is.broadpeak FALSE 
read /broad/hptmp/anshul/idr_1772913906/MOSAiCS3-ZNF274-K562-Rep1.relaxed.narrowPeak_1772913906 :  103963 peaks
 103963 peaks are left after cleaning
 /broad/hptmp/anshul/idr_1772913906/MOSAiCS3-ZNF274-K562-Rep2.relaxed.narrowPeak_1772913906 :  112331 peaks
 112331  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: /broad/compbio/anshul/projects/encode3/evaluation/tfs/phase1/idrResults/origWidth/MOSAICS3/idr/MOSAiCS3-ZNF274-K562-Rep1_VS_MOSAiCS3-ZNF274-K562-Rep2-uri.sav 
EM is done

EM is saved at: /broad/compbio/anshul/projects/encode3/evaluation/tfs/phase1/idrResults/origWidth/MOSAICS3/idr/MOSAiCS3-ZNF274-K562-Rep1_VS_MOSAiCS3-ZNF274-K562-Rep2-em.sav 
EM estimation for the following files
/broad/hptmp/anshul/idr_1772913906/MOSAiCS3-ZNF274-K562-Rep1.relaxed.narrowPeak_1772913906
/broad/hptmp/anshul/idr_1772913906/MOSAiCS3-ZNF274-K562-Rep2.relaxed.narrowPeak_1772913906
$p
[1] 0.3969173

$rho1
[1] 0.8355644

$rho2
[1] 0

Write overlapped peaks and local idr to: /broad/compbio/anshul/projects/encode3/evaluation/tfs/phase1/idrResults/origWidth/MOSAICS3/idr/MOSAiCS3-ZNF274-K562-Rep1_VS_MOSAiCS3-ZNF274-K562-Rep2-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 4469.174

$x.mean2
[1] 7617.776

$y.mean1
[1] 4979.662

$y.mean2
[1] 7280.671

$x.sd1
[1] 3546.247

$x.sd2
[1] 3189.593

$y.sd1
[1] 3538.546

$y.sd2
[1] 3470.825