersection22021-01-07 16:09 1.9M 
[ ]L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-intersection12021-01-07 16:09 1.7M 
[ ]L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-intersection22021-01-07 16:09 1.1M 
[ ]L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-outersection12021-01-07 16:09 23M 
[ ]L1725-mouse_CasKAS-dCas9_Nanog3-vs-Nanog-sg3-transient-IP-SRR1168382-outersection22021-01-07 16:09 2.1M 
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[ ]L1756-sheared_end-repaired_dCas9_EMX1-vs-CHANGE-seq-intersection12021-01-27 15:23 280K 
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[ ]L1757-dCas9_EMX1-vs-CHANGE-seq-intersection22021-01-27 15:09 77K 
[ ]L1757-dCas9_EMX1-vs-CHANGE-seq-outersection12021-01-27 15:09 12M 
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[ ]Off-Spotter.EMX1_Tsai.bed2020-10-30 05:30 101K 
[ ]Off-Spotter.Nanog-sg2.bed2020-10-30 05:39 31K 
[ ]Off-Spotter.Nanog-sg3.bed2020-10-30 05:41 127K 
[ ]Off-Spotter.VEGFA-site1.bed2020-10-30 05:38 76K 
[TXT]SAMstats-L1238-dCas9_KAS_test1.2x36mers.a2021-01-08 00:03 163  
[DIR]heatmaps/2021-01-27 22:52 -  
[ ]hg38-male-GuideScan.sgRNAs.set.GC.A-hist2021-01-03 13:32 1.4K 
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[ ]hg38-male-GuideScan.sgRNAs.set.GC.T-hist2021-01-03 13:32 1.4K 
[DIR]nomogram-files/2021-01-27 15:02 -  
[TXT]result.hox.inv5.sg1.500bp.L1238-dCas9_KAS_test1.clustal.txt2020-10-30 13:56 921  
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[ ]result.hox.inv5.sg1.500bp.L1427-Hox_inv_5-1uL_sgRNA-Cas9-CasKAS.clustal.eps2021-01-06 18:30 103K 
[TXT]result.hox.inv5.sg1.500bp.L1427-Hox_inv_5-1uL_sgRNA-Cas9-CasKAS.clustal.txt2021-01-06 18:30 1.3K 
[ ]result.hox.inv5.sg1.500bp.RPM.files2020-10-30 10:30 409  
[ ]result.hox.inv5.sg1.500bp.RPM.table2020-10-30 10:32 921K 
[ ]result.hox.inv5.sg1.RPM-files-2.tar.gz2021-01-22 19:14 3.6M 
[ ]result.hox.inv5.sg1.RPM-files.tar.gz2021-01-22 17:51 8.4M 
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[ ]signal-around-outsersect-manual.L1427.minus.5p.50bp_radius2021-01-10 18:35 137K 
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[ ]signal-around-outsersect-manual.top30_in_L1238.minus.5p.50bp_radius2021-01-10 18:36 20K 
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[ ]signal-around-top33.L1657-Cas9-VEGFA_site1-CasKAS.5p.plus.50bp_radius2021-01-27 23:13 18K 
[ ]signal-around-top33.L1657-Cas9-VEGFA_site1-CasKAS.cut_sites.C-score2021-01-27 23:24 7.6K 
[ ]signal-around-top33.L1657-Cas9-VEGFA_site1-CasKAS.cut_sites.C-score.Blues-0.1.eps2021-01-27 23:53 650K 
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[ ]signal-around-top33.L1657-Cas9-VEGFA_site1-CasKAS.cut_sites.C-score.curated2021-01-28 03:53 6.0K 
[ ]signal-around-top33.L1657-Cas9-VEGFA_site1-CasKAS.cut_sites.C-score.curated.Blues-0.1.eps2021-01-28 03:53 514K 
[IMG]signal-around-top33.L1657-Cas9-VEGFA_site1-CasKAS.cut_sites.C-score.curated.Blues-0.1.png2021-01-28 03:53 1.9K 
[ ]signal-around-top33.L1817-HEK239-dCas9-rep1.5p.minus.50bp_radius2021-01-27 23:13 18K 
[ ]signal-around-top33.L1817-HEK239-dCas9-rep1.5p.plus.50bp_radius2021-01-27 23:13 17K 
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[ ]signal-around-top33.L1819-HEK239-dCas9_EMX-rep1.5p.plus.50bp_radius2021-01-27 23:13 17K 
[ ]signal-around-top33.L1821-HEK239-dCas9_VEGF-rep1.5p.minus.50bp_radius2021-01-27 23:13 18K 
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[ ]signal-around-top33.L1843-HEK239-Cas9-rep1.5p.minus.50bp_radius2021-01-27 23:13 17K 
[ ]signal-around-top33.L1843-HEK239-Cas9-rep1.5p.plus.50bp_radius2021-01-27 23:13 17K 
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[ ]signal-around-top33.L1847-HEK239-Cas9_EMX-rep1.5p.minus.50bp_radius2021-01-27 23:13 17K 
[ ]signal-around-top33.L1847-HEK239-Cas9_EMX-rep1.5p.plus.50bp_radius2021-01-27 23:13 17K 
[ ]signal-around-top33.L1848-HEK239-Cas9_EMX-rep2.5p.minus.50bp_radius2021-01-27 23:13 17K 
[ ]signal-around-top33.L1848-HEK239-Cas9_EMX-rep2.5p.plus.50bp_radius2021-01-27 23:13 17K 
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